Citrus Sinensis ID: 033419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccccccccccEEEEccccHHHHHHHHHHHccccEEEEccccccccccccHHHHcccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccEEcccccccEEEEEEcEEEEcccHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MYETDSTIVQSLTqkglqvtkdskqnvykiKCDVVIVGSGCGGGVAAAVLASAGQKVVViekgnyftpkdyslleaeglyvcdasvfpsavgvnpmitIQSTAYCLSKRIAESLREQSS
Flexible Loop (DISEMBL)
myetdstivqsltqkglqvtkdskqnvyKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS
Low Complexity Region (SEG)
MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDvvivgsgcgggvaaavlasagQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS
Disordered region (IsUnstruct)
***********************KQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRI*********
Disordered Region (DISOPRED)
******T*********************KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIA*SLR****
Disordered Region (DISEMBL)
**********SLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIA********
Disordered Region (DISPRO)
****DSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLRE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
B5WWZ9	750	Long-chain-alcohol oxidas	N/A	no	0.663	0.105	0.696	6e-28
B5WWZ8	749	Long-chain-alcohol oxidas	N/A	no	0.663	0.105	0.658	1e-18
Q94BP3	748	Long-chain-alcohol oxidas	yes	no	0.630	0.100	0.666	1e-14
Q9ZWB9	758	Long-chain-alcohol oxidas	no	no	0.361	0.056	0.720	5e-13
Q9LW56	746	Long-chain-alcohol oxidas	no	no	0.336	0.053	0.75	2e-11
O65709	726	Long-chain-alcohol oxidas	no	no	0.361	0.059	0.511	8e-08
Q11157	629	Uncharacterized GMC-type	yes	no	0.344	0.065	0.463	0.0008

>sp|B5WWZ9|FAO2_LOTJA Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 68/79 (86%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           MYETDST++QSLT+KGL+VT+D +QN+YKIKCD VIVGSGCGGGVAAAVLA++G KV+++
Sbjct: 208 MYETDSTLIQSLTEKGLEVTEDLEQNMYKIKCDAVIVGSGCGGGVAAAVLANSGHKVIIL 267

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKG YF   DYS LE   +
Sbjct: 268 EKGEYFVSHDYSSLEGPSM 286

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.
Lotus japonicus (taxid: 34305)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 2EC: 0

>sp|B5WWZ8|FAO1_LOTJA Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/79 (65%), Positives = 66/79 (83%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           M+ET+ST+ QSLT+KGL VT DS+ N+ K+KCD ++VGSGCGGGVAA+VL+ AG KVVV+
Sbjct: 206 MHETNSTLQQSLTEKGLNVTLDSRNNILKVKCDAIVVGSGCGGGVAASVLSGAGHKVVVL 265

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKGNYF P+DYS LE   +
Sbjct: 266 EKGNYFAPRDYSSLEGPSM 284

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.

Lotus japonicus (taxid: 34305)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q94BP3|FAO4B_ARATH Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana GN=FAO4B PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 60/75 (80%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           M+E+D TI QSLT+KG+ V +D   NVY+I+CD V+VGSG GGGVAAA LA AG KV+V+
Sbjct: 207 MHESDVTITQSLTEKGVHVARDDGDNVYRIRCDAVVVGSGSGGGVAAANLAKAGLKVLVL 266

Query: 61  EKGNYFTPKDYSLLE 75
           EKGNYFT  DYS LE
Sbjct: 267 EKGNYFTAHDYSGLE 281

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q9ZWB9|FAO1_ARATH Long-chain-alcohol oxidase FAO1 OS=Arabidopsis thaliana GN=FAO1 PE=3 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 75  EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
           EAE LYVCDASV P+A+GVNPMIT+QSTAYC+S RIAE ++++
Sbjct: 713 EAEDLYVCDASVLPTALGVNPMITVQSTAYCISNRIAELMKKR 755

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q9LW56|FAO3_ARATH Long-chain-alcohol oxidase FAO3 OS=Arabidopsis thaliana GN=FAO3 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/40 (75%), Positives = 35/40 (87%)

Query: 75  EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESL 114
           EAE L+VCDAS  PSAVGVNPMIT+ STAYC+S RIA+S+
Sbjct: 701 EAEKLFVCDASALPSAVGVNPMITVMSTAYCISTRIAKSM 740

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|O65709|FAO4A_ARATH Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=3 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 75  EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
           E E L+V D SVFP+A+GVNPM+T+QS AYC+   + + L+++
Sbjct: 683 EVERLFVADTSVFPTALGVNPMVTVQSIAYCIGLNVVDVLKKK 725

Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q11157|Y492_MYCTU Uncharacterized GMC-type oxidoreductase Rv0492c/MT0511/MT0512 OS=Mycobacterium tuberculosis GN=Rv0492c PE=3 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 31  KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71
           + D V+VGSG GG + A  LA AG  VVV+E+G  +T +++
Sbjct: 146 RADAVVVGSGAGGAMVARTLARAGLDVVVLEEGRRWTVEEF 186

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
193850549	723	alcohol oxidase [Glycine max]	0.663	0.109	0.721	3e-27
356572276	744	PREDICTED: long-chain-alcohol oxidase FA	0.663	0.106	0.721	3e-27
300680945	750	RecName: Full=Long-chain-alcohol oxidase	0.663	0.105	0.696	3e-26
255577920	745	electron carrier, putative [Ricinus comm	0.647	0.103	0.701	8e-25
359480305	749	PREDICTED: long-chain-alcohol oxidase FA	0.655	0.104	0.670	1e-23
449468696	738	PREDICTED: long-chain-alcohol oxidase FA	0.647	0.104	0.692	2e-22
356533767	782	PREDICTED: long-chain-alcohol oxidase FA	0.663	0.101	0.645	7e-22
357150219	766	PREDICTED: long-chain-alcohol oxidase FA	0.663	0.103	0.569	1e-19
218184733	710	hypothetical protein OsI_34014 [Oryza sa	0.638	0.107	0.592	3e-18
326507824	752	predicted protein [Hordeum vulgare subsp	0.630	0.099	0.586	6e-18

>gi|193850549|gb|ACF22878.1| alcohol oxidase [Glycine max]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           MYETDST++QSLT+KGL+VT+D +QN+YK+KCDVVIVGSGCGGGVAAAVLA++G KVVV+
Sbjct: 181 MYETDSTLIQSLTEKGLEVTEDKRQNLYKVKCDVVIVGSGCGGGVAAAVLANSGHKVVVL 240

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKG YF   DYS LE   +
Sbjct: 241 EKGEYFVSHDYSSLEGPSM 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572276|ref|XP_003554295.1| PREDICTED: long-chain-alcohol oxidase FAO2-like [Glycine max]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           MYETDST++QSLT+KGL+VT+D +QN+YK+KCDVVIVGSGCGGGVAAAVLA++G KVVV+
Sbjct: 202 MYETDSTLIQSLTEKGLEVTEDKRQNLYKVKCDVVIVGSGCGGGVAAAVLANSGHKVVVL 261

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKG YF   DYS LE   +
Sbjct: 262 EKGEYFVSHDYSSLEGPSM 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300680945|sp|B5WWZ9.1|FAO2_LOTJA RecName: Full=Long-chain-alcohol oxidase FAO2; AltName: Full=Long-chain fatty alcohol oxidase 2 gi|209570222|emb|CAP15763.1| long chain fatty alcohol oxidase FAO2 [Lotus japonicus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 68/79 (86%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           MYETDST++QSLT+KGL+VT+D +QN+YKIKCD VIVGSGCGGGVAAAVLA++G KV+++
Sbjct: 208 MYETDSTLIQSLTEKGLEVTEDLEQNMYKIKCDAVIVGSGCGGGVAAAVLANSGHKVIIL 267

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKG YF   DYS LE   +
Sbjct: 268 EKGEYFVSHDYSSLEGPSM 286

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577920|ref|XP_002529832.1| electron carrier, putative [Ricinus communis] gi|223530660|gb|EEF32533.1| electron carrier, putative [Ricinus communis]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 65/77 (84%)

Query: 3   ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           E D T+V+SL QKG+QVT+D   N YKIKCDVVI+GSGCGGGVAAAVLAS+GQKV+V+EK
Sbjct: 210 EDDLTLVKSLMQKGIQVTEDPDHNTYKIKCDVVIIGSGCGGGVAAAVLASSGQKVLVLEK 269

Query: 63  GNYFTPKDYSLLEAEGL 79
           GNYF P+DYS +E   +
Sbjct: 270 GNYFVPEDYSSVEGPSM 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480305|ref|XP_002272123.2| PREDICTED: long-chain-alcohol oxidase FAO2-like [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 67/79 (84%), Gaps = 1/79 (1%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           MYE DST+VQSL+Q+G++V +D K N+ KIKCDVVI+GSGCGGGV AAVLAS+G KV+++
Sbjct: 209 MYENDSTLVQSLSQRGIKVIEDQK-NICKIKCDVVIIGSGCGGGVTAAVLASSGYKVLIL 267

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKGNYF P+DYS LE   +
Sbjct: 268 EKGNYFEPEDYSSLEGPSM 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468696|ref|XP_004152057.1| PREDICTED: long-chain-alcohol oxidase FAO2-like [Cucumis sativus] gi|449531315|ref|XP_004172632.1| PREDICTED: long-chain-alcohol oxidase FAO2-like [Cucumis sativus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 64/78 (82%), Gaps = 1/78 (1%)

Query: 3   ETDSTIVQSLTQKGLQVTKDSKQ-NVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
           E DST+++SL+QKGL+V +D K  N YKIKCDVVIVGSGCGGGVAAAVLA +G KVVV+E
Sbjct: 205 EDDSTLLRSLSQKGLEVIEDKKHGNAYKIKCDVVIVGSGCGGGVAAAVLAKSGLKVVVLE 264

Query: 62  KGNYFTPKDYSLLEAEGL 79
           KGNYF  +DYS LE   +
Sbjct: 265 KGNYFVAEDYSSLEGPSM 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533767|ref|XP_003535431.1| PREDICTED: long-chain-alcohol oxidase FAO1-like [Glycine max]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 63/79 (79%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           M E++ ++ +SL +KGL+V  DSK N   IKCDVVIVGSGCGGGVAA++LAS+G KV+V+
Sbjct: 243 MKESNLSLPKSLIEKGLEVAIDSKNNTLNIKCDVVIVGSGCGGGVAASILASSGLKVLVL 302

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKGNYFTP DYS LE   L
Sbjct: 303 EKGNYFTPNDYSSLEGPSL 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357150219|ref|XP_003575383.1| PREDICTED: long-chain-alcohol oxidase FAO2-like [Brachypodium distachyon]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 63/79 (79%)

Query: 1   MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           ++ TD+++   L  KGL VT+D+ +N+++++CDV IVGSGCGGGV AAVLA+AG KVVVI
Sbjct: 214 IHHTDASLPACLADKGLTVTEDAARNLFRVECDVAIVGSGCGGGVTAAVLAAAGHKVVVI 273

Query: 61  EKGNYFTPKDYSLLEAEGL 79
           EKG+YFT KDY+ +E   +
Sbjct: 274 EKGSYFTSKDYTSIEGPSM 292

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184733|gb|EEC67160.1| hypothetical protein OsI_34014 [Oryza sativa Indica Group]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 58/76 (76%)

Query: 4   TDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
           TD+T+++SL  KGL V   +    + ++CD VIVGSGCGGGVAAAVLASAG KVVV+EKG
Sbjct: 224 TDTTLLRSLAAKGLSVRPGASDEHHTVRCDAVIVGSGCGGGVAAAVLASAGYKVVVVEKG 283

Query: 64  NYFTPKDYSLLEAEGL 79
           +YFT +DYS +E   +
Sbjct: 284 DYFTKEDYSSIEGPSM 299

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507824|dbj|BAJ86655.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 57/75 (76%)

Query: 5   DSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           D+T+++SL  KGL V   +    + ++CDVVIVGSGCGGGVAAAVLAS G KV+V+EKG+
Sbjct: 222 DATLLRSLADKGLAVKPATSGYYHAVECDVVIVGSGCGGGVAAAVLASVGHKVLVVEKGD 281

Query: 65  YFTPKDYSLLEAEGL 79
           YFTP DYS +E   +
Sbjct: 282 YFTPDDYSSVEGPSM 296

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
UNIPROTKB|B5WWZ8	749	FAO1 "Long-chain-alcohol oxida	0.663	0.105	0.468	2e-28
TAIR|locus:2139895	748	AT4G28570 [Arabidopsis thalian	0.369	0.058	0.704	4e-27
TAIR|locus:2024157	758	AT1G03990 "AT1G03990" [Arabido	0.361	0.056	0.720	1.5e-25
UNIPROTKB|Q6K9N5	770	OJ1234_B11.20 "Os02g0621800 pr	0.378	0.058	0.688	4.3e-23
TAIR|locus:2140401	726	AT4G19380 "AT4G19380" [Arabido	0.361	0.059	0.511	8.5e-13
UNIPROTKB|Q7XDG3	784	LOC_Os10g33460 "GMC oxidoreduc	0.378	0.057	0.688	3.2e-11
TAIR|locus:2090900	746	FAO3 "AT3G23410" [Arabidopsis	0.336	0.053	0.75	1.7e-10
ASPGD|ASPL0000057677	745	AN0623 [Emericella nidulans (t	0.361	0.057	0.604	6.3e-09
DICTYBASE|DDB_G0292042	781	DDB_G0292042 "glucose-methanol	0.428	0.065	0.352	0.00013

UNIPROTKB|B5WWZ8 FAO1 "Long-chain-alcohol oxidase FAO1" [Lotus japonicus (taxid:34305)]

 Score = 190 (71.9 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 37/79 (46%), Positives = 47/79 (59%)

Query:     1 MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDXXXXXXXXXXXXXXXXXXXXXQKVVVI 60
             M+ET+ST+ QSLT+KGL VT DS+ N+ K+KCD                      KVVV+
Sbjct:   206 MHETNSTLQQSLTEKGLNVTLDSRNNILKVKCDAIVVGSGCGGGVAASVLSGAGHKVVVL 265

Query:    61 EKGNYFTPKDYSLLEAEGL 79
             EKGNYF P+DYS LE   +
Sbjct:   266 EKGNYFAPRDYSSLEGPSM 284

GO:0006066 "alcohol metabolic process" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2139895 AT4G28570 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 31/44 (70%), Positives = 39/44 (88%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQS 118
             EAEGL+VCD S+ PSAVGVNPMITIQSTAYC+S +I +SL+ ++
Sbjct:   703 EAEGLFVCDGSILPSAVGVNPMITIQSTAYCISSKIVDSLQNKT 746

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IEA;IBA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IBA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

TAIR|locus:2024157 AT1G03990 "AT1G03990" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
             EAE LYVCDASV P+A+GVNPMIT+QSTAYC+S RIAE ++++
Sbjct:   713 EAEDLYVCDASVLPTALGVNPMITVQSTAYCISNRIAELMKKR 755

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IEA;IBA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IBA

UNIPROTKB|Q6K9N5 OJ1234_B11.20 "Os02g0621800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 158 (60.7 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 31/45 (68%), Positives = 37/45 (82%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS 119
             EAE LYVCD SV P+AVGVNPMITIQS AYCL+  IA+SL  +++
Sbjct:   726 EAERLYVCDGSVLPTAVGVNPMITIQSVAYCLANGIADSLSAKTT 770

GO:0046577 "long-chain-alcohol oxidase activity" evidence=ISS

TAIR|locus:2140401 AT4G19380 "AT4G19380" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
             E E L+V D SVFP+A+GVNPM+T+QS AYC+   + + L+++
Sbjct:   683 EVERLFVADTSVFPTALGVNPMVTVQSIAYCIGLNVVDVLKKK 725

GO:0005575 "cellular_component" evidence=ND

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IEA;IBA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IBA

UNIPROTKB|Q7XDG3 LOC_Os10g33460 "GMC oxidoreductase family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 166 (63.5 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 31/45 (68%), Positives = 39/45 (86%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS 119
             EAEGLYVCD S+ P+AVGVNPMITI+S AYC++K IAESL  +++
Sbjct:   722 EAEGLYVCDGSLLPTAVGVNPMITIESVAYCVAKGIAESLASRAA 766

GO:0046577 "long-chain-alcohol oxidase activity" evidence=ISS

TAIR|locus:2090900 FAO3 "AT3G23410" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 30/40 (75%), Positives = 35/40 (87%)

Query:    75 EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESL 114
             EAE L+VCDAS  PSAVGVNPMIT+ STAYC+S RIA+S+
Sbjct:   701 EAEKLFVCDASALPSAVGVNPMITVMSTAYCISTRIAKSM 740

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IEA;IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0006066 "alcohol metabolic process" evidence=IDA

ASPGD|ASPL0000057677 AN0623 [Emericella nidulans (taxid:162425)]

 Score = 123 (48.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query:    77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQSS 119
             +GLYV DAS+FPSA GVNPMIT  + A  LS++IA+S+  QS+
Sbjct:   701 KGLYVIDASIFPSASGVNPMITNMAIADHLSRKIAKSMEFQSA 743

GO:0005575 "cellular_component" evidence=ND

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

DICTYBASE|DDB_G0292042 DDB_G0292042 "glucose-methanol-choline oxidoreductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 93 (37.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query:    62 KGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAE 112
             K N    ++    + + L++ D SV PS+VGVNPMITI + ++ ++ +I +
Sbjct:   685 KSNSVVNENGESWDVKRLFIADGSVLPSSVGVNPMITIYAISHIIANQIIQ 735

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046577 "long-chain-alcohol oxidase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.3.20	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-08
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	1e-08
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	3e-08
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	9e-08
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	1e-07
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	2e-07
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-07
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	2e-07
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	8e-07
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	9e-07
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	3e-06
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	3e-06
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	3e-06
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	5e-06
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	5e-06
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	6e-06
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	6e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	7e-06
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	8e-06
PRK07843	557	PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrog	1e-05
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	1e-05
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	2e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-05
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	2e-05
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-05
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	2e-05
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	3e-05
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	4e-05
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	4e-05
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	4e-05
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	4e-05
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	4e-05
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	5e-05
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	7e-05
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	8e-05
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	9e-05
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-04
PRK06263	543	PRK06263, sdhA, succinate dehydrogenase flavoprote	1e-04
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	1e-04
PRK12835	584	PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrog	1e-04
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	2e-04
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-04
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-04
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	4e-04
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	4e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	7e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	7e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	8e-04
PRK06452	566	PRK06452, sdhA, succinate dehydrogenase flavoprote	8e-04
PLN02985	514	PLN02985, PLN02985, squalene monooxygenase	0.001
PRK11259	376	PRK11259, solA, N-methyltryptophan oxidase; Provis	0.001
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	0.001
PRK07057	591	PRK07057, sdhA, succinate dehydrogenase flavoprote	0.001
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	0.001
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	0.002
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.002
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.002
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.002
TIGR00551	488	TIGR00551, nadB, L-aspartate oxidase	0.002
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.002
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	0.002
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	0.003
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	0.003
PRK08275	554	PRK08275, PRK08275, putative oxidoreductase; Provi	0.004
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	0.004
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.004
PRK07573	640	PRK07573, sdhA, succinate dehydrogenase flavoprote	0.004
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	0.004

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          + D VIVGSG  G V AA L+ AG  V+V+E G
Sbjct: 7  EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39

Length = 542

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
           ++ DVVIVG+G  G  AA  LA AG  V+V+EKG+  
Sbjct: 1  MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38

Length = 396

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTAYCL 106
           + L V DASVFPS+   NP +TI + A   
Sbjct: 110 DNLRVVDASVFPSSPSGNPTLTIYALAERA 139

This domain found associated with pfam00732. Length = 139

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVV++G+G  G  AAA+LA AG KV V+EK
Sbjct: 5  DVVVIGAGLNGLAAAALLARAGLKVTVLEK 34

Length = 487

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DVV++GSG  G  AA   A AG KV V+EKG  F
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPF 34

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
            + DVV++G G  G  AA   A AG KV ++ K  
Sbjct: 4  IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAP 39

Length = 562

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 70  DYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLRE 116
              +   E L V DASV P++ GVNP +TI      L++R A+ +  
Sbjct: 493 YLRVHGLENLRVVDASVMPTSTGVNPNLTI----IALAERAADHILG 535

Length = 542

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 44.4 bits (106), Expect = 2e-07
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 36 IVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          IVG+G  G VAA +LA  G+ V+V+EK +  
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          CDV+++GSG  G  AA   A  G KV+V+EK
Sbjct: 13 CDVLVIGSGAAGLSAAVTAAWHGLKVIVVEK 43

Length = 581

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          DV+++G+G  G VAA   A  G+KV +IEKG  
Sbjct: 5  DVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37

Length = 460

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
           + DVV++G+G  G VAA   A  G KV ++EKG   
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39

Length = 454

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70
          D +IVG+G  G VAA VLA  G +V+VIE+GN    K+
Sbjct: 7  DAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN 44

Length = 428

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DV IVG+G  G  AA  LA AG KV V E+   F
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60

Length = 257

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          ++ CDV+++GSG GG  AA      G  VVV+EK   F
Sbjct: 7  ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44

Length = 574

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D +++G+G  G   AA  A  G KV +IE+G
Sbjct: 7  DAIVIGAGQAGPPLAARAAGLGMKVALIERG 37

Length = 463

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 21/65 (32%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG---------------------NYFTPKDY 71
           + IVG+G  G  AA  L  AG++V V EKG                      YF P+D 
Sbjct: 3  SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDE 62

Query: 72 SLLEA 76
            L A
Sbjct: 63 LFLRA 67

Length = 331

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DV+IVG+G  G  AA  LA AG KV + E+   F
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65

Length = 262

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 33 DVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY 65
          DVV+VG G   GVAAA+ A+  G KV+++E+  +
Sbjct: 1  DVVVVGGGP-AGVAAAIAAARLGAKVLLVERRGW 33

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 6/38 (15%)

Query: 29 KIKCDVVIVGSGCGG--GVAAAV-LASAGQKVVVIEKG 63
           +K DVVI+G   GG  G++AA  LA  G  V V+E G
Sbjct: 2  SMKMDVVIIG---GGIVGLSAAYYLAERGADVTVLEAG 36

Length = 387

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           DV++VG+G  G VAAA LA AG++V+++++ N
Sbjct: 5  ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37

Length = 549

>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DVV+VGSG  G VAA   A  G   VV+EK  ++
Sbjct: 9  DVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42

Length = 557

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69
          DVV+VG+G  G  AA  LA  G +V+++EK ++   K
Sbjct: 2  DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK 38

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          +K DV+++G G  G  AA   A AG++V ++ KG
Sbjct: 1  MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34

Length = 422

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV IVG+G  G   A  LA AG  V ++E+
Sbjct: 4  DVAIVGAGPAGLALALALARAGLDVTLLER 33

Length = 387

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          DV+++G+G GG VAA   A  G KV ++EK  
Sbjct: 6  DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37

Length = 462

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV+++G G GG VAA   A  G KV ++EK
Sbjct: 3  DVIVIGGGPGGYVAAIRAAQLGLKVALVEK 32

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
              DVV+VGSG GG  AA   A  G KV+V+EK
Sbjct: 6  THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK 39

Length = 572

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          K D ++VG+G  G VAA V+A AG  V+VIE+G+
Sbjct: 5  KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38

Length = 429

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 18/65 (27%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSA 90
          + DV+IVG G  G + A +LA AG +VV++E+                      SV P A
Sbjct: 1  ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHA------------------TTSVLPRA 42

Query: 91 VGVNP 95
           G+N 
Sbjct: 43 GGLNQ 47

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           DV+++G G  G +AA   A  G++V++I+KG 
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGK 33

Length = 405

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68
          D +++GSG GG V A  LA  G KV+V+E+  Y  P
Sbjct: 2  DAIVIGSGIGGLVTATQLAVKGAKVLVLER--YLIP 35

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
             D  IVG G  G +   +LA AG  V V+EK
Sbjct: 5  ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEK 37

Length = 407

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          D+V++GSG  G  AA   A  G++V VIE+  
Sbjct: 7  DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38

Length = 461

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVV+VGSG GG  AA   A +G + +++EK
Sbjct: 8  DVVVVGSGGGGMCAALAAADSGLEPLIVEK 37

Length = 557

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK-----GNYFTPKDYSLL 74
          D +IVG+G  G V A +LA   ++V+V+EK     GN +   D ++L
Sbjct: 3  DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETIL 49

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          + DV+I+G G  G +AA   A AG++V++I+KG
Sbjct: 3  RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKG 35

Length = 408

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK-----GNYFTPKD 70
          D +IVG+G  G V A V A  G++V+++EK     GN +   D
Sbjct: 3  DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEAD 45

Length = 374

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
           + D+VI+G G GG VAA      G K  ++EKG
Sbjct: 3  KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36

Length = 472

>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          +  DV+I+GSG G G  AA+ A  G+ VV++ KG
Sbjct: 6  MITDVLIIGSG-GAGARAAIEAERGKNVVIVSKG 38

Length = 543

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           +  DV++VG+G  G VAAA LA AG++V+++++  
Sbjct: 3  GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38

Length = 552

>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DV++VGSG GG  AA   A+ G   +V+EK  +F
Sbjct: 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46

Length = 584

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           DVV+VG G  G  AA   A+AG +V+V+E+  
Sbjct: 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53

Length = 492

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           DVVIVG+G  G   A +L   G +V+V+E+
Sbjct: 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLER 41

Length = 500

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEK 62
            DV I+G+G  G  AA  L  AG    V+ EK
Sbjct: 8  HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEK 40

Length = 443

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          DVV++G G  G   A  LA  G  V ++E+G
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERG 31

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV ++G G  G  AA  LA AG + +++E+
Sbjct: 2  DVAVIGGGPSGATAAETLARAGIETILLER 31

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV+IVG    G V A  L+  G+KV+++E+
Sbjct: 35 DVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVVI+G G  G  AA  LA  G KV +IE+
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIER 30

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVVIVG+G  G  AA  LA  G KV +IE+
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIER 48

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 31  KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68
             DVV+VG+G  G  AA   A  G+KV +IE  +    
Sbjct: 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173

Length = 415

>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          KI+ D V++G G  G ++A  +ASAG KV VI K
Sbjct: 3  KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK 36

Length = 566

>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 12 LTQKGLQVTKDSKQNVYKIK---CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          +T +  + T+ +     + K    DV+IVG+G GG   A  LA  G++V VIE+
Sbjct: 21 VTNRKKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74

Length = 514

>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68
          + DV+++G G  G  A   LA  G +V+ +++   F P
Sbjct: 3  RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDR---FMP 37

Length = 376

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 35 VIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          +I+G G  G +AA   A  G  V+++EK  
Sbjct: 1  IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 24 KQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          K ++ + K DVVIVG+G  G  A+  LA AG  V V+ K
Sbjct: 5  KTSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43

Length = 591

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          DV+++G+G  G  AA   A AG KV+++E+  Y
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50

Length = 578

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          DVV+VGSG  G  AA     AG++V+V+ K 
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKA 48

Length = 541

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
           DV+IVG+G  G  AA  L  AG +V ++E  +  
Sbjct: 8  ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42

Length = 450

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           V++G+G GG   A  LA+AG  V V+E+
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQ 29

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV+IVG+G  G  AA  LA  G KV V+E+
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
           CDVV++GSG  G  AA  LA  G+ V+V+ K 
Sbjct: 2  SCDVVVIGSGAAGLSAALALADQGR-VIVLSKA 33

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 488

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            D+V+VG+G  G   A  LA +G KV +IE+
Sbjct: 3  HSDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34

Length = 392

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          +IK  VV++G+G  G  AA   A  G + V +E+
Sbjct: 2  EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVER 35

Length = 471

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVV++G+G GG VAA   A  G K  V+EK
Sbjct: 6  DVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35

Length = 466

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 34  VVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           V +VGSG  G  AA  LA AG KV V E+
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFER 174

Length = 471

>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 26 NVYKIKCDVVIVGSGCGGGVAA--AVLASAGQKVVVIEKGN 64
          N  +++ D++++G G  G +AA  A   +   +V+++EK N
Sbjct: 4  NTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKAN 44

Length = 554

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
           D+ ++G G  G  AA  LA AG  V ++
Sbjct: 8  TDIAVIGGGPAGLAAAIALARAGASVALV 36

Length = 388

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
          +  VV++G+G  G  AAA+LA  G +V ++E
Sbjct: 1  ETSVVVIGAGIAGLTAAALLAKRGYRVTLLE 31

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
          K K DV++VG+G  G  AAA L   G  V V 
Sbjct: 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVF 64

Length = 640

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          D+ IVG G  G   A  LA  G  V V+E 
Sbjct: 7  DIAIVGGGMVGAALALGLAQHGFSVAVLEH 36

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.08
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.0
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.95
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.92
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.92
COG2081	408	Predicted flavoproteins [General function predicti	98.88
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.83
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.83
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.82
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.81
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.75
PLN02268	435	probable polyamine oxidase	98.74
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.74
PRK07208	479	hypothetical protein; Provisional	98.74
PRK10157	428	putative oxidoreductase FixC; Provisional	98.73
PRK10015	429	oxidoreductase; Provisional	98.73
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.72
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.69
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.68
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.68
PLN02576	496	protoporphyrinogen oxidase	98.67
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.65
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.65
PLN02463	447	lycopene beta cyclase	98.64
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.64
PRK07233	434	hypothetical protein; Provisional	98.64
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.63
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.62
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.61
PRK06370	463	mercuric reductase; Validated	98.6
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.59
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.59
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.59
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.59
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.59
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.59
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.58
PLN02568	539	polyamine oxidase	98.58
PRK06116	450	glutathione reductase; Validated	98.58
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.58
PLN02661	357	Putative thiazole synthesis	98.58
PRK07045	388	putative monooxygenase; Reviewed	98.57
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.57
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.56
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.55
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.55
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.54
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.54
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.54
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.54
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.53
PRK09126	392	hypothetical protein; Provisional	98.53
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.52
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.52
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.52
PRK08163	396	salicylate hydroxylase; Provisional	98.51
PRK06185	407	hypothetical protein; Provisional	98.51
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.5
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.5
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.5
PRK07121	492	hypothetical protein; Validated	98.49
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.49
PRK08013	400	oxidoreductase; Provisional	98.49
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.49
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.48
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.48
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.47
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.47
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.46
PRK14694	468	putative mercuric reductase; Provisional	98.46
PRK08274	466	tricarballylate dehydrogenase; Validated	98.45
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.45
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.45
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.45
PRK06847	375	hypothetical protein; Provisional	98.45
PRK13748	561	putative mercuric reductase; Provisional	98.44
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.44
COG3349	485	Uncharacterized conserved protein [Function unknow	98.44
PLN02985	514	squalene monooxygenase	98.44
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.43
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.43
PRK06126	545	hypothetical protein; Provisional	98.43
PLN02697	529	lycopene epsilon cyclase	98.43
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.43
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.43
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.43
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.42
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.42
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.42
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.42
PRK12831	464	putative oxidoreductase; Provisional	98.41
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.41
PRK06184	502	hypothetical protein; Provisional	98.41
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.4
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.4
PRK07190	487	hypothetical protein; Provisional	98.4
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.4
TIGR02053	463	MerA mercuric reductase. This model represents the	98.4
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.4
PRK08244	493	hypothetical protein; Provisional	98.39
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.39
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.38
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.38
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.38
PLN02529	738	lysine-specific histone demethylase 1	98.37
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.37
PRK06753	373	hypothetical protein; Provisional	98.37
PLN02676	487	polyamine oxidase	98.36
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.36
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.35
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.35
PRK07236	386	hypothetical protein; Provisional	98.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.35
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.35
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.34
PRK02106	560	choline dehydrogenase; Validated	98.34
PTZ00058	561	glutathione reductase; Provisional	98.34
PRK11445	351	putative oxidoreductase; Provisional	98.33
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.33
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.33
PRK07538	413	hypothetical protein; Provisional	98.32
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.32
PRK14727	479	putative mercuric reductase; Provisional	98.32
PTZ00052	499	thioredoxin reductase; Provisional	98.32
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.31
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.31
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.31
PRK06834	488	hypothetical protein; Provisional	98.3
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.3
PRK07804	541	L-aspartate oxidase; Provisional	98.3
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.3
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.3
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.29
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.29
PLN02507	499	glutathione reductase	98.28
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.28
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.28
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.27
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.27
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.27
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.27
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.27
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.26
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.25
PRK07588	391	hypothetical protein; Provisional	98.25
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.25
PLN02612	567	phytoene desaturase	98.25
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.25
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.25
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.25
PRK05868	372	hypothetical protein; Validated	98.24
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.24
PRK12839	572	hypothetical protein; Provisional	98.24
PRK06475	400	salicylate hydroxylase; Provisional	98.24
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.24
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.23
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.23
PLN02815	594	L-aspartate oxidase	98.22
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.22
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.21
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.21
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.21
PRK10262	321	thioredoxin reductase; Provisional	98.21
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK06996	398	hypothetical protein; Provisional	98.2
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.2
COG0579	429	Predicted dehydrogenase [General function predicti	98.19
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.18
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.18
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.18
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
PTZ00367	567	squalene epoxidase; Provisional	98.17
PLN03000	881	amine oxidase	98.17
PRK07395	553	L-aspartate oxidase; Provisional	98.17
PRK05257	494	malate:quinone oxidoreductase; Validated	98.17
PRK08294	634	phenol 2-monooxygenase; Provisional	98.17
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.16
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.16
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.16
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
PRK06175	433	L-aspartate oxidase; Provisional	98.16
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.15
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.15
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.15
PLN02546	558	glutathione reductase	98.14
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.14
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.14
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.13
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.13
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.13
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.13
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.12
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.11
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.1
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.1
PLN02852	491	ferredoxin-NADP+ reductase	98.09
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.09
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.09
PLN02487	569	zeta-carotene desaturase	98.08
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.07
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.07
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.05
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.05
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.05
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.05
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.04
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.04
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.03
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.03
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.02
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.01
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.01
PRK08275	554	putative oxidoreductase; Provisional	98.0
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.0
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.99
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.98
PRK08401	466	L-aspartate oxidase; Provisional	97.97
PRK09077	536	L-aspartate oxidase; Provisional	97.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.96
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.96
PRK08071	510	L-aspartate oxidase; Provisional	97.95
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.95
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.95
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.95
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.94
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.94
COG3573	552	Predicted oxidoreductase [General function predict	97.92
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.92
PLN02976	1713	amine oxidase	97.9
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.89
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.88
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.87
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.86
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.86
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.84
PLN02785	587	Protein HOTHEAD	97.82
KOG2852	380	consensus Possible oxidoreductase [General functio	97.81
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.8
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.79
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.78
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.78
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.77
PRK13984	604	putative oxidoreductase; Provisional	97.77
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.77
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.76
PTZ00188	506	adrenodoxin reductase; Provisional	97.76
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.73
PRK07512	513	L-aspartate oxidase; Provisional	97.71
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.7
PRK07846	451	mycothione reductase; Reviewed	97.69
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.62
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.61
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.61
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.58
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.53
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.49
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.47
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.4
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.35
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.35
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.34
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.3
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.27
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.25
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.24
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.23
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.18
PRK09897	534	hypothetical protein; Provisional	97.17
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.16
KOG2853	509	consensus Possible oxidoreductase [General functio	97.16
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.15
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.12
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.04
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	96.96
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.91
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.91
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.9
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.87
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.74
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.72
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.71
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	96.7
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.66
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.63
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.59
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.55
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.51
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.38
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.31
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.24
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.23
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.21
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.19
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.18
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.18
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.15
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.12
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.11
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.06
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.98
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.97
TIGR02053	463	MerA mercuric reductase. This model represents the	95.96
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.94
PRK06370	463	mercuric reductase; Validated	95.87
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.86
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.84
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.82
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.78
PRK07846	451	mycothione reductase; Reviewed	95.75
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.73
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.73
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.71
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.7
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.68
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.67
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.67
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.63
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.55
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.54
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.54
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.54
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.29
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.29
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.27
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.27
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.26
PRK07845	466	flavoprotein disulfide reductase; Reviewed	95.22
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.21
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.21
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.18
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.16
PRK06116	450	glutathione reductase; Validated	95.15
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	95.14
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.11
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.1
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.04
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.01
PLN02507	499	glutathione reductase	94.99
PTZ00058	561	glutathione reductase; Provisional	94.98
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.97
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.92
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.92
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.91
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.91
PRK13748	561	putative mercuric reductase; Provisional	94.9
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.86
PRK14694	468	putative mercuric reductase; Provisional	94.84
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.83
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.81
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.8
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.8
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.79
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.74
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.67
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.67
PRK10262	321	thioredoxin reductase; Provisional	94.65
PRK14727	479	putative mercuric reductase; Provisional	94.6
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.58
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	94.53
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.52
PRK12831	464	putative oxidoreductase; Provisional	94.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.47
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.46
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.45
PTZ00052	499	thioredoxin reductase; Provisional	94.45
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.44
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.41
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	94.4
PLN02546	558	glutathione reductase	94.37
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.36
PRK12770	352	putative glutamate synthase subunit beta; Provisio	94.36
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.2
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.16
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.12
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	94.07
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.0
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.93
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.89
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.85
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.82
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.82
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.81
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.8
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	93.79
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.78
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.77
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.76
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.76
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.75
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.72
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.72
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.68
PRK04148	134	hypothetical protein; Provisional	93.67
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.63
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.59
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.58
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.57
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.56
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.56
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.53
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.52
KOG2755	334	consensus Oxidoreductase [General function predict	93.49
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	93.47
PRK10669	558	putative cation:proton antiport protein; Provision	93.46
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.46
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.39
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.36
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.32
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.27
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.26
PRK05866	293	short chain dehydrogenase; Provisional	93.26
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.23
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.22
PRK07417	279	arogenate dehydrogenase; Reviewed	93.18
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.17
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.14
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.07
PRK08328	231	hypothetical protein; Provisional	93.05
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	92.96
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.94
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.93
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.92
PRK06223	307	malate dehydrogenase; Reviewed	92.85
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.82
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.8
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.79
PRK09496	453	trkA potassium transporter peripheral membrane com	92.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.76
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.73
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.73
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.72
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.71
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.64
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.61
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.58
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	92.55
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.54
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.52
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	92.44
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.4
PRK08223	287	hypothetical protein; Validated	92.33
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.33
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.28
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.15
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.97
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.94
PRK09496	453	trkA potassium transporter peripheral membrane com	91.89
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	91.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.78
PTZ00117	319	malate dehydrogenase; Provisional	91.68
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.52
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.51
PLN02494	477	adenosylhomocysteinase	91.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.36
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.34
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.3
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.28
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	91.27
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.27
PRK03659	601	glutathione-regulated potassium-efflux system prot	91.23
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.22
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.21
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.18
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	91.14
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.12
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	91.11
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.09
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	91.02
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.88
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	90.83
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	90.78
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	90.75
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	90.75
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.74
PRK07411	390	hypothetical protein; Validated	90.72
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	90.64
PRK08017	256	oxidoreductase; Provisional	90.62
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.6
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	90.58
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.58
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.54
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.53
PTZ00075	476	Adenosylhomocysteinase; Provisional	90.53
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	90.51
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.44
PLN00112	444	malate dehydrogenase (NADP); Provisional	90.42
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.38

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1.5e-10  Score=83.35  Aligned_cols=63  Identities=32%  Similarity=0.412  Sum_probs=52.4

Q ss_pred             CchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419            3 ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ....+|++++.+.+++-...      -...||+|+|+||+|+++|++|+++|++|+++|+.-.+||..|
T Consensus         8 ~~E~~itraI~~~~~~~l~~------~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635           8 LREVKITRAITERYFEDLLD------YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hhhHHHHHHHHHHHHHHHHh------hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            45678889988777654433      3467999999999999999999999999999999988887654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.00  E-value=6.5e-10  Score=81.74  Aligned_cols=63  Identities=33%  Similarity=0.390  Sum_probs=53.9

Q ss_pred             CCCchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419            1 MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |....++|++++.+.+++-...      ...+||+|||+|++|+.+|+.|+++|++|+++|+...+|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~------~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg   63 (257)
T PRK04176          1 MELDEVKITRAIVEEYFEKLLD------YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG   63 (257)
T ss_pred             CCchHHHHHHHHHHHHHHHHHH------hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            4567789999999887765555      55789999999999999999999999999999999877764

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.95  E-value=2.9e-09  Score=84.87  Aligned_cols=72  Identities=25%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhh
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITI   99 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~   99 (119)
                      ..+..+|+|||||++|+++|.+|...|++|+|+|.++.+||+.++.....+-++..+..+-.+...||+..+
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l   83 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALL   83 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHH
Confidence            356789999999999999999999999999999999999999887766555555555555555556666553

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.92  E-value=1.7e-09  Score=79.49  Aligned_cols=59  Identities=34%  Similarity=0.423  Sum_probs=48.8

Q ss_pred             HHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419            6 STIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +.|+++|.+.+++-...      ...+|++|||+|++|+.+|+.|++.|++|+++||...+|+..
T Consensus         2 ~~~~~~~~~~~~~~~~~------~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292         2 SKISRAIVERYFEDLLD------YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             chhHHHHHHHHHHHHHH------hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            46778887776554433      357899999999999999999999999999999998887653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.92  E-value=4.9e-10  Score=80.45  Aligned_cols=43  Identities=42%  Similarity=0.421  Sum_probs=35.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+|++|||+||+|+++|+.|++.|++|+++|+...+|+..+
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            4578999999999999999999999999999999988887543

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.88  E-value=4.9e-09  Score=80.85  Aligned_cols=86  Identities=22%  Similarity=0.249  Sum_probs=60.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCc---hhhhHHHHHHH
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNP---MITIQSTAYCL  106 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p---~~~~~~~a~~~  106 (119)
                      +.+||+|||+|++|+.||..++++|.+|+|+|+.+.+|.+....-.|...+..... ......-+|   .+-..+++...
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCC
Confidence            46899999999999999999999999999999999988664333223333322222 344555566   66667777777


Q ss_pred             HHHHHHHHhh
Q 033419          107 SKRIAESLRE  116 (119)
Q Consensus       107 ~~~l~~~l~~  116 (119)
                      .+++..-+..
T Consensus        81 ~~d~i~~~e~   90 (408)
T COG2081          81 PEDFIDWVEG   90 (408)
T ss_pred             HHHHHHHHHh
Confidence            7777665543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.83  E-value=7.9e-09  Score=82.02  Aligned_cols=44  Identities=41%  Similarity=0.555  Sum_probs=39.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ..+|++|||+|+.||++|..|+++|++|+|+||++..||...+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~   45 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF   45 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence            46899999999999999999999999999999999999875443

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.83  E-value=1e-08  Score=60.98  Aligned_cols=38  Identities=39%  Similarity=0.531  Sum_probs=34.1

Q ss_pred             EECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           36 IVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        36 iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      |||+|++|+.+|+.|++.|++|+|+|+.+.+||.....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999999999999999999999876544

...

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.82  E-value=9.1e-09  Score=77.64  Aligned_cols=54  Identities=31%  Similarity=0.515  Sum_probs=47.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccC----------CCceEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLE----------AEGLYVCDA   84 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~----------~~~l~~~~~   84 (119)
                      .+|++|||+|.+|+.+|..+++.|.+|+|+||++++||+.+...+          ||++|+++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~   64 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDN   64 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCc
Confidence            379999999999999999889999999999999999999886655          677777664

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.81  E-value=6.3e-09  Score=80.40  Aligned_cols=41  Identities=49%  Similarity=0.629  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +.+||+|||+||+|+++|+.|++.|++|+++|++..+|...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~   42 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP   42 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence            47899999999999999999999999999999998888654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.75  E-value=6.5e-08  Score=73.54  Aligned_cols=35  Identities=37%  Similarity=0.511  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~   35 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP   35 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            69999999999999999999999999999997654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02268 probable polyamine oxidase

Probab=98.74  E-value=3.3e-08  Score=76.80  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      .+|+|||+|++|+++|+.|.++|++|+|+|+.+.+||+.++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~   42 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD   42 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence            479999999999999999999999999999999999987654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.74  E-value=1e-07  Score=73.40  Aligned_cols=45  Identities=38%  Similarity=0.411  Sum_probs=37.5

Q ss_pred             cCCccccccccccEEEECCChHHHHHHHHHHHc-CC-cEEEEecCCc
Q 033419           21 KDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASA-GQ-KVVVIEKGNY   65 (119)
Q Consensus        21 ~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~-g~-~v~v~e~~~~   65 (119)
                      .+....+...++||+|||||++|+++|++|+++ |. +|+|+|+...
T Consensus        20 ~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        20 PAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             cccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            344455556789999999999999999999985 85 8999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07208 hypothetical protein; Provisional

Probab=98.74  E-value=2.5e-08  Score=78.34  Aligned_cols=45  Identities=31%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      |+...||+|||||++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s   45 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT   45 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence            356779999999999999999999999999999999999987544

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.73  E-value=1.8e-08  Score=78.67  Aligned_cols=39  Identities=49%  Similarity=0.664  Sum_probs=35.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ..|||+|||+||+|+++|+.|+++|++|+|+|+...++.
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~   42 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA   42 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence            469999999999999999999999999999999876653

>PRK10015 oxidoreductase; Provisional

Probab=98.73  E-value=1.7e-08  Score=78.96  Aligned_cols=40  Identities=45%  Similarity=0.650  Sum_probs=36.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...|||+|||+||+|+++|+.|++.|++|+|+|+.+.+|.
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~   42 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC   42 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            3569999999999999999999999999999999876653

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.72  E-value=3.5e-08  Score=77.03  Aligned_cols=37  Identities=35%  Similarity=0.593  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      |||+|||||++|+.||..+++.|++|+|+|+++..|-
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk   37 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK   37 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc
Confidence            7999999999999999999999999999999988873

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.69  E-value=3.1e-08  Score=77.60  Aligned_cols=44  Identities=32%  Similarity=0.334  Sum_probs=39.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      .+..||++|||+|++|+.+|..|++.|++|+++|+...+||.+.
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~   45 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT   45 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence            34579999999999999999999999999999999878888753

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.68  E-value=1.3e-07  Score=71.79  Aligned_cols=34  Identities=38%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +||+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.68  E-value=1.5e-07  Score=71.51  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=34.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +++||+|||||++|+++|+.|+++|++|+|+|++...+
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~   39 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPH   39 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            46899999999999999999999999999999986543

>PLN02576 protoporphyrinogen oxidase

Probab=98.67  E-value=5.6e-08  Score=76.69  Aligned_cols=46  Identities=35%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCceeecc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      ..++||+|||||++||++|++|.+. |++|+|+|+.+.+||..++..
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~   56 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS   56 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec
Confidence            4567999999999999999999999 999999999999998865543

>TIGR02730 carot_isom carotene isomerase

Probab=98.65  E-value=6.2e-08  Score=76.76  Aligned_cols=42  Identities=36%  Similarity=0.447  Sum_probs=38.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      +|++|||+|++|+++|..|+++|++|+|+||+..+||.....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~   42 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYF   42 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEe
Confidence            689999999999999999999999999999999999875543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.65  E-value=4.9e-08  Score=76.94  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +....+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            45578999999999999999999999999999999875

>PLN02463 lycopene beta cyclase

Probab=98.64  E-value=2.8e-08  Score=78.31  Aligned_cols=55  Identities=22%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             HHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           11 SLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++.++++....+++....+|++|||+|++|+++|..|+++|++|+++|+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463          8 ETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             CCccccccccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            3445556666666666667789999999999999999999999999999998753

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.64  E-value=5.9e-08  Score=75.24  Aligned_cols=41  Identities=27%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCceeec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~~~   73 (119)
                      +|+|||||++|+++|+.|++.|  ++|+|+|+.+.+||..++.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~   44 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTV   44 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEE
Confidence            5999999999999999999987  8999999999999876654

>PRK07233 hypothetical protein; Provisional

Probab=98.64  E-value=5.5e-08  Score=74.90  Aligned_cols=40  Identities=35%  Similarity=0.421  Sum_probs=37.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS   40 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence            5899999999999999999999999999999999987544

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.63  E-value=1.3e-07  Score=70.34  Aligned_cols=75  Identities=25%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhHHHHHHHHHHHHH
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAE  112 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~l~~  112 (119)
                      |++|||+|++|+++|+.|+++|++|+|+|++ .++..... . ..+++....    ..........+...+...++++..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS~-~-~~g~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~   73 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGASG-R-SGGLVRPGI----SSYPDPQYARLARESVEFWRELAE   73 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGGG-S-SSEEEECSG----SHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccccccc-c-ccccccccc----cccccccccchhhhhccchhhhhh
Confidence            7999999999999999999999999999999 44432111 1 122221111    011122445566667777777755


Q ss_pred             HH
Q 033419          113 SL  114 (119)
Q Consensus       113 ~l  114 (119)
                      +.
T Consensus        74 ~~   75 (358)
T PF01266_consen   74 EY   75 (358)
T ss_dssp             HT
T ss_pred             hc
Confidence            44

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.62  E-value=7.7e-08  Score=75.09  Aligned_cols=43  Identities=26%  Similarity=0.291  Sum_probs=39.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCceeecc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      .|++|||||++|+++|+.|+++    |++|+|+|+.+.+||..++..
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~   49 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK   49 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe
Confidence            5899999999999999999998    999999999999999866543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.61  E-value=5.5e-08  Score=72.28  Aligned_cols=37  Identities=43%  Similarity=0.504  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .+||+|||||++|+.+|..|+++|++|+|+|+.+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence            4799999999999999999999999999999987543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06370 mercuric reductase; Validated

Probab=98.60  E-value=9.2e-08  Score=75.18  Aligned_cols=43  Identities=30%  Similarity=0.433  Sum_probs=37.5

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +|+.+||++|||+||+|+.+|.++++.|++|+++|+. .+||.+
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c   43 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC   43 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence            3566799999999999999999999999999999986 456654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.59  E-value=7.3e-08  Score=73.69  Aligned_cols=40  Identities=30%  Similarity=0.453  Sum_probs=36.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      |++..+||+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            5567799999999999999999999999999999998643

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.59  E-value=1e-07  Score=75.37  Aligned_cols=40  Identities=33%  Similarity=0.397  Sum_probs=37.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      .|++|||+|++|+++|..|+++|++|+|+|+++.+||...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~   41 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG   41 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            4899999999999999999999999999999999987643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.59  E-value=8.4e-08  Score=76.53  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      |+..+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G   43 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA   43 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            45679999999999999999999999999999999865444

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.59  E-value=9.1e-08  Score=75.73  Aligned_cols=40  Identities=35%  Similarity=0.447  Sum_probs=36.7

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      |+|||+|++||++|..|++.|++|+|+|+++.+||...+.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~   40 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL   40 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEE
Confidence            6899999999999999999999999999999999875543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=8.7e-08  Score=75.57  Aligned_cols=40  Identities=35%  Similarity=0.397  Sum_probs=36.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +||++|||+||+|+.+|..+++.|++|+|+|+...+||.+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c   42 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC   42 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence            5999999999999999999999999999999866778764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=8.8e-08  Score=75.68  Aligned_cols=43  Identities=30%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +.+||++|||+|++|+.+|..+++.|++|+|+|+.+.+||.+.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            4569999999999999999999999999999999877787643

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.58  E-value=9.1e-08  Score=76.13  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=36.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      |...+||+|||||++|+++|+.|+++|++|+|+|+++..+
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~   42 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ   42 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence            4567999999999999999999999999999999996543

>PLN02568 polyamine oxidase

Probab=98.58  E-value=2.6e-07  Score=74.37  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=40.8

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcC-----CcEEEEecCCcccCceeec
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAG-----QKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g-----~~v~v~e~~~~~g~~~~~~   73 (119)
                      |+.+..||+|||+|++|+++|..|++.|     ++|+|+|++..+||...+.
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            3456689999999999999999999877     8999999999999875543

>PRK06116 glutathione reductase; Validated

Probab=98.58  E-value=7.3e-08  Score=75.44  Aligned_cols=41  Identities=29%  Similarity=0.412  Sum_probs=36.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +.+||++|||+||+|+.+|..+++.|++|+|+|+. .+||.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c   42 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC   42 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence            35799999999999999999999999999999986 567654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.58  E-value=3e-07  Score=69.87  Aligned_cols=39  Identities=44%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..++|++|||+|++|+++|+.|++.|.+|+++|+....+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            457899999999999999999999999999999887655

>PLN02661 Putative thiazole synthesis

Probab=98.58  E-value=7.9e-08  Score=73.68  Aligned_cols=42  Identities=33%  Similarity=0.335  Sum_probs=37.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~~   70 (119)
                      ...+|++|||+|++|+.+|+.|++. |++|+++|+...+|+..
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            4578999999999999999999975 89999999998877643

>PRK07045 putative monooxygenase; Reviewed

Probab=98.57  E-value=8.3e-08  Score=73.51  Aligned_cols=39  Identities=33%  Similarity=0.444  Sum_probs=35.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ++..+||+||||||+|+++|..|+++|++|+|+|+.+..
T Consensus         2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            346789999999999999999999999999999998754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.57  E-value=2.9e-07  Score=70.83  Aligned_cols=38  Identities=32%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~   68 (119)
                      .+||+|||||++|+++|+.|+++  |++|+|+|+...++.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~   41 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPAR   41 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccc
Confidence            47999999999999999999998  999999999875543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.56  E-value=1.4e-07  Score=74.42  Aligned_cols=43  Identities=35%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...||++|||+|++|+.+|..+++.|++|+|+|+. .+||.+..
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            45799999999999999999999999999999986 67776543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.55  E-value=9.7e-08  Score=73.25  Aligned_cols=37  Identities=38%  Similarity=0.527  Sum_probs=34.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            4678999999999999999999999999999999764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.55  E-value=1.2e-07  Score=69.18  Aligned_cols=36  Identities=42%  Similarity=0.626  Sum_probs=33.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      |||+|||+|++|+.+|..|++.|++|+|+|+....+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~   36 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR   36 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            699999999999999999999999999999987654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.54  E-value=9.5e-08  Score=75.28  Aligned_cols=46  Identities=24%  Similarity=0.491  Sum_probs=41.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      |+..|||+|||+|.+|+.+|..|++.|.+|+++|+++.+||..++.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence            3568999999999999999999999999999999999999986643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.54  E-value=1.5e-07  Score=72.55  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=35.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +...+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            345789999999999999999999999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.54  E-value=1.5e-07  Score=73.58  Aligned_cols=42  Identities=36%  Similarity=0.468  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC-cccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN-YFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~-~~g~~~~   71 (119)
                      +.||++|||+|++|+.+|.+|++.|++|+|+|+.+ .+||.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            36999999999999999999999999999999875 3566543

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.54  E-value=2.4e-07  Score=71.66  Aligned_cols=42  Identities=38%  Similarity=0.528  Sum_probs=38.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      +|++|||+|++|+++|.+|++.|.+|+|+|+++.+||..++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            689999999999999999999999999999999888875543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.53  E-value=1.8e-07  Score=73.31  Aligned_cols=40  Identities=43%  Similarity=0.587  Sum_probs=36.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +||++|||+|++|+.+|..|++.|++|+|+|+ +.+||.+.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~   40 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL   40 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence            48999999999999999999999999999999 67788654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09126 hypothetical protein; Provisional

Probab=98.53  E-value=1.3e-07  Score=72.35  Aligned_cols=35  Identities=40%  Similarity=0.567  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            68999999999999999999999999999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.52  E-value=1.3e-07  Score=72.72  Aligned_cols=32  Identities=38%  Similarity=0.685  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      |||+|||+||+|+++|+.|++.|++|+++|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            69999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.52  E-value=1.8e-07  Score=73.57  Aligned_cols=41  Identities=24%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ++||++|||+||+|+.+|..+++.|++|+++|+. .+||.+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            3699999999999999999999999999999986 4677643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.52  E-value=1.2e-07  Score=72.58  Aligned_cols=37  Identities=35%  Similarity=0.438  Sum_probs=34.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus         2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            3567999999999999999999999999999999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.51  E-value=1.8e-07  Score=71.61  Aligned_cols=39  Identities=38%  Similarity=0.475  Sum_probs=35.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ++..||+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            356799999999999999999999999999999987654

>PRK06185 hypothetical protein; Provisional

Probab=98.51  E-value=1.7e-07  Score=72.11  Aligned_cols=38  Identities=37%  Similarity=0.407  Sum_probs=34.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +...+||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            34679999999999999999999999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.50  E-value=2e-07  Score=73.04  Aligned_cols=40  Identities=30%  Similarity=0.438  Sum_probs=36.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +||++|||+||+|+.+|..+++.|++|+|+|+. .+||...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence            589999999999999999999999999999985 5777644

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.50  E-value=2.2e-07  Score=72.98  Aligned_cols=41  Identities=37%  Similarity=0.537  Sum_probs=37.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ..||++|||+|++|+.+|..+++.|++|+++|+.. +||.+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~   43 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL   43 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence            46999999999999999999999999999999887 777643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.50  E-value=2.3e-07  Score=72.47  Aligned_cols=41  Identities=34%  Similarity=0.549  Sum_probs=36.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc-ccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY-FTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~-~g~~~   70 (119)
                      ++||++|||+|++|+.+|..+++.|++|+|+|+.+. +||.+
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c   43 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC   43 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence            369999999999999999999999999999999864 56653

>PRK07121 hypothetical protein; Validated

Probab=98.49  E-value=2.8e-07  Score=73.11  Aligned_cols=43  Identities=35%  Similarity=0.492  Sum_probs=38.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +...+||+|||+|.+|+++|+.+++.|.+|+|+||....|++.
T Consensus        17 ~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         17 WDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             cCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            3568999999999999999999999999999999998877654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.49  E-value=1.6e-07  Score=73.47  Aligned_cols=39  Identities=46%  Similarity=0.642  Sum_probs=32.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ||+|||||++|+.+|..+++.|.+|+|+|+...+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            899999999999999999999999999999999998643

>PRK08013 oxidoreductase; Provisional

Probab=98.49  E-value=1.8e-07  Score=72.20  Aligned_cols=35  Identities=37%  Similarity=0.464  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||+|||+||+|+++|..|+++|++|+|+|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            58999999999999999999999999999999865

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.49  E-value=2.7e-07  Score=72.97  Aligned_cols=43  Identities=30%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ....+|+|||+|++|+.+|..|.+.|++++++|+++.+||.+.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~   50 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV   50 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence            4468999999999999999999999999999999999998753

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.48  E-value=1.5e-07  Score=72.40  Aligned_cols=34  Identities=32%  Similarity=0.636  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++||+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            5799999999999999999999999999999976

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.48  E-value=3.5e-07  Score=72.98  Aligned_cols=43  Identities=37%  Similarity=0.389  Sum_probs=38.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +..++||+|||+|.+|+++|+.+++.|.+|+|+||.+..|++.
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            3457899999999999999999999999999999998877653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.47  E-value=2.4e-07  Score=70.67  Aligned_cols=37  Identities=35%  Similarity=0.475  Sum_probs=34.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +.+||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            4689999999999999999999999999999998764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.47  E-value=4.4e-07  Score=71.44  Aligned_cols=45  Identities=31%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCcccCcee
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTPKDY   71 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~~~~   71 (119)
                      +...++||+|||+|++|+++|++|.+.|.. ++++|++..+|+.++
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~   49 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR   49 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence            346789999999999999999999999998 999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.46  E-value=2.4e-07  Score=71.08  Aligned_cols=34  Identities=41%  Similarity=0.644  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4899999999999999999999999999999874

>PRK14694 putative mercuric reductase; Provisional

Probab=98.46  E-value=3.3e-07  Score=72.23  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=37.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +...||++|||+|++|+.+|..|++.|++|+++|++ .+||.+.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            457899999999999999999999999999999986 5676643

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.45  E-value=3.1e-07  Score=72.16  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc--ccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY--FTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~--~g~~   69 (119)
                      ...+||+|||+|++|+++|+.+++.|.+|+|+||...  .|++
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~   44 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN   44 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence            4568999999999999999999999999999999874  4543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.45  E-value=3.9e-07  Score=71.73  Aligned_cols=41  Identities=41%  Similarity=0.539  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      .+||++|||+|++|+.+|.++++.|.+|+|+|++ .+||.+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~   43 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL   43 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            4699999999999999999999999999999986 4566543

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.45  E-value=6.3e-07  Score=70.55  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~   65 (119)
                      ..++||+|||+|.+|+++|++|+++  |.+|+|+|++..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4568999999999999999999997  899999999764

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.45  E-value=4e-07  Score=67.64  Aligned_cols=38  Identities=39%  Similarity=0.524  Sum_probs=35.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+++|||+|++|++||+.|+..|++|+|+||+...||+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR   39 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR   39 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccc
Confidence            46999999999999999999999999999999988876

>PRK06847 hypothetical protein; Provisional

Probab=98.45  E-value=3.2e-07  Score=69.68  Aligned_cols=38  Identities=37%  Similarity=0.428  Sum_probs=34.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+..||+|||+|++|+++|..|++.|++|+|+|+.+.+
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            34679999999999999999999999999999998653

>PRK13748 putative mercuric reductase; Provisional

Probab=98.44  E-value=8.4e-07  Score=71.21  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ..||++|||+|++|+.+|.++++.|++|+|+|++ .+||.+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            4699999999999999999999999999999987 6777643

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.44  E-value=3.5e-07  Score=73.64  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=34.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~   41 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA   41 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence            34699999999999999999999999999999997643

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=3.6e-07  Score=72.40  Aligned_cols=41  Identities=37%  Similarity=0.361  Sum_probs=38.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      +|+|+|+|.+|+++|+.|+++|++|+|+|+++..||+..+.
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~   42 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW   42 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence            69999999999999999999999999999999999986543

>PLN02985 squalene monooxygenase

Probab=98.44  E-value=4.7e-07  Score=72.51  Aligned_cols=38  Identities=42%  Similarity=0.579  Sum_probs=34.5

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .....+||+|||+|++|+++|..|++.|++|+|+|+..
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            34567899999999999999999999999999999874

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.43  E-value=3.2e-07  Score=71.05  Aligned_cols=35  Identities=37%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +||+|||+||+|+++|+.|+++|++|+++|+....
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            58999999999999999999999999999997543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.43  E-value=5.6e-07  Score=70.38  Aligned_cols=40  Identities=33%  Similarity=0.415  Sum_probs=36.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|+|||+|++|+++|+.|.++|++|+|+|+.+.+||..++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA   40 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence            5899999999999999999999999999999999986543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06126 hypothetical protein; Provisional

Probab=98.43  E-value=4.1e-07  Score=72.79  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      |.+..+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            345679999999999999999999999999999999864

>PLN02697 lycopene epsilon cyclase

Probab=98.43  E-value=4.1e-07  Score=73.13  Aligned_cols=50  Identities=24%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             CcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           16 GLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+..+..+.+ +....+||+|||+||+|+++|..+++.|++|+++|+...+
T Consensus        94 ~~~~~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697         94 KIADKLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             cccccCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            3333333333 3455799999999999999999999999999999986443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.43  E-value=2.9e-07  Score=71.01  Aligned_cols=34  Identities=35%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4689999999999999999999999999999986

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.43  E-value=3.7e-07  Score=71.60  Aligned_cols=40  Identities=40%  Similarity=0.487  Sum_probs=35.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..||++|||+|++|+.+|..|++.|++|+++|+ ..+||.+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~   41 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTC   41 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccce
Confidence            459999999999999999999999999999999 5667654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.43  E-value=3.1e-07  Score=69.68  Aligned_cols=34  Identities=41%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ||+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            7999999999999999999999999999999754

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.42  E-value=4e-07  Score=70.31  Aligned_cols=37  Identities=43%  Similarity=0.616  Sum_probs=33.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ||+|||+|.+|+.+|..++++|.+|+|+||.+..+++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~   37 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS   37 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence            8999999999999999999999999999999988874

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.42  E-value=2.9e-06  Score=69.64  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=33.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +||+|||+|++|+++|+.|+++|++|+|+|+...++
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~  296 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA  296 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            699999999999999999999999999999986443

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.42  E-value=4.5e-07  Score=69.96  Aligned_cols=36  Identities=28%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +||+|||+|.+|+++|++|++.|.+|+|+|+++.++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~   37 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA   37 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            599999999999999999999999999999987543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.42  E-value=4.7e-07  Score=71.00  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             cEEEECCChHHHHHHHHHHHc------CCcEEEEecCCcccCceeecc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA------GQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~------g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      +|+|||||++|+++|+.|++.      |++|+|+|+.+.+||..++..
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~   50 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE   50 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe
Confidence            599999999999999999985      479999999999999876543

>PRK12831 putative oxidoreductase; Provisional

Probab=98.41  E-value=7.2e-07  Score=70.53  Aligned_cols=41  Identities=29%  Similarity=0.251  Sum_probs=36.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ....|++|||+|++|+++|+.|++.|++|+|+|+.+.+||.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~  178 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGV  178 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCe
Confidence            34578999999999999999999999999999998877764

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.41  E-value=3.7e-07  Score=70.39  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||+|||+|++|+++|..|+++|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            47999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06184 hypothetical protein; Provisional

Probab=98.41  E-value=4e-07  Score=72.24  Aligned_cols=37  Identities=38%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +.+||+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.40  E-value=4.5e-07  Score=73.10  Aligned_cols=40  Identities=28%  Similarity=0.367  Sum_probs=35.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...||++|||||++|+.+|..+++.|++|+|+|++ .+||.
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~   41 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQ   41 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCce
Confidence            34699999999999999999999999999999986 45554

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.40  E-value=4.1e-07  Score=69.57  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ||+|||+|++|+.+|+.|++.|++|+|+|+.+..++
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~   36 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG   36 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence            799999999999999999999999999999876554

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07190 hypothetical protein; Provisional

Probab=98.40  E-value=4.3e-07  Score=72.22  Aligned_cols=38  Identities=29%  Similarity=0.341  Sum_probs=34.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +..+||+|||+||+|+.+|..|++.|++|+|+|+.+..
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            45689999999999999999999999999999998754

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.40  E-value=1.6e-06  Score=69.35  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-C-CcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-G-QKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g-~~v~v~e~~~~~g   67 (119)
                      ...+||+|||||+.|+++|+.|++. + .+|+|+|+.+.++
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a   83 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA   83 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence            3579999999999999999999985 3 6999999986543

>TIGR02053 MerA mercuric reductase

Probab=98.40  E-value=5.1e-07  Score=70.94  Aligned_cols=38  Identities=34%  Similarity=0.472  Sum_probs=34.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ||++|||+||+|+.+|..+++.|++|+++|+.. +||.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c   38 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC   38 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence            699999999999999999999999999999875 67764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.4e-06  Score=65.70  Aligned_cols=38  Identities=39%  Similarity=0.460  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~   68 (119)
                      +.+|++|||+||+|+++|.++++.+++ ++++|+. ..|+
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg   40 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGG   40 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCC
Confidence            468999999999999999999999999 6666654 3443

>PRK08244 hypothetical protein; Provisional

Probab=98.39  E-value=4.7e-07  Score=71.67  Aligned_cols=36  Identities=42%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+||+|||+||+|+++|..|++.|++|+|+|+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            479999999999999999999999999999998643

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.39  E-value=5.7e-07  Score=65.90  Aligned_cols=37  Identities=35%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +|++|||+|++|+.+|..|++.|++|+|+|+++ .|+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~   37 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ   37 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc
Confidence            689999999999999999999999999999886 4443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.38  E-value=5.4e-07  Score=73.69  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=35.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...+||+|||||+.|.++|+.|+++|++|+|+|+++...|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            3569999999999999999999999999999999865433

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.38  E-value=5.7e-07  Score=71.87  Aligned_cols=42  Identities=31%  Similarity=0.504  Sum_probs=37.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ++.++||+|||+| +|+++|+.+++.|.+|+|+||....|++.
T Consensus         4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            3458899999999 99999999999999999999998777654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.38  E-value=4.5e-07  Score=63.21  Aligned_cols=38  Identities=37%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             EEECCChHHHHHHHHHHHcCCc-EEEEecCCcccCceee
Q 033419           35 VIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTPKDYS   72 (119)
Q Consensus        35 ~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~~~~~   72 (119)
                      +|||||++|+++|..|.+.|++ ++++|+++.+|+.+..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            6999999999999999999998 9999999999987654

...

>PLN02529 lysine-specific histone demethylase 1

Probab=98.37  E-value=2e-06  Score=71.53  Aligned_cols=46  Identities=39%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeecc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      ....+|+|||+|++|+.+|..|++.|++|+|+|+.+.+||+.++..
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~  203 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK  203 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence            3568999999999999999999999999999999999999866543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.37  E-value=4.9e-07  Score=69.05  Aligned_cols=34  Identities=38%  Similarity=0.534  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc---CCcEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA---GQKVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~   63 (119)
                      ..+||+|||+|++|+++|+.|++.   |++|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            468999999999999999999998   9999999995

>PRK06753 hypothetical protein; Provisional

Probab=98.37  E-value=5.5e-07  Score=68.46  Aligned_cols=35  Identities=40%  Similarity=0.639  Sum_probs=32.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +|+|||||++|+++|..|+++|++|+|+|+.+.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            79999999999999999999999999999987543

>PLN02676 polyamine oxidase

Probab=98.36  E-value=2e-06  Score=68.48  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=38.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~~   72 (119)
                      ..+||+|||+|++|+++|+.|++.|. +|+|+|+++.+||...+
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~   68 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK   68 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence            46899999999999999999999998 69999999999987543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.36  E-value=4.6e-07  Score=66.95  Aligned_cols=36  Identities=50%  Similarity=0.840  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g   67 (119)
                      ||++|||+|.+|..+|.+|++.+ .+|+|+|++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            79999999999999999999987 6999999997644

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.35  E-value=5.6e-07  Score=68.53  Aligned_cols=34  Identities=38%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~   66 (119)
                      ||+|||+|++|+++|..|++.| ++|+|+|+.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            7999999999999999999999 999999998643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.35  E-value=5.9e-07  Score=69.16  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .+||+|||||++|+.+|..|++.|++|+|+|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            579999999999999999999999999999997

>PRK07236 hypothetical protein; Provisional

Probab=98.35  E-value=7.1e-07  Score=68.48  Aligned_cols=36  Identities=33%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            458999999999999999999999999999999863

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.35  E-value=6.7e-07  Score=68.81  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||+|||+|++|+++|..|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            57899999999999999999999999999999864

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.35  E-value=8.4e-07  Score=71.40  Aligned_cols=42  Identities=38%  Similarity=0.645  Sum_probs=37.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC--cccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN--YFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~--~~g~~~   70 (119)
                      ...+||+|||+|.+|+.+|..+++.|.+|+|+||.+  ..|++.
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            467899999999999999999999999999999998  566653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.34  E-value=7.7e-07  Score=70.33  Aligned_cols=34  Identities=47%  Similarity=0.601  Sum_probs=32.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ...||++|||+|++|+.+|..+++.|.+|+++|+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            3469999999999999999999999999999998

>PRK02106 choline dehydrogenase; Validated

Probab=98.34  E-value=6.5e-07  Score=72.11  Aligned_cols=39  Identities=28%  Similarity=0.512  Sum_probs=35.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY   65 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~   65 (119)
                      |+...||++|||+|.+|+.+|.+|++ .|++|+|+|++..
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            34567999999999999999999999 8999999999954

>PTZ00058 glutathione reductase; Provisional

Probab=98.34  E-value=1.2e-06  Score=70.90  Aligned_cols=42  Identities=31%  Similarity=0.519  Sum_probs=37.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...||++|||+|++|+.+|..+++.|.+|+++|+. .+||.+.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            36799999999999999999999999999999986 5777643

>PRK11445 putative oxidoreductase; Provisional

Probab=98.33  E-value=9.1e-07  Score=67.30  Aligned_cols=34  Identities=38%  Similarity=0.545  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +||+|||+||+|+++|..|++. ++|+++|+.+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999998743

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.33  E-value=9e-07  Score=71.58  Aligned_cols=42  Identities=40%  Similarity=0.662  Sum_probs=38.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+++|+.++++|.+|+|+||....|++.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            357899999999999999999999999999999998887764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.33  E-value=2.4e-06  Score=67.40  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhH
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQ  100 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  100 (119)
                      ...+|+|||||.+|+++|.+|-+.|. .++|+|..+.+||+.+++.-..+. +.-+.-|-.+..-||...+.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~-ielGAqwihG~~gNpVY~la   90 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGV-IELGAQWIHGEEGNPVYELA   90 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCe-EeecceeecCCCCChHHHHH
Confidence            45689999999999999999997766 799999999999998876655553 22333344445567766543

>PRK07538 hypothetical protein; Provisional

Probab=98.32  E-value=9.4e-07  Score=68.42  Aligned_cols=35  Identities=37%  Similarity=0.505  Sum_probs=32.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ||+|||||++|+++|..|+++|++|+|+|+.+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   36 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR   36 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence            79999999999999999999999999999987543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.32  E-value=9.3e-07  Score=68.95  Aligned_cols=37  Identities=43%  Similarity=0.513  Sum_probs=34.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcccCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPK   69 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g~~   69 (119)
                      ||+|||+|.+|+++|+.++++| .+|+|+||.+..|++
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~   38 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN   38 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence            7999999999999999999999 999999999887765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.32  E-value=1.3e-06  Score=69.21  Aligned_cols=44  Identities=30%  Similarity=0.358  Sum_probs=39.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ..++|++|||+|++|+.+|..+++.|.+|+++|+...+||.+..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            35799999999999999999999999999999998778887543

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.32  E-value=1.1e-06  Score=70.05  Aligned_cols=34  Identities=35%  Similarity=0.599  Sum_probs=31.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ...||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus         3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            3468999999999999999999999999999996

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.31  E-value=1.4e-06  Score=74.49  Aligned_cols=40  Identities=33%  Similarity=0.337  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+||||||+|+++|+.|++.|++|+|+|+.+.+||.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~  575 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV  575 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence            4579999999999999999999999999999998877765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.31  E-value=1.3e-06  Score=69.01  Aligned_cols=45  Identities=36%  Similarity=0.466  Sum_probs=39.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ...||++|||+|++|..+|.++++.|.+|.++|+...+||.+...
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            468999999999999999999999999999999997788765443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.31  E-value=7.9e-07  Score=68.16  Aligned_cols=35  Identities=37%  Similarity=0.536  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~   65 (119)
                      .+||+|||||++|+++|..|++.|  ++|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            379999999999999999999985  99999999764

>PRK06834 hypothetical protein; Provisional

Probab=98.30  E-value=9.8e-07  Score=70.17  Aligned_cols=36  Identities=36%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++||+|||+||+|+++|..|++.|++|+|+|+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            358999999999999999999999999999999764

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.30  E-value=7.9e-07  Score=69.52  Aligned_cols=32  Identities=41%  Similarity=0.488  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHH----cCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~   63 (119)
                      |||+|||||++|+++|+.|++    +|++|+|+|+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            699999999999999999998    79999999994

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.30  E-value=1.5e-06  Score=69.92  Aligned_cols=43  Identities=35%  Similarity=0.465  Sum_probs=38.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4566899999999999999999999999999999999876654

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.30  E-value=1.2e-06  Score=70.67  Aligned_cols=43  Identities=40%  Similarity=0.492  Sum_probs=38.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |++..+||+|||+|++|+++|..+++.|.+|+|+||....|++
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~   45 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS   45 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence            4566899999999999999999999999999999998877664

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.30  E-value=1.4e-06  Score=70.75  Aligned_cols=43  Identities=37%  Similarity=0.543  Sum_probs=38.8

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+..++||+|||+|.+|+.+|+.+++.|.+|+|+||....|++
T Consensus         7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835          7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            3456899999999999999999999999999999999877764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.29  E-value=8.8e-07  Score=67.80  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +||+|||||++|+++|..|++.|++|+|+|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            68999999999999999999999999999986

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.29  E-value=2.4e-06  Score=70.16  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+|++|+++|..|++.|++|+|+|+.+.+||.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~  365 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL  365 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence            4568999999999999999999999999999998877653

>PLN02507 glutathione reductase

Probab=98.28  E-value=1.4e-06  Score=69.53  Aligned_cols=34  Identities=35%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ..+||++|||+|++|+.+|.++++.|.+|+++|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            4579999999999999999999999999999996

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.28  E-value=2.6e-06  Score=67.21  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCceeec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~~~   73 (119)
                      .++|||||++||++||+|++.+  +.++|+|+.+..||...+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~   44 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV   44 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEE
Confidence            4899999999999999999999  8999999999999876554

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.28  E-value=2.1e-06  Score=73.12  Aligned_cols=40  Identities=33%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+||+|+++|+.|+++|++|+|+|+.+.+||.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~  344 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV  344 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence            3578999999999999999999999999999999877753

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.27  E-value=2.1e-06  Score=67.32  Aligned_cols=47  Identities=30%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLE   75 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~   75 (119)
                      .+..||+|+|+|.+|+.+|+.|.+.|++|+|+|.++.+||+..+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            46789999999999999999999999999999999999998766544

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.27  E-value=1.6e-06  Score=69.61  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=34.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+.+..
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            5789999999999999999999999999999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.27  E-value=1.5e-06  Score=69.63  Aligned_cols=39  Identities=36%  Similarity=0.432  Sum_probs=35.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ...+||+|||+|++|+.+|..|++.|++|+|+|+.+...
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456899999999999999999999999999999987543

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.27  E-value=5.6e-06  Score=65.91  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      +||+|||||++|+++|+.|++.  |.+|+|+|+...++
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a   38 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA   38 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence            5999999999999999999986  99999999976544

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.27  E-value=1.9e-06  Score=69.81  Aligned_cols=45  Identities=31%  Similarity=0.472  Sum_probs=39.6

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ......++||+|||+| +|+.+|..+++.|.+|+|+||.+.+||+.
T Consensus        10 ~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~   54 (564)
T PRK12845         10 TPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST   54 (564)
T ss_pred             CCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence            3345668999999999 89999999999999999999998888864

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.26  E-value=1.6e-06  Score=66.70  Aligned_cols=37  Identities=38%  Similarity=0.570  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      |++|||+|++|+++|+.|++.  |++|+++|+.+..+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            799999999999999999987  9999999998877764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.25  E-value=2.6e-06  Score=67.42  Aligned_cols=40  Identities=40%  Similarity=0.459  Sum_probs=36.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+++|||+|++|+.+|..|++.|++|+++|+.+.+|+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~  181 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL  181 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCce
Confidence            4569999999999999999999999999999998877653

>PRK07588 hypothetical protein; Provisional

Probab=98.25  E-value=2e-06  Score=66.01  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            7999999999999999999999999999998654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.25  E-value=1.3e-06  Score=71.25  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC-ccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN-YFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~-~~g   67 (119)
                      ...|||+|||||++|+.+|+.+++.|.+|+++|+.. .+|
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG   41 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG   41 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence            346999999999999999999999999999999873 444

>PLN02612 phytoene desaturase

Probab=98.25  E-value=4e-06  Score=67.87  Aligned_cols=43  Identities=33%  Similarity=0.386  Sum_probs=38.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ....+|+|||+|++|+++|++|.++|++|+++|+.+.+||...
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~  133 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA  133 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence            3457899999999999999999999999999999988887643

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.25  E-value=1.7e-06  Score=69.79  Aligned_cols=41  Identities=37%  Similarity=0.495  Sum_probs=37.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +.++||+|||+|.+|+++|..+++.|.+|+|+|+....|++
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            45789999999999999999999999999999998877765

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.25  E-value=2e-06  Score=69.93  Aligned_cols=43  Identities=40%  Similarity=0.395  Sum_probs=37.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +....+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~   50 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH   50 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            3456789999999999999999999999999999998765554

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.25  E-value=1.8e-06  Score=69.91  Aligned_cols=41  Identities=41%  Similarity=0.488  Sum_probs=36.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~   43 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH   43 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            35789999999999999999999999999999998765554

>PRK05868 hypothetical protein; Validated

Probab=98.24  E-value=1.9e-06  Score=66.14  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ||+|||+|++|+++|..|+++|++|+|+|+.+...
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~   37 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR   37 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence            79999999999999999999999999999987543

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.24  E-value=1.6e-06  Score=66.73  Aligned_cols=34  Identities=38%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHH--HHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVL--ASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l--~~~g~~v~v~e~~~~~   66 (119)
                      ||+|||+|++|+++|++|  ++.|++|+++|+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  7789999999998765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12839 hypothetical protein; Provisional

Probab=98.24  E-value=2e-06  Score=69.72  Aligned_cols=44  Identities=41%  Similarity=0.505  Sum_probs=39.5

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +++..+||+|||+|.+|+++|+.++++|.+|+|+|+...+|++.
T Consensus         4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~   47 (572)
T PRK12839          4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT   47 (572)
T ss_pred             CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            34568999999999999999999999999999999998877764

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.24  E-value=2e-06  Score=66.30  Aligned_cols=35  Identities=37%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            57999999999999999999999999999998754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.24  E-value=2.1e-06  Score=69.48  Aligned_cols=43  Identities=37%  Similarity=0.414  Sum_probs=37.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcC---CcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~~~g~~   69 (119)
                      |+...+||+|||+|.+|+.+|..+++.|   .+|+|+||....+++
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~   46 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH   46 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence            3456789999999999999999999998   899999999876654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.23  E-value=2.9e-06  Score=67.23  Aligned_cols=40  Identities=35%  Similarity=0.430  Sum_probs=36.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +++|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   40 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS   40 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence            4899999999999999999999999999999999886444

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.23  E-value=2.2e-06  Score=68.28  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=36.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc-CCcEEEEecC--------CcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKG--------NYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~--------~~~g~~~~   71 (119)
                      .+||++|||+|++|..+|..+++. |.+|+++|+.        ..+||.+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl   52 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV   52 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence            469999999999999999999997 9999999974        35777643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02815 L-aspartate oxidase

Probab=98.22  E-value=2e-06  Score=70.04  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .....+||+|||+|.+|+.+|..+++.| +|+|+||....+++
T Consensus        25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            4456799999999999999999999999 99999999887764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.22  E-value=4.9e-06  Score=69.79  Aligned_cols=43  Identities=40%  Similarity=0.396  Sum_probs=39.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...+|+|||+|++|+.+|+.|.++|++|+|+|+...+||+.++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t  279 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT  279 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence            4689999999999999999999999999999999999987443

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.21  E-value=2.1e-06  Score=66.13  Aligned_cols=35  Identities=40%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ||+|||||.+|+++|+.|+++|.+|+|+|+....+
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~   36 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA   36 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh
Confidence            79999999999999999999999999999985443

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.21  E-value=2.9e-06  Score=69.89  Aligned_cols=37  Identities=38%  Similarity=0.453  Sum_probs=34.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +.+..+|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3567899999999999999999999999999999975

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.21  E-value=2.3e-06  Score=69.91  Aligned_cols=41  Identities=32%  Similarity=0.267  Sum_probs=37.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..++||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~   67 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH   67 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence            45789999999999999999999999999999998876654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.21  E-value=2.5e-06  Score=63.91  Aligned_cols=40  Identities=28%  Similarity=0.227  Sum_probs=34.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +..+|++|||+|++|+.+|..+++.|++++++|+. ..|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~   43 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQ   43 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCc
Confidence            46789999999999999999999999999999965 44554

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=2.8e-06  Score=69.56  Aligned_cols=41  Identities=29%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            45789999999999999999999999999999998765543

>PRK06996 hypothetical protein; Provisional

Probab=98.20  E-value=1.8e-06  Score=66.55  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcC----CcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAG----QKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g----~~v~v~e~~~   64 (119)
                      |....+||+||||||+|+++|..|++.|    ++|+|+|+.+
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            5557799999999999999999999986    4799999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.20  E-value=6.4e-06  Score=65.87  Aligned_cols=40  Identities=30%  Similarity=0.416  Sum_probs=34.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+|++|||||++|+++|.++++.|+++++++..  +||..
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~  248 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQV  248 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCee
Confidence            34799999999999999999999999999999864  56653

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.19  E-value=1e-05  Score=63.61  Aligned_cols=42  Identities=29%  Similarity=0.395  Sum_probs=37.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~   71 (119)
                      +.+||+|||||+.|+++|+.|++..  ++|+|+||...++....
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS   45 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS   45 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence            4689999999999999999999987  99999999988875433

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.18  E-value=3e-06  Score=65.54  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g   67 (119)
                      +|+|||||++|+++|..|++.| ++|+|+|+.+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            6999999999999999999988 6999999987654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.18  E-value=4.7e-06  Score=71.48  Aligned_cols=40  Identities=35%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+||+|+++|..|+++|++|+|+|+.+.+||.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~  468 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV  468 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence            3568999999999999999999999999999998877653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.18  E-value=2.9e-06  Score=72.54  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+||+|+++|..+++.|++|+|+|+.+..||..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~  202 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSL  202 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCee
Confidence            46899999999999999999999999999999998887754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=2.9e-06  Score=69.11  Aligned_cols=41  Identities=37%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            35689999999999999999999999999999998765544

>PTZ00367 squalene epoxidase; Provisional

Probab=98.17  E-value=2.4e-06  Score=69.24  Aligned_cols=36  Identities=36%  Similarity=0.594  Sum_probs=33.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            357899999999999999999999999999999875

>PLN03000 amine oxidase

Probab=98.17  E-value=8e-06  Score=68.92  Aligned_cols=45  Identities=38%  Similarity=0.378  Sum_probs=41.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeecc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      ...+|+|||+|++|+.+|..|.+.|++|+|+|+.+.+||+.++..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~  227 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK  227 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence            468999999999999999999999999999999999999876553

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.17  E-value=3e-06  Score=68.50  Aligned_cols=42  Identities=33%  Similarity=0.420  Sum_probs=36.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+..+||+|||+|.+|+.+|..++ .|.+|+|+||....+++
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            3467899999999999999999986 49999999999876654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.17  E-value=2.5e-06  Score=68.08  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g   67 (119)
                      ..++||+|||||+.|+++|+.|++  .+.+|+|+||....+
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a   43 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA   43 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence            456899999999999999999998  478999999987554

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.17  E-value=2.8e-06  Score=69.60  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=34.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~   65 (119)
                      +...+||+||||||+|+.+|..|++ .|++|+|+|+.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            3457899999999999999999999 5999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.16  E-value=3.5e-06  Score=69.10  Aligned_cols=40  Identities=30%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            5689999999999999999999999999999998766654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.16  E-value=3.1e-06  Score=69.68  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ....+||+|||+|.+|+.+|..++++|++|+|+|+....++
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          2 KIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             CceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            34678999999999999999999999999999999876544

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=3.2e-06  Score=68.75  Aligned_cols=39  Identities=28%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            469999999999999999999999999999999876554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.16  E-value=5.1e-06  Score=65.36  Aligned_cols=41  Identities=29%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ....+++|||+|++|+.+|..|++.|++|+++|+.+.+|+.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~  178 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL  178 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcE
Confidence            34578999999999999999999999999999998876653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=3.6e-06  Score=69.07  Aligned_cols=39  Identities=38%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ...+||+|||+|.+|+.+|..+++.|.+|+|+|+....+
T Consensus        33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            357899999999999999999999999999999876554

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.16  E-value=3.1e-06  Score=66.42  Aligned_cols=39  Identities=33%  Similarity=0.473  Sum_probs=34.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|.+|+.+|..++ .|.+|+|+||....+++
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            5689999999999999999975 69999999999877665

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.15  E-value=3.4e-06  Score=66.66  Aligned_cols=42  Identities=31%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ....+++|||+|++||.+|..|.+.|+.++++||.+.+||-+
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW   45 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW   45 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence            346789999999999999999999999999999999999864

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.15  E-value=4.6e-06  Score=67.66  Aligned_cols=43  Identities=40%  Similarity=0.600  Sum_probs=38.6

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+...+||+|||+|.+|+.+|..++++|++|+|+|+....|++
T Consensus         8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~   50 (581)
T PRK06134          8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT   50 (581)
T ss_pred             CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            3456899999999999999999999999999999998877765

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.15  E-value=3.8e-06  Score=67.46  Aligned_cols=41  Identities=32%  Similarity=0.472  Sum_probs=37.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|++|||||+.|+.+|..++.+|++|+++|+++...|.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT   50 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT   50 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence            37899999999999999999999999999999999875543

>PLN02546 glutathione reductase

Probab=98.14  E-value=3.8e-06  Score=67.96  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      .+||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            469999999999999999999999999999996

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.14  E-value=6.9e-06  Score=66.57  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=37.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+++|||+|++||++|.+|.+.    |.+|+|+|+.+..||...
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            356899999999999999999984    689999999999998754

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.14  E-value=5.2e-06  Score=67.31  Aligned_cols=44  Identities=32%  Similarity=0.548  Sum_probs=39.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      .++.++|++|||+|.+|+.+|..++++|++|+|+|+....|+..
T Consensus        12 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~   55 (578)
T PRK12843         12 RWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT   55 (578)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            45568899999999999999999999999999999988777754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.13  E-value=9.5e-06  Score=63.87  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ....+++|||+|++|+.+|..|++.|++|+|+|+.+.+|+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~  171 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGV  171 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcE
Confidence            34679999999999999999999999999999998776653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.13  E-value=5.1e-06  Score=68.44  Aligned_cols=41  Identities=29%  Similarity=0.403  Sum_probs=36.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC-CcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG-NYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~-~~~g~~~~   71 (119)
                      +||++|||+|++|..+|..+++.|++|+++|+. ..+||.+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            799999999999999999999999999999975 35777644

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.13  E-value=7.5e-06  Score=67.13  Aligned_cols=60  Identities=23%  Similarity=0.259  Sum_probs=44.0

Q ss_pred             HHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419            6 STIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +.|.+...+.++......   ......+|+|||+|++|+++|+.|++.|++|+++|+.+.+||
T Consensus       288 r~~~d~~~~~~~~~~~~~---~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG  347 (639)
T PRK12809        288 RYITDTALAMGWRPDVSK---VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG  347 (639)
T ss_pred             HHHHHHHHHhCCCCCCCc---ccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            445554444555433221   112357899999999999999999999999999999987765

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.13  E-value=4.2e-06  Score=67.48  Aligned_cols=37  Identities=43%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~   37 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH   37 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            7999999999999999999999999999998765554

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.12  E-value=3.6e-06  Score=66.85  Aligned_cols=41  Identities=32%  Similarity=0.424  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..-+++|||||++|+.+|..|++.|++|.++|+++.+||+-
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm  163 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM  163 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence            34579999999999999999999999999999999999873

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.11  E-value=4.7e-06  Score=67.74  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4689999999999999999999999999999998766554

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.10  E-value=5.1e-06  Score=65.33  Aligned_cols=35  Identities=31%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            48999999999999999999999999999976544

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.10  E-value=1.3e-05  Score=63.52  Aligned_cols=39  Identities=31%  Similarity=0.426  Sum_probs=35.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...+++|||+|++|+.+|..|++.|++|+++|+.+.+||
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG  178 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG  178 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            456899999999999999999999999999999887664

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.09  E-value=6.7e-06  Score=65.69  Aligned_cols=40  Identities=30%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+||+|+.+|..|++  .|++|+|+|+.+.+||.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl   66 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL   66 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence            45689999999999999999987  79999999999887764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.09  E-value=5e-06  Score=71.08  Aligned_cols=40  Identities=33%  Similarity=0.392  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+|++|+++|+.|+++|++|+|+|+.+.+||.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~  577 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV  577 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc
Confidence            4568999999999999999999999999999998877765

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.09  E-value=5e-06  Score=57.69  Aligned_cols=33  Identities=52%  Similarity=0.639  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      |++|||+|++|+.+|..|++.+++++++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            699999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02487 zeta-carotene desaturase

Probab=98.08  E-value=1.7e-05  Score=64.49  Aligned_cols=42  Identities=29%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+++|||+|++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence            346899999999999999999999999999999999887543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.07  E-value=8.6e-06  Score=70.82  Aligned_cols=42  Identities=31%  Similarity=0.484  Sum_probs=38.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +..+||+|||+|.+|+.+|..+++.|.+|+|+||....||+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            467999999999999999999999999999999998877753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.07  E-value=5.9e-06  Score=68.83  Aligned_cols=40  Identities=30%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+|++|+++|..|+++|++|+|+|+.+.+||.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~  469 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV  469 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence            4568999999999999999999999999999998776654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=6.8e-06  Score=66.72  Aligned_cols=40  Identities=30%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +...+||+|||+|.+|+.+|+.+++. .+|+|+||....++
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            34578999999999999999999876 89999999876554

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.05  E-value=6e-06  Score=66.90  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|.+|+.+|+.+++.  |.+|+|+||....+++
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            357999999999999999999976  4899999998765553

>TIGR00551 nadB L-aspartate oxidase

Probab=98.05  E-value=7e-06  Score=65.20  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++||+|||+|.+|+.+|..+++.|. |+|+||....+++
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence            5799999999999999999999998 9999999766654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.05  E-value=8.3e-06  Score=64.86  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.05  E-value=2.7e-05  Score=62.33  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=34.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      +..+||+|||||++|+++|+.|++.  +.+|+|+|+.+.++
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            4568999999999999999999987  89999999955555

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.04  E-value=8.4e-06  Score=63.38  Aligned_cols=39  Identities=36%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|+|||||++|+++|..|+++|++|+|+|+...+.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            457999999999999999999999999999998766554

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.04  E-value=1.1e-05  Score=61.60  Aligned_cols=38  Identities=34%  Similarity=0.412  Sum_probs=35.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +....|++|||+|..|+++|+.|+++|.+++++|+-+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~   41 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL   41 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence            45678999999999999999999999999999999764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.03  E-value=6.9e-06  Score=66.16  Aligned_cols=39  Identities=28%  Similarity=0.300  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +|+|||||++|+.++..|.+.|++++++|+.+.+||.++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            699999999999999999999999999999999999764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.03  E-value=8.4e-06  Score=65.18  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+|++|||||++|+++|..+++.|++|+++|.  .+||..
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~  249 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV  249 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence            4579999999999999999999999999999974  355543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.02  E-value=1.3e-05  Score=62.23  Aligned_cols=35  Identities=34%  Similarity=0.543  Sum_probs=32.3

Q ss_pred             EEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           35 VIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        35 ~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +|||+|++|+.+|..++++|++|+|+|+.+.+|++
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k   35 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKK   35 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccc
Confidence            59999999999999999999999999999887754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.01  E-value=8.9e-06  Score=65.70  Aligned_cols=37  Identities=38%  Similarity=0.382  Sum_probs=34.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +||+|||+|++|+.+|+.|+++|++|+++|++...++
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence            6999999999999999999999999999999987764

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.01  E-value=8.8e-06  Score=66.44  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=34.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|.+|+.+|..+++.  |.+|+|+||....+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR   49 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence            468999999999999999999998  99999999987543

>PRK08275 putative oxidoreductase; Provisional

Probab=98.00  E-value=9.8e-06  Score=65.36  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~   66 (119)
                      ..+||+|||+|.+|+.+|..+++.  |.+|+|+||....
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            568999999999999999999876  7899999998764

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.00  E-value=9.9e-06  Score=63.78  Aligned_cols=36  Identities=33%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .||+|||||++|+.+|+.|++.|++|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            379999999999999999999999999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.99  E-value=9.7e-06  Score=65.85  Aligned_cols=41  Identities=29%  Similarity=0.381  Sum_probs=35.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      +..+||+|||+|.+|+.+|..+++.  |.+|+|+||....+++
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~   44 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH   44 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence            3468999999999999999999876  5799999999766654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.98  E-value=8.4e-06  Score=65.78  Aligned_cols=37  Identities=51%  Similarity=0.750  Sum_probs=34.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +..++|++|||+|.+|..+|.+|+..|++|+++|++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            4678999999999999999999999999999999984

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.97  E-value=1.2e-05  Score=63.52  Aligned_cols=34  Identities=41%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .||+|||+|.+|+.+|..+++.|.+|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999853

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.97  E-value=1.3e-05  Score=64.43  Aligned_cols=40  Identities=38%  Similarity=0.576  Sum_probs=35.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|.+|+.+|..+++. .+|+|+||....+++
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            4568999999999999999999886 899999999876654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.96  E-value=1.3e-05  Score=65.90  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+++|||+|++|+.+|+.|++.|++|+++|+.+.+||.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~  231 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM  231 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            3468999999999999999999999999999998877764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.96  E-value=1.2e-05  Score=65.27  Aligned_cols=40  Identities=28%  Similarity=0.328  Sum_probs=35.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      .++||+|||+|.+|+.+|..+++.  |.+|+|+||....+++
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~   43 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH   43 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence            368999999999999999999876  6899999999776654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.95  E-value=1.3e-05  Score=64.12  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+||+|||+|.+|+.+|..+++ |.+|+|+||....+++
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~   40 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN   40 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence            6799999999999999999876 8999999999876664

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.95  E-value=1.5e-05  Score=64.61  Aligned_cols=43  Identities=33%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++...+||+|||+|.+|+.+|..++++|++|+|+||....++.
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~   44 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH   44 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence            3456899999999999999999999999999999999877743

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.95  E-value=1.1e-05  Score=62.64  Aligned_cols=37  Identities=41%  Similarity=0.582  Sum_probs=34.1

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +.+..+|++|||+|.+|.+.|+.|++.|.+|.|+||.
T Consensus        41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4456789999999999999999999999999999986

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.95  E-value=1.4e-05  Score=64.34  Aligned_cols=36  Identities=39%  Similarity=0.633  Sum_probs=32.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+||+|||+|.+|+.+|..+ +.|.+|+|+||...
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            3568999999999999999999 88999999999864

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.94  E-value=3.5e-05  Score=62.23  Aligned_cols=40  Identities=28%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|+|||+|++|+.+|+.|++.|++|+++|+.+.+||.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~  175 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM  175 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence            3457999999999999999999999999999998877653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.94  E-value=1.5e-05  Score=62.57  Aligned_cols=34  Identities=41%  Similarity=0.691  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+|++|||+|++|+.+|..++++|++|+++|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999864

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.92  E-value=2.8e-05  Score=59.78  Aligned_cols=46  Identities=33%  Similarity=0.580  Sum_probs=39.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC--cccCceeecc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN--YFTPKDYSLL   74 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~--~~g~~~~~~~   74 (119)
                      ...+|++|||+|.+|+.+|..++.+|.+|+++|++.  .+|+..+.++
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSf   50 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSF   50 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeec
Confidence            457899999999999999999999999999998864  4677665543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.92  E-value=3.5e-05  Score=61.35  Aligned_cols=38  Identities=37%  Similarity=0.428  Sum_probs=34.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ..+++|||+|++|+.+|..|++.|++|+++|+.+.+|+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG  180 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG  180 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            46899999999999999999999999999999876654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02976 amine oxidase

Probab=97.90  E-value=3.2e-05  Score=68.27  Aligned_cols=43  Identities=28%  Similarity=0.397  Sum_probs=39.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ..+++|||+|++|+.+|+.|.+.|++|+|+|+.+.+||..+..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence            4789999999999999999999999999999999999876553

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.89  E-value=1.5e-05  Score=62.70  Aligned_cols=41  Identities=37%  Similarity=0.400  Sum_probs=35.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHH------cCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS------AGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~------~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+||+|+++|.+|.+      +.++|.|+|+...+|+..
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght  121 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT  121 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence            56899999999999999998843      256899999999888753

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.88  E-value=2e-05  Score=60.17  Aligned_cols=35  Identities=29%  Similarity=0.638  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +.+||+|||||.+|+.|+.++.++|.++.++.++.
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            36899999999999999999999999999998765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.87  E-value=2.2e-05  Score=61.78  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=33.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +++|||+|++|+.+|.++++.|.+|+++|++. +||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c   38 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTC   38 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccC
Confidence            69999999999999999999999999999875 56553

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.87  E-value=1.8e-05  Score=61.55  Aligned_cols=35  Identities=37%  Similarity=0.554  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEE-ecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVI-EKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~-e~~~~~g   67 (119)
                      ||+|||||++|+.+|+.+++.|.+|+++ .+.+.++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~   36 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG   36 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence            7999999999999999999999999999 4444443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.86  E-value=4.2e-05  Score=46.28  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=32.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .++|||+|..|+..|..+++.|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            47999999999999999999999999999988765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.86  E-value=3.5e-05  Score=61.15  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=35.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      -+|+|||+||+|+.+|..|++.|+.|+++|+.+..||
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            7899999999999999999999999999999998875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.86  E-value=2.4e-05  Score=66.75  Aligned_cols=38  Identities=18%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ...+|+|||+||+|+++|+.|++.|++|+++|+.+..|
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g  419 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL  419 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence            45689999999999999999999999999999875433

>TIGR01810 betA choline dehydrogenase

Probab=97.85  E-value=1.8e-05  Score=63.46  Aligned_cols=33  Identities=36%  Similarity=0.610  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~   65 (119)
                      |++|||+|.+|+.+|.+|++.+ ++|+|+|++..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999988 69999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.84  E-value=2.5e-05  Score=66.35  Aligned_cols=39  Identities=33%  Similarity=0.710  Sum_probs=35.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .....+||+|||+|.+|+.+|..+++.|.+|+|+||...
T Consensus         9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800          9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            345679999999999999999999999999999999875

>PLN02785 Protein HOTHEAD

Probab=97.82  E-value=3.2e-05  Score=62.99  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...||++|||+|.+|+.+|.+|++ +.+|+|+|++..
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            356999999999999999999999 699999999863

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.81  E-value=2.1e-05  Score=59.12  Aligned_cols=80  Identities=13%  Similarity=0.153  Sum_probs=55.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC------CcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhHHHH
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG------QKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTA  103 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g------~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~a  103 (119)
                      ...+++|+|||+.|..+||.|++.+      ..++++|+....++....          +.+++.....-.+.-.+..++
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGk----------asgfLa~wc~~s~~~~La~ls   78 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGK----------ASGFLAKWCQPSIIQPLATLS   78 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccc----------cchhhHhhhCCcccchhhHHH
Confidence            4468999999999999999999987      789999998877654211          111111111112234567778


Q ss_pred             HHHHHHHHHHHhhhcC
Q 033419          104 YCLSKRIAESLREQSS  119 (119)
Q Consensus       104 ~~~~~~l~~~l~~~~~  119 (119)
                      ..+.++|.+++...+|
T Consensus        79 fkLh~~LsdeydGvnn   94 (380)
T KOG2852|consen   79 FKLHEELSDEYDGVNN   94 (380)
T ss_pred             HHHHHHHHHhhcCccc
Confidence            8888888888766554

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.80  E-value=3.9e-05  Score=59.68  Aligned_cols=41  Identities=37%  Similarity=0.427  Sum_probs=38.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+|++|||+||.|..+|.+.++.|++..++|++...||..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTc   78 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTC   78 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCcee
Confidence            57999999999999999999999999999999998888864

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.79  E-value=6.9e-05  Score=58.80  Aligned_cols=44  Identities=30%  Similarity=0.234  Sum_probs=37.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcE--EEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKV--VVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v--~v~e~~~~~g~~~~~   72 (119)
                      ....+++|+|||++|+++||+|++++.++  +++|+.+..||..++
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            34568999999999999999999988765  569999999997766

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.78  E-value=5e-05  Score=57.79  Aligned_cols=40  Identities=33%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+++|||+|++|+.+|..|++.|++++++|+.+.+++.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~   56 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGL   56 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCce
Confidence            3458999999999999999999999999999998877653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.78  E-value=3.8e-05  Score=62.93  Aligned_cols=34  Identities=44%  Similarity=0.611  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHH----HcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLA----SAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~----~~g~~v~v~e~~~~~   66 (119)
                      ||+|||+|.+|+.+|..++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            7999999999999999998    679999999998763

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.77  E-value=4.1e-05  Score=58.90  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ...+|+|||+|++|+++|+.|++ ..+|+++|.+...||...+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCcccee
Confidence            35689999999999999999987 57999999999999886665

>PRK13984 putative oxidoreductase; Provisional

Probab=97.77  E-value=9.7e-05  Score=60.11  Aligned_cols=40  Identities=38%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+++|||+|++|+.+|..|++.|++|+++|+.+..||.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~  321 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV  321 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence            4568999999999999999999999999999998877653

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.77  E-value=7e-05  Score=64.78  Aligned_cols=65  Identities=25%  Similarity=0.346  Sum_probs=53.8

Q ss_pred             CCCchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419            1 MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ||+....|++..=++|+=+...+.   ...-.+|.|||+||+|+.+|-+|.+.|+.|+++|+.+..||
T Consensus      1758 iksie~aiid~af~egwm~p~pp~---~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1758 IKSIECAIIDKAFEEGWMKPCPPA---FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             ccchhhHHHHHHHHhcCCccCCcc---cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            566777888888888875554433   34567899999999999999999999999999999998885

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.76  E-value=5.2e-05  Score=59.91  Aligned_cols=37  Identities=41%  Similarity=0.554  Sum_probs=33.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      |++|||+|++|+.+|..+++.|.+|+++|+.. +||.+
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c   39 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAA   39 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcc
Confidence            79999999999999999999999999999875 56654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.76  E-value=6.5e-05  Score=60.11  Aligned_cols=40  Identities=23%  Similarity=0.069  Sum_probs=34.9

Q ss_pred             ccccEEEECCChHHHHHHHHHH-HcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~~~g~~   69 (119)
                      ....|+|||+||+|+.+|..|. +.|++|.|+|+.+.+||.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL   78 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL   78 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence            4568999999999999999764 679999999999988875

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.73  E-value=3.9e-05  Score=64.18  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~   65 (119)
                      +|+|||+|++|+.+|..|++.  |++|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999999875

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.71  E-value=5.2e-05  Score=60.76  Aligned_cols=36  Identities=36%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+..+||+|||+|.+|+.+|..++  +.+|+|+||...
T Consensus         6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            356799999999999999999886  579999999876

>TIGR03452 mycothione_red mycothione reductase

Probab=97.70  E-value=6.3e-05  Score=59.26  Aligned_cols=38  Identities=26%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +||++|||+|++|..+|..  +.|.+|+++|++ .+||.+.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~   39 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCL   39 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeee
Confidence            5899999999999888654  469999999985 4676544

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=97.69  E-value=6e-05  Score=59.42  Aligned_cols=38  Identities=26%  Similarity=0.567  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +||++|||+|++|..+|.+  +.|.+|+++|++ .+||.+.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~   38 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL   38 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence            3899999999999988865  469999999985 4666543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.62  E-value=9.1e-05  Score=58.19  Aligned_cols=33  Identities=42%  Similarity=0.661  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|++|||+|++|+.+|+.++++|++|+++|++.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            689999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.61  E-value=7.4e-05  Score=61.05  Aligned_cols=34  Identities=38%  Similarity=0.522  Sum_probs=31.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      |+|||+|.+|+.+|..+++.|.+|+|+||....+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6899999999999999999999999999987443

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.61  E-value=0.0001  Score=60.36  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ||++|||+|++|+.+|..+++.|.+|+++|+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            699999999999999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.58  E-value=0.00012  Score=57.74  Aligned_cols=45  Identities=31%  Similarity=0.538  Sum_probs=34.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      |..+|||+|+|.|..-...|..|++.|.+|+.+|+++.+|+...+
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            457899999999999999999999999999999999999987543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.53  E-value=0.00014  Score=57.52  Aligned_cols=44  Identities=36%  Similarity=0.480  Sum_probs=39.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...||++|||+|.-|+.+|..|++.|.+|.++|++..+||...+
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavt   55 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVT   55 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceee
Confidence            56899999999999999999999999999999999777765443

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.49  E-value=0.00014  Score=57.64  Aligned_cols=32  Identities=56%  Similarity=0.742  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcC---CcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~   64 (119)
                      ||+|||||++|..+|..|++.+   ++|+|+|+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            6999999999999999999988   8999999885

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.47  E-value=0.00036  Score=53.34  Aligned_cols=42  Identities=33%  Similarity=0.419  Sum_probs=35.9

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTP   68 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~   68 (119)
                      ....++|.+|||+|++|++.|..|.-+  +++|.++|++..++-
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~   87 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV   87 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence            345789999999999999999987654  899999999987663

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.40  E-value=0.00015  Score=58.48  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..|||+|||||++|+.+|+..++.|.+++++-..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            4599999999999999999999999999998655

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.36  E-value=4.9e-05  Score=55.21  Aligned_cols=41  Identities=39%  Similarity=0.452  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~~~   71 (119)
                      ..|++|+|+|.+|+++||..+++  .++|.++|+.-.+||..|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            46999999999999999999854  678999999877776544

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.35  E-value=0.00035  Score=54.00  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~   66 (119)
                      ..+++|||+|++|+.+|..|++.+.  +++++++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            3579999999999999999999877  79999887543

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.35  E-value=9.3e-05  Score=59.66  Aligned_cols=41  Identities=29%  Similarity=0.497  Sum_probs=36.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|||+|||||.+|..||+-.+-+|+++.++|+++..-|.
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            35699999999999999999999999999999999865443

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.34  E-value=0.00027  Score=57.72  Aligned_cols=39  Identities=31%  Similarity=0.436  Sum_probs=34.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~   66 (119)
                      ...+||++|||||-+|+..|.+|++. .++|+|+|++...
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            45789999999999999999999985 6799999998644

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.30  E-value=0.00053  Score=51.62  Aligned_cols=36  Identities=28%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCC
Q 033419           41 CGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEA   76 (119)
Q Consensus        41 ~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~   76 (119)
                      ++||++|+.|+++|++|+|+|+.+.+||..++....
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~   36 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD   36 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC
Confidence            489999999999999999999999999987765544

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.27  E-value=0.00042  Score=54.09  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~   66 (119)
                      +++|||+|++|+++|..|++.+  .+|+|+|+.+.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            5999999999999999998864  589999998764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.25  E-value=0.0003  Score=54.95  Aligned_cols=30  Identities=30%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             EECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           36 IVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        36 iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      |||+|.+|+.+|..+++.|.+|+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            799999999999999999999999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00039  Score=53.78  Aligned_cols=40  Identities=30%  Similarity=0.402  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...|||+|||+||+|.++|.+.+++|++.-++  ...+||..
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv  248 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV  248 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence            45799999999999999999999999997776  23567753

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.23  E-value=0.00051  Score=53.88  Aligned_cols=35  Identities=20%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      +|+|||+|++|+.+|..|++.  +.+|+|+|+.+.+.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            699999999999999999876  67899999986543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.18  E-value=0.00057  Score=53.40  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ....+++|||||.+|+.+|..|.+.+.+++|+|+.+.+
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            34578999999999999999998778899999987643

>PRK09897 hypothetical protein; Provisional

Probab=97.17  E-value=0.00066  Score=54.90  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      .+|+|||+|++|+++|.+|.+.  .++|+|+|+...+|
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            3799999999999999999875  45899999987777

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.00053  Score=54.89  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=33.1

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +.+..|||+|||||.+|..+|...++.|.+.+++-+.
T Consensus        24 s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   24 SSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            3467899999999999999999999999999998765

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.16  E-value=0.0018  Score=50.11  Aligned_cols=39  Identities=41%  Similarity=0.710  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHH----cCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~~~~g~   68 (119)
                      .++||+|||||..|++.|+-|.+    .|++|+|+|+.+.+.-
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            57899999999999999998754    3799999999876543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00072  Score=51.93  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +..|.|||+|.+|..+||+++++|.+|.+.|-++.-+..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tp   41 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTP   41 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCC
Confidence            345899999999999999999999999999988765433

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.12  E-value=0.0008  Score=51.08  Aligned_cols=39  Identities=38%  Similarity=0.451  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+++|+|+|+.|+.+|..++++|++|+++|..+.+++.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~  174 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ  174 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence            368999999999999999999999999999999887765

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.04  E-value=0.00073  Score=53.94  Aligned_cols=34  Identities=44%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ||+|||+|.+|+++|+.|.+. ++|+|+-|.+...
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~   42 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE   42 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence            899999999999999999987 9999999887643

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0061  Score=50.62  Aligned_cols=45  Identities=29%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcE-EEEecCCcccCc
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKV-VVIEKGNYFTPK   69 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v-~v~e~~~~~g~~   69 (119)
                      +.......|++|||+|..|..++++|++.|.++ +++|+...-.+.
T Consensus        33 s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgt   78 (856)
T KOG2844|consen   33 STPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGT   78 (856)
T ss_pred             cccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccc
Confidence            334445689999999999999999999999984 455555443333

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.91  E-value=0.0018  Score=49.80  Aligned_cols=40  Identities=25%  Similarity=0.404  Sum_probs=35.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      .++|||+|.+|++++..+-..|-.|+++|+...+||+...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK   50 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK   50 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence            5999999999999999999888889999999999987443

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0012  Score=50.99  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=31.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ...||.+|||+|.+|++||...+..|.+|.++|-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            4579999999999999999999999999999985

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0026  Score=46.67  Aligned_cols=36  Identities=33%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +...-+++|||+||++..+|.+++++.++.+++|.-
T Consensus         5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~   40 (322)
T KOG0404|consen    5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM   40 (322)
T ss_pred             ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence            344568999999999999999999999999999954

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.87  E-value=0.0012  Score=51.39  Aligned_cols=39  Identities=31%  Similarity=0.181  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~   68 (119)
                      ..+.|+|||+||+|+.+|.+|-+  .+++|.++|+.+.+.|
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            34589999999999999998766  4689999999987665

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.74  E-value=0.0022  Score=43.58  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=26.8

Q ss_pred             EEECCChHHHHHHHHHHHc-----CCcEEEEecCCc
Q 033419           35 VIVGSGCGGGVAAAVLASA-----GQKVVVIEKGNY   65 (119)
Q Consensus        35 ~iiG~G~~G~~~a~~l~~~-----g~~v~v~e~~~~   65 (119)
                      +|||+|++|++++.+|.+.     ..+++|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999776     568999999655

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.72  E-value=0.0039  Score=48.32  Aligned_cols=43  Identities=28%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...||.+|||+|..|+.+|.+.+..|.++.++|..-..||.+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV   60 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV   60 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence            3589999999999999999999999999999998766776543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.71  E-value=0.0022  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHc---CCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~   65 (119)
                      +++|||||++|+.+|.++.++   +.+++|+|+.+.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            489999999999999998643   679999998764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.0024  Score=50.31  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=39.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ....+|++|||.|..=...|...++.|.+|+-+|+++.+|+.+.+
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS   49 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS   49 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence            346899999999998888888889999999999999999987653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.66  E-value=0.0019  Score=49.39  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=26.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~   66 (119)
                      .+|+++||.||++++.|..|...+ .+++++|+.+.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999998765 899999987753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.63  E-value=0.004  Score=47.75  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~   65 (119)
                      .+++|||+|++|+.+|..+++.  ..+++++++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4899999999999999999875  457999987663

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.59  E-value=0.0034  Score=49.35  Aligned_cols=37  Identities=43%  Similarity=0.572  Sum_probs=30.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHc----CCcEEEEecCC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGN   64 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~   64 (119)
                      .+..+||+|+|||++|...|..|...    .++++++|...
T Consensus        33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            34589999999999999988888753    56899999873

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.55  E-value=0.022  Score=45.55  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=34.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~   68 (119)
                      .++||++||||+.+.+.++.|.+  ..+++.++||-+.++.
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~   42 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL   42 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence            47899999999999999999987  4779999999887663

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.51  E-value=0.0045  Score=47.52  Aligned_cols=41  Identities=27%  Similarity=0.363  Sum_probs=33.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-CC-cEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-GQ-KVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~-~v~v~e~~~~~g~~   69 (119)
                      ..++.++|+|||.+|+..|..+.++ +. +|.++|.....-..
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQ   79 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQ   79 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccC
Confidence            4789999999999999999998765 54 79999987665444

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.38  E-value=0.0062  Score=47.07  Aligned_cols=35  Identities=40%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  179 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV  179 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            46999999999999999999999999999987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.31  E-value=0.006  Score=42.58  Aligned_cols=32  Identities=31%  Similarity=0.529  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..++..|++|.++|..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            37899999999999999999999999999875

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.24  E-value=0.0065  Score=41.32  Aligned_cols=32  Identities=28%  Similarity=0.535  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|+|+|..|.++|..|+++|.+|.+..+..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            47899999999999999999999999998774

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.23  E-value=0.0082  Score=47.48  Aligned_cols=35  Identities=37%  Similarity=0.450  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|++|+.+|..+++.|.+|+++|+.+.+
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            47999999999999999999999999999987643

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.21  E-value=0.008  Score=43.44  Aligned_cols=33  Identities=30%  Similarity=0.580  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +++|+|+|..|...|..|.+.|..|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            589999999999999999999999999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.19  E-value=0.01  Score=46.40  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|.+|+.+|..+++.|.+|+++|+.+.+
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            46999999999999999999999999999987644

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.18  E-value=0.0075  Score=47.41  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .++|+|.|++|+++|..|.++|++|+++|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            4899999999999999999999999999987543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.18  E-value=0.0086  Score=47.44  Aligned_cols=33  Identities=36%  Similarity=0.593  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|+|+|.+|+.+|..|.++|++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            369999999999999999999999999999664

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.15  E-value=0.0099  Score=45.58  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~  176 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL  176 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence            46999999999999999999999999999987643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.12  E-value=0.011  Score=46.33  Aligned_cols=35  Identities=40%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+++|||+|.+|+.+|..+++.|.+|+++|+.+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            57999999999999999999999999999987643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.11  E-value=0.013  Score=39.05  Aligned_cols=31  Identities=35%  Similarity=0.642  Sum_probs=29.1

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|+|+|..|...|++|++.|.+|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.06  E-value=0.012  Score=46.27  Aligned_cols=36  Identities=33%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~   66 (119)
                      ..+++|+|||.+|+.++..|.++.  .+++++|+.+.+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            357999999999999999999874  899999998754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.98  E-value=0.013  Score=46.05  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            46999999999999999999999999999987643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.97  E-value=0.014  Score=46.03  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|++|+.+|..+.+.|.+|+++++.+.+
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l  205 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL  205 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            47999999999999999999999999999987643

>TIGR02053 MerA mercuric reductase

Probab=95.96  E-value=0.015  Score=45.77  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            57999999999999999999999999999987543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.94  E-value=0.014  Score=46.29  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i  209 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV  209 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            47999999999999999999999999999987643

>PRK06370 mercuric reductase; Validated

Probab=95.87  E-value=0.017  Score=45.53  Aligned_cols=35  Identities=34%  Similarity=0.477  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            47999999999999999999999999999987654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.86  E-value=0.016  Score=46.14  Aligned_cols=37  Identities=41%  Similarity=0.545  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +-.++|||+|..|+..|..+++.|.+|+|+|+.+.+-
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL  209 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL  209 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            3469999999999999999999999999999987654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.84  E-value=0.017  Score=45.64  Aligned_cols=34  Identities=29%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            4799999999999999999999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.82  E-value=0.017  Score=44.94  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|++|+.+|..+++.|.+|+++++.+.+
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            47999999999999999999999999999987654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.78  E-value=0.018  Score=45.58  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            46999999999999999999999999999987643

>PRK07846 mycothione reductase; Reviewed

Probab=95.75  E-value=0.019  Score=45.36  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            57999999999999999999999999999987644

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.75  E-value=0.017  Score=45.30  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            4699999999999999999999999999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.73  E-value=0.016  Score=48.95  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHHHc---CCcEEEEecCCccc
Q 033419           34 VVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNYFT   67 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~~g   67 (119)
                      ++|||+|++|+.+|..+.+.   +++|+|+|+.+.++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            58999999999999988764   56899999987654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.73  E-value=0.019  Score=45.07  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            46999999999999999999999999999987643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.016  Score=43.47  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|.|||+|..|...|..++++|++|+++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            58999999999999999999999999999875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.70  E-value=0.022  Score=44.99  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++|+.+.
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4799999999999999999999999999998654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.68  E-value=0.023  Score=44.64  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            47999999999999999999999999999987654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.67  E-value=0.013  Score=41.11  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|+|.|..|+..|..++++|++|+.+|..+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            48999999999999999999999999999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.67  E-value=0.021  Score=45.54  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CC-cEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQ-KVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~-~v~v~e~~~~~g~   68 (119)
                      ++|+|||+|++|+..|.+|.+.  .- .+.|+|+...+|.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~   41 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ   41 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence            6899999999999999998764  22 3999999988874

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.63  E-value=0.023  Score=44.49  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3569999999999999999999999999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=95.55  E-value=0.026  Score=44.60  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            47999999999999999999999999999987643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.54  E-value=0.024  Score=42.33  Aligned_cols=33  Identities=39%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .|.|||+|.-|...|..+++.|++|+++|..+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            699999999999999999999999999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.54  E-value=0.029  Score=42.15  Aligned_cols=33  Identities=33%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|+|+|..|...|..|++.|.+|+++.+..
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            469999999999999999999999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.54  E-value=0.023  Score=48.47  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHc----CCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g   67 (119)
                      +++|||+|++|+.+|..|.+.    +++++|+++.+.+.
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            799999999999999998754    57899999887654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.40  E-value=0.03  Score=44.45  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -.++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            47999999999999999999999999999987643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.028  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..++++|++|+++|+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.29  E-value=0.037  Score=41.59  Aligned_cols=33  Identities=33%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|+|+|..|...|+.|++.|.+|+++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            369999999999999999999999999999853

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.29  E-value=0.031  Score=41.52  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..++++|++|+++|..+
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999998764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.27  E-value=0.034  Score=41.30  Aligned_cols=33  Identities=30%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+.|||+|..|...|..++++|++|+++|+.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            459999999999999999999999999999764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.27  E-value=0.035  Score=43.34  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+++|||+|++|+.+|..+.+.|.+|+++++.+.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            4799999999999999999999999999998764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.26  E-value=0.028  Score=38.85  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+|+|||+|.++.-++..|.+.|.+|+++-|.+.
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            46799999999999999999999999999977653

...

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=95.22  E-value=0.041  Score=43.58  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..|++.|.+|+++++.+.+
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~  212 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence            46999999999999999999999999999986643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.21  E-value=0.03  Score=47.28  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            36999999999999999999999999999987643

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.032  Score=42.52  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..++..|++|+++|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.18  E-value=0.036  Score=40.96  Aligned_cols=31  Identities=35%  Similarity=0.676  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ++.|+|+|..|...|..|++.|.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4899999999999999999999999999974

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.16  E-value=0.04  Score=43.36  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            36999999999999999999999999999987643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=95.15  E-value=0.04  Score=43.28  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4799999999999999999999999999998764

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.011  Score=46.39  Aligned_cols=41  Identities=24%  Similarity=0.563  Sum_probs=36.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...|||+|+|-|..=+..+..|+..|.+|+.+|+++..|+.
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE   42 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence            45699999999998888888899999999999999999875

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.11  E-value=0.039  Score=40.88  Aligned_cols=30  Identities=30%  Similarity=0.577  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +++|+|+|..|...|..|++.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            489999999999999999999999999987

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.10  E-value=0.043  Score=42.98  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            47999999999999999999999999999987643

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.04  E-value=0.039  Score=44.29  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.+.+|+++++.+.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            47999999999999999999999999999976544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.046  Score=42.64  Aligned_cols=39  Identities=31%  Similarity=0.600  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .|||+|.|.|+.=...+..|+..|.+|+.+|+++..|..
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST   44 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence            699999999999888888999999999999999988854

>PLN02507 glutathione reductase

Probab=94.99  E-value=0.046  Score=43.82  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  237 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL  237 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            4799999999999999999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=94.98  E-value=0.043  Score=44.78  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i  272 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL  272 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence            346999999999999999999999999999987643

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.97  E-value=0.041  Score=47.00  Aligned_cols=33  Identities=33%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++|||+|..|+.+|..|++.|.+|+++|..+.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~  179 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM  179 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            689999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.93  E-value=0.057  Score=37.06  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+..++|+|+|.+|..++.-+...|.+++++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            45689999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.92  E-value=0.051  Score=38.76  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|||||.+|..-+..|.+.|.+|+|+++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            479999999999999999999999999997653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.92  E-value=0.056  Score=34.30  Aligned_cols=31  Identities=42%  Similarity=0.545  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|+|.|..|..++..|.+.+.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999777999999886

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.91  E-value=0.053  Score=35.75  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~   65 (119)
                      ...++|+|+|..|..+|..|++.|. +++++|....
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            3569999999999999999999999 6999997643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.043  Score=40.79  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+.|||+|..|...|..++++|++|+++|+.+.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            589999999999999999999999999997653

>PRK13748 putative mercuric reductase; Provisional

Probab=94.90  E-value=0.049  Score=43.93  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++..
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            479999999999999999999999999999753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.86  E-value=0.055  Score=36.99  Aligned_cols=33  Identities=30%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .-.++|||||..|..-+..|.+.|.+|+|+.+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            457999999999999999999999999999643

>PRK14694 putative mercuric reductase; Provisional

Probab=94.84  E-value=0.057  Score=42.73  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            479999999999999999999999999998753

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.83  E-value=0.052  Score=45.18  Aligned_cols=36  Identities=25%  Similarity=0.212  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            479999999999999999999999999999876543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.81  E-value=0.051  Score=42.91  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+-+|..+.+.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999998763

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.80  E-value=0.062  Score=38.17  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ....|+|+|+|-.|..+|..|++.|. +++++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45689999999999999999999999 69999976

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.80  E-value=0.048  Score=40.30  Aligned_cols=32  Identities=31%  Similarity=0.498  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..++++|++|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            59999999999999999999999999999654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.79  E-value=0.048  Score=44.25  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..|++.|.+|+++++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            4799999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.74  E-value=0.092  Score=42.26  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCce
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~   70 (119)
                      .+.-|||+|+++|++|..|-+-    |-++.++|+.+..||..
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            3577999999999999999663    56899999999888764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.67  E-value=0.059  Score=40.68  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|+++|++|+++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            59999999999999999999999999999754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.67  E-value=0.093  Score=34.77  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      ....++|+|+|-+|-.+++.|...|.+ ++++.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            356799999999999999999999997 99998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK10262 thioredoxin reductase; Provisional

Probab=94.65  E-value=0.064  Score=40.13  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..|++.+.+|+++++.+.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999987643

>PRK14727 putative mercuric reductase; Provisional

Probab=94.60  E-value=0.068  Score=42.48  Aligned_cols=33  Identities=18%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            469999999999999999999999999998753

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.58  E-value=0.07  Score=39.90  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|..|...|..+++.|++|+++|+..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999999999999754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=94.53  E-value=0.071  Score=38.85  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+++|||+|..|+.+|..+++.+.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999989999999987643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.52  E-value=0.074  Score=37.82  Aligned_cols=33  Identities=39%  Similarity=0.465  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .-.++|||+|-.|...+..|.+.|.+++|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            457999999999999999999999999999764

>PRK12831 putative oxidoreductase; Provisional

Probab=94.52  E-value=0.063  Score=42.65  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|||+|.+|+-+|..+.+.|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.47  E-value=0.078  Score=41.09  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ...+++|+|+|.+|..++..+...|.+|.++|+.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            3467999999999999999999999999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.46  E-value=0.068  Score=42.17  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|+|.|+.|+.+|..+...|.+|+++|..+
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            369999999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.45  E-value=0.069  Score=42.90  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|+..+.+|+++++.+..
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            47999999999999999999999999999887643

>PTZ00052 thioredoxin reductase; Provisional

Probab=94.45  E-value=0.067  Score=42.85  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -+++|||+|..|+..|..|++.|.+|+++++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            37999999999999999999999999999874

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.44  E-value=0.058  Score=36.13  Aligned_cols=32  Identities=28%  Similarity=0.345  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++|+|+|+.+...+..+...|++|+++|..+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            57999999999999999999999999998754

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.41  E-value=0.058  Score=42.49  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=34.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF   66 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~   66 (119)
                      +++..+|++.||-||+-++.|..|...+ .+++.+||.+.+
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            3567899999999999999999998764 789999998754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=94.40  E-value=0.072  Score=42.54  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            46999999999999999999999999999874

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=94.37  E-value=0.076  Score=43.33  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            47999999999999999999999999999987643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.36  E-value=0.042  Score=34.75  Aligned_cols=34  Identities=35%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|||+|..|..-+..|.+.|.+++++.+..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4579999999999999999999999999998773

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=94.36  E-value=0.079  Score=40.31  Aligned_cols=33  Identities=27%  Similarity=0.251  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      -.++|||+|..|+.+|..+.+.|.+ |+++++..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            3699999999999999999888997 99998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.20  E-value=0.11  Score=38.77  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            45689999999999999999999996 799999764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.16  E-value=0.18  Score=40.80  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+|+|+|+|++|+.+..-+...|.+|.++|..+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35679999999999999998888899999998764

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.12  E-value=0.1  Score=38.29  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ....++|+|+|+.+...+..+...|++|+++|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            457899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=94.07  E-value=0.097  Score=41.92  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+..   .|.+|+++|+.+.+
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            469999999999999976543   48999999987643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.00  E-value=0.1  Score=38.76  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..+++.|++|+++|+.+
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            49999999999999999999999999999764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.93  E-value=0.22  Score=36.04  Aligned_cols=32  Identities=38%  Similarity=0.622  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc---EEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK---VVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~---v~v~e~~   63 (119)
                      .+++|+|+|-+|..+|..|.+.|.+   +.++|+.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4699999999999999999999985   9999987

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.89  E-value=0.14  Score=33.93  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++|+|.|-.|..++..|.+.|. +++++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            48999999999999999999999 699998763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.85  E-value=0.057  Score=42.50  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=29.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc-------------CCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA-------------GQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~-------------g~~v~v~e~~~~~g   67 (119)
                      ...+++|+|||++|...|..|+..             .++|.++|+.+.+-
T Consensus       154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL  204 (405)
T COG1252         154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL  204 (405)
T ss_pred             ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence            345799999999999988877542             13899999998554

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.82  E-value=0.093  Score=40.99  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..|+++|++|+++|+.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            48999999999999999999999999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.82  E-value=0.12  Score=39.00  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .+.|||+|..|..+|+.++.+|+ +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            68999999999999999999887 899999743

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.81  E-value=0.32  Score=33.70  Aligned_cols=35  Identities=29%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             ccccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+++|+|+|- +|..+|..|.++|.+++++.+..
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            345799999997 69999999999999999998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.80  E-value=0.15  Score=35.36  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|-.|..++..|++.|. +++++|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 599999764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=93.79  E-value=0.073  Score=40.66  Aligned_cols=29  Identities=31%  Similarity=0.340  Sum_probs=25.3

Q ss_pred             HHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           45 VAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        45 ~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ++|+.|+++|++|+|+|+.+.+||...+.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~   29 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSF   29 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEe
Confidence            37899999999999999999999985543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.78  E-value=0.14  Score=39.33  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=32.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            356789999999999999999999999 899999753

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.77  E-value=0.11  Score=38.77  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|++.|+.|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999998864

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.76  E-value=0.25  Score=37.48  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             ccEEEECCC-hHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|||.| ..|...|..|.++|+.|+++.+..
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            379999996 899999999999999999997653

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.76  E-value=0.12  Score=40.49  Aligned_cols=33  Identities=42%  Similarity=0.469  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHH--------------cCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLAS--------------AGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~--------------~g~~v~v~e~~~~   65 (119)
                      .++|||+|++|+..|..|+.              .+.+|+++++.+.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            79999999999999988864              3788999998753

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.75  E-value=0.28  Score=36.78  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +++|+|.|. +|..+|..|.+.|..|+++.+.
T Consensus       161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        161 HAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            699999997 9999999999999999999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.72  E-value=0.13  Score=39.40  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            45679999999999999999999999 799999764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.72  E-value=0.13  Score=38.84  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|..+|+.|+.+|.  .+.++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            58999999999999999999995  799999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.68  E-value=0.1  Score=41.00  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+.|||.|..|+..|..|+++|++|+.+|..+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            359999999999999999999999999999764

>PRK04148 hypothetical protein; Provisional

Probab=93.67  E-value=0.077  Score=35.60  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..+++||.| .|...|..|++.|++|+.+|..+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            359999999 899889999999999999997764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.63  E-value=0.17  Score=36.28  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|+|+|-.|..+|..|++.|. +++++|...
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            356789999999999999999999999 599998763

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.59  E-value=0.15  Score=38.41  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||+|.-|...|..|.+.|++|+++++..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            59999999999999999999999999999854

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.58  E-value=0.16  Score=38.15  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.+.|++|.+.++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            359999999999999999999999999998764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.13  Score=40.21  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|..|+++|..|++.|.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            58999999999999999999999999999654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.57  E-value=0.17  Score=35.90  Aligned_cols=36  Identities=33%  Similarity=0.570  Sum_probs=31.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            356789999999999999999999998 799999763

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.56  E-value=0.14  Score=38.62  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|+|+|..|...|..|++.|.+|.++++..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999998853

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.56  E-value=0.16  Score=37.03  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -...+|+|+|+|-.|..+|..|++.|. +++++|...
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            356789999999999999999999998 688888764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.53  E-value=0.13  Score=35.66  Aligned_cols=33  Identities=33%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|-|..|..+|..|+..|.+|+|.|..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            469999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.52  E-value=0.34  Score=36.49  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|||.|. .|..+|..|.++|..|+++.+..
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            3799999988 99999999999999999998753

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=93.49  E-value=0.076  Score=39.88  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=25.9

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~   64 (119)
                      .++|||||++|.+||.+|+..  ..+++++-..+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            378999999999999999864  55788876554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=93.47  E-value=0.11  Score=41.50  Aligned_cols=40  Identities=35%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHc-----CCcEEEEecCCcc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASA-----GQKVVVIEKGNYF   66 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~-----g~~v~v~e~~~~~   66 (119)
                      .+...+|+++||+|++|+.+|+.++..     .+.++++|.+...
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            456789999999999999999998753     6789999987543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.46  E-value=0.14  Score=41.64  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +.+++|+|.|..|...|..|.+.|.+++++|+++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46799999999999999999999999999998754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.46  E-value=0.14  Score=40.12  Aligned_cols=32  Identities=28%  Similarity=0.588  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      +++|+|+|..|..+|..|++.+ .+|++.+|..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            6999999999999999999998 7999999873

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.39  E-value=0.19  Score=38.23  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~   65 (119)
                      ...+.|||+|..|..+|+.++..|+ .+.++|..+.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            3579999999999999999999997 8999997553

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.36  E-value=0.17  Score=36.96  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -...+|+|+|.|..|..++..|++.|. +++++|...
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            356789999999999999999999998 788888653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.32  E-value=0.15  Score=40.94  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..+.++|++|+++|+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.27  E-value=0.16  Score=34.61  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++-+||-|..|...|.+|.++|++|.++|+.+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            58899999999999999999999999999774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.26  E-value=0.16  Score=40.06  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .-+++|||+|..|+.+|..+.+.|. +|+++++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3479999999999999999999988 899998753

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.26  E-value=0.54  Score=34.83  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             CchHHHHHHHhHcCcccccCC-------ccc-cccccccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419            3 ETDSTIVQSLTQKGLQVTKDS-------KQN-VYKIKCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+.+.+++++...+++.....       ... ++.....++|.|+ |-.|..+|..|++.|++|+++.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866          4 RPLRRLTDQLTLAGMRPPISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             chHHHHHHHHHHhccCCCCCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345677777776666554221       111 1112345788887 5579999999999999999998753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.23  E-value=0.19  Score=36.18  Aligned_cols=35  Identities=34%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            45689999999999999999999999 688888654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.22  E-value=0.15  Score=40.09  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|.|..|..+|..+...|.+|+++|..+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            3479999999999999999999999999998664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.18  E-value=0.13  Score=38.01  Aligned_cols=32  Identities=31%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|.|||.|..|.+.|..|.++|++|+++++.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48899999999999999999999999999764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.17  E-value=0.18  Score=35.73  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|.|..|..+|..|.+.|.+|++.|...
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            359999999999999999999999999998754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.14  E-value=0.22  Score=37.82  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ...++.|||+|.+|..+|+.|...++  .+.++|...
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            34689999999999999999999888  699999754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.07  E-value=0.14  Score=43.07  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|..+|..++..|++|+++|..+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            359999999999999999999999999999875

>PRK08328 hypothetical protein; Provisional

Probab=93.05  E-value=0.22  Score=36.11  Aligned_cols=35  Identities=34%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|+|-.|..++..|++.|. +++++|...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46789999999999999999999999 688988653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=92.96  E-value=0.18  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      -+|+|||+|.+|+-+|..+.+.|.+ |+++++..
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999997 99998764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.94  E-value=0.16  Score=41.01  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .|.|||+|.-|..+|..+++.|++|+++|+.+.
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999998753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.93  E-value=0.26  Score=33.00  Aligned_cols=32  Identities=34%  Similarity=0.583  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      +|.|||+ |..|...|+.|...++  .+.++|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5899999 9999999999998877  589999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.92  E-value=0.37  Score=39.10  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+++|+|+|.+|+.++..+...|.+|.++|...
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.85  E-value=0.22  Score=37.25  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ++.|||+|..|...|+.++..|+ .+.++|...
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            69999999999999999998876 899999754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.82  E-value=0.24  Score=38.93  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..++|+|.|..|+++|..|+++|++|++.|....
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3699999999999999999999999999997543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.80  E-value=0.25  Score=34.92  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|.|..|..++..|++.|. +++++|...
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            56789999999999999999999999 588998664

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.79  E-value=0.44  Score=33.16  Aligned_cols=32  Identities=34%  Similarity=0.543  Sum_probs=28.2

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++|+|+ |..|..++..+.+.|.++.++.+.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46999997 999999999999999999998765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.78  E-value=0.18  Score=39.37  Aligned_cols=32  Identities=31%  Similarity=0.480  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +++|+|+|..|...+..|.+.|++++++|+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999999999999999854

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.76  E-value=0.22  Score=37.43  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+++|+|.|.+|..++..|.+.|.+|+++++..
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999998874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.73  E-value=0.21  Score=37.35  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|.++++.|.+.|. +++|+++..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            469999999999999999999998 699998763

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.73  E-value=0.16  Score=42.62  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|..+|..++..|++|+++|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999765

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.72  E-value=0.46  Score=31.49  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      -+++|+|+|..|...+..+.+.| .++.++++..
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            35999999999999999999885 6899988764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.71  E-value=0.18  Score=40.74  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -.|.|||+|.-|...|..+++.|+.|+++|+.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999997753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.64  E-value=0.28  Score=34.70  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|.|-.|..++..|++.|. +++++|...
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            45789999999999999999999999 599998664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.61  E-value=0.2  Score=39.65  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|.|..|+++|..|.+.|++|++.|..+
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.58  E-value=0.21  Score=37.34  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +.|||+|..|..+|+.++.+++ .++++|..+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999998887 999999865

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=92.55  E-value=0.16  Score=37.40  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..-..|.|||+|.-|..+|...+..|+.|.++|+...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            3446799999999999999999999999999998763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.54  E-value=0.21  Score=37.41  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|.|..|..+|..|...|.+|+++++..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998865

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.52  E-value=0.2  Score=40.13  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++|+|.|..|++++..|.+.|.+|++.|..
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5999999999999999999999999999965

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=92.44  E-value=0.22  Score=39.44  Aligned_cols=33  Identities=33%  Similarity=0.346  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|.|..|..+|..+...|.+|+++|..+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            359999999999999999999999999998764

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.40  E-value=0.26  Score=37.01  Aligned_cols=32  Identities=34%  Similarity=0.528  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+.|||+|.+|..+|+.|..+|+  .+.++|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            58999999999999999999985  699999854

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08223 hypothetical protein; Validated

Probab=92.33  E-value=0.28  Score=36.96  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. ++.++|...
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            356789999999999999999999999 688988663

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.33  E-value=0.3  Score=35.56  Aligned_cols=35  Identities=34%  Similarity=0.429  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|.|-.|..++..|++.|. +.+++|...
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            35679999999999999999999999 799998654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.28  E-value=0.31  Score=36.93  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      +.+|.|||+|..|.++|+.|...++  .+.++|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4579999999999999999998887  588998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.15  E-value=0.22  Score=36.90  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|.|||.|..|...|..+.+.|++|+++++.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            37899999999999999999999999999774

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.00  E-value=0.27  Score=38.68  Aligned_cols=32  Identities=31%  Similarity=0.581  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|+|.|-.|+..+.-+++.|+.|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            58999999999999999999999999998764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.97  E-value=0.22  Score=42.07  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|..+|..++..|++|+++|..+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            469999999999999999999999999999775

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.94  E-value=0.32  Score=34.67  Aligned_cols=32  Identities=28%  Similarity=0.454  Sum_probs=28.4

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.||| +|..|...|..|.++|.+|.++++.+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            488997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.89  E-value=0.28  Score=38.30  Aligned_cols=35  Identities=34%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-.++|+|+|..|..++..|.+.|.+++++|+.+.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35699999999999999999999999999988753

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=91.88  E-value=0.12  Score=41.09  Aligned_cols=36  Identities=36%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             ccccEEEECCChHHHHHHHHHH--------------HcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLA--------------SAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~--------------~~g~~v~v~e~~~~   65 (119)
                      .-..++||||||+|...|..|+              +.-++|+++|..+.
T Consensus       217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            4467999999999999888773              23468999999873

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.82  E-value=0.28  Score=37.59  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=26.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++|+|+||.|+.++..+...|. +++++|..+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            69999999999999777777887 566777654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.78  E-value=0.28  Score=40.55  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +.+++|+|.|..|...+..|.+.|.+++++|+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            56899999999999999999999999999998864

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.68  E-value=0.4  Score=36.39  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....+.|||+|..|..+|+.+...++ .+.++|...
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            34579999999999999999998884 788998754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.52  E-value=0.36  Score=37.95  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .--++|+|-|..|+++|..|.+.|++|++.|...
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            4459999999999999999999999999999754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.51  E-value=0.3  Score=38.90  Aligned_cols=32  Identities=22%  Similarity=0.105  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|.|..|.++|..|.+.|.+|++.|..+
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            59999999999999999999999999999653

>PLN02494 adenosylhomocysteinase

Probab=91.45  E-value=0.36  Score=38.80  Aligned_cols=33  Identities=36%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|+|.|..|..+|..+...|.+|+++|..+
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999999999998764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.36  E-value=0.45  Score=35.57  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      ..++|+|+|-+|.++++.|++.|.+ +.++.+..
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3589999999999999999999996 99998753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.34  E-value=0.34  Score=42.00  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|||+|.+|+-+|..+.+.|.+|+++.++.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            479999999999999999999999999997653

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.30  E-value=0.87  Score=34.46  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCcEEEEe
Q 033419           32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIE   61 (119)
Q Consensus        32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e   61 (119)
                      .+++||| ++..|...|..|.++|+.|++++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~  189 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAH  189 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence            3799999 88899999999999999999995

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.28  E-value=0.33  Score=36.89  Aligned_cols=32  Identities=38%  Similarity=0.510  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||+|.-|...|..++..|+.|+++|..+
T Consensus         5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            58999999999999999999889999999884

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=91.27  E-value=0.45  Score=36.95  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|+|+|..|..++..|++.|. +++++|...
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            356789999999999999999999998 799998763

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.27  E-value=0.43  Score=36.79  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|+|+|-.|..++..|++.|. +++++|...
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            356789999999999999999999999 688998664

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=91.23  E-value=0.37  Score=39.66  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+..++|+|.|..|...+..|.+.|++++++|+++.
T Consensus       399 ~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (601)
T PRK03659        399 DKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS  434 (601)
T ss_pred             ccCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence            356799999999999999999999999999998764

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.22  E-value=1  Score=33.93  Aligned_cols=32  Identities=34%  Similarity=0.371  Sum_probs=28.1

Q ss_pred             ccEEEECCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .+++|||.| ..|...|..|.++|..|+++...
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~  190 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL  190 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence            379999999 78999999999999999998643

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.21  E-value=0.33  Score=37.88  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|.|||.|..|+..|..++. |++|+.+|...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            48899999999999987775 99999999864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.18  E-value=0.47  Score=35.93  Aligned_cols=32  Identities=22%  Similarity=0.465  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|.++|+.|..+++  .+.++|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            47899999999999999988887  589999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=91.14  E-value=1.4  Score=33.64  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc-------CCcEEEEe
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA-------GQKVVVIE   61 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~-------g~~v~v~e   61 (119)
                      +..+++|||+|..|++.|..+.+.       -.+|+++.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~   40 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS   40 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence            356899999999999999766552       25677775

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.12  E-value=0.3  Score=40.95  Aligned_cols=33  Identities=33%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHH-HcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|..|...|..++ ..|+.|+++|..+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999988 8899999999764

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=91.11  E-value=0.5  Score=34.47  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|-.|...+..|++.|+ +++++|...
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 688988664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.09  E-value=0.33  Score=40.70  Aligned_cols=33  Identities=36%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHH-HcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|...|..++ +.|++|+++|..+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999988 5899999999775

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=91.02  E-value=0.44  Score=35.08  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -.++|+|+|.+|..++..+.+.|.+++++++.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999999999999999999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.88  E-value=0.39  Score=35.86  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|.-|...|..|.++|++|.++++.+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58999999999999999999999999998764

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=90.83  E-value=0.47  Score=37.03  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            56789999999999999999999999 688998654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=90.78  E-value=0.5  Score=36.59  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ....|+|+|+|-.|..++..|++.|. +++++|..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45689999999999999999999999 69999976

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=90.75  E-value=0.47  Score=35.77  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +|+|||+|-.|..++..|+..|. +++++|...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~   33 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT   33 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            48999999999999999999999 688888653

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=90.75  E-value=0.49  Score=34.79  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC-----------CcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG-----------QKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-----------~~v~v~e~~~   64 (119)
                      ....+|+|||+|-.|..++..|++.|           .+++++|...
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            35678999999999999999999864           3788898654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.74  E-value=0.63  Score=28.23  Aligned_cols=31  Identities=39%  Similarity=0.573  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-CCcEEEEec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA-GQKVVVIEK   62 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~   62 (119)
                      .+++|+|.|..|..++..+.+. +.++.++++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4699999999999999999987 568889887

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07411 hypothetical protein; Validated

Probab=90.72  E-value=0.48  Score=37.01  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            356789999999999999999999999 688888653

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=90.64  E-value=0.55  Score=35.32  Aligned_cols=35  Identities=31%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ...+|+|+|.|-.|..+|..|+..|. +++++|...
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            46789999999999999999999999 699998664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08017 oxidoreductase; Provisional

Probab=90.62  E-value=0.56  Score=33.36  Aligned_cols=32  Identities=28%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |..|..++..|.++|++|+++.+..
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899998 8899999999999999999987653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.60  E-value=0.4  Score=38.31  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|+|-|..|+++|..|.+.|++|.+.|...
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            59999999999999999999999999999654

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=90.58  E-value=0.49  Score=36.04  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +|+|||+|-.|..++..|+..|. +++++|...
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            48999999999999999999999 688998664

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.58  E-value=0.39  Score=35.95  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||.|..|.+.|..+.+.|+  +|.++++..
T Consensus         8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            69999999999999999998885  788998764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.54  E-value=0.43  Score=36.09  Aligned_cols=32  Identities=31%  Similarity=0.591  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|+|+|..|...++.|++.|..|+++-+.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            58999999999999999999997787776654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.53  E-value=0.44  Score=38.27  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~   64 (119)
                      ++.|+|.|..|+..|..|+++  |++|+.+|...
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            499999999999999999988  47899998654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=90.53  E-value=0.5  Score=38.02  Aligned_cols=34  Identities=35%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .-.++|+|.|..|..+|.++...|.+|+++|..+
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp  287 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP  287 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3469999999999999999999999999997664

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=90.51  E-value=0.84  Score=34.28  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHc----CC-------cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA----GQ-------KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~----g~-------~v~v~e~~~   64 (119)
                      .-+++++|+|.+|+.+|..+...    |+       ++.++|+.-
T Consensus        25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G   69 (279)
T cd05312          25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG   69 (279)
T ss_pred             hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence            45799999999999999988665    76       688888764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.44  E-value=0.46  Score=37.85  Aligned_cols=31  Identities=35%  Similarity=0.565  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++|+|.|.+|+++|..|.+.|..|++.|+.
T Consensus        17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5999999999999999999999999999964

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=90.42  E-value=0.47  Score=37.85  Aligned_cols=38  Identities=24%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             cccccccEEEECC-ChHHHHHHHHHHHc-------CC--cEEEEecCC
Q 033419           27 VYKIKCDVVIVGS-GCGGGVAAAVLASA-------GQ--KVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~-G~~G~~~a~~l~~~-------g~--~v~v~e~~~   64 (119)
                      ++.....|.|||+ |..|..+|+.|...       ++  +++++|...
T Consensus        96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~  143 (444)
T PLN00112         96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSK  143 (444)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCc
Confidence            3445678999999 99999999999887       66  688888654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.38  E-value=0.7  Score=32.62  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=28.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|+ |..|..++..+.++|.+|+++++..
T Consensus         6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45889997 8889999999999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	6e-16
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	5e-12
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	1e-14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	5e-11
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	6e-12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	8e-09
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	6e-11
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-11
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-09
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-09
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	3e-09
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	2e-08
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-08
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	1e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	4e-07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-07
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	9e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-06
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	3e-06
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	3e-06
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	3e-06
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	3e-06
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	4e-06
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	4e-06
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	4e-06
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	7e-06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	7e-06
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	7e-06
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	1e-05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-05
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	1e-05
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-05
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	1e-05
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	2e-05
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-05
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-05
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	2e-05
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	3e-05
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	4e-05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	4e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	4e-05
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	4e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	5e-05
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-05
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	6e-05
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	6e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	6e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	7e-05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	8e-05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	8e-05
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	8e-05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	9e-05
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	9e-05
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	9e-05
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-04
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-04
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	1e-04
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	1e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-04
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-04
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	1e-04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	2e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	2e-04
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	2e-04
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	2e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	2e-04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-04
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-04
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	3e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	3e-04
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	3e-04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-04
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-04
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	4e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-04
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-04
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	5e-04
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	5e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	6e-04
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	6e-04
4fk1_A	304	Putative thioredoxin reductase; structural genomic	8e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	9e-04

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 71.2 bits (174), Expect = 6e-16
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72
            V++G+G G  V+A  L  AG + +++E G  +      
Sbjct: 7  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPD 46

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 60.1 bits (145), Expect = 5e-12
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQS 118
           + LYV D S+ P +VGVNP +TI + A     R  E + +Q 
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITALAE----RNVERIIKQD 500

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 67.5 bits (164), Expect = 1e-14
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70
            +++GSG GG VAA  L  AG    ++E G  +    
Sbjct: 13 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPG 50

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 57.5 bits (138), Expect = 5e-11
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQS 118
            GLYV D S+ P  VGVNP +TI + A     R  + +    
Sbjct: 468 PGLYVVDGSLVPGNVGVNPFVTITALAE----RNMDKIISSD 505

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70
          IK DVVIVGSG  G   A  L  AG KV + + G   +   
Sbjct: 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 75  EAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
             + L++      P+A G NP +T       L+ +  E +++ 
Sbjct: 574 GFKNLFLGGCGNIPTAYGANPTLTAM----SLAIKSCEYIKQN 612

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          +  V I+G G  G VA   L   G  V + E+ 
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS 55

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          K DV+++G+G  G VAA+++  +G KV ++EK  +
Sbjct: 5  KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF 39

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 56.9 bits (137), Expect = 8e-11
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
            D++++G G GG   A+ +A  G +V+++E+ 
Sbjct: 7  VFDLIVIGGGPGGSTLASFVAMRGHRVLLLERE 39

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          K DV+I+G G  G  AA  L+  G K+++++   +
Sbjct: 6  KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
           DVV+ G G  G  A+   A AG  V+V+E+ + +
Sbjct: 42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            V++G+G GG ++AA L+ AG +V V E+
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFER 31

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
            V+VG+G GG +A A LA  G +++V+EK   
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAM 34

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 31  KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
              V++VG+G  G  A+     AG  V++++K  + 
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK-----GNYFTPKDYSLLEAEGLYVCD 83
            D +IVG+G  G V A  LAS+GQ+V+++++     GN +   D       G+ +  
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDD-----AGVLIHP 81

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 20  TKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            + +  +      DVV+VGSG  G  AA     +G KV++IEK
Sbjct: 115 RQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEK 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 23/97 (23%)

Query: 26  NVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGL---YV- 81
           N + + C +++        V   + A+    + +       TP      E + L   Y+ 
Sbjct: 260 NAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPD-----EVKSLLLKYLD 312

Query: 82  CDASVFPS-AVGVNPM-ITIQSTAYCLSKRIAESLRE 116
           C     P   +  NP  ++I          IAES+R+
Sbjct: 313 CRPQDLPREVLTTNPRRLSI----------IAESIRD 339

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 12/59 (20%), Positives = 31/59 (52%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPS 89
          + DV+++G+G    + + +++  G+KV+ +++  Y+  +  S+   E LY     +   
Sbjct: 6  EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 29  KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           K   DVVI+GSG  G  AA     AG KV+++EK
Sbjct: 124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEK 157

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK-----GNYFTPKD 70
             ++IVG+G  G V    LA  G +V +I++     GN +  +D
Sbjct: 3  SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARD 47

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 24/36 (66%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
            DV+I+G+G    + + +L+  G+K++V+++  Y+
Sbjct: 20 HYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY 55

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          D +IVGSG  G V A  L    +KV+VIEK N+
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 31 KCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEK-----GNYFTPKDYSLLEAEGLYVCD 83
          + D+ +VGSG  G   A  +A+   ++V+V+E+     GN ++  +       G+ V  
Sbjct: 7  RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAE----PQTGIEVHK 61

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
              V ++GSG     AA      G +V +IE+G
Sbjct: 3  PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG 36

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           I  DV I+G+G  G  A         KVV+IE G Y
Sbjct: 6  VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAY 42

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
            DVV+VG G  G   A  +A  G +V+V+E+ 
Sbjct: 4  SYDVVVVGGGPVGLATAWQVAERGHRVLVLERH 36

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          +K  V I+G+G  G +   +L  AG   V++E+
Sbjct: 1  MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           DV+I G G GG + A +L   G +VVV+E+
Sbjct: 7  IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          I+ + ++VG+G GG VAA   A  GQKV ++EKGN 
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL 37

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYF 66
           + I+G+G  G  A   L  AG     ++E+ ++ 
Sbjct: 8  RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 15 KGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAA----AVLASAGQKVVVIEKGN 64
          K  ++ K  +     ++ D++I+G G  G  AA          G KV ++EK  
Sbjct: 6  KKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          D + +G G  G   +A L + G + +++++  +
Sbjct: 45 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF 77

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           + DV++VG+G GG   A  LA  G +V+V+E+
Sbjct: 4  HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          +K D++I+GSG  G  A      AG  V++ +  
Sbjct: 1  MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAH 34

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          I+ DV+I+G G  G   A  LA      +V+E+
Sbjct: 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQ 57

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
            D++++G+G GG  AA   A  G KV+ +E G  
Sbjct: 6  TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEV 40

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          I+  ++I+G G GG VAA      G   V++E 
Sbjct: 4  IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 23 SKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQ------KVVVIEKGN 64
          ++  + +   D+++VG G G   AA              K+++++K +
Sbjct: 14 AEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          I  DV ++GSG GG VAA   A  G K V IEK
Sbjct: 5  IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEK 37

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
          D ++VG G  G  AA  L +AG+KV+++E
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLE 31

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
          ++ DV IVG+G  G  AA  L  AG  V VIE
Sbjct: 4  LQRDVAIVGAGPSGLAAATALRKAGLSVAVIE 35

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          +K DVV++G+G  G   A  LA A   V++ + 
Sbjct: 3  LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADP 35

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
          KCDVV+VG G  G  AA +L  +G  VVV+E
Sbjct: 4  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLE 34

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 18/89 (20%)

Query: 3   ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           +     +  L   GL      K+        ++IVG+G  G VA  +L  AG  V ++E 
Sbjct: 24  DLKLRYLDVLIDNGLNPPGPPKR--------ILIVGAGIAGLVAGDLLTRAGHDVTILEA 75

Query: 63  GN----------YFTPKDYSLLEAEGLYV 81
                       +    + S       Y 
Sbjct: 76  NANRVGGRIKTFHAKKGEPSPFADPAQYA 104

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 32  CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
            DV++VG+G  G  AA   + +G +V+++++    
Sbjct: 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA 163

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 24/36 (66%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
            DV+++G+G    + + +L+  G+KV+ I+K +++
Sbjct: 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 46

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           DVV+VG G  G + A  L + G   +V+EK
Sbjct: 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEK 80

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           + DVV++G G GG  AA   A  G KV ++E+
Sbjct: 5  AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVER 37

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 32  CDVVIVGSGCGGGVAAAVLA--SAGQKVVVIEKGNYF 66
            DV+IVG+G  G  AA V+A      KV +IE     
Sbjct: 66  SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 29 KIKCDVVIVGSGCGGGVAAAV---LASAGQKVVVIEKG 63
          K   + V++G   GG + +A+   LA   +   + E G
Sbjct: 15 KRHYEAVVIG---GGIIGSAIAYYLAKENKNTALFESG 49

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 32 CDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGNYF 66
           DVV+VG+G  G  AA  ++ +   +V +IE+    
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            V++VG+G  G + A  L  AG +VVV+E+
Sbjct: 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLER 42

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            V++VG+G  G + A  L   G  V+V+E+
Sbjct: 13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 29 KIKCDVVIVGSGCGGGVAAAV---LASAGQKVVVIEKG 63
            K ++V++G   GG V   +   LA  G++V VIEK 
Sbjct: 3  PEKSEIVVIG---GGIVGVTIAHELAKRGEEVTVIEKR 37

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
             VV++G G  G  +A  L  AG KV V+E
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLE 41

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   STIVQSLTQKGLQ---VTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
             +   L + GL    + K  K    K    V+I+GSG  G  AA  L S G  V ++E 
Sbjct: 250 HRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA 309

Query: 63  GNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITI 99
            +    +  +  +   +    A V     G NPM  +
Sbjct: 310 RDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVV 345

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68
          DV++VG+G  G  A   LA  G K ++++  +    
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 20 TKDSKQNVYKI---KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            DS    Y +   + D V+VG+G  G  AA  L+ AG     + K
Sbjct: 4  VSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTK 49

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          + DV++VG+G  G  A   L   G+ V VIE   
Sbjct: 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 49

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
              + +I+G+G  G   AA LA  G+ V V + G 
Sbjct: 2  SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 26 NVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           +   + D V++G+G  G  AA  ++ +GQ   ++ K
Sbjct: 2  KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSK 38

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D++++G G GG  AA   A    KV ++EK 
Sbjct: 4  DLIVIGGGSGGMAAARRAARHNAKVALVEKS 34

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 30 IKCDVVIVGSGCGGGVAA---AVLASAGQKVVVIEKGN 64
          +   +VI+G G  G  AA   A       +V VI+   
Sbjct: 1  MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 38

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70
          K DV+++G+G GG VAA   A  G K  +IEK      K 
Sbjct: 3  KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 31 KCDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEK 62
          + DV+IVG G  G   AA LA     +  ++E+
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQ 64

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 20 TKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          T++       +  DV+++G G  G +AA   A  G  V++++KGN
Sbjct: 15 TENLYFQSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 29 KIKCDVVIVGSGCGGGVAAAV-LASAGQKVVVIEK 62
             CD +++G G   G+ AAV     G   +V+  
Sbjct: 3  VQYCDSLVIGGG-LAGLRAAVATQQKGLSTIVLSL 36

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          K DVVI+G+G  G + A      G++V+VI+   
Sbjct: 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
             VVIVG+G  G  AA VLA AG +V V+E
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          DVV+VG+G  G  A     S G  V   E  +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS 54

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          DV+I+G    G  AA  L  A + +++++ G  
Sbjct: 4  DVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 32  CDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYF 66
            D+VIVG+G  G  AA VL++     ++ ++E G   
Sbjct: 80  TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 21  KDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67
              +Q         ++VG+G  G  AA  LA  G +VV++EK   F+
Sbjct: 82  PVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS 128

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          DVV++G+G GG VAA   A  G    ++E   
Sbjct: 5  DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY 36

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL 74
          D +IVG+G GG +AA  L+ AG+KV+++E+G           
Sbjct: 9  DYIIVGAGPGGIIAADRLSEAGKKVLLLERG----GPSTKQT 46

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           +V +VG G  G   A  L S G   V++E    
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 50

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 16  GLQVTKDSKQNVYK--------------IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
           G+++ +   Q  Y               +  DV I+G G   G+ AA+       V +IE
Sbjct: 82  GMKIER---QGYYDFHEEPVVEPGEIERVVVDVAIIGGGP-AGIGAALELQQYLTVALIE 137

Query: 62  KGNYF 66
           +  + 
Sbjct: 138 ERGWL 142

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 6   STIVQSLTQKGL---QVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIE 61
             +   L + GL    + K  K    K    V+I+GSG  G  AA  L S G  V ++E
Sbjct: 79  HRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNY 65
           I  DV+++G+G  G  AA  L    G   ++++    
Sbjct: 8  DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 31  KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
              V++VG+G  G  AA  L   G  VV+ E G 
Sbjct: 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR 424

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
            D++++GSG GG V A   A  G KV V+EK
Sbjct: 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEK 56

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D V++G+G  G   A ++  AG KV+ IE G
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAG 41

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          D++++G+G GG VAA   A  G KV V+EK
Sbjct: 3  DLLVIGAGPGGYVAAIRAAQLGMKVGVVEK 32

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          + DVVI+G G GG VAA   A  G K   IEK
Sbjct: 6  ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEK 37

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 31  KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
           K  V+IVG+G  G  AA VL  +G  V + +   
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 422

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVV++G G GG VA+   A  G K   +EK
Sbjct: 4  DVVVIGGGPGGYVASIKAAQLGMKTACVEK 33

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 14/54 (25%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN---------Y-----FTPKDYS 72
          DVV++G G  G  A   L  +G   V+++            +     F+P  +S
Sbjct: 5  DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWS 58

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DVVI+G G  G VAA   A  G     +EK
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLGFNTACVEK 36

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           V ++G+G  G  AA  L   G  V V E    
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK 47

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 34  VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           + +VG+G  G   A   A+ G +V + +  + 
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 407

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          +  CDV+I+GSG  G   A  LA    +V+V+ KG
Sbjct: 6  EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKG 39

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          DV++VG G  G  AA  LA AG KV+V++ G
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGG 33

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67
          + D +++G+G  G      L++ G +VVV+E+     
Sbjct: 9  EADYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPG 44

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 5/26 (19%)

Query: 77  EGLYVCDASVFPSAVGVNP-----MI 97
            GL V DASV P  V VNP     MI
Sbjct: 493 TGLRVADASVMPEHVTVNPNITVMMI 518

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          D  ++G+G  G  A+ VL  A +++ + +    
Sbjct: 8  DCAVIGAGPAGLNASLVLGRARKQIALFDNNTN 40

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          V I+G G  G   A +L   G  V V E+
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGIDVSVYER 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.24
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.98
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.98
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.92
3dme_A	369	Conserved exported protein; structural genomics, P	98.86
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.84
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.83
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.82
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.82
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.81
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.81
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.8
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.8
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.78
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.77
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.77
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.77
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.77
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.74
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.72
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.72
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.72
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.71
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.71
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.69
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.69
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.69
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.69
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.68
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.68
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.67
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.67
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.67
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.66
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.65
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.65
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.65
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.65
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.64
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.64
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.63
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.63
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.63
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.62
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.61
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.61
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.6
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.6
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.59
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.58
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.58
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.57
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.57
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.56
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.56
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.56
3atr_A	453	Conserved archaeal protein; saturating double bond	98.55
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.55
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.55
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.53
4dna_A	463	Probable glutathione reductase; structural genomic	98.53
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.53
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.52
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.51
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.51
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.51
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.51
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.51
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.51
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.51
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.51
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.51
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.5
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.5
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.49
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.49
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.49
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.48
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.48
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.47
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.47
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.47
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.46
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.46
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.45
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.45
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.45
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.45
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.45
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.44
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.44
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.43
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.43
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.43
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.43
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.43
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.43
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.42
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.41
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.41
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.41
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.41
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.4
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.39
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.39
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.39
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.39
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.39
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.39
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.38
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.38
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.37
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.37
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.37
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.37
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.37
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.37
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.36
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.36
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.36
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.36
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.36
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.35
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.35
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.34
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.34
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.33
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.33
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.32
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.31
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.31
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.31
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.3
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.3
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.29
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.28
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.28
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.27
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.27
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.27
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.26
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.26
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.26
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.26
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.26
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.25
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.25
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.25
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.25
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.25
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.25
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.24
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.24
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.24
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.24
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.2
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.2
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.2
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.19
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.19
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.19
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.19
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.18
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.18
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.16
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.16
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.16
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.15
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.14
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.11
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.09
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.08
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.04
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.04
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.03
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.02
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.02
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.02
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.01
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.01
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.97
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.96
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.96
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.96
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.95
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.95
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.95
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.94
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.94
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.93
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.88
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.88
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.87
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.86
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.84
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.82
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.79
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.79
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.72
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.67
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.57
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.03
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.73
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.7
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.67
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.52
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.48
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.43
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.43
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.39
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.34
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.33
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.3
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.29
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.19
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.18
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.12
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.09
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.95
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.94
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.94
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.93
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.92
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.92
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.89
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.83
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	95.82
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.82
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.79
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.76
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.75
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.75
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.71
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.7
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.68
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.61
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.52
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.51
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.5
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.48
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.47
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.42
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.36
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.34
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.33
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.31
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.28
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.25
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.25
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.25
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.21
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.21
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.2
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.2
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.2
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.19
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.19
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.16
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.16
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.15
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.14
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.1
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.09
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.05
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.03
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.01
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.01
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.99
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.98
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.95
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.94
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.9
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.88
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.88
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.87
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.86
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.83
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.83
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.83
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.82
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	94.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.76
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.75
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.74
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	94.73
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.71
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.68
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.68
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.67
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.62
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.6
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	94.55
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.51
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.5
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.48
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.46
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.45
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.45
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.43
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.41
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.34
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	94.32
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.29
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.29
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.28
3r9u_A	315	Thioredoxin reductase; structural genomics, center	94.22
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.19
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.18
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.18
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.17
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.15
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.13
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	94.11
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.08
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.08
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.08
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.03
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.98
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.97
4dna_A	463	Probable glutathione reductase; structural genomic	93.95
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.95
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.95
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.92
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.9
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.87
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.87
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.87
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.86
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.85
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.84
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.83
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.8
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.8
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.77
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.73
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.73
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.72
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.69
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	93.63
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.62
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.6
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.58
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.57
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.53
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.52
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.5
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	93.45
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.44
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.43
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.42
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.41
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	93.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.36
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.35
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	93.33
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	93.32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.22
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	93.2
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.2
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.19
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.16
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.12
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.09
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.07
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.05
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.98
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.97
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	92.95
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.88
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.86
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	92.83
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.83
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	92.82
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	92.82
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.8
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.76
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.76
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	92.74
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	92.73
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.72
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	92.7
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.7
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.68
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.67
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.62
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.6
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.6
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.59
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.58
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.56
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.54
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.52
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.51
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.5
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.49
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.47
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.47
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.46
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.45
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.44
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.42
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.37
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.34
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	92.31
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.17
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.17
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.16
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.16
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.16
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	92.14
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.1
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.06
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.01
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	91.96
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.94
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.89
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	91.88
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.83
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	91.82
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.82
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.82
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.82
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.78
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.77
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.76
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.75
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.73
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.71
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.68
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	91.67
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.65
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.64
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.61
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.56
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.55
3on5_A	362	BH1974 protein; structural genomics, joint center	91.54
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.48
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	91.35
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	91.32
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.28
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	91.28
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	91.25
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.21
3l07_A	285	Bifunctional protein fold; structural genomics, ID	91.2
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	91.19
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.16
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	91.15
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.09
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.01
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	90.99
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.98
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	90.9
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	90.84
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.83
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	90.8
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	90.78
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	90.68
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	90.67
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	90.67
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.51
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.49
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	90.47
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.45
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	90.44
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.19
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	90.12
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	90.07
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.05
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.04
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	90.04

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.24  E-value=1.1e-11  Score=85.24  Aligned_cols=41  Identities=27%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ++||+||||||+|+++|+.|+++|++|+|+|+.+.+||...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            58999999999999999999999999999999999888654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.98  E-value=6.4e-10  Score=85.72  Aligned_cols=44  Identities=23%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCcccCceeec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ..+||+|||||++||++|++|++ .|++|+|+|+.+.+||..++.
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~   53 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTD   53 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeE
Confidence            46899999999999999999987 599999999999999986553

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.98  E-value=4e-10  Score=83.48  Aligned_cols=38  Identities=39%  Similarity=0.503  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +.|||+||||||+|+++|+.|+++|++|+|+|+.+.++
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~   40 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG   40 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            46999999999999999999999999999999987665

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.92  E-value=8.3e-10  Score=81.45  Aligned_cols=41  Identities=37%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+||+|+++|++|++  .|++|+|+|+.+.+|+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            56899999999999999999975  599999999998888753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.86  E-value=1.3e-08  Score=74.80  Aligned_cols=40  Identities=28%  Similarity=0.440  Sum_probs=35.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +.++||+|||+|++|+++|+.|+++|++|+|+|+.+.++.
T Consensus         2 ~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~   41 (369)
T 3dme_A            2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGT   41 (369)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            3468999999999999999999999999999999865553

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.84  E-value=1.1e-08  Score=76.27  Aligned_cols=38  Identities=37%  Similarity=0.483  Sum_probs=34.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      |..++||+|||+|++|+++|+.|+++|++|+|+|+...
T Consensus         2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~   39 (382)
T 1y56_B            2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFI   39 (382)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            45679999999999999999999999999999999853

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.83  E-value=3.9e-09  Score=81.34  Aligned_cols=44  Identities=25%  Similarity=0.467  Sum_probs=40.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...+||+|||+|++|+++|..|+++|++|+++|+++.+||...+
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            45789999999999999999999999999999999999988654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.82  E-value=6e-09  Score=77.51  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ..+....+||+|||+|++|+++|+.|+++|++|+|+|+....++
T Consensus        11 ~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           11 IRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             ---CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             hhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            33445679999999999999999999999999999999865443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.82  E-value=8.2e-09  Score=79.22  Aligned_cols=45  Identities=33%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..|+...+||+|||+|++|+.+|+.|++.|++|+|+|+.+..++.
T Consensus        21 ~~M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~   65 (417)
T 3v76_A           21 QSMVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEK   65 (417)
T ss_dssp             -------CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             ccccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCce
Confidence            446667899999999999999999999999999999999877643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.81  E-value=9.8e-09  Score=80.01  Aligned_cols=44  Identities=30%  Similarity=0.418  Sum_probs=40.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcccCceeec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g~~~~~~   73 (119)
                      ..+||+|||+|++|+++|+.|++.| ++|+|+|+.+.+||..++.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~   51 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTV   51 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeee
Confidence            4679999999999999999999999 9999999999999986554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.81  E-value=4.6e-09  Score=76.44  Aligned_cols=40  Identities=35%  Similarity=0.473  Sum_probs=35.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...||++|||+||+|+++|.+|++.|++|+|+|+.. +||.
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~-~gG~   43 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI-PGGQ   43 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGG
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCe
Confidence            357999999999999999999999999999999864 4544

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.80  E-value=4.4e-09  Score=76.56  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +++|||+|||+||+|+++|+++++.|++|+|+|+...
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~   40 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN   40 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4579999999999999999999999999999998753

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.80  E-value=4.7e-09  Score=80.96  Aligned_cols=40  Identities=28%  Similarity=0.454  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|+|||+|++||++|++|+++|++|+|+|+++.+||...+
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t   42 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYV   42 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CE
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEE
Confidence            6999999999999999999999999999999999987543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.78  E-value=5e-09  Score=79.71  Aligned_cols=43  Identities=26%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC------CcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG------QKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g------~~v~v~e~~~~~g~~~~~   72 (119)
                      +.+||+|||||++|+++|+.|+++|      ++|+|+|+.+.+||...+
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s   52 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT   52 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence            4579999999999999999999999      999999999988876544

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.77  E-value=1.4e-08  Score=76.58  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=37.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +||+|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~   41 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTN   41 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceee
Confidence            48999999999999999999999999999999999887654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.77  E-value=5.3e-09  Score=75.76  Aligned_cols=37  Identities=35%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +..||++|||+||+|+++|..+++.|++|+++|+...
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            4569999999999999999999999999999998764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.77  E-value=1.2e-08  Score=77.28  Aligned_cols=41  Identities=39%  Similarity=0.633  Sum_probs=37.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +||+|||+|++|+++|+.|++.|++|+|+|+.+.+||...+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   42 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS   42 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence            69999999999999999999999999999998888887653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.77  E-value=1.1e-08  Score=79.70  Aligned_cols=43  Identities=42%  Similarity=0.681  Sum_probs=39.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+++.+||..++
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t   45 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   45 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence            4679999999999999999999999999999999999987544

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.74  E-value=3.4e-08  Score=74.03  Aligned_cols=38  Identities=37%  Similarity=0.580  Sum_probs=34.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+....+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            45899999999999999999999999999999987544

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.72  E-value=1.4e-08  Score=77.23  Aligned_cols=45  Identities=29%  Similarity=0.408  Sum_probs=40.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCceeec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ...+|++|||+|++|+++|+.|++. |++|+|+|+++.+||..++.
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~   50 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE   50 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence            3478999999999999999999998 99999999999999876543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.72  E-value=1.1e-08  Score=74.45  Aligned_cols=61  Identities=23%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             CchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCc
Q 033419            3 ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPK   69 (119)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~   69 (119)
                      +....|+++|.+.++...      .....+||+|||+|++|+.+|+.|++. |++|+|+|+.+.+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~------~~~~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           17 IKESIVSREMTRRYMTDM------ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHH------HHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             cchhhhHHHHHHHHHHhh------hhccccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            456678888876644210      113568999999999999999999997 9999999999877654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.72  E-value=3.2e-08  Score=74.92  Aligned_cols=40  Identities=35%  Similarity=0.567  Sum_probs=37.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ||+|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~   41 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN   41 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence            7999999999999999999999999999999999887554

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.71  E-value=2e-08  Score=76.87  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=40.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ....+|++|||+|++|+++|+.|++.|++|+|+|+.+.+||..++
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            346789999999999999999999999999999999999987654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.71  E-value=2.1e-08  Score=76.36  Aligned_cols=43  Identities=37%  Similarity=0.512  Sum_probs=39.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+||+|||+|++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            3568999999999999999999999999999999998887754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.69  E-value=1.7e-08  Score=76.16  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +....+++||+|||||++|+++|+.|++.|++|+|+|+.+...
T Consensus        17 ~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           17 NLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            3344567999999999999999999999999999999987543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.69  E-value=5.6e-08  Score=72.66  Aligned_cols=39  Identities=41%  Similarity=0.485  Sum_probs=35.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHH-cC-CcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLAS-AG-QKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~-~g-~~v~v~e~~~~~   66 (119)
                      ...++||+|||+|++|+++|+.|++ +| ++|+|+|+....
T Consensus        18 ~~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           18 PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            3457899999999999999999999 99 999999998743

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.69  E-value=2.3e-08  Score=75.57  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g~~~~~   72 (119)
                      ..+||+|||+|++|+++|+.|+++| ++|+|+|+.+.+||...+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t   48 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS   48 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence            5689999999999999999999999 899999999999986543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.68  E-value=2.5e-08  Score=75.80  Aligned_cols=41  Identities=27%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~   69 (119)
                      ..++||+|||+|++|+++|+.|+++|+ +|+|+|+....++.
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~   45 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAI   45 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCC
Confidence            457899999999999999999999999 99999998876543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.68  E-value=3.4e-08  Score=75.32  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=35.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .++||+|||+|++|+.+|+.|+++|.+|+|+|+.+.+|+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~   41 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR   41 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCch
Confidence            469999999999999999999999999999999987654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.67  E-value=2.8e-08  Score=76.05  Aligned_cols=42  Identities=31%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~g~~~~~~   73 (119)
                      .||+|||||++|+++|++|+++|.  +|+|+|+.+.+||...+.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~   46 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSV   46 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEE
Confidence            589999999999999999999999  999999999999876553

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.67  E-value=4.3e-08  Score=79.17  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .+||+|||+|++|+++|+.|+++|++|+|+|+...+++
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~  301 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQ  301 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcccc
Confidence            48999999999999999999999999999999866553

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.67  E-value=2.7e-08  Score=73.90  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=35.4

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ||..++||+|||+|++|+++|+.|+++|++|+|+|+...
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            345679999999999999999999999999999999764

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.66  E-value=4.5e-08  Score=75.43  Aligned_cols=45  Identities=31%  Similarity=0.333  Sum_probs=40.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ....||+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   53 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTA   53 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeee
Confidence            356799999999999999999999999999999999999875443

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.65  E-value=3.6e-08  Score=76.14  Aligned_cols=43  Identities=28%  Similarity=0.235  Sum_probs=38.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+||+|||+|++|+++|+.|+++|++|+|+|+.+.+||...
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   53 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   53 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence            4568999999999999999999999999999999999988643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.65  E-value=2.1e-08  Score=77.72  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=35.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |+..++|++|||+|++|+++|+.|++.|++|+|+|+ ..+||.
T Consensus        22 M~~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~   63 (484)
T 3o0h_A           22 MGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGT   63 (484)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHH
T ss_pred             CCcCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCc
Confidence            333579999999999999999999999999999999 456654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.65  E-value=3e-08  Score=73.33  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +.+.+.||+|||+|++|+++|+.|+ +|++|+|+|+.+.++
T Consensus         5 ~~~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g   44 (381)
T 3nyc_A            5 HHPIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPG   44 (381)
T ss_dssp             EEEEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTT
T ss_pred             CCCCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcc
Confidence            3456799999999999999999999 699999999987665

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.64  E-value=4.8e-08  Score=75.33  Aligned_cols=42  Identities=29%  Similarity=0.454  Sum_probs=38.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      +||+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~   81 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSS   81 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceec
Confidence            899999999999999999999999999999999999875543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.64  E-value=4e-08  Score=75.29  Aligned_cols=43  Identities=26%  Similarity=0.313  Sum_probs=38.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t   57 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT   57 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence            4679999999999999999999999999999999999987544

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.63  E-value=9.7e-08  Score=71.00  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ++||+|||+|++|+++|+.|+++|++|+|+|+....+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5799999999999999999999999999999987654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.63  E-value=5.4e-08  Score=78.33  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .+||+|||+|++|+++|+.|+++|++|+|+|+...++
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g  308 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA  308 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccc
Confidence            3899999999999999999999999999999976655

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.63  E-value=3.4e-08  Score=77.14  Aligned_cols=42  Identities=31%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +.++||+|||+|++|+++|+.|++.|++|+|+||.+..|++.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            567999999999999999999999999999999999887764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.62  E-value=3.4e-08  Score=72.22  Aligned_cols=43  Identities=21%  Similarity=0.116  Sum_probs=37.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ++..+|++|||+|++|+.+|..|++.|++|+|+|+.+.+|+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   44 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL   44 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee
Confidence            3456899999999999999999999999999999998877654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.61  E-value=3.1e-08  Score=74.61  Aligned_cols=37  Identities=38%  Similarity=0.695  Sum_probs=33.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..++||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3468999999999999999999999999999999863

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.61  E-value=8.2e-08  Score=74.67  Aligned_cols=44  Identities=25%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g~~~~~   72 (119)
                      ...+|++|||+|++|+++|+.|+++| .+|+|+|+.+.+||..++
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            35689999999999999999999998 799999999999988665

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.60  E-value=3.4e-08  Score=74.46  Aligned_cols=41  Identities=32%  Similarity=0.427  Sum_probs=36.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|++|+.+|+.|+++  |++|+|+|+...+++.
T Consensus        77 ~~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg  119 (344)
T 3jsk_A           77 HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG  119 (344)
T ss_dssp             HHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence            3578999999999999999999997  9999999999877654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.60  E-value=5.2e-08  Score=74.10  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=40.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecC-CcccCceeec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG-NYFTPKDYSL   73 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~-~~~g~~~~~~   73 (119)
                      ...+||+|||+|++|+++|+.|.++|++|+|+|+. +.+||..++.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            45689999999999999999999999999999999 8888875543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.59  E-value=8.8e-08  Score=69.93  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      .+|++|||+|++|+.+|..|++.|++|+++|+.+.+|+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            58999999999999999999999999999999988877643

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.58  E-value=6.2e-08  Score=74.30  Aligned_cols=42  Identities=29%  Similarity=0.282  Sum_probs=37.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCceee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~~   72 (119)
                      .+||+|||+|++|+++|+.|++.|  ++|+|+|+.+.+||...+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~   47 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT   47 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence            579999999999999999999999  999999999888875433

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.58  E-value=4.9e-08  Score=75.69  Aligned_cols=40  Identities=38%  Similarity=0.576  Sum_probs=36.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +.+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~   63 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT   63 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            4699999999999999999999999999999998888875

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.57  E-value=5.8e-08  Score=75.92  Aligned_cols=47  Identities=21%  Similarity=0.444  Sum_probs=40.4

Q ss_pred             cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      .+.+...+|++|||+|++|+.+|+.|+++|++|+++|+++.+||...
T Consensus        14 ~~~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~   60 (475)
T 3p1w_A           14 LYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA   60 (475)
T ss_dssp             ---CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cccccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcc
Confidence            34456789999999999999999999999999999999998887644

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.57  E-value=4.4e-08  Score=75.55  Aligned_cols=42  Identities=29%  Similarity=0.349  Sum_probs=38.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..++|++|||+|++|+.+|..|++.|++|+++|+.+.+||.+
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~   43 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNC   43 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHH
T ss_pred             CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcc
Confidence            346999999999999999999999999999999888888763

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.56  E-value=3.3e-07  Score=75.36  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=39.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...+||+|||+|++|+++|+.|++.|++|+|+|+.+.+||+.++
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T  377 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWD  377 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeee
Confidence            34689999999999999999999999999999999988886444

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.56  E-value=8.5e-08  Score=73.52  Aligned_cols=46  Identities=20%  Similarity=0.507  Sum_probs=41.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      |...+|++|||+|++|+.+|..|+++|++|+++|+++.+||...+.
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~   48 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI   48 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence            3457899999999999999999999999999999999999875543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.56  E-value=5.9e-08  Score=73.01  Aligned_cols=41  Identities=44%  Similarity=0.563  Sum_probs=37.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|++|||+|++|+++|+.|++.|++|+|+|+++.+||...+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            68999999999999999999999999999999988887543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.55  E-value=4.3e-08  Score=75.22  Aligned_cols=39  Identities=31%  Similarity=0.566  Sum_probs=35.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      |...+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         3 m~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            3 KELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            455799999999999999999999999999999998753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.55  E-value=5.6e-08  Score=71.99  Aligned_cols=37  Identities=30%  Similarity=0.393  Sum_probs=34.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ++||+|||+|++|+++|+.|+++|++|+|+|+....+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~   38 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPH   38 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            5799999999999999999999999999999987654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.55  E-value=8.8e-08  Score=72.40  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g   67 (119)
                      +..+||+|||+|++|+++|..|++.|++ |+|+|+.+.++
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   41 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence            3468999999999999999999999999 99999987654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.53  E-value=9.4e-08  Score=69.57  Aligned_cols=41  Identities=34%  Similarity=0.396  Sum_probs=35.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |...+|++|||+|++|+.+|..|++.|++|+|+|+. .+|+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~   53 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGL   53 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCcc
Confidence            456799999999999999999999999999999985 44543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.53  E-value=6.8e-08  Score=74.38  Aligned_cols=39  Identities=26%  Similarity=0.503  Sum_probs=35.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .++|++|||+|++|+++|+.|++.|++|+|+|+ ..+||.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~   42 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGT   42 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCc
Confidence            468999999999999999999999999999999 556654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.53  E-value=1e-07  Score=68.82  Aligned_cols=38  Identities=34%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|++|||+|++|+.+|+.|++.|++|+|+|+.  +|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~   51 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQ   51 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGG
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCe
Confidence            4689999999999999999999999999999998  5554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.52  E-value=8.5e-08  Score=75.97  Aligned_cols=40  Identities=18%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...+||+|||||++|+.+|+.|+++|++|+|+|+++..++
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~G   55 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASG   55 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence            3579999999999999999999999999999999965544

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.51  E-value=2.2e-07  Score=72.82  Aligned_cols=42  Identities=17%  Similarity=0.427  Sum_probs=37.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +...+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~   81 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS   81 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            345799999999999999999999999999999999867765

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.51  E-value=1e-07  Score=74.59  Aligned_cols=39  Identities=36%  Similarity=0.584  Sum_probs=35.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..++||+|||+|++|+++|+.|++.|++|+|+|+.+...
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            457899999999999999999999999999999987543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.51  E-value=9.1e-08  Score=71.84  Aligned_cols=37  Identities=38%  Similarity=0.584  Sum_probs=34.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+.+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.51  E-value=8.8e-08  Score=70.90  Aligned_cols=43  Identities=21%  Similarity=0.100  Sum_probs=37.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +...+|++|||+|++|+.+|..|++.|++|+|+|+.+.+|+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~   53 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQL   53 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcc
Confidence            3456899999999999999999999999999999988777653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.51  E-value=1.2e-07  Score=73.10  Aligned_cols=39  Identities=41%  Similarity=0.445  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .+||++|||+|++|+.+|..|++.|++|+|+|+.+.+|+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG   40 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEG   40 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCC
Confidence            468999999999999999999999999999999874443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.51  E-value=8.8e-08  Score=69.65  Aligned_cols=38  Identities=32%  Similarity=0.277  Sum_probs=33.0

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .....+||+|||+|++|+.+|..|++.|++|+|+|+.+
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34467899999999999999999999999999999954

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.51  E-value=1e-07  Score=71.79  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ...+||+|||+|++|+++|..|++.|++|+|+|+.+..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            34689999999999999999999999999999998653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.51  E-value=1.2e-07  Score=72.86  Aligned_cols=39  Identities=33%  Similarity=0.582  Sum_probs=35.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+.+..++
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~   63 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGR   63 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCc
Confidence            568999999999999999999999999999999887654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.51  E-value=1.4e-07  Score=73.63  Aligned_cols=41  Identities=34%  Similarity=0.374  Sum_probs=36.0

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .+...+||+|||+|++|+++|..|++.|++|+|+|+.+...
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   47 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT   47 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            35678999999999999999999999999999999987554

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.50  E-value=9e-08  Score=69.44  Aligned_cols=41  Identities=22%  Similarity=0.124  Sum_probs=37.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~   46 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL   46 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            45899999999999999999999999999999998887654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.50  E-value=9.9e-08  Score=74.24  Aligned_cols=42  Identities=33%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |....+|++|||+|++|+.+|..|++.|++|+|+|+.. +||.
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGt   45 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTT   45 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCH
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCc
Confidence            33346999999999999999999999999999999975 6664

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.49  E-value=8.3e-08  Score=70.75  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCcccCce
Q 033419           32 CDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~g~~~   70 (119)
                      .||+|||+|++|+++|+.|++   .|++|+|+|+.+..|+..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~   43 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRM   43 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGG
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccce
Confidence            489999999999999999999   999999999998888753

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.49  E-value=2.3e-07  Score=70.69  Aligned_cols=38  Identities=32%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g   67 (119)
                      .++||+|||+|++|+++|+.|+++| .+|+|+|+...++
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC
Confidence            5789999999999999999999999 9999999943333

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.49  E-value=1.4e-07  Score=71.35  Aligned_cols=42  Identities=29%  Similarity=0.534  Sum_probs=38.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      .+|++|||+|++|+.+|+.|++.|++|+|+|+++.+||..++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            478999999999999999999999999999999999987544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.48  E-value=1.5e-07  Score=70.85  Aligned_cols=38  Identities=32%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+.+..+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   62 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDRE   62 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence            56899999999999999999999999999999986543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.48  E-value=1.7e-07  Score=74.15  Aligned_cols=40  Identities=40%  Similarity=0.481  Sum_probs=37.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+.+..+++
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~  164 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN  164 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999999887765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.47  E-value=1.8e-07  Score=68.28  Aligned_cols=40  Identities=33%  Similarity=0.392  Sum_probs=35.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+++|+. .+|+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~   45 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQ   45 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcc
Confidence            35689999999999999999999999999999998 45554

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.47  E-value=1.3e-07  Score=73.02  Aligned_cols=41  Identities=34%  Similarity=0.384  Sum_probs=37.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~   43 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT   43 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCc
Confidence            45789999999999999999999999999999997777764

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.47  E-value=1.6e-07  Score=72.53  Aligned_cols=42  Identities=40%  Similarity=0.412  Sum_probs=38.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ..+||+|||+|++|+.+|+.|++.|++|+|+|+.+.+||...
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            467999999999999999999999999999999998888643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.46  E-value=1.4e-07  Score=73.01  Aligned_cols=42  Identities=33%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |+.++|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~   44 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV   44 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence            455799999999999999999999999999999997777754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.46  E-value=1.6e-07  Score=70.36  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||+|||+|++|+++|+.|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.45  E-value=1.7e-07  Score=74.55  Aligned_cols=39  Identities=36%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc------CCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA------GQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~------g~~v~v~e~~~~~g~   68 (119)
                      ..+||+|||+|++|+++|..|++.      |++|+|+|+...+++
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~   78 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA   78 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCC
Confidence            468999999999999999999998      999999999877654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.45  E-value=2.2e-07  Score=65.47  Aligned_cols=36  Identities=31%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +.+||+|||+|++|+.+|..|++.|.+|+++|+...
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~   37 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   37 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            368999999999999999999999999999999843

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.45  E-value=1.9e-07  Score=69.75  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+.+|..|++.|++|+|+|+.+..+
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~   47 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR   47 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            36899999999999999999999999999999987654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.45  E-value=1.6e-07  Score=74.21  Aligned_cols=41  Identities=24%  Similarity=0.420  Sum_probs=37.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|++|+++|+.|++.|++|+|+|+.+..+++
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~  159 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN  159 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            35689999999999999999999999999999999887764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.45  E-value=2.1e-07  Score=72.46  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+.+..
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~   38 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLA   38 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            3689999999999999999999999999999998643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.44  E-value=2e-07  Score=71.36  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+|++|+++|..|++.|+  +|+|+|+.+.+||.+
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~   47 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   47 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCee
Confidence            46899999999999999999999999  999999998777653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.44  E-value=1.8e-07  Score=74.22  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            568999999999999999999999999999999865443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.43  E-value=2.3e-07  Score=72.49  Aligned_cols=40  Identities=30%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ++..+||+|||+|++|+++|..|++.|++|+|+|+.+...
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            3467899999999999999999999999999999986554

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.43  E-value=2.3e-07  Score=74.13  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +..+||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCC
Confidence            34799999999999999999999999999999998543

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.43  E-value=1.7e-07  Score=70.10  Aligned_cols=40  Identities=38%  Similarity=0.397  Sum_probs=36.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+.+|+.|++.  |++|+|+|+.+..|+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg  105 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence            457999999999999999999998  9999999998887754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.43  E-value=1.9e-07  Score=70.67  Aligned_cols=38  Identities=26%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|+.|+++  |++|+|+|+....+
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            468999999999999999999999  99999999975443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.43  E-value=2.1e-07  Score=69.23  Aligned_cols=35  Identities=34%  Similarity=0.464  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+|+|||+||+|+++|..|+++|++|+|+|+.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            36999999999999999999999999999997654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.43  E-value=1.6e-07  Score=73.33  Aligned_cols=36  Identities=28%  Similarity=0.595  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+||+|||+|++|+++|+.|+++|++|+|+|+.+
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            356899999999999999999999999999999986

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.42  E-value=2.9e-07  Score=70.76  Aligned_cols=42  Identities=40%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      +..+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~   45 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   45 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccc
Confidence            346899999999999999999999999999999998777753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.41  E-value=2.9e-07  Score=65.76  Aligned_cols=35  Identities=31%  Similarity=0.545  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+|++|||+|++|+.+|..|++.|++|+++|+...
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            37999999999999999999999999999998754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.41  E-value=2.6e-07  Score=73.37  Aligned_cols=38  Identities=34%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+.+...
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            56899999999999999999999999999999986543

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.41  E-value=2.8e-07  Score=74.55  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|.+|+++|+.+++.|++|+|+|+....++.
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~   43 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            45789999999999999999999999999999998765443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.41  E-value=2.3e-07  Score=71.40  Aligned_cols=39  Identities=36%  Similarity=0.482  Sum_probs=36.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~   40 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGT   40 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCc
Confidence            579999999999999999999999999999999877765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.40  E-value=3.2e-07  Score=71.86  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=33.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+|+|+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            357999999999999999999999999999999854

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.39  E-value=7.9e-07  Score=68.87  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+++|+.|++.|++|+|+|+.+.+||.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~  160 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL  160 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCe
Confidence            4679999999999999999999999999999998877653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.39  E-value=2.3e-07  Score=66.76  Aligned_cols=39  Identities=33%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEE-EecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVV-IEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v-~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+.+|..|++.|++|++ +|+ ..+||.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~   42 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQ   42 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCce
Confidence            457999999999999999999999999999 999 555654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.39  E-value=5.4e-07  Score=66.49  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=32.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcC------CcEEEEecCCcccC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG------QKVVVIEKGNYFTP   68 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g------~~v~v~e~~~~~g~   68 (119)
                      ||+|||+|++|+++|+.|+++|      ++|+|+|+....++
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            8999999999999999999998      89999999875433

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.39  E-value=3.4e-07  Score=72.95  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|++|+++|+.+++.|++|+|+||....+++
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            34689999999999999999999999999999998776543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.39  E-value=2.2e-07  Score=71.03  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +..||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45799999999999999999999999999999876

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.39  E-value=3e-07  Score=70.79  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=35.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +..+|++|||+|++|+.+|..|++.|++|+|+|++ .+||.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~   41 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGT   41 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcc
Confidence            35689999999999999999999999999999998 56654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.38  E-value=3.7e-07  Score=71.79  Aligned_cols=42  Identities=31%  Similarity=0.303  Sum_probs=38.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+.+|..|++.|++++|+|+++.+||.+
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w   55 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   55 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            346899999999999999999999999999999998888754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.38  E-value=3e-07  Score=73.81  Aligned_cols=40  Identities=45%  Similarity=0.502  Sum_probs=35.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+|+|+.+..++
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            3579999999999999999999999999999999887765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.37  E-value=2.9e-07  Score=67.11  Aligned_cols=34  Identities=32%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ...+|++|||+|++|+.+|+.|++.|++|+++|+
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            3468999999999999999999999999999998

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.37  E-value=5.5e-07  Score=69.24  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=37.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~   71 (119)
                      ..+|++|||+|++|+.+|+.|++.|+ +|+|+|+.+.+||..+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~   45 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   45 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCcee
Confidence            46799999999999999999999999 8999999998888644

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.37  E-value=3e-07  Score=67.87  Aligned_cols=38  Identities=32%  Similarity=0.498  Sum_probs=34.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~   69 (119)
                      .+|++|||+|++|+.+|..|++.|+ +|+|+|+.+ +|+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~   42 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHS   42 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCc
Confidence            5899999999999999999999999 999999987 5553

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.37  E-value=3.2e-07  Score=70.43  Aligned_cols=39  Identities=38%  Similarity=0.497  Sum_probs=35.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~   39 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGT   39 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence            379999999999999999999999999999999777765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.37  E-value=3.5e-07  Score=70.60  Aligned_cols=41  Identities=24%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +...+|++|||+|++|+.+|..|++.|++|+|+|+. .+||.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~   57 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGT   57 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence            345799999999999999999999999999999976 45554

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.37  E-value=3.5e-07  Score=70.91  Aligned_cols=34  Identities=32%  Similarity=0.538  Sum_probs=32.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ..+||++|||+|++|+.+|..+++.|++|+|+|+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk   37 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADY   37 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEe
Confidence            3569999999999999999999999999999997

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.36  E-value=3.9e-07  Score=71.81  Aligned_cols=38  Identities=32%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+.+..+
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~   62 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI   62 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            46899999999999999999999999999999987554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.36  E-value=4.5e-07  Score=71.08  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~   65 (119)
                      ..+||+|||||++|+++|+.|++   .|++|+|+|+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            46899999999999999999999   9999999999653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.36  E-value=3.7e-07  Score=73.37  Aligned_cols=42  Identities=29%  Similarity=0.250  Sum_probs=37.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +...+||+|||+|++|+.+|+.+++.|++|+|+|+....+++
T Consensus        15 ~~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           15 VDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            356789999999999999999999999999999998765543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.36  E-value=3.4e-07  Score=70.65  Aligned_cols=40  Identities=28%  Similarity=0.444  Sum_probs=35.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+|+|+. .+||.
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~   41 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGT   41 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHH
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCc
Confidence            34689999999999999999999999999999998 45654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.36  E-value=3.6e-07  Score=70.43  Aligned_cols=40  Identities=45%  Similarity=0.558  Sum_probs=36.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|++|||+|++|+.+|..|++.|++|+|+|+.+.+||.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~   44 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGT   44 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCc
Confidence            4689999999999999999999999999999999877765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.35  E-value=3.3e-07  Score=70.46  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=35.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +..+|++|||+|++|+.+|..|++.|++|+|+|+. .+||.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~   41 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGT   41 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCc
Confidence            34689999999999999999999999999999998 45554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.35  E-value=3.7e-07  Score=72.04  Aligned_cols=40  Identities=38%  Similarity=0.573  Sum_probs=34.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+||....+++
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            457899999999999999999999 9999999999876544

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.34  E-value=3.9e-07  Score=72.33  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=34.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ...+||+|||+|++|+.+|+.|++.|++|+|+|+++.+
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV  142 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcc
Confidence            35689999999999999999999999999999998755

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.34  E-value=5.5e-07  Score=71.97  Aligned_cols=40  Identities=33%  Similarity=0.400  Sum_probs=35.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~   68 (119)
                      ...+||+|||+|++|+++|+.|++.|  ++|+|+|+....++
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~   44 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence            45689999999999999999999999  99999999876544

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.33  E-value=4.6e-07  Score=71.68  Aligned_cols=42  Identities=29%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+.+|..|++.|++|+|+|+++.+||..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw   60 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVW   60 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            457899999999999999999999999999999998888754

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.33  E-value=5.8e-07  Score=70.15  Aligned_cols=40  Identities=35%  Similarity=0.422  Sum_probs=36.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      ...+||+|||||++|+.+|..|++.|++|+|+|+.+.+++
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~  129 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR  129 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC
Confidence            3568999999999999999999999999999999877654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.32  E-value=4.2e-07  Score=70.77  Aligned_cols=34  Identities=32%  Similarity=0.541  Sum_probs=31.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHH-cCCcEEEEe
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIE   61 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e   61 (119)
                      |...+|++|||+|++|+.+|..|++ .|++|+|+|
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            4457999999999999999999999 999999999

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.31  E-value=3.9e-07  Score=70.78  Aligned_cols=36  Identities=42%  Similarity=0.745  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~   65 (119)
                      .+||++|||+|.+|+.+|.+|++ .+++|+|+|++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            47999999999999999999997 7899999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.31  E-value=4.6e-07  Score=65.65  Aligned_cols=39  Identities=28%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|++|||+|++|+++|..|++.|++|+++|+. ..|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~   42 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQ   42 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCce
Confidence            4689999999999999999999999999999965 34443

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.31  E-value=7.6e-07  Score=73.22  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=33.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~   66 (119)
                      .++||+|||+|++|+++|+.|+++|+ +|+|+|+....
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            46899999999999999999999998 99999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.31  E-value=6e-07  Score=72.53  Aligned_cols=42  Identities=31%  Similarity=0.402  Sum_probs=38.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+++|+.|+++|++|+|+|+.+.+|+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~  430 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV  430 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEe
Confidence            456899999999999999999999999999999998877653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.30  E-value=6.5e-07  Score=70.75  Aligned_cols=42  Identities=31%  Similarity=0.366  Sum_probs=38.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+.+|..|++.|++++|+|+++.+||.+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw   48 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTW   48 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence            346899999999999999999999999999999998888764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.30  E-value=6e-07  Score=70.89  Aligned_cols=41  Identities=27%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             ccccEEEECCChHHHHHHHHHH-HcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+|++|+.+|..|+ +.|++|+|+|+++.+||..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw   48 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW   48 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcc
Confidence            4689999999999999999999 8999999999998888754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=5.7e-07  Score=69.62  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=35.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .++|++|||+|++|+.+|..|++.|++|+|+|+. .+||.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~   48 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGT   48 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCc
Confidence            4689999999999999999999999999999997 45654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.28  E-value=2.3e-06  Score=68.98  Aligned_cols=43  Identities=33%  Similarity=0.385  Sum_probs=39.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ...+||+|||+|++|+++|+.|+++|++|+|+|+.+.+||...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~  147 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  147 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            4568999999999999999999999999999999999988644

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.28  E-value=9.3e-07  Score=71.10  Aligned_cols=38  Identities=34%  Similarity=0.488  Sum_probs=34.5

Q ss_pred             ccccccEEEECCChHHHHHHHHHH---H-cCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLA---S-AGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~---~-~g~~v~v~e~~~~   65 (119)
                      ....+||+|||+|++|+++|+.++   + .|.+|+|+||...
T Consensus        19 ~~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           19 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             eeccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            456799999999999999999999   6 8999999999875

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.27  E-value=4.6e-07  Score=71.43  Aligned_cols=38  Identities=39%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +...||++|||+|.+|+.+|.+|++ |.+|+|+|++...
T Consensus        23 ~~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           23 LEGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             ccCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            4467999999999999999999999 9999999998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.27  E-value=5.8e-07  Score=65.94  Aligned_cols=41  Identities=32%  Similarity=0.289  Sum_probs=35.1

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +...+|++|||+|++|+.+|..|++.|++|+++|+. ..|+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~   51 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGA   51 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCG
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence            345789999999999999999999999999999975 34443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.27  E-value=7.2e-07  Score=66.83  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~   66 (119)
                      ||+|||||++|+++|..|++.  |++|+|+|+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            799999999999999999998  9999999998765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.26  E-value=7.4e-07  Score=71.47  Aligned_cols=38  Identities=32%  Similarity=0.382  Sum_probs=34.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|..|++ .|++|+|+|+.+...
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999986543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.26  E-value=8.8e-07  Score=69.76  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHH---cCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~   64 (119)
                      +..+||+|||||++|+++|..|++   .|++|+|+|+..
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            357899999999999999999999   999999999865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.26  E-value=5.1e-07  Score=70.15  Aligned_cols=38  Identities=32%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHc---CCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~~g~~   69 (119)
                      .+|++|||+|++|+++|+.|++.   |++|+|+|+.+ +||.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~   42 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGA   42 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCc
Confidence            47999999999999999999998   99999999987 6664

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.26  E-value=1e-06  Score=59.23  Aligned_cols=34  Identities=47%  Similarity=0.660  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +|++|||+|++|+.+|..|++.|.+|+++|+.+.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            6899999999999999999999999999998863

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.26  E-value=6.7e-07  Score=68.37  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC-----CcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG-----QKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g-----~~v~v~e~~~~~g   67 (119)
                      ..+||+|||+|++|+++|..|++.|     ++|+|+|+.+.+|
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            4579999999999999999999999     9999999998776

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.25  E-value=9.2e-07  Score=68.74  Aligned_cols=31  Identities=39%  Similarity=0.569  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHH-cCCcEEEEe
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIE   61 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e   61 (119)
                      ++|++|||+|++|+.+|+.|++ .|++|+|+|
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            5899999999999999999999 999999999

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.25  E-value=7.1e-07  Score=68.61  Aligned_cols=38  Identities=37%  Similarity=0.552  Sum_probs=34.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|++|||+|++|+.+|..|++.|++|+|+|+. .+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~   40 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGV   40 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCc
Confidence            589999999999999999999999999999998 45543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.25  E-value=9.9e-07  Score=63.71  Aligned_cols=37  Identities=30%  Similarity=0.395  Sum_probs=33.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~   69 (119)
                      +|++|||+|++|+.+|..|++.|+ +|+++|+. ..|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~   39 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQ   39 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcc
Confidence            689999999999999999999999 99999985 44544

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.25  E-value=1e-06  Score=68.18  Aligned_cols=34  Identities=21%  Similarity=0.429  Sum_probs=31.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ..++|++|||+|++|+.+|..|++.|++|+|+|+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3579999999999999999999999999999995

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=9.8e-07  Score=67.67  Aligned_cols=38  Identities=42%  Similarity=0.609  Sum_probs=34.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      .+|++|||+|++|+.+|..|++.|++|+|+|+. .+||.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~   40 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGV   40 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCc
Confidence            589999999999999999999999999999998 55554

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=8.1e-07  Score=68.39  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|++|||+|++|+.+|..+++.|++|+|+|+ ..+||.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~   42 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGT   42 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCc
Confidence            468999999999999999999999999999999 556655

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.24  E-value=9.3e-07  Score=69.16  Aligned_cols=36  Identities=28%  Similarity=0.498  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHH------------cCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS------------AGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~------------~g~~v~v~e~~~~   65 (119)
                      ..+||+|||||++|+.+|..|++            .|++|+|+|+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            46899999999999999999999            8999999998653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.24  E-value=2.7e-06  Score=70.60  Aligned_cols=43  Identities=33%  Similarity=0.385  Sum_probs=38.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ....+|+|||+|++|+++|+.|+++|++|+|+|+.+.+||...
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~  318 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  318 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence            3467999999999999999999999999999999999988643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.24  E-value=1.1e-06  Score=67.92  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=35.9

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCc---EEEEecCCcccCce
Q 033419           32 CDVVIVGSGCGGGVAAAVLAS---AGQK---VVVIEKGNYFTPKD   70 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~---~g~~---v~v~e~~~~~g~~~   70 (119)
                      .||+|||+|++|+.+|..|++   .|++   |+|+|+.+.+||.+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w   47 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQW   47 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGG
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEe
Confidence            589999999999999999999   9999   99999998888754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.24  E-value=1.1e-06  Score=68.45  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=34.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|++|||+|++|+.+|..|++.|++|+|+|+.. +||.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~   39 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGT   39 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCcc
Confidence            5899999999999999999999999999999985 5554

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.20  E-value=8.1e-07  Score=68.94  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~   65 (119)
                      .+||+|||||++|+++|+.|++   .|++|+|+|+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            4699999999999999999999   9999999999753

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.20  E-value=1.2e-06  Score=70.77  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=33.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+...+||+|||+|++|+.+|+.+++.|.+|+|+|+..
T Consensus        17 ~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           17 RGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            34567999999999999999999999999999999874

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.20  E-value=1.4e-06  Score=70.53  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc------CCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA------GQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~------g~~v~v~e~~~~~g   67 (119)
                      ...+||+|||+|++|+++|+.+++.      |++|+|+||....+
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~   64 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER   64 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC
Confidence            3579999999999999999999987      99999999986544

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.19  E-value=1.6e-06  Score=67.18  Aligned_cols=36  Identities=36%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ||+|||+|++|+.+|+.|++.|++|+|+|+. ..+++
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            7999999999999999999999999999998 44443

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.19  E-value=2.1e-06  Score=69.43  Aligned_cols=46  Identities=24%  Similarity=0.453  Sum_probs=41.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      +.++||++|+|+|..|...|..|++.|.+|+++|+++++||+.+..
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~   50 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   50 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccc
Confidence            3458999999999999999999999999999999999999986643

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.19  E-value=1.4e-06  Score=70.32  Aligned_cols=36  Identities=44%  Similarity=0.627  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-----cCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-----AGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-----~g~~v~v~e~~~~   65 (119)
                      ..+||+|||+|++|+++|..|++     .|++|+|+|+.+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            46899999999999999999999     9999999998754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.19  E-value=1.4e-06  Score=70.46  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+||+|||||++|+.+|+.+++.|.+|+|+|+..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            46999999999999999999999999999999874

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.18  E-value=1.4e-06  Score=68.46  Aligned_cols=37  Identities=43%  Similarity=0.689  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+|++|||+|++|+.+|.+|++.|++|+|+|++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3569999999999999999999999999999999863

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.18  E-value=1.7e-06  Score=69.83  Aligned_cols=35  Identities=31%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+||+|||||++|+.+|+.+++.|++|+|+|+..
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46999999999999999999999999999999974

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.18  E-value=1.9e-06  Score=70.16  Aligned_cols=41  Identities=32%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+|++|+.+|..|++.|++|+|+|+.+.+||..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~  428 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL  428 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCee
Confidence            46799999999999999999999999999999998877753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.18  E-value=1.4e-06  Score=67.17  Aligned_cols=38  Identities=34%  Similarity=0.522  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|++|||+|++|+.+|..|++.|++|+|+|+.+ +||.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~   43 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGV   43 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCC
Confidence            6899999999999999999999999999999987 5554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.16  E-value=5.8e-06  Score=69.67  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+++|..|++.|+ +|+|+|+.+.+||.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc
Confidence            46899999999999999999999999 79999998777653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.16  E-value=2e-06  Score=68.22  Aligned_cols=40  Identities=40%  Similarity=0.469  Sum_probs=36.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+||+|||+|++|+.+|+.|++.|++|+|+|+.+..++.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~  164 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN  164 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            4689999999999999999999999999999999887765

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.16  E-value=1.6e-06  Score=62.51  Aligned_cols=33  Identities=36%  Similarity=0.474  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ++|++|||+|++|+.+|..|++.|++|+++|+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~   33 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            379999999999999999999999999999853

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.16  E-value=1.1e-06  Score=68.33  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+|++|||+|++|+++|+.|++. ++|+|+|+++.+|+..
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~  146 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDM  146 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSG
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCee
Confidence            3568999999999999999999999 9999999998877653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.15  E-value=2.4e-06  Score=68.74  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|++|||+|++|+.+|..|++.|++|+|+|+.+.+|+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~  411 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ  411 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCe
Confidence            4679999999999999999999999999999999887765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.15  E-value=1.7e-06  Score=68.59  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .||++|||+|++|+.+|.++++.|.+|+|+|+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            5899999999999999999999999999999754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.14  E-value=1.8e-06  Score=72.30  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      ..+|++|||+|++|+.+|..+++.|++|+|+|+.+.+||...
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999988876644

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.11  E-value=3.4e-06  Score=63.91  Aligned_cols=39  Identities=41%  Similarity=0.582  Sum_probs=34.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCc--EEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQK--VVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~--v~v~e~~~~~g   67 (119)
                      ...+|++|||+|++|+++|..|++.|++  |+++|+.+..+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~   47 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIP   47 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCC
Confidence            3468999999999999999999999987  99999987543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.09  E-value=2.8e-06  Score=65.10  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      .|++|||+|++|+++|..|++.  |.+|+|+|+.+.++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5899999999999999999998  89999999998766

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.08  E-value=2.4e-06  Score=68.14  Aligned_cols=37  Identities=35%  Similarity=0.468  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~   65 (119)
                      ...||++|||+|.+|+.+|.+|++.+ .+|+|+|++..
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            45799999999999999999999987 79999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.05  E-value=4e-06  Score=64.16  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~   68 (119)
                      .+|++|||+|++|+.+|+.|++.  +++|+++|+.+.++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~   42 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSH   42 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcccc
Confidence            46899999999999999999987  889999999886543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.04  E-value=5e-06  Score=63.57  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~   65 (119)
                      +.+|++|||+|++|+.+|..|++.|+  +|+++|+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            46899999999999999999999998  7999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.04  E-value=3.2e-06  Score=65.08  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      ..||+|||+|++|+++|..|++.  |++|+|+|+.+.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            35899999999999999999998  89999999988754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.03  E-value=7.5e-06  Score=63.21  Aligned_cols=37  Identities=30%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +||+|||+|++|+.+|+.++++|++|+++|+.+..+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~t   38 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMT   38 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCC
Confidence            5899999999999999999999999999998875443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.02  E-value=5.1e-06  Score=62.30  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..+|++|||+|++|+.+|..|++.|.  +|+++|++.
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            46899999999999999999999984  689999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.02  E-value=4.1e-06  Score=64.79  Aligned_cols=39  Identities=31%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             cccEEEECCChHHHHHHHHHHH-c------CCcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS-A------GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~-~------g~~v~v~e~~~~~g~~   69 (119)
                      .+|++|||+|++|+.+|..|.+ .      |++|+|+|+.+.+++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~   48 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   48 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCc
Confidence            5789999999999999999998 7      9999999998776653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.02  E-value=4.4e-06  Score=66.23  Aligned_cols=34  Identities=32%  Similarity=0.560  Sum_probs=31.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ...+|++|||+|++|+.+|..|++.|++|+|+|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            3468999999999999999999999999999997

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.01  E-value=5.4e-06  Score=63.48  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      +|++|||+|++|+.+|..|++.  |.+|+|+|+.+..+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            4899999999999999999998  99999999987543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.01  E-value=4e-06  Score=66.94  Aligned_cols=36  Identities=36%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~   64 (119)
                      ...||++|||+|.+|+.+|.+|++ .+.+|+|+|++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            457999999999999999999997 589999999987

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.97  E-value=6.3e-06  Score=64.58  Aligned_cols=39  Identities=33%  Similarity=0.449  Sum_probs=33.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...+|++|||+|++|+++|..|++.|++|+++|+.  +||.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~  248 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQ  248 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGG
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCc
Confidence            35789999999999999999999999999999863  4444

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.97  E-value=6.9e-06  Score=63.87  Aligned_cols=39  Identities=15%  Similarity=0.349  Sum_probs=33.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      ...+|++|||+|++|+.+|..|++.  +.+|+|+|+.+.++
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4568999999999999999998876  88999999987543

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.96  E-value=7.2e-06  Score=64.81  Aligned_cols=38  Identities=29%  Similarity=0.571  Sum_probs=33.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      ...||+|||+|++|+++|..|++.  |++|+|+|+.+.++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            356899999999999999999998  89999999988643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.96  E-value=5.9e-06  Score=62.30  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             cEEEECCChHHHHHHHHHHH---cCCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~g   67 (119)
                      ||+|||+|++|+.+|..|++   .|++|+|+|+.+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~   40 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSY   40 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCce
Confidence            79999999999999999999   899999999987543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.96  E-value=3.8e-06  Score=66.87  Aligned_cols=36  Identities=39%  Similarity=0.518  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~~   66 (119)
                      .||++|||+|.+|+.+|.+|++ .+++|+|+|++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999998 79999999998754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.95  E-value=6.3e-06  Score=63.90  Aligned_cols=37  Identities=16%  Similarity=0.388  Sum_probs=33.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC---CcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~~~g   67 (119)
                      .+|++|||+|++|+.+|..|++.|   .+|+|+|+.+..+
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~   74 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNIS   74 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence            589999999999999999999987   9999999987543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.95  E-value=9.2e-06  Score=64.71  Aligned_cols=38  Identities=42%  Similarity=0.489  Sum_probs=34.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~~   66 (119)
                      ...+|++|||+|++|+.+|.+|++ .|++|+++|++...
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            467999999999999999999999 89999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.95  E-value=1e-05  Score=61.35  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~g   67 (119)
                      ..+|++|||+|++|+.+|..|++.|.  +|+++|+.+.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            46899999999999999999999998  599999987543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=8.5e-06  Score=63.05  Aligned_cols=39  Identities=26%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~   68 (119)
                      ..+|++|||+|++|+.+|..|++.|  ++|+|+|+.+.+++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg   45 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   45 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCc
Confidence            3579999999999999999999988  99999999887664

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.94  E-value=9.4e-06  Score=63.34  Aligned_cols=38  Identities=29%  Similarity=0.539  Sum_probs=34.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+|++|||+|++|+.+|.+|++.|++|+++|++....
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            46899999999999999999999999999999987544

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.94  E-value=1.2e-05  Score=60.69  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~   66 (119)
                      .|++|||+|++|+++|..|++.|+  +|+|+|+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            479999999999999999999999  89999998743

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.93  E-value=9.4e-06  Score=62.07  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      |++|||+|++|+.+|..|++.  |.+|+|+|+.+..+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            799999999999999999987  99999999987654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.91  E-value=1.2e-05  Score=62.81  Aligned_cols=37  Identities=35%  Similarity=0.559  Sum_probs=34.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+|++|||+|++|+.+|.+|++.|++|+++|++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4579999999999999999999999999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.88  E-value=1.6e-05  Score=60.18  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc--EEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK--VVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~--v~v~e~~~~~g   67 (119)
                      .+++|||+|++|+.+|..|++.|++  |+++|+.+..+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC
Confidence            3899999999999999999999987  99999987644

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.88  E-value=1e-05  Score=61.77  Aligned_cols=36  Identities=39%  Similarity=0.696  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~   66 (119)
                      ..|++|||||++|+.+|..|++   .|++|+|+|+.+.+
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            3689999999999999999999   89999999998754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.87  E-value=1.1e-05  Score=63.64  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=34.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYF   66 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~   66 (119)
                      ...+|++|||+|.+|+.+|.+|++. |.+|+++|++...
T Consensus        11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            3579999999999999999999997 8999999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.87  E-value=1.3e-05  Score=62.02  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      .|++|||+|++|+.+|..|++.  |.+|+|+|+.+..+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            5999999999999999999986  89999999987653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=1.1e-05  Score=60.38  Aligned_cols=35  Identities=40%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..|++|||+|++|+.+|..|++.| +|+|+|+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            368999999999999999999999 99999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.84  E-value=1.4e-05  Score=62.57  Aligned_cols=36  Identities=28%  Similarity=0.561  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g   67 (119)
                      .||+|||+|++|+++|..|++.  +.+|+|+|+.+.++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            3799999999999999999988  88999999987654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.82  E-value=1.1e-05  Score=65.95  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=33.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC--------CcEEEEecCC-cc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG--------QKVVVIEKGN-YF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g--------~~v~v~e~~~-~~   66 (119)
                      ..+|+|||+|++|+++|+.|.+.|        ++|+|+|+.+ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999988        9999999998 88

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.79  E-value=2.3e-05  Score=59.22  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=34.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .++++|+|||+|++|+.+|..|...+.+++|+|+.+..+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            456889999999999999999977899999999987654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.79  E-value=2.3e-05  Score=60.04  Aligned_cols=36  Identities=22%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g   67 (119)
                      ++|+|||+|++|+.+|..|++.|  .+|+|+|+++...
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            46999999999999999999987  4799999986543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.72  E-value=2.2e-05  Score=61.42  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..++|+|||+|.+|+.+|..|++.+++|+|+|+.+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456899999999999999999999999999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.67  E-value=3.6e-05  Score=57.68  Aligned_cols=33  Identities=39%  Similarity=0.582  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~   65 (119)
                      +|+|||+|++|+++|.+|++.+  .+|+|+|+.+.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            6999999999999999998865  58999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.57  E-value=6.2e-05  Score=57.40  Aligned_cols=33  Identities=33%  Similarity=0.517  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~   65 (119)
                      +|+|||+|++|+.+|..|++.+  ++|+|+|+.+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            6999999999999999999865  78999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.41  E-value=3.8e-05  Score=59.88  Aligned_cols=28  Identities=25%  Similarity=0.143  Sum_probs=23.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQK   56 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~   56 (119)
                      ..-+||+|||+||+||++|..|.+.|..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~   64 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDP   64 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCT
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCC
Confidence            4458999999999999999999876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.03  E-value=0.0011  Score=42.81  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..-.++|+|.|..|...|..|.+.|++|+++|+.+.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            345799999999999999999999999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.74  E-value=0.0024  Score=41.87  Aligned_cols=35  Identities=37%  Similarity=0.601  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++|+|+|..|..++..|.+.|++|+++|+.+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            34699999999999999999999999999998653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.73  E-value=0.0022  Score=48.84  Aligned_cols=37  Identities=41%  Similarity=0.418  Sum_probs=33.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ...+++|||+|++|+.+|..+++.|.+|+++|+.+.+
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            3568999999999999999999999999999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.70  E-value=0.0016  Score=46.87  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            36999999999999999999999999999987643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.67  E-value=0.0023  Score=48.21  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++|+.+.+.
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            3579999999999999999999999999999987653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.0026  Score=40.84  Aligned_cols=33  Identities=27%  Similarity=0.513  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|+|..|...|..|.+.|++|+++|+.+
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            369999999999999999999999999999865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.52  E-value=0.0049  Score=40.20  Aligned_cols=33  Identities=24%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ...++|+|+|..|...+..|.+.|++|+++|+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            346999999999999999999999999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0032  Score=39.79  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +++|+|+|..|...+..|.+.|++|+++|+.+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999999999999764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.48  E-value=0.003  Score=48.38  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            47999999999999999999999999999988654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.43  E-value=0.0035  Score=48.06  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            57999999999999999999999999999987643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.43  E-value=0.0039  Score=47.56  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+++.|.+|+++|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            357999999999999999999999999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.39  E-value=0.0038  Score=47.59  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|++|+.+|..|++.|.+|+++|+.+.+
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            46999999999999999999999999999987653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.34  E-value=0.0046  Score=47.36  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            57999999999999999999999999999987654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.33  E-value=0.0037  Score=46.64  Aligned_cols=35  Identities=37%  Similarity=0.546  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            57999999999999999999999999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.30  E-value=0.0059  Score=45.47  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+++.|.+|+++|+.+.+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            457999999999999999999999999999987654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.29  E-value=0.004  Score=44.50  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|||+|..|+.+|..+++.|.+|+++++..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            469999999999999999999999999999765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.19  E-value=0.0057  Score=40.92  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHc-CCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~   64 (119)
                      .-.++|+|.|..|..+|..|.+. |++|+++|+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            34799999999999999999999 99999999865

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.18  E-value=0.0065  Score=45.81  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            357999999999999999999999999999988654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.13  E-value=0.0063  Score=46.45  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            4799999999999999999999999999998764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.12  E-value=0.0081  Score=37.98  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|..|...+..|.+.|++|+++|+..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.09  E-value=0.0078  Score=36.80  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      ..++|+|+|..|..++..|.+.| ++|.++++.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            36999999999999999999999 8999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.00  E-value=0.0085  Score=46.22  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            356999999999999999999999999999987653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.95  E-value=0.0097  Score=43.11  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|..|...|..+++.|++|+++|+.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999999999999764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.94  E-value=0.0088  Score=45.86  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR  200 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            4799999999999999999999999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.94  E-value=0.0075  Score=46.38  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL  220 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            347999999999999999999999999999987643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.93  E-value=0.009  Score=45.62  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRA  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            47999999999999999999999999999988643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.92  E-value=0.0066  Score=46.73  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|+.|+.+|..+++.|.+|+++|+.+.+
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI  221 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch
Confidence            457999999999999999999999999999987643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.92  E-value=0.0091  Score=45.71  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++|+.+.+
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            47999999999999999999999999999988654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.89  E-value=0.0079  Score=44.66  Aligned_cols=33  Identities=39%  Similarity=0.465  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.|.|||+|.-|...|..++..|++|+++|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.83  E-value=0.0087  Score=41.23  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +++|+|+|..|...|..|.+.|++|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=95.82  E-value=0.0095  Score=43.48  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            37999999999999999999999999999987543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.82  E-value=0.01  Score=45.27  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            47999999999999999999999999999988644

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.79  E-value=0.012  Score=45.49  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            357999999999999999999999999999988754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.76  E-value=0.012  Score=44.77  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            347999999999999999999999999999987643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.75  E-value=0.0081  Score=45.83  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI  212 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence            47999999999999999999999999999987643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.75  E-value=0.014  Score=44.30  Aligned_cols=36  Identities=33%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVL  184 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            379999999999999999999999999999876543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.71  E-value=0.013  Score=44.14  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+.+.|.+|+++++.+.+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            357999999999999999999999999999988654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.70  E-value=0.011  Score=45.67  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..|++.|.+|+++|+.+.
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  210 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR  210 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4699999999999999999999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.013  Score=45.06  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.|.+|+++|+.+.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            4799999999999999999999999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.61  E-value=0.014  Score=41.63  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            357999999999999999999999999999987643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.54  E-value=0.014  Score=41.58  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.+.+|+++++.+.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999987543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.52  E-value=0.016  Score=44.07  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV  184 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch
Confidence            347999999999999999999999999999987643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.51  E-value=0.016  Score=44.25  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  210 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTL  210 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            4699999999999999999999999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.50  E-value=0.016  Score=41.65  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.+.|||+|..|...|..+++.|++|+++|+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.48  E-value=0.017  Score=44.12  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC  209 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc
Confidence            47999999999999999999999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.47  E-value=0.018  Score=44.84  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            37999999999999999999999999999987654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.42  E-value=0.019  Score=42.00  Aligned_cols=33  Identities=27%  Similarity=0.592  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..|++.|.+|+++++.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            369999999999999999999999999999865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.36  E-value=0.016  Score=41.65  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            347999999999999999999999999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.34  E-value=0.023  Score=42.72  Aligned_cols=36  Identities=33%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+.+.|.+|+++++.+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            457999999999999999999999999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.33  E-value=0.018  Score=44.33  Aligned_cols=35  Identities=31%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            46999999999999999999999999999987644

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.31  E-value=0.02  Score=41.73  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..|++.|.+|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            369999999999999999999999999999865

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.28  E-value=0.023  Score=44.84  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999986

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.25  E-value=0.023  Score=40.26  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++.|||+|..|...|..|.+.|++|+++++...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            489999999999999999999999999988653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.25  E-value=0.019  Score=41.27  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            47999999999999999999999999999987643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.25  E-value=0.019  Score=44.04  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|||.|.+|+++|..|.++|++|++.|...
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            469999999999999999999999999999854

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.22  E-value=0.02  Score=40.92  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            347999999999999999999999999999987643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.21  E-value=0.023  Score=43.47  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            4799999999999999999999999999998654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.21  E-value=0.024  Score=41.49  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++.|||+|..|...|..+++.|+ +|+++|...
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3469999999999999999999998 999998764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.20  E-value=0.02  Score=45.09  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+|+|||+|..|+.+|..|++.+.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999998875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.20  E-value=0.027  Score=44.51  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +-+++|||+|..|+..|..+++.|.+|+++++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            35799999999999999999999999999987653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.20  E-value=0.021  Score=41.42  Aligned_cols=36  Identities=19%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|..|+..|..|++.|.+|+++++.+.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            357999999999999999999999999999987643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.19  E-value=0.033  Score=38.45  Aligned_cols=33  Identities=36%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...+..|.+.|++|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.19  E-value=0.025  Score=42.39  Aligned_cols=35  Identities=31%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+.+.|.+|+++++.+.+
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            46999999999999999999999999999987654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.16  E-value=0.025  Score=43.29  Aligned_cols=35  Identities=29%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            46999999999999999999999999999987643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.16  E-value=0.024  Score=43.53  Aligned_cols=34  Identities=18%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            4699999999999999999999999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.15  E-value=0.023  Score=43.15  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      .-+|+|||+|..|+-+|..|++.+.+ |+++++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            35799999999999999999999998 99998865

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.14  E-value=0.017  Score=44.15  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .++|||.|.+|+++|..|.++|++|++.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            6999999999999999999999999999987543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.11  E-value=0.019  Score=45.15  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            35799999999999999999999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.10  E-value=0.021  Score=44.95  Aligned_cols=35  Identities=17%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+|+|||+|.+|+.+|..|++.+.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45799999999999999999999999999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.09  E-value=0.029  Score=42.66  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL  182 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            346999999999999999999999999999987654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.09  E-value=0.027  Score=43.00  Aligned_cols=33  Identities=33%  Similarity=0.521  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|+|+|.|..|..++..|.+.|++|+++|+.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.05  E-value=0.027  Score=43.62  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+++.   |.+|+++++.+.
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            4799999999999999999998   999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.03  E-value=0.034  Score=43.42  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHHc-CC-cEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA-GQ-KVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~-g~-~v~v~e~~~~   65 (119)
                      ++.|||.|..|+..|..|+++ |+ +|+++|+.+.
T Consensus        20 kIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            699999999999999999999 99 9999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.01  E-value=0.032  Score=42.64  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            46999999999999999999999999999987643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.01  E-value=0.02  Score=41.25  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            357999999999999999999999999999987643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.98  E-value=0.026  Score=40.43  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            356999999999999999999999999999987643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.97  E-value=0.033  Score=41.17  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      |+....++.|+|+|..|..+|+.++..|+ .+.++|..
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            33445679999999999999999999999 99999987

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.97  E-value=0.029  Score=43.32  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHc---CCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..+.+.   |.+|+++|+.+.
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            4799999999999999999998   999999998764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.95  E-value=0.022  Score=43.14  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~   66 (119)
                      ..+|+|||+|..|+.+|..|.+.  +.+|+++++.+.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999998  8899999988754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.94  E-value=0.032  Score=41.29  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++.|||+|..|..+|..|+..|+ +|.++|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3579999999999999999999998 999998765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.90  E-value=0.035  Score=39.17  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..-.++|||+|..|...+..|.+.|.+|+|+++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3457999999999999999999999999999865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.88  E-value=0.032  Score=39.93  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|.+.|++|+++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            59999999999999999999999999998754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.88  E-value=0.034  Score=40.87  Aligned_cols=32  Identities=41%  Similarity=0.667  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++.|||+|..|...|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            36999999999999999999999999999974

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.87  E-value=0.038  Score=38.00  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++.|||+|..|...|..|.+.|++|+++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3699999999999999999999999999987653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.86  E-value=0.034  Score=40.72  Aligned_cols=33  Identities=33%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..|++.|++|+++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999998753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.83  E-value=0.027  Score=40.39  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+..|..|++.|.+|+++++.+.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            4699999999999999999999999999987653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.83  E-value=0.036  Score=40.24  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+++|||+|..|...|..|++.|+  +|+++|+..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            469999999999999999999998  999998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.83  E-value=0.033  Score=41.70  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++.|||+|..|...|..|+++|++|.++++.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4579999999999999999999999999998864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.82  E-value=0.034  Score=40.14  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..|.+.|.+|+++++..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            369999999999999999999999999998874

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=94.80  E-value=0.041  Score=42.32  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            469999999999999999999999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.76  E-value=0.04  Score=43.32  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            47999999999999999999999999999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.75  E-value=0.041  Score=42.41  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+..|..+.+.|.+|+++|+.+.+
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            357999999999999999999999999999987643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.74  E-value=0.039  Score=42.26  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....|+|+|+|.+|+.+|..+...|.+|+++|+..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34679999999999999999999999999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=94.73  E-value=0.05  Score=42.33  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999975

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.71  E-value=0.081  Score=37.82  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            5999999999999999999999999999876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.68  E-value=0.015  Score=45.05  Aligned_cols=32  Identities=25%  Similarity=0.575  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +++|+|+|..|...|..|...|++|+++|+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            59999999999999999999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.68  E-value=0.038  Score=42.98  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            57999999999999999999999999999987643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.67  E-value=0.036  Score=39.36  Aligned_cols=61  Identities=25%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             CchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419            3 ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +++.++.+-.++..++--.. .....-...+|+|+|+|-.|..+|..|++.|. +++++|+..
T Consensus         4 l~~~e~~ry~Rq~~l~~~g~-~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B            4 LSDQEMLRYNRQIILRGFDF-DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CCHHHHHHTHHHHTSTTTHH-HHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCHHHHHHhhheecccccCH-HHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            56666655444443311100 01112245689999999999999999999998 799999765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.62  E-value=0.039  Score=42.90  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +.++.|||.|..|+..|..|++.|++|+++|+..
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3479999999999999999999999999998753

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.60  E-value=0.026  Score=41.04  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .-.|+|||+|..|...+..|.+.|.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3469999999999999999999999999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=94.55  E-value=0.03  Score=40.89  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..|.+.+.+|+++++.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            47999999999999999999999999999987643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.51  E-value=0.043  Score=38.89  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|+|+|..|+.+|..|.+.|.+|+++++.+.+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            357999999999999999999999999999987654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.50  E-value=0.053  Score=40.00  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|..++..|+ ++.++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            469999999999999999999998 999998654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.48  E-value=0.039  Score=39.86  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..++.|||.|..|...|..|.+.|++|+++|+.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999998754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.46  E-value=0.061  Score=38.90  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             cccccCCccccccccccEEEECC-ChHHHHHHHHHHHcCCcEEEEecC
Q 033419           17 LQVTKDSKQNVYKIKCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ++....+........-.++|.|+ |..|..++..|.+.|++|+++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~   53 (330)
T 2pzm_A            6 HHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNF   53 (330)
T ss_dssp             --------CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cccccccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            33333333333333446999998 889999999999999999999874

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.45  E-value=0.049  Score=39.91  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.++.|||+|..|...|..|.+.|++|+++++..
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35689999999999999999999999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.45  E-value=0.037  Score=43.12  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            347999999999999999999999999999987543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.43  E-value=0.049  Score=42.09  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +.++.|||.|..|+..|..|+++|++|+++|+.+.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46799999999999999999999999999998753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.41  E-value=0.032  Score=40.14  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-----C-CcEEEEec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA-----G-QKVVVIEK   62 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~-----g-~~v~v~e~   62 (119)
                      .++.|||+|..|...|..|.+.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3699999999999999999998     9 99999987

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.36  E-value=0.072  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++.|||+|..|...|..|.+.|++|+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.34  E-value=0.046  Score=41.57  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....++|+|+|.+|..+|..+...|.+|+++|+..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999999999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=94.32  E-value=0.048  Score=41.65  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~   66 (119)
                      -+++|||+|..|+.+|..+++. |.+|+++++.+.+
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            4799999999999999999999 9999999987654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.29  E-value=0.045  Score=40.04  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+..|.|||.|.-|...|..++ .|++|+++|+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            3567999999999999999999 999999999865

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.29  E-value=0.038  Score=42.68  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|..|...|..++++|++|+++|+.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.28  E-value=0.042  Score=42.40  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..|+++|++|+++|+.+
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            69999999999999999999999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=94.22  E-value=0.053  Score=38.37  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|..|+.+|..+.+.+.+|+++++.+.+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            357999999999999999999999999999887643

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.19  E-value=0.058  Score=39.85  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|..++..|+ +|.++|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.18  E-value=0.058  Score=41.26  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ...+|+|+|+|.+|..+|..+...|. +++++|+.-
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45689999999999999999998999 899999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.18  E-value=0.054  Score=41.20  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...|+|+|+|.+|+.++..+...|.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4579999999999999999999999999999764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.17  E-value=0.053  Score=39.19  Aligned_cols=33  Identities=30%  Similarity=0.162  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.+.|++|+++|+.+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.15  E-value=0.059  Score=39.31  Aligned_cols=32  Identities=31%  Similarity=0.555  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      +++|||+|..|...|..++.+|+  .+.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999998  899998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.13  E-value=0.047  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..|.|||+|.-|...|..++++|++|+++|+.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4699999999999999999999999999998754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=94.11  E-value=0.068  Score=40.96  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+++|||+|..|+..|..+++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            469999999999999999999999999998753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.08  E-value=0.068  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..+++|||+|..|...|+.+...++  .+.++|...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999888  799998654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.08  E-value=0.062  Score=40.44  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....++|+|+|.+|+.++..+...|.+|+++|+..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999999999999764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.08  E-value=0.065  Score=39.37  Aligned_cols=32  Identities=25%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHH-HHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGV-AAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~-~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.+||.|.+|++ +|..|.++|++|++.|...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            6899999999996 7888899999999999865

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.06  E-value=0.064  Score=38.39  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++.|||.|..|...|..|.+.|++|+++++.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999998753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.03  E-value=0.069  Score=41.07  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~   65 (119)
                      .-+|+|||+|.+|+-+|..+.+.|. +|+++++...
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            3479999999999999999999888 5999988754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.98  E-value=0.078  Score=38.54  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++.|||.|..|...|..|.+.|++|+++|+.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.97  E-value=0.07  Score=39.82  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++|+|+|.+|..++..+...|.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57999999999999999999999999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=93.95  E-value=0.071  Score=40.64  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            34799999999999999999999999999998764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.95  E-value=0.056  Score=39.17  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ++.|||+|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.95  E-value=0.072  Score=37.41  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++.|||.|..|...|..|.+.|++|++.++.+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            345799999999999999999999999999987654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.92  E-value=0.072  Score=40.88  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  225 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL  225 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc
Confidence            35799999999999999999999999999998764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.90  E-value=0.11  Score=37.09  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|-+|..++..|.+.|.+|+++++..
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998863

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.87  E-value=0.081  Score=38.96  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++|+|+|..|..+++.+.+.|++++++|..+.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            489999999999999999999999999997654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.87  E-value=0.053  Score=37.49  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEE-EecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVV-IEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v-~e~~~   64 (119)
                      ..++.|||+|..|...|..|.+.|++|++ +++..
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            35799999999999999999999999998 77654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.87  E-value=0.072  Score=39.52  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..++.|||+|..|.++|+.|...|+  .+.++|...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4579999999999999999999888  799998753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.86  E-value=0.049  Score=41.60  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..|++.|++|+++|+.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999998753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.85  E-value=0.09  Score=38.16  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++.|||.|..|...|..|.+.|++|+++|+.+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.84  E-value=0.063  Score=38.41  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++.|||.|..|...|..|.+.|++|+++++.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.83  E-value=0.072  Score=41.52  Aligned_cols=33  Identities=33%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|...|..++++|++|+++|+.+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            369999999999999999999999999999775

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.80  E-value=0.16  Score=36.40  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|||+|..|...+..|.+.|.+++++++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            369999999999999999999999999998763

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.80  E-value=0.027  Score=36.20  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|+|..|...+..|.+.|.+++++++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999988899999998763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.77  E-value=0.068  Score=40.05  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....++.|||.|..|...|..|.+.|++|+++++.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            344679999999999999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.73  E-value=0.077  Score=38.59  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..|+ .|.+|+++++..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            36999999999999999999 999999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.73  E-value=0.067  Score=39.01  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ..++.|||.|..|...|..|.+.|+ +|+++|+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            3579999999999999999999999 99999985

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.72  E-value=0.064  Score=38.37  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.+.|++|+++++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.70  E-value=0.14  Score=37.05  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|..++..|.+.|. +++++.|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999999 899998764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.69  E-value=0.084  Score=39.45  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|+|..|..++..+...|.+|+++|+..
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3569999999999999999999999999998753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=93.63  E-value=0.14  Score=37.68  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=29.0

Q ss_pred             cccEEEECCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..+++|||+| ..|..+|..|...|..|+++.+.
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            4479999999 58999999999999999999754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.62  E-value=0.085  Score=40.22  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ...+++|+|+|.+|..+|..|...|. +++++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45689999999999999999999999 79999987

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.60  E-value=0.07  Score=38.00  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.+.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            357999999999999999999999999999887653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.58  E-value=0.073  Score=38.87  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++.|||+|..|...|..|++.|.+|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            346999999999999999999999999999 54

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.57  E-value=0.095  Score=35.52  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|+| +|..|...+..|.+.|++|.++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            488999 99999999999999999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.55  E-value=0.057  Score=37.85  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+++|||+|..|+.+|..|.+.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            357999999999999999999989 999998765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.53  E-value=0.09  Score=38.54  Aligned_cols=33  Identities=33%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..+.|||.|..|.+.|..|.+.|+  +|+++|+.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            469999999999999999999999  899999865

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.52  E-value=0.088  Score=38.54  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            355689999999999999999999998 789998664

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.50  E-value=0.11  Score=40.75  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -.++|+|+|..|...|..|.+.|.+|+++|+.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            57999999999999999999999999999988653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=93.45  E-value=0.087  Score=40.49  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHH--------------------HcCC-cEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLA--------------------SAGQ-KVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~--------------------~~g~-~v~v~e~~~~   65 (119)
                      .-+++|||+|..|+.+|..|+                    +.|. +|+++++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            357999999999999999998                    5687 6999998764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.44  E-value=0.18  Score=36.63  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|..+++.|.+.|. +++++.|..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            469999999999999999999998 899998764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.43  E-value=0.098  Score=39.29  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ...++|+|+|..|..+|..+...|.+|+++|+.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            457999999999999999999999999999865

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.41  E-value=0.1  Score=37.67  Aligned_cols=32  Identities=31%  Similarity=0.590  Sum_probs=29.7

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.||| .|..|...|..|.+.|++|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            699999 99999999999999999999998764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=93.39  E-value=0.18  Score=36.97  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=29.5

Q ss_pred             cccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+++|||+|. .|..+|..|.+.|..|+++.+..
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            34799999995 79999999999999999997654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.36  E-value=0.072  Score=38.94  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.+.|++|+++|+.+
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            469999999999999999999999999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.35  E-value=0.11  Score=40.30  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+.|||.|..|+..|..++++|++|+.+|-.+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3579999999999999999999999999998653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=93.33  E-value=0.25  Score=36.47  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ..++|+|+|-+|..++..|++.|. +|+++.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            369999999999999999999999 79999887

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=93.32  E-value=0.17  Score=37.59  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             cccEEEECCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..+++|||+| .+|..+|..|...|.+|+++++.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4579999999 46999999999999999998664

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.22  E-value=0.092  Score=38.48  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|.+.|+  +|+++|+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            48999999999999999999999  899998764

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=93.20  E-value=0.13  Score=39.09  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=33.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..+.++|+|+|+.+..++..+...|++|+++|.++.+.
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            45789999999999999999999999999999876543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.20  E-value=0.11  Score=37.85  Aligned_cols=32  Identities=22%  Similarity=0.445  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..++++  +.+|+++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999885  67899999865

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.19  E-value=0.13  Score=38.17  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++.|||+|..|..+|+.|+..++ .+.++|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4579999999999999999999998 999998765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.17  E-value=0.13  Score=40.15  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.++.|||.|.-|...|..|+++|++|+++++.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999999999999999998864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.16  E-value=0.11  Score=36.71  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||+|..|...|..|.+.|++|.++++.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999998764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.12  E-value=0.042  Score=38.09  Aligned_cols=34  Identities=24%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++|+|+|..|...+..|.+.|+ |+++|+.+.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3469999999999999999999999 999998653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.09  E-value=0.1  Score=37.09  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|+|-.|..++..|++.|. +++++|...
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            45689999999999999999999999 688988653

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.07  E-value=0.12  Score=36.84  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|.+.|++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.05  E-value=0.12  Score=37.69  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++.|||+|..|...|..++..|+ ++.++|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            369999999999999999999997 899998654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.98  E-value=0.11  Score=38.08  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.+.| ++|+++|+.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.97  E-value=0.062  Score=39.76  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|.+.|++|+++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999998764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=92.95  E-value=0.26  Score=35.70  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|..++..|.+.|. +++++.+..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            469999999999999999999997 899998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.88  E-value=0.13  Score=38.58  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            356789999999999999999999999 688998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.86  E-value=0.1  Score=37.40  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .-+++|||+|..|+.+|..|++.+ +|+++.+.
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            357999999999999999999988 69998876

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=92.83  E-value=0.11  Score=43.79  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999999999999999999997 899998765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.83  E-value=0.13  Score=37.78  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC--cEEEEecC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKG   63 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~   63 (119)
                      .++.++.|||+|..|.+.++.+...++  .+.++|..
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            445689999999999999999998887  78999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=92.82  E-value=0.078  Score=44.52  Aligned_cols=34  Identities=18%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|..|+.+|..|++.|.+|+++|+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~  318 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSS  318 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc
Confidence            4799999999999999999999999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=92.82  E-value=0.29  Score=36.04  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ..++|+|+|-+|..+++.|.+.|. +++|+.|.
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            469999999999999999999998 79999877

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.80  E-value=0.15  Score=36.70  Aligned_cols=30  Identities=23%  Similarity=0.453  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++|+|+|-+|..+|..|.+.| +|+++++.
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            5999999988999999999999 99999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.76  E-value=0.13  Score=36.09  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|.+.| ++|.++++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 8999998764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.76  E-value=0.15  Score=36.85  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+.|||.|..|..+|..+...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3469999999999999999999999999999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=92.74  E-value=0.1  Score=42.40  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             ccEEEEC--CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVG--SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG--~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|||  +|..|+.+|..|++.|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            3799998  89999999999999999999999876

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=92.73  E-value=0.13  Score=38.48  Aligned_cols=34  Identities=29%  Similarity=0.606  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ...|+|||+|-.|..+|..|++.|. +++++|...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            5679999999999999999999999 799998753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.72  E-value=0.11  Score=42.48  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.|.|||+|.-|...|..+++.|++|+++|+.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=92.70  E-value=0.095  Score=40.74  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--------------CCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--------------GQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--------------g~~v~v~e~~~~~   66 (119)
                      ..++|||+|++|+.+|..++..              ..+|+++|..+.+
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            4699999999999999877642              3689999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.70  E-value=0.16  Score=36.68  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+.|||.|..|..+|..+...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3469999999999999999999999999999764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.68  E-value=0.19  Score=35.36  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+|..|..++..|.++|++|+++.+..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            69999999999999999999999999998764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.67  E-value=0.11  Score=40.03  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|++.  |++|+++|+..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            3699999999999999999998  89999998753

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.62  E-value=0.089  Score=39.82  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..|++ |++|+++|+.+
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            48999999999999999999 99999998753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.61  E-value=0.15  Score=36.20  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+.|||.|..|...|..|.+.|+  +|+++|+.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            48999999999999999999998  899998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.60  E-value=0.15  Score=36.45  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||+ |..|...|..|.+.|++|+++++..
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999 9999999999999999999998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.60  E-value=0.12  Score=40.46  Aligned_cols=33  Identities=36%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|+|+|..|..+|..|+..|.+|++.|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            458999999999999999999999999998764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.59  E-value=0.14  Score=38.12  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.+.|||.|..|.+.|..|.+.|++|+++|+.+
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999999775

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.58  E-value=0.16  Score=36.69  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|+|-+|..+++.|.+.|.+++++.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3469999999999999999999998899998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.56  E-value=0.14  Score=39.55  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .-.++|||+|..|...+..|.+.|.+|+++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            346999999999999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.54  E-value=0.19  Score=33.64  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |..|..++..|.++|++|.++.+..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            3899996 8899999999999999999998764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.52  E-value=0.18  Score=37.17  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++.|||+|..|.++|+.+...++ ++.++|..+
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            469999999999999999999888 899998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.51  E-value=0.14  Score=36.27  Aligned_cols=31  Identities=26%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||.|..|...|..|.+ |++|+++++..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999998764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.50  E-value=0.11  Score=38.56  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-------CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-------QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-------~~v~v~e~~~~   65 (119)
                      ++.|||+|..|...|..|++.|       .+|+++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       89999987654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.49  E-value=0.13  Score=37.30  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~   64 (119)
                      ++.|||+|..|...|..|.++|  ..|.++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            5899999999999999999989  5899998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.47  E-value=0.13  Score=36.63  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|.+.|++|.++++..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            69999999999999999999999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.47  E-value=0.16  Score=35.63  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+|..|..++..|.++|++|+++.+..
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            59999999999999999999999999998765

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.46  E-value=0.14  Score=37.53  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|+.+..+|+  .+.++|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999999998  899999765

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.45  E-value=0.15  Score=37.14  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ..++|+|+|.+|..++..|.+.|. +++++++.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            369999999999999999999998 89999876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.44  E-value=0.31  Score=35.25  Aligned_cols=33  Identities=33%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|..++..|.+.|. ++++++|..
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            469999999999999999999999 699998763

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.42  E-value=0.17  Score=36.90  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC----CcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG----QKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g----~~v~v~e~~~   64 (119)
                      ..++.|||+|..|...|..|.+.|    ++|+++++..
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            347999999999999999999999    7899998764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.37  E-value=0.11  Score=39.96  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|+..|..|++ |++|+++|+.+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            369999999999999999998 99999999764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.34  E-value=0.14  Score=39.49  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHH----cCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~~   64 (119)
                      .-+++|||+|..|+.+|..|++    .|.+|+++++.+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            3579999999999999998876    478999998764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=92.31  E-value=0.33  Score=35.49  Aligned_cols=32  Identities=31%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             ccEEEECCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .+++|||.| .+|..+|..|.+.|..|+++.+.
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            479999965 58999999999999999999763

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.17  E-value=0.13  Score=37.47  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|+|+|..|.++|+.|...++  ++.++|..+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            48999999999999999999988  899998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.17  E-value=0.096  Score=38.37  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-------CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-------QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-------~~v~v~e~~~~   65 (119)
                      ++.|||+|..|...|..|++.|       .+|+++++...
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            6999999999999999999988       89999987654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.16  E-value=0.17  Score=35.33  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC----CcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG----QKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g----~~v~v~e~~~~   65 (119)
                      .++.|||.|..|...|..|.+.|    .+|.++++...
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            36999999999999999999989    68999988654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.16  E-value=0.23  Score=33.98  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .-.++|.|+ |..|..++..|.++|++|+++.+..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            346999998 8899999999999999999998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.16  E-value=0.21  Score=36.85  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+.|||.|..|.+.|..|.+.|++|++.++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            369999999999999999999999999998764

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=92.14  E-value=0.34  Score=35.66  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCcEEEEec
Q 033419           32 CDVVIVGSGC-GGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        32 ~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      .+++|||.|. +|..+|..|.+.|..|+++.+
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~  197 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHS  197 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence            4799999764 899999999999999999986

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.10  E-value=0.24  Score=35.27  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++|+|+|-+|..+++.|.+.|. ++++++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 899998764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.06  E-value=0.19  Score=35.08  Aligned_cols=32  Identities=9%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC----cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ----KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~----~v~v~e~~~   64 (119)
                      ++.|||.|..|...+..|.+.|+    +|.++++.+
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            69999999999999999999998    999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.01  E-value=0.23  Score=33.45  Aligned_cols=32  Identities=19%  Similarity=0.448  Sum_probs=28.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |..|..++..|.++|++|.++.+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            3899998 8999999999999999999998763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.00  E-value=0.21  Score=38.69  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|+++|++|.++++..
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999999999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=91.96  E-value=0.17  Score=37.73  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|+|+|-.|..+|..|++.|. +++|+|...
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            45789999999999999999999999 799998653

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.94  E-value=0.13  Score=41.93  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..|.|||+|.-|...|..+++.|++|+++|+.+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.89  E-value=0.14  Score=39.45  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+..|||.|..|+..|..|+++|++|+++|..+
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468899999999999999999999999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=91.88  E-value=0.21  Score=38.82  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++.|||.|.-|...|..|+++|++|+++++.+
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3579999999999999999999999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.83  E-value=0.25  Score=34.91  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||+|..|...+..|.+.|.+++++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998763

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=91.82  E-value=0.24  Score=38.19  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ....|+|||+|-.|..++..|++.|. +++++|..
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46789999999999999999999999 79999865

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.82  E-value=0.18  Score=39.01  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|.|.+|..+|..+...|.+|++.|+.+
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3469999999999999999999999999999654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.82  E-value=0.12  Score=38.69  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHH-cCCcEEEEe
Q 033419           33 DVVIVGSGCGGGVAAAVLAS-AGQKVVVIE   61 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e   61 (119)
                      ++.|||+|..|...|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            59999999999999999988 599999998

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.82  E-value=0.38  Score=34.64  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..++|+|+|-+|..++..|.+.|. +++++.|..
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            469999999999999999999997 899987753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.78  E-value=0.22  Score=34.95  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      ..+.|||+|..|...|..+.+.|++ |.++++..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999998 88998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.77  E-value=0.3  Score=36.34  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|+|..|..++..+.+.|++|.++|..+
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            3479999999999999999999999999998754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.76  E-value=0.29  Score=35.09  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC---cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ---KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~---~v~v~e~~~   64 (119)
                      .++.|||+|..|...+..+.+.|+   +|.++|+.+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            469999999999999999999998   899999875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.75  E-value=0.44  Score=36.81  Aligned_cols=31  Identities=29%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC---cEEEEe
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ---KVVVIE   61 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~---~v~v~e   61 (119)
                      ...++|+|+|-+|..++..|.+.|.   ++++++
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3479999999999999999999998   799999

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.73  E-value=0.26  Score=38.50  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.++|++|+++++.+
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.71  E-value=0.18  Score=39.52  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .-.++|+|.|..|..+|..+...|.+|+++|+.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3469999999999999999999999999999754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.68  E-value=0.28  Score=32.37  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |..|..++..|.++|++|.++.+..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            5899998 9999999999999999999998764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=91.67  E-value=0.23  Score=38.47  Aligned_cols=32  Identities=38%  Similarity=0.447  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|+++|++|+++++..
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999998764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.65  E-value=0.2  Score=36.88  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+.|+|+|..|.++|+.+...++  .+.++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            48999999999999999999888  799998765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.64  E-value=0.21  Score=36.65  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~   63 (119)
                      ..+++|||+|..|...++.+..+++  .+.++|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4579999999999999999998886  79999854

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.61  E-value=0.13  Score=39.88  Aligned_cols=32  Identities=34%  Similarity=0.523  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..|++.  |++|+++|+..
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            699999999999999999998  78999998753

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.56  E-value=0.28  Score=40.32  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.|.|||+|.-|..+|..++..|++|+++|..+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            479999999999999999999999999999765

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.55  E-value=0.19  Score=37.42  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..++.|||+|..|..+|+.++.+|+  .+.++|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            3479999999999999999999998  799998653

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=91.54  E-value=0.15  Score=38.46  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ...++|+|+|+.+..++..++..|++|+++|.++.+.
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~  235 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC  235 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc
Confidence            5689999999999999999999999999999876543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.48  E-value=0.18  Score=36.64  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+|-+||-|.-|...|..|.++|++|+++|+.+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=91.35  E-value=0.48  Score=34.61  Aligned_cols=33  Identities=33%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             cccEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..+++|||.|. +|..+|..|.+.|..|+++.+.
T Consensus       160 Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          160 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            34799999765 8999999999999999999764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=91.32  E-value=0.21  Score=35.04  Aligned_cols=30  Identities=30%  Similarity=0.252  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      ++.|||.|..|...|..|.+.|++|++.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            488999999999999999999999999876

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.28  E-value=0.24  Score=36.73  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC--cEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~   63 (119)
                      ...+.|||+|..|..+|+.+...++  .+.++|..
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            3579999999999999999999888  79999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=91.28  E-value=0.22  Score=38.83  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+++|||+|..|+.++..+++.+.+|+++++.+.+
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            357999999999999999999999999999987643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=91.25  E-value=0.23  Score=38.05  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHc--------------------CC-cEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASA--------------------GQ-KVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~--------------------g~-~v~v~e~~~~~   66 (119)
                      .-+++|||+|..|+.+|..|++.                    |. +|+++++....
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            34699999999999999998863                    55 89999987643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.21  E-value=0.44  Score=35.42  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+.|+|+|..|...+..+.+.|++|.++|..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            45799999999999999999999999999997643

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=91.20  E-value=0.51  Score=34.49  Aligned_cols=32  Identities=22%  Similarity=0.234  Sum_probs=27.9

Q ss_pred             ccEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .+++|||.|. +|..+|..|...|..|+++.+.
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            4799999765 8999999999999999999754

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=91.19  E-value=0.24  Score=39.93  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            356789999999999999999999999 689998764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.16  E-value=0.35  Score=34.86  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=29.3

Q ss_pred             ccccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..-.++|.|+ |..|..++..|.+.|++|.++++..
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3456999998 9999999999999999999998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=91.15  E-value=0.26  Score=37.11  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++|+|.|..|..+|..|.+.|.+|++.|..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46999999999999999999999999999865

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.09  E-value=0.29  Score=36.32  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ...++.|||+|..|..+|+.+..+|+  .+.++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            34579999999999999999999888  799998653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.01  E-value=0.29  Score=35.79  Aligned_cols=33  Identities=27%  Similarity=0.516  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .++.|||+|..|.+.|+.+...++  .+.++|...
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            479999999999999999988876  799998764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=90.99  E-value=0.3  Score=35.72  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ++.|||+|..|...|+.+...++ .+.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999988888 599998764

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.98  E-value=0.073  Score=37.77  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .++.|||.|..|.+.|..|.++|++|+.+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            36999999999999999999999999998864

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=90.90  E-value=0.24  Score=39.74  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~  361 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  361 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45689999999999999999999999 699998653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=90.84  E-value=0.25  Score=37.35  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .-.++|+|+|..|..++..+...|. +|+++++..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3469999999999999999999999 899998753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.83  E-value=0.29  Score=36.16  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~   63 (119)
                      ...++.|||+|..|.+.++.+...++  .+.++|..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            44689999999999999999988876  68899874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=90.78  E-value=0.36  Score=34.50  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=28.7

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++|+| +|-+|..++..|.+.|.+|+++++.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4689999 8999999999999999999999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=90.68  E-value=0.33  Score=37.48  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++.|||.|..|...|..|.++|++|.++++..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=90.67  E-value=0.37  Score=34.10  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=29.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +|+|.|| |..|...+..|.++|++|+++-|.+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4899998 99999999999999999999987643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=90.67  E-value=0.33  Score=35.84  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...+.|||.|..|...|..+...|++|+++++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            34699999999999999999999999999997653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.51  E-value=0.28  Score=39.49  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             cEEEEC--CChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVG--SGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG--~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +++|||  +|..|+.+|..|++.|.+|+++++.+.+
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            599999  8999999999999999999999987654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.49  E-value=0.27  Score=33.23  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |..|..++..|.++|++|.++.+..
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             EEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            5999996 8899999999999999999998864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=90.47  E-value=0.21  Score=35.44  Aligned_cols=31  Identities=29%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|.+.|++|++++ ..
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            59999999999999999999999999998 53

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.45  E-value=0.37  Score=35.48  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+.|||.|..|...|..+...|++|+++++..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3469999999999999999999999999999754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=90.44  E-value=0.28  Score=37.95  Aligned_cols=34  Identities=32%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...++|+|.|.+|..+|..|...|.+|+++|+.+
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3469999999999999999999999999999754

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.19  E-value=0.42  Score=36.45  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             ccccEEEECC-ChHHHHHHHHHHHcCC---cEEEEecCC
Q 033419           30 IKCDVVIVGS-GCGGGVAAAVLASAGQ---KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~-G~~G~~~a~~l~~~g~---~v~v~e~~~   64 (119)
                      ....|+|||+ |.+|..++.-+...|.   .|+++|...
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            3678999999 9999999999999998   899999865

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=90.12  E-value=0.5  Score=32.30  Aligned_cols=31  Identities=35%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|+ |-.|..++..|.+.|++|+++++..
T Consensus         4 vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~   35 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARAGHTVIGIDRGQ   35 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            788887 7789999999999999999998764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=90.07  E-value=0.38  Score=34.57  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ..++|+|+|-++..+++.|.+.|. +++|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            369999999999999999999998 79999876

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.05  E-value=0.43  Score=33.75  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..++|.|+ |..|..++..|.+.|++|+++++...
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            46999998 99999999999999999999987643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.04  E-value=0.32  Score=33.98  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...+..|.+.|..|.++++.+
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            69999999999999999999999999998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=90.04  E-value=0.33  Score=37.79  Aligned_cols=33  Identities=36%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|+|.|.+|..+|..+...|.+|++.|..+
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-12
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	5e-12
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-11
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	4e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-11
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-10
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	1e-09
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-09
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-09
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	7e-09
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	9e-09
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-08
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-08
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	7e-08
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	9e-08
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	9e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	1e-07
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-07
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-07
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-07
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-07
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-07
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-07
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-07
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-07
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	2e-07
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-07
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-07
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	3e-07
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-07
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	4e-07
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	0.001
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-07
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	4e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-07
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	5e-07
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	6e-07
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-06
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-06
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	3e-06
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	2e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	3e-05
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	3e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	3e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	5e-05
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-05
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	7e-05
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	2e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	4e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-04
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	7e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	8e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	0.001
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.002
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	0.002
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	0.004
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.004

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 59.6 bits (143), Expect = 2e-12
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72
            V++G+G G  V+A  L  AG + +++E G  +      
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPD 43

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTA-YCLSKRIAESL 114
           + LYV D S+ P +VGVNP +TI + A   + + I + +
Sbjct: 328 KNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDV 366

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 58.8 bits (141), Expect = 5e-12
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72
          +   +++GSG GG VAA  L  AG    ++E G  +      
Sbjct: 7  RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSD 48

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTA-YCLSKRIAESL 114
            GLYV D S+ P  VGVNP +TI + A   + K I+  +
Sbjct: 332 PGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 370

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70
          IK DVVIVGSG  G   A  L  AG KV + + G   +   
Sbjct: 3  IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 43

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 53.4 bits (127), Expect = 4e-10
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 77  EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQS 118
           + L++      P+A G NP +T  S A    + I ++     
Sbjct: 336 KNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSP 377

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 5e-11
 Identities = 10/36 (27%), Positives = 24/36 (66%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
            DV+++G+G    + + +L+  G+KV+ I+K +++
Sbjct: 5  DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY 40

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.8 bits (130), Expect = 1e-10
 Identities = 8/36 (22%), Positives = 24/36 (66%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          + DV+++G+G    + + +++  G+KV+ +++  Y+
Sbjct: 6  EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY 41

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCD--ASVFPSA 90
          DVV+VG G  G  AA +L  +G  VVV+E  +    + Y+ L  + +   D   S     
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT-LRNQKVKYVDLGGSYVGPT 59

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D +IVG+G GG +AA  L+ AG+KV+++E+G
Sbjct: 4  DYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          +  DV+++G G  G +AA   A  G  V++++KGN  
Sbjct: 1  MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           DVV+VGSG  G  AA     +G KV++IEK   
Sbjct: 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 50.9 bits (120), Expect = 3e-09
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
            CD +++G G  G  AA      G   +V+   
Sbjct: 4  QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLI 37

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 50.9 bits (120), Expect = 3e-09
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVI 60
            E D      + + GL+ T + K         VVIVG+G  G  AA VLA AG +V V+
Sbjct: 8  FQENDYEEFLEIARNGLKATSNPK--------HVVIVGAGMAGLSAAYVLAGAGHQVTVL 59

Query: 61 EKGNYF 66
          E     
Sbjct: 60 EASERP 65

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.7 bits (117), Expect = 7e-09
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          +V +VG G  G   A  L S G   V++E     
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 49.6 bits (117), Expect = 9e-09
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
             V++VG+G  G  A+     AG  V++++K  +
Sbjct: 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS---LLEAEGLYVCDA 84
          +K  V I+G+G  G +   +L  AG   V++E+             +LE   + +   
Sbjct: 1  MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLRE 58

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           DVVI+GSG  G  AA     AG KV+++EK   
Sbjct: 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 47.9 bits (113), Expect = 2e-08
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          I+ + ++VG+G GG VAA   A  GQKV ++EKGN 
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL 37

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-08
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           V+I+GSG  G  AA  L S G  V ++E  + 
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 39

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 47.7 bits (112), Expect = 3e-08
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
           I+  ++I+G G GG VAA      G   V++E    
Sbjct: 3  TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL 39

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.9 bits (110), Expect = 7e-08
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 15 KGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLA----SAGQKVVVIEKGN 64
          K  ++ K  +     ++ D++I+G G  G  AA   A      G KV ++EK  
Sbjct: 5  KKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (109), Expect = 9e-08
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
            DVVI+G G  G VAA   A  G     +EK  
Sbjct: 5  SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 46.7 bits (109), Expect = 9e-08
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          K   + V++G G  G   A  LA   +   + E G
Sbjct: 2  KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69
            + +I+G+G  G   AA LA  G+ V V + G     K
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK 42

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 46.5 bits (108), Expect = 1e-07
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY 65
           V++VG+G  G  AA  L+ AG   ++++E  ++
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH 35

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          V ++G+G  G  AA  L   G  V V E    
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK 35

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 1e-07
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          D +IVGSG  G V A  L    +KV+VIEK N+ 
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 45.7 bits (107), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          DVV++G G GG  AA   A  G KV ++E+    
Sbjct: 8  DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          + D V++G+G  G  AA  ++ +GQ   ++ K  
Sbjct: 7  EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65
          D + +G G GG  +    A  GQK  +IE    
Sbjct: 4  DYIAIGGGSGGIASINRAAMYGQKCALIEAKEL 36

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D++++G G GG  AA   A    KV ++EK 
Sbjct: 3  DLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69
          D++I+G G GG  AA   A   +KV+V++        
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLG 41

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 15 KGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
           G +V  +  +N  + + D + +G G  G   +A L + G + +++++  + 
Sbjct: 27 DGGEVIYNVDENDPR-EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71
          K DV+++G+G GG VAA   A  G K  +IEK      K  
Sbjct: 3  KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.5 bits (106), Expect = 3e-07
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPKDYSL-LEAEGLYVCDA 84
           D++I G+G GG   A  L  AG  KV ++E  +   P    + ++   +     
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAE 56

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.8 bits (105), Expect = 3e-07
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          + DVVI+G G GG VAA   A  G K   IEK    
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64
            + D+ IVG+G  G  AA   A A    K+ +I K  
Sbjct: 3  TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          CDV+I+GSG  G   A  LA    +V+V+ KG 
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 39

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKD 70
          D +I G G  G   AA L       V+VIE G+Y + + 
Sbjct: 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRG 57

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 19/90 (21%)

Query: 39  SGCGGGVAAAVLASAGQKVVV-----------IEKGNYFTPKDYSLLEAEGLYVCDASVF 87
           SG G     ++L   G   VV            E G         +   +GL V D S+ 
Sbjct: 299 SGIG---MKSILEPLGIDTVVDLPVGLCSMMPKEMGGVVDN-AARVYGVQGLRVIDGSIP 354

Query: 88  PSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
           P+ +  + M    +  Y ++ +I++++ E 
Sbjct: 355 PTQMSSHVM----TVFYAMALKISDAILED 380

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 44.7 bits (104), Expect = 4e-07
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK----------GNYFTPKDYSLLEAEGLYVC 82
           + +VG    G  AA +L  AG  V V E+          G    P+    L  +G+ + 
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD 65

Query: 83 DASVFPSAVGV 93
            SV  S++  
Sbjct: 66 SISVPSSSMEY 76

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D +++G G GG  +A   A  G +  V+E  
Sbjct: 5  DYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 44.7 bits (104), Expect = 4e-07
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          DV++VG+G  G  A   LA  G K ++++  +
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 44.5 bits (104), Expect = 5e-07
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKD 70
          D +I G G  G   AA L    + KV+VIEKG Y +   
Sbjct: 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDG 64

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 31 KCDVVIVGSGCGGGVAAAVLA------SAGQKVVVIEKGNY 65
          + DVVIVG+G  G  AA  L           +V ++EK  +
Sbjct: 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          + DV++VG+G  G  A   L   G+ V VIE   
Sbjct: 7  EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 40

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          ++IVG+G  G V    LA  G +V +I++ ++ 
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 43.3 bits (101), Expect = 1e-06
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
          D VIVG G  G   AA L S   KV+V+E+G
Sbjct: 28 DYVIVGGGTSGCPLAATL-SEKYKVLVLERG 57

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGNYF 66
            + DVV+VG+G  G  AA  ++ +   +V +IE+    
Sbjct: 31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 42.4 bits (98), Expect = 3e-06
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 31 KCDVVIVGSGCGGGVAAAVLAS-----AGQKVVVIEK 62
           CDV+IVG+G  G +AA VL+         KV +I+K
Sbjct: 7  YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 43

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKG 63
            +VI+G+G  G   A  L + G   + V+++G
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72
          D+V++G+G GG  AA   A+  +K V +          + 
Sbjct: 5  DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFF 44

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.5 bits (91), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
             + IVGSG     AA   A A  K ++ E  
Sbjct: 5  NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVV-VIEKGNYFTPKDY 71
          D+V++G+G GG  A    AS  +K V VI+   +  P  Y
Sbjct: 5  DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHY 44

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
          DV+IVGSG  G  AA   A  G +  ++ +
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGE 32

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 29 KIKCDVVIVGSGCGGGVAAAVLA--SAGQKVVVIEKGNYF 66
              DV+IVG+G  G  AA V+A      KV +IE     
Sbjct: 48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.5 bits (88), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQK---VVVIEKGNY 65
           +VI+G G  G  AA V A++  +   V VI+    
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI 38

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 7e-05
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
             ++I+GSG  G  AA   A A  + V+I      
Sbjct: 5  HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG 40

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 38.1 bits (87), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63
           VV++GSG  G  +A +LA  G  V ++ + 
Sbjct: 8  RVVVLGSGVIGLSSALILARKGYSVHILARD 38

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62
           V+IVG+G  G   A  LA  G +V ++ +
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKGVRVGLLTQ 33

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64
          + I+G+G  G V A  L +     +V + E+  
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.9 bits (81), Expect = 4e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 34 VVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF 66
          + ++G+G      A+ LA  G   + + EK  Y 
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQEYV 40

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 7e-04
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
            DV+++G+G    + AA  + +GQ+V+ ++  +Y+
Sbjct: 6  DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYY 41

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 35.1 bits (79), Expect = 8e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68
          K  VV++G+G       A L  AG + ++   G+    
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER 40

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNY 65
          + +VGSG  G   A  L        V + EK   
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 34 VVIVGSGCGGGVAAAVLA--SAGQKVVVIEKGNYFT 67
          V+++GS  GG  A   L       ++   EKG++ +
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66
          VV++G+G  G   A  +      V+       +
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVY 35

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64
          +VVIVG+G  G   A  L ++G +  +   G+
Sbjct: 5  NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 32.8 bits (73), Expect = 0.004
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 34 VVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYF 66
          VV+VG G GG  AA  +  A    +V +IE    +
Sbjct: 5  VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.4
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.36
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.17
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.17
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.15
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.15
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.11
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.11
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.09
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.04
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.04
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.02
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.99
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.99
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.97
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.94
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.93
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.89
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.89
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.89
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.89
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.85
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.85
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.76
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.76
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.75
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.72
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.71
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.71
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.7
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.69
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.69
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.68
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.66
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.65
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.65
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.64
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.64
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.64
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.63
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.63
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.62
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.61
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.6
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.6
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.6
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.6
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.53
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.52
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.51
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.49
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.48
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.44
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.41
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.38
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.35
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.21
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.0
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.95
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.92
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.86
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.85
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.76
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.72
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.67
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.63
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.53
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.52
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.46
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.31
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.26
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.2
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.12
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.08
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.01
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.95
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.92
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.83
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.68
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.62
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.49
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.42
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.34
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.28
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.26
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.09
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.81
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.64
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.58
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.47
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.45
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.32
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.3
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.27
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.24
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.02
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.96
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.96
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.94
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.9
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.61
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.48
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.48
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.45
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.29
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.26
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.25
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.23
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.21
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.19
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.84
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.84
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.77
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.75
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.73
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.66
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.22
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.99
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.91
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.76
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.59
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.52
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.49
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.28
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	92.24
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.2
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.98
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.45
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.31
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.3
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.16
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.05
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.88
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	90.83
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.82
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.68
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.6
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.29
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.0
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.97
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	89.95
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.75
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.57
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.5
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.4
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.25
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.99
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.96
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.82
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.5
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.41
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.1
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.06
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.62
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.5
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.48
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.36
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.04
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.93
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	86.9
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.53
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.46
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	86.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.24
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.2
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.08
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	85.97
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.87
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.78
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.63
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.45
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.45
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.43
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	85.41
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.35
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.34
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.32
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.18
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.17
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.81
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.76
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.68
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.5
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.49
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.48
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.34
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.32
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	84.1
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.08
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.05
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.98
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	83.91
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	83.8
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.74
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.55
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	83.54
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.54
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.39
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.38
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.35
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.29
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.16
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.85
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.83
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.78
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.5
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.5
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.49
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	82.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.26
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.22
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.11
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	82.1
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.06
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.84
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	81.84
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.74
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.73
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.6
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.59
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.56
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	81.53
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.84
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	80.77
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.63
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.5
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.29
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.1

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.5e-13  Score=92.72  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=41.7

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~   71 (119)
                      +|+.+|||+|||+|++|+++|+.|+++|++|+|+|+++.+||..+
T Consensus         1 ~m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           1 TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            467899999999999999999999999999999999999998654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.17  E-value=1.8e-11  Score=85.89  Aligned_cols=41  Identities=24%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      |.++|||+|||+|++|+++|+.|+++|++|+|+|+....++
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~g   41 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   41 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            45689999999999999999999999999999999865443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2e-11  Score=84.92  Aligned_cols=45  Identities=31%  Similarity=0.394  Sum_probs=40.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      .++.+|+|||+|++||+||+.|+++|++|+|+|+.+.+||+.++.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~   47 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF   47 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEE
Confidence            456789999999999999999999999999999999999976554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.15  E-value=2.3e-11  Score=81.81  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=36.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCcee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDY   71 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~   71 (119)
                      +||+|||||++|+++|+.|+++|+ +|+|+|+.+.+||..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence            589999999999999999999997 6999999999998654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.15  E-value=1.1e-10  Score=82.09  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=35.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .+|||+|||+|++|+++|+.|+++|++|+|+|+....+.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~   40 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT   40 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            589999999999999999999999999999999876543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=6e-11  Score=83.04  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=37.8

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      |.+.+||+|||+|++|+.+|+.|+++|++|+|+|+.+.+|.
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~   41 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR   41 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            46789999999999999999999999999999999987763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5e-11  Score=84.52  Aligned_cols=42  Identities=40%  Similarity=0.617  Sum_probs=38.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeecc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL   74 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~   74 (119)
                      ||+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~   42 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLR   42 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEEC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEE
Confidence            899999999999999999999999999999999999766543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=3.5e-11  Score=82.37  Aligned_cols=43  Identities=33%  Similarity=0.361  Sum_probs=39.6

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      +|.++||++|||+||+|+.+|.++++.|++|+|+|+.+.+||.
T Consensus         1 ~m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~   43 (233)
T d1v59a1           1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT   43 (233)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceE
Confidence            3678999999999999999999999999999999998887764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.08  E-value=7.1e-11  Score=81.48  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=38.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      ||+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   42 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH   42 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEE
Confidence            79999999999999999999999999999999999976543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.04  E-value=1.4e-10  Score=79.76  Aligned_cols=40  Identities=33%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t   42 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS   42 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEE
Confidence            5999999999999999999999999999999999997654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1e-10  Score=84.19  Aligned_cols=41  Identities=44%  Similarity=0.563  Sum_probs=38.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      +|++|||||++|+++|+.|+++|.+|+|+|+.+.+||+.++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            69999999999999999999999999999999999997654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.04  E-value=1.2e-10  Score=81.83  Aligned_cols=43  Identities=40%  Similarity=0.414  Sum_probs=38.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...+|+|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t   71 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRT   71 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEE
Confidence            3458999999999999999999999999999999999987554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.02  E-value=1.2e-10  Score=80.63  Aligned_cols=40  Identities=35%  Similarity=0.594  Sum_probs=36.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++|||+|||+|++|+.+|+.|+++|++|+|+|+.+.++++
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~   40 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK   40 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence            4799999999999999999999999999999999877754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.99  E-value=2.4e-10  Score=77.53  Aligned_cols=38  Identities=42%  Similarity=0.471  Sum_probs=34.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ++||++|||+||+|+++|.++++.|++|+|+|+....+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            68999999999999999999999999999999876443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.99  E-value=2.4e-10  Score=77.69  Aligned_cols=41  Identities=41%  Similarity=0.417  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      .+||++|||+||+|+.+|..+++.|.+|+|+|+...+||..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCee
Confidence            47999999999999999999999999999999998888753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=3.1e-10  Score=84.39  Aligned_cols=41  Identities=34%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHH------cCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLAS------AGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~------~g~~v~v~e~~~~~g~~   69 (119)
                      ..+|||+||||||+|+++|+.|++      +|++|+|+||+..+|..
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            357999999999999999999997      89999999999877644

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.94  E-value=3.3e-10  Score=77.98  Aligned_cols=41  Identities=34%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ...||++|||+||+|+++|.++++.|++|+|+|+...+||.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~   44 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV   44 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCe
Confidence            45799999999999999999999999999999998887764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.94  E-value=2e-09  Score=73.61  Aligned_cols=41  Identities=27%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ||..+.+|+|||+|++|+++|+.|+++|++|+|+|+....+
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~   42 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            45667799999999999999999999999999999976433

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.93  E-value=7.8e-10  Score=80.12  Aligned_cols=42  Identities=29%  Similarity=0.524  Sum_probs=38.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL   73 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~   73 (119)
                      -+++|||||++|+++|+.|+++|++|+|+|+.+.+||+.++.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~   44 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA   44 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEE
Confidence            469999999999999999999999999999999999976543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.89  E-value=8.2e-10  Score=78.67  Aligned_cols=42  Identities=38%  Similarity=0.461  Sum_probs=38.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..++||+|||+|++|+++|+.|+++|++|+|+||.+..+++.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            357999999999999999999999999999999998877653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.89  E-value=7.2e-10  Score=79.67  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      |+...|||+|||+|++|+++|+.++++|++|+|+||.+..+++
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~   43 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCc
Confidence            3456799999999999999999999999999999998876654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=6.2e-10  Score=78.78  Aligned_cols=42  Identities=29%  Similarity=0.379  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCcccCcee
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNYFTPKDY   71 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~~g~~~~   71 (119)
                      .++||+|||+|++|+.+|+.|++ .|++|+|+|+++.+|+..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            57999999999999999999987 5999999999998887643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.89  E-value=7.1e-10  Score=79.99  Aligned_cols=39  Identities=46%  Similarity=0.514  Sum_probs=35.7

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      |+.+||++|||+|++|+.+|.+|+++|++|+|+|++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            467899999999999999999999999999999998543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=9.5e-10  Score=74.77  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ++||++|||+|++|+.+|..+++.|++|+|+|++. +||.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGt   39 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGT   39 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCe
Confidence            47999999999999999999999999999999864 5654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.2e-09  Score=72.49  Aligned_cols=41  Identities=22%  Similarity=0.283  Sum_probs=37.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ....+|+|||+||+|+++|..|+++|++|+|+|+.+.+||.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce
Confidence            34578999999999999999999999999999999998885

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2e-09  Score=73.80  Aligned_cols=38  Identities=32%  Similarity=0.415  Sum_probs=34.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..||++|||+||+|+++|.++++.|++|+|+|+.+..+
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            46999999999999999999999999999999876533

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.79  E-value=3.1e-09  Score=76.31  Aligned_cols=42  Identities=40%  Similarity=0.472  Sum_probs=38.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ...+||+|||+|++|+++|+.|+++|++|+|+||.+..+++.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            457899999999999999999999999999999998877653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4e-09  Score=71.57  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||++|||+||+|+++|.++++.|++|+|+|+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            479999999999999999999999999999998653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.76  E-value=3.2e-09  Score=76.33  Aligned_cols=41  Identities=24%  Similarity=0.420  Sum_probs=37.8

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ..++||+|||+|++|+++|+.+++.|++|+|+||.+..+++
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~   57 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN   57 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            45789999999999999999999999999999999887765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.75  E-value=4.3e-09  Score=71.19  Aligned_cols=36  Identities=50%  Similarity=0.750  Sum_probs=33.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .+||++|||+||+|+++|..+++.|++|+|+|+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            479999999999999999999999999999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=3.4e-09  Score=72.34  Aligned_cols=39  Identities=31%  Similarity=0.124  Sum_probs=35.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcC-------CcEEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAG-------QKVVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g-------~~v~v~e~~~~~g~~   69 (119)
                      +++|+|||+||+||+||+.|+++|       ++|+|+|+.+.+||.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~   47 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   47 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe
Confidence            468999999999999999999987       579999999998874

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=5.4e-09  Score=69.02  Aligned_cols=33  Identities=36%  Similarity=0.474  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .|||+||||||+|+.+|..+++.|++|+++|++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            489999999999999999999999999999975

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.71  E-value=6.4e-09  Score=71.85  Aligned_cols=38  Identities=37%  Similarity=0.590  Sum_probs=34.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~   68 (119)
                      +.||+|||||++|+++|..|++.|+ +|+|+|+.+.+..
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~   39 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   39 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            3689999999999999999999997 8999999886653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.70  E-value=6.5e-09  Score=74.83  Aligned_cols=41  Identities=32%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||||++|+.+|..|.+.|++++|+|+++.+||.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW   46 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW   46 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccc
Confidence            57899999999999999999999999999999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=1.1e-08  Score=67.85  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCcccCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTPK   69 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~~   69 (119)
                      .-+|+|||||++|+.+|..|++.|++ |+|+|+.+..++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            45799999999999999999999995 9999999887764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.69  E-value=7.4e-09  Score=70.53  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=35.4

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      +.++|++|||+|++|+.+|..+++.|.+|+|+|++. +||
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~-~GG   41 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA-LGG   41 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC-TTH
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-CCC
Confidence            568999999999999999999999999999999875 454

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.68  E-value=1.2e-08  Score=70.36  Aligned_cols=36  Identities=31%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      ..+|+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            457999999999999999999999999999997643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=1e-08  Score=72.02  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++||+|||+||+|+++|..|++.|++|+|+|+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            56999999999999999999999999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.66  E-value=1.9e-08  Score=69.40  Aligned_cols=42  Identities=33%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ....+|+|||+|++|+.+|..|+++|++|+|+|+.+.+|+..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~   88 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL   88 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcc
Confidence            456789999999999999999999999999999999988764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.1e-08  Score=73.38  Aligned_cols=41  Identities=37%  Similarity=0.392  Sum_probs=37.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCce
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~~   70 (119)
                      ..+||+|||+||+|+++|+.|+++  |++|+++|+.+.+|+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            468999999999999999999964  99999999999888764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.65  E-value=1.6e-08  Score=72.87  Aligned_cols=43  Identities=30%  Similarity=0.379  Sum_probs=36.3

Q ss_pred             cccccccEEEECCChHHHHHHHHHHH----cCCcEEEEecCCcccCc
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~~~~g~~   69 (119)
                      ....++||+|||+|++|+++|+.+++    +|++|+|+||....+++
T Consensus        17 ~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          17 TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             EEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ceEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            34567999999999999999998864    69999999998776544

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.64  E-value=1.2e-08  Score=74.16  Aligned_cols=36  Identities=36%  Similarity=0.592  Sum_probs=33.9

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+||||+|.+|+.+|++|+++|++|+|+|++.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            468999999999999999999999999999999974

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=9.5e-09  Score=68.64  Aligned_cols=37  Identities=30%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +++.||+||||||+|+.+|..+++.|++|+++|+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            4678999999999999999999999999999998765

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=9.7e-09  Score=74.17  Aligned_cols=42  Identities=24%  Similarity=0.307  Sum_probs=38.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      .+++||+|||+|++|+.+|..++++|.+|+|+||.+..+++.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            468999999999999999999999999999999998777653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.63  E-value=1e-08  Score=73.18  Aligned_cols=39  Identities=41%  Similarity=0.560  Sum_probs=33.9

Q ss_pred             cccccEEEECCChHHHHHHHHHH-----HcCCcEEEEecCCccc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLA-----SAGQKVVVIEKGNYFT   67 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~-----~~g~~v~v~e~~~~~g   67 (119)
                      ...|||+||||||+|+++|..|+     ++|++|+|+|+.+.+.
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            35699999999999999999996     5799999999986544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.63  E-value=2.5e-08  Score=70.51  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~   65 (119)
                      .||+|||+|++|+++|++|+++|. +|+|+||+..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            589999999999999999999997 6999999854

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=1.3e-08  Score=68.23  Aligned_cols=39  Identities=28%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .+.++||+|||||++|+.+|..+++.|++++++|+....
T Consensus         2 ~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             CcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            356799999999999999999999999999999977643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.61  E-value=2.9e-08  Score=69.38  Aligned_cols=43  Identities=16%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      ..++||++|||+|++|+.+|..+++.|.+|+++|+.+.+||.+
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            4578999999999999999999999999999999998888753

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.9e-08  Score=71.67  Aligned_cols=41  Identities=37%  Similarity=0.545  Sum_probs=34.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~   70 (119)
                      .+++||+|||+|++|+++|+.+++.| +|+|+||.+..+++.
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            45799999999999999999998877 999999998777653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=2e-08  Score=68.70  Aligned_cols=38  Identities=26%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~   69 (119)
                      ++|+|||+||+|++||..|++.  |++|+|+|+.+.+||.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~   41 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL   41 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce
Confidence            4799999999999999999875  7799999999988864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.60  E-value=2.1e-08  Score=70.03  Aligned_cols=37  Identities=32%  Similarity=0.540  Sum_probs=34.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~   69 (119)
                      ||++|||+|++|+.+|.++++.|++|+|+|+.. +||.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGt   38 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGT   38 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCe
Confidence            899999999999999999999999999999865 5664

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=2.4e-08  Score=69.78  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|||+|||+|++|+.+|.++++.|++++++++..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            6999999999999999999999999999999763

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.53  E-value=3.3e-08  Score=72.32  Aligned_cols=35  Identities=46%  Similarity=0.762  Sum_probs=32.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+||++|||+|.+|+.+|.+|++.|++|+|+|++.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            36999999999999999999999999999999984

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.52  E-value=4.1e-08  Score=71.09  Aligned_cols=34  Identities=32%  Similarity=0.627  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .||||||+|.+|+.+|++|+++|++|+|+|++..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            5899999999999999999999999999999753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=6.2e-08  Score=69.53  Aligned_cols=43  Identities=30%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCce
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPKD   70 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~~   70 (119)
                      .+.++||+|||+|++|+.+|..++++  |.+|+|+||....+++.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           2 QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            45689999999999999999999876  77999999988766653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.49  E-value=9e-08  Score=64.97  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +.||++|||+||+|+++|.++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            57999999999999999999999887 688888764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.48  E-value=6.4e-08  Score=66.43  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~   65 (119)
                      +.||++|||+||+|+.+|.++++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            57999999999999999999999886 6999998765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.44  E-value=9.5e-08  Score=70.60  Aligned_cols=37  Identities=43%  Similarity=0.528  Sum_probs=33.7

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~   65 (119)
                      .++||++|||+|.+|+.+|.+|++.+ ++|+|+|++..
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            35799999999999999999999987 79999999964

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.41  E-value=1e-07  Score=70.08  Aligned_cols=37  Identities=38%  Similarity=0.512  Sum_probs=33.1

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCc
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY   65 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~   65 (119)
                      .+.||++|||+|.+|+.+|.+|++.+ ++|+|+|++..
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            45799999999999999999999865 89999999863

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.38  E-value=8.9e-08  Score=69.83  Aligned_cols=37  Identities=41%  Similarity=0.561  Sum_probs=33.2

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ....||+||||+|.+|+.+|.+|+++ ++|+|+|++..
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            44679999999999999999999986 99999999963

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.35  E-value=2.2e-07  Score=66.75  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCce
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKD   70 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~   70 (119)
                      +|+|||||++|+.+|..|.+.+  .+|+|+||++.+||.+
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W   45 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW   45 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence            5999999999999999998766  5899999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=2.1e-07  Score=62.92  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      +|+|||+|++|+++|+.|+++|++|+++|+...+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~   35 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVY   35 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeec
Confidence            4999999999999999999999998888775443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.00  E-value=4.1e-06  Score=51.75  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      +-+++|||+|+.|+.+|..+++.|.+|+++|+.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            3579999999999999999999999999999987653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=6.1e-06  Score=51.05  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|++|+.+|..+++.|.+|+++|+.+.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            469999999999999999999999999999987654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.95  E-value=6.5e-06  Score=51.43  Aligned_cols=37  Identities=30%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .+++|||+|+.|+.+|..|+++|.+|+++|+.+.+.+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~   67 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS   67 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence            5799999999999999999999999999999886543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=3.2e-06  Score=57.82  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcC---CcEEEEecCCcccCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGNYFTPK   69 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~~~g~~   69 (119)
                      .+++|||+||+|+++|.++++.+   ++|+++|+.. +||.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~   41 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGA   41 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCce
Confidence            37999999999999999887655   5799999864 4543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.92  E-value=6.5e-06  Score=50.76  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=32.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|+.|+.+|..+++.|.+|+++|+.+.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            479999999999999999999999999999987654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.90  E-value=5.6e-06  Score=51.60  Aligned_cols=35  Identities=37%  Similarity=0.546  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||||++|+.+|..|++.|.+|+++|+.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            47999999999999999999999999999988754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.89  E-value=8.7e-06  Score=50.87  Aligned_cols=35  Identities=43%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      -+++|||+|+.|+.+|..+++.|.+|+++|+.+.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            47999999999999999999999999999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.86  E-value=1e-05  Score=51.27  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .-+++|||+|++|+.+|..+++.|.+|+++|+.+.+..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~   72 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE   72 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence            35799999999999999999999999999999877543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.85  E-value=9.3e-06  Score=50.42  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-+++|||||..|+.+|..|++.|.+|+++|+.+.+-
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            3469999999999999999999999999999987543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.80  E-value=9.8e-06  Score=51.95  Aligned_cols=33  Identities=39%  Similarity=0.569  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~   65 (119)
                      +++|||+|++|+.+|..|.+.+  .+|+++|+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            6999999999999999999876  47999998874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=1.7e-05  Score=49.41  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-.++|||+|+.|+..|..+++.|.+|+++|+.+.+-
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            3479999999999999999999999999999987654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.1e-05  Score=49.14  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|..|+.+|..+++.|.+|+++|+.+.+-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            479999999999999999999999999999987543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.67  E-value=3.1e-05  Score=47.95  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-+++|||+|..|+..|..+++.|.+|+++|+.+.+-
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            4579999999999999999999999999999887643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=5e-05  Score=47.24  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -+++|||+|+.|+..|..+++.|.+|+++++.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~   54 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL   54 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechh
Confidence            4799999999999999999999999999997643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.59  E-value=3.3e-05  Score=49.96  Aligned_cols=33  Identities=33%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|||+|++|+.+|..|++.|.++++++..+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            479999999999999999999999888776554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.56  E-value=3.2e-05  Score=48.16  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-+++|||+|..|+..|..+++.|.+|+++|+.+.+-
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            3479999999999999999999999999999987654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.53  E-value=4.8e-05  Score=47.61  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-.++|||+|..|+..|..+++.|.+|+++|+.+.+-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            3579999999999999999999999999999987554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.52  E-value=7.1e-05  Score=45.95  Aligned_cols=36  Identities=17%  Similarity=0.304  Sum_probs=32.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      -.++|||+|..|+..|..+++.|.+|+++++.+.+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            469999999999999999999999999999987654

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=9.5e-05  Score=56.19  Aligned_cols=44  Identities=25%  Similarity=0.459  Sum_probs=40.2

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS   72 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~   72 (119)
                      ...|||+|+|.|+.=..+|..|++.|.+|+-+|+++.+|+...+
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            46899999999999999999999999999999999999987544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=7.2e-05  Score=47.80  Aligned_cols=32  Identities=44%  Similarity=0.508  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +++|||+|++|+.+|..|++ +.+|+++|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            58999999999999999965 779999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=8.3e-05  Score=50.05  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYF   66 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~   66 (119)
                      .+++++|||+|++|+.+|..|++.+.  +|+++++.+.+
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            57889999999999999999998776  59999876543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.31  E-value=0.00012  Score=46.98  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -.++|+|+|..|..+|..|.+.|++|+|+|+...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            3589999999999999999999999999998753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.29  E-value=9.9e-05  Score=48.02  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +..|+|||+|++|+.+|..|++.|.++.+++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            34599999999999999999999987666654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.26  E-value=0.00013  Score=47.32  Aligned_cols=32  Identities=34%  Similarity=0.456  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|||+|..|+..|..|+++|++|.++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00023  Score=41.88  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +++|+|.|.+|+++|..|.+.|.+|++.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            699999999999999999999999999998654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.20  E-value=0.0002  Score=47.12  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcc
Q 033419           33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~   66 (119)
                      +|+|||+|.+|+.+|..|++.  +.+|+++|+.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            499999999999999999886  4579999987643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.12  E-value=0.00034  Score=42.80  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|+.|+.+|..+..   ++.+|+++|+.+.+-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            479999999999999976654   456799999877543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.08  E-value=0.00042  Score=42.21  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~g   67 (119)
                      +-+++|||+|++|+.+|..+++   .|.+|+++|+.+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            3479999999999999976654   488999999887654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.03  E-value=0.00036  Score=43.40  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .|+|+|+|..|...|..|.+.|++|+++|+.+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            489999999999999999999999999998763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00036  Score=43.22  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +++|+|.|..|..+|..|.+.|++|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00051  Score=43.57  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      +|+|+|+|..|...|..|++.|++|+++++.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            489999999999999999999999999988764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0006  Score=42.74  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHH----HcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLA----SAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~----~~g~~v~v~e~~~~~g   67 (119)
                      -+++|||+|++|+.+|..|+    +.|.+|+++|+.+.+.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            46999999999999988875    3589999999887644

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00054  Score=45.57  Aligned_cols=32  Identities=31%  Similarity=0.560  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..+++.|++|+++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            69999999999999999999999999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.68  E-value=0.00071  Score=44.67  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|.|||+|..|...|..++.+|++|+++|..+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.62  E-value=0.0015  Score=41.31  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             cEEEE--CCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           33 DVVIV--GSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        33 dv~ii--G~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .++|+  |+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            34544  999999999999999999999999987654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.49  E-value=0.002  Score=41.34  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             cccccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ++.++.++.|||+|..|..+|+.+...++ ++.++|...
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            45678899999999999999999988887 799998664

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.42  E-value=0.0021  Score=40.90  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             ccccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           28 YKIKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      |..+.++.|||+|..|..+|+.|+.+++  .+.++|...
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4456689999999999999999999886  699999764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.0018  Score=43.01  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+.|||.|..|+..|..++++|++|+.+|...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            38999999999999999999999999999753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.28  E-value=0.0076  Score=38.38  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~   65 (119)
                      .-+|+|||||.+++-+|..+.+.|.+ |+++.+.+.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            34699999999999999999998874 888877653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.26  E-value=0.0032  Score=41.15  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+++|+|+|.+|+.++.-+.+.|..|.++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46789999999999999999999999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.09  E-value=0.0041  Score=41.16  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ...+|+|+|+|.+|+.++.-+...|..|.++|...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            46789999999999999999999999999999765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.02  E-value=0.004  Score=39.61  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|.+.|..|.++|++|+++|+.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48899999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.81  E-value=0.0096  Score=38.38  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             cccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           29 KIKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ..+.++.|||+|..|.++|+.|..+|+  .+.++|...
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            346799999999999999999999988  699999753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.81  E-value=0.0064  Score=38.13  Aligned_cols=34  Identities=29%  Similarity=0.583  Sum_probs=30.9

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -.+.||| .|..|...|..|.++|+.|.++|+...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            4799999 699999999999999999999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0039  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      .-.++|||||..|+.-+..|.+.|.+|+|+.+
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            45699999999999999999999999999954

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.68  E-value=0.0057  Score=38.59  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=28.7

Q ss_pred             cEEEE-CCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIV-GSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~ii-G~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|+ |+|..|...|..|++.|++|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            37888 679999999999999999999998874

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.64  E-value=0.0037  Score=41.25  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|+|+|.-|.+.|..|+++|.+|.+..+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            369999999999999999999999999998654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.58  E-value=0.01  Score=35.52  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....++|||+|..|..-|..|.+.|.+++++....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            34579999999999999999999999999997653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.56  E-value=0.0075  Score=38.33  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|+.|+.++..+...|.+|+++|+.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999988888999999999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.018  Score=36.88  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+++|+|+|-++-++++.|.+.|.++.++.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            369999999999999999999999999998763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.45  E-value=0.012  Score=37.90  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +.+|-+||-|.-|...|.+|.++|++|.++|+.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4579999999999999999999999999999865

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.32  E-value=0.0098  Score=37.62  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ...++.|||+|..|..+|+.+..+++  .+.++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35679999999999999999999887  599998654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.30  E-value=0.02  Score=36.10  Aligned_cols=32  Identities=31%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|+.|+.++..+...|.+|.++++.+
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            49999999999998888888899999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.025  Score=35.88  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|+|+.|+.++..+...|.+|++++..+
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccch
Confidence            49999999999998887777899999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.24  E-value=0.0096  Score=38.61  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +|.|||+|.-|.+.|..|+++|.+|.+..+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            489999999999999999999999999865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.015  Score=37.05  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.++..+...|. +|+++|+.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            59999999999999998888998 689998764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.98  E-value=0.015  Score=36.65  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|+.+..+++  .+.++|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            368999999999999999999888  699998654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.96  E-value=0.015  Score=36.43  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ++.|||+|..|.++|+.+..+++ ++.++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999998887 788998654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.026  Score=34.03  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++.|+|||.-|...|....+.|+++.++|..+.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            345799999999999999999999999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.021  Score=35.66  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|+|.|..|..++..|.+.|.+++++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999998754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.019  Score=36.83  Aligned_cols=35  Identities=20%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+.++.|||+|..|..+|+.|..+++  .+.++|...
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34579999999999999999999887  699999763

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.90  E-value=0.019  Score=35.85  Aligned_cols=32  Identities=22%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|.++|+.+...++  .+.++|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            48999999999999999999886  699999765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.82  E-value=0.023  Score=35.63  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|+.+..+++  .+.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            369999999999999999999887  699998654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.61  E-value=0.016  Score=36.74  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|-+||-|.-|...|..|.++|++|.++|+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            38899999999999999999999999999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.58  E-value=0.02  Score=36.10  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|..+|+.|..+|+  .+.++|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            58999999999999999998886  688998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.02  Score=36.77  Aligned_cols=32  Identities=34%  Similarity=0.427  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.+...+...|. +|+++|+.+
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             EEEEECCCccchhheeccccccccccccccccc
Confidence            58999999999999888888898 689998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.48  E-value=0.024  Score=33.56  Aligned_cols=35  Identities=11%  Similarity=0.064  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-+|+|||+|..|.-+|..|++...+++++-+...
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            45799999999999999999988777766655543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.45  E-value=0.025  Score=36.17  Aligned_cols=32  Identities=38%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++-|||-|.-|...|.+|.++|++|.+.|+.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            48899999999999999999999999999753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.29  E-value=0.034  Score=35.18  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++.|||+|..|..+|+.+...++ ++.++|...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            479999999999999998888887 688999754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.025  Score=35.82  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|-+||-|.-|...|.+|.++|++|.++|+..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            48899999999999999999999999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.072  Score=34.21  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +++|+|+|-++-++++.|.+.|. ++.++.+..
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            69999999999999999999888 588888764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.23  E-value=0.023  Score=35.67  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|..+|+.+..++.  .+.++|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            58999999999999999998877  589998654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.21  E-value=0.028  Score=35.36  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=27.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+ |..|..+|+.|..+++  .+.++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899996 9999999999999888  588888765

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.19  E-value=0.021  Score=37.13  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|+..|..++ +|++|+.+|-.+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            4899999999999998776 599999999654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.02  E-value=0.032  Score=34.78  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+|..|..+|+.+..+++  .+.++|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            58999999999999999988876  688998654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.041  Score=34.78  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|+|+|+|..|+.+...+...|.++++++..+
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            59999999999998888888899988887654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.92  E-value=0.036  Score=34.86  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=27.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      ++.|||+ |..|..+|+.+..+++  .+.++|...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            4899996 9999999999999886  788988653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.037  Score=34.87  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~   64 (119)
                      .+.|||.|..|.+.|..|.+.|+  ++..+|+..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            48999999999999999999986  577788764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.84  E-value=0.055  Score=33.78  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+|+.|+.++..+...|.+|.+++..+
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            48999999999998888888899999998653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.043  Score=33.45  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .-+|+|||+|-.++-.|..|++-.-+|+++-+.+.+.+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~   64 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA   64 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccc
Confidence            45799999999999999999998889999988876543

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.048  Score=33.28  Aligned_cols=37  Identities=27%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      .-+|+|||+|...+-.|..|++-.-+|+++-+.+.+.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            4579999999999999999999888999998776554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.75  E-value=0.084  Score=33.52  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .+|+|+|+|-++-++++.|.+.|. ++.|+.|..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            369999999999999999999997 689997753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.73  E-value=0.037  Score=34.51  Aligned_cols=32  Identities=31%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.|||.|..|...|..|.++|+.+++.++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            48899999999999999999999999998654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.034  Score=37.40  Aligned_cols=61  Identities=25%  Similarity=0.208  Sum_probs=41.0

Q ss_pred             CchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419            3 ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      +++.++.+=.++--+.-.. .....+-....|+|+|+|-.|..+|..|++.|. +.+++|...
T Consensus         3 l~~~e~~ry~Rqi~l~~~g-~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_           3 LSDQEMLRYNRQIILRGFD-FDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CCHHHHHHTHHHHTSTTTH-HHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCHHHHHHhhceeccccCC-HHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4667766555543321100 001122356789999999999999999999999 688998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.66  E-value=0.039  Score=35.36  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -.|+|+|+|+.|+.++..+...|. +|+++|..+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            359999999999999888888897 688888754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.22  E-value=0.063  Score=33.04  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP   68 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~   68 (119)
                      .-+|+|||+|-..+-.|..|++-.-+|+++-+.+.+..
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            45799999999999999999998889999988876654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.08  E-value=0.056  Score=35.30  Aligned_cols=32  Identities=31%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.++..+...|. +|.++|..+
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            69999999999988888777777 688887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.99  E-value=0.066  Score=34.30  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.++..+...|.+ |++.|..+
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            599999999999999999999984 77777654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.91  E-value=0.071  Score=34.13  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -|+|+|+|+.|+.+...+...|. +|.++|..+
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            39999999999999999999985 799999754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.77  E-value=0.14  Score=34.84  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             EEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|+ +-.|..+|..|++.|.+|++.++..
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            444454 4478999999999999999999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.068  Score=34.40  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|-|..|-.+|..++..|.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.59  E-value=0.081  Score=35.08  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..+|+|.|| |..|..++..|.++|++|.++.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            457999997 8999999999999999999998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.52  E-value=0.0024  Score=42.82  Aligned_cols=36  Identities=14%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT   67 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g   67 (119)
                      ..++|+|+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            468999999999999999999999999999887654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.49  E-value=0.12  Score=32.89  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..++|+|+|-++-++++.|.+.+.++.++.|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            359999999999999999988788999998864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.28  E-value=0.091  Score=32.83  Aligned_cols=30  Identities=30%  Similarity=0.425  Sum_probs=26.3

Q ss_pred             cEEEEC-CChHHHHHHHHHHHcCC--cEEEEec
Q 033419           33 DVVIVG-SGCGGGVAAAVLASAGQ--KVVVIEK   62 (119)
Q Consensus        33 dv~iiG-~G~~G~~~a~~l~~~g~--~v~v~e~   62 (119)
                      ++.||| +|..|..+|+.+..+++  .+.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            589999 69999999999999887  5888883

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.025  Score=35.34  Aligned_cols=25  Identities=32%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCc
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQK   56 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~   56 (119)
                      -+++|||||..|+-+|..+.+.|..
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCc
Confidence            4799999999999999999998874

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.21  E-value=0.076  Score=34.18  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      --.++|+|-|-+|-.+|.+++..|.+|++.|..+
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            3479999999999999999999999999999886

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.1  Score=31.98  Aligned_cols=35  Identities=14%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             cccEEEECCChH-----------HHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCG-----------GGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~-----------G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ...++|+|+|+.           +..++..|++.|+++.++..++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            346999999983           66788889999999999988764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.11  Score=33.52  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|+|+|| |..|..++.+|.++|++|+++.|.+
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            5999995 9999999999999999999997754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.59  E-value=0.12  Score=34.47  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|.|| |..|...+.+|.++|++|+++.|..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            35999997 9999999999999999999987653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.50  E-value=0.12  Score=30.05  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             cccccccEEEECCChHHHHH-HHHHHHcCCcEEEEecCC
Q 033419           27 VYKIKCDVVIVGSGCGGGVA-AAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        27 ~~~~~~dv~iiG~G~~G~~~-a~~l~~~g~~v~v~e~~~   64 (119)
                      ++...-.+.+||-|-+|+++ |..|.++|+.|+-.|...
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            34455679999999889776 889999999999999874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.45  E-value=0.12  Score=32.87  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.+...+...|. +|.++|..+
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            49999999999999999888887 588887654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.31  E-value=0.13  Score=32.67  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=26.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -+++|+|+|-++-++++.|.+.| ++.|+.|.
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            46999999999999999987766 88999765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.13  Score=28.98  Aligned_cols=33  Identities=18%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .|.|+|+|--|...+....+.|+++.+++....
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            488999999999999999999999999997643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.14  Score=31.60  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             cccEEEECCChH-----------HHHHHHHHHHcCCcEEEEecCCc
Q 033419           31 KCDVVIVGSGCG-----------GGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~-----------G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .-.++|+|+|+.           +..++..|.+.|+++.++..++.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            356999999983           66678888999999999988765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.05  E-value=0.17  Score=32.50  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=28.3

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -.++|.| +|-.|..+|..|++.|.+|+++++..
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            3578888 47789999999999999999998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.88  E-value=0.13  Score=32.48  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCCcE-EEEecC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQKV-VVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~~v-~v~e~~   63 (119)
                      -.|+|+|+|+.|+.++..+...|.++ .+.|..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            35999999999999998888888865 455644

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.83  E-value=0.13  Score=31.99  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++.+||+|.-|.+.+..|.+++.++.+.++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            47899999999999999999999999998763

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.82  E-value=0.16  Score=32.02  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG   63 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~   63 (119)
                      ....++|||+|-.|..++..|...|. ++++..|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            34569999999999999999999998 58888775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.68  E-value=0.068  Score=32.58  Aligned_cols=39  Identities=18%  Similarity=0.037  Sum_probs=28.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHH-cCCc-EEEEecCCcccC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLAS-AGQK-VVVIEKGNYFTP   68 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~-~g~~-v~v~e~~~~~g~   68 (119)
                      .++.++|+|+|.+|...+..+.. .+++ +.++|-.+...|
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G   42 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG   42 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC
Confidence            46789999999999988876643 5776 556676554443

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.60  E-value=0.16  Score=32.73  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ..-+|+|||+|..|.-+|+.+++.+.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            34579999999999999999999988877665543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.29  E-value=0.15  Score=31.56  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~   64 (119)
                      ++.+||+|.-|.+.+..|.+.| .++.+.++.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            4889999999999999887776 7999998865

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.00  E-value=0.21  Score=32.13  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=26.9

Q ss_pred             cccccccEEEECC-ChHHHHHHHHHHHcCC-------cEEEEecC
Q 033419           27 VYKIKCDVVIVGS-GCGGGVAAAVLASAGQ-------KVVVIEKG   63 (119)
Q Consensus        27 ~~~~~~dv~iiG~-G~~G~~~a~~l~~~g~-------~v~v~e~~   63 (119)
                      ++.+..+|.|+|+ |..|..+++.|++...       ...++|..
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             ccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            3445668999996 9999999999987532       45566644

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.97  E-value=0.23  Score=31.11  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .|+|+|+|+.|+.++..++..+. +|+.+|+.+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            38899999999999988888776 588887654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=89.95  E-value=0.2  Score=34.32  Aligned_cols=41  Identities=24%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             CCceEEecCccccCCCcCCchhhhHHHHHHHHHHHHHHHhh
Q 033419           76 AEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLRE  116 (119)
Q Consensus        76 ~~~l~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~l~~~l~~  116 (119)
                      -.++|+.+.+++|.....||.++..+++.+..+.|.+.++.
T Consensus       335 ~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~  375 (379)
T d2f5va1         335 FKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTP  375 (379)
T ss_dssp             CSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhhcc
Confidence            46889999999999999999999999999999999887653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.75  E-value=0.4  Score=32.08  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ..-++++.|+|.+|+.+|..+.+.+. ++.++|+.-
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            34579999999999999999988777 688998763

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.57  E-value=0.25  Score=32.57  Aligned_cols=31  Identities=32%  Similarity=0.514  Sum_probs=24.9

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|++|+++++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            35556543 68999999999999999998764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.17  Score=36.96  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ...+|+|||+|-.|..++..|+..|+ +++++|...
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45689999999999999999999999 799999764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.50  E-value=0.21  Score=31.32  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=26.4

Q ss_pred             ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      -.++|+|+|+.|+.++..+...|. .+++.|+.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            359999999999998888877776 567777654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.24  Score=30.85  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=25.4

Q ss_pred             cEEEEC-CChHHHHHHHHHHH-cC--CcEEEEecCC
Q 033419           33 DVVIVG-SGCGGGVAAAVLAS-AG--QKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG-~G~~G~~~a~~l~~-~g--~~v~v~e~~~   64 (119)
                      ++.||| +|..|..+|+.|.. .+  -.+.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            589999 59999999998864 34  3688998654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.25  E-value=0.28  Score=30.75  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             EEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           34 VVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      |+|+|+|..|+.++..++..|. +|.+++..+
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            8999999999999999988876 788887654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.29  Score=32.39  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=25.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|.++++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46667655 68899999999999999999865

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.96  E-value=0.22  Score=32.81  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=27.5

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|+|.|+.- .|...|..|++.|++|.++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            588888865 58899999999999999998864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.82  E-value=0.17  Score=33.50  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|+|.|| |..|...+.+|.++|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            4899998 9999999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.50  E-value=0.27  Score=32.49  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHH--------------------cCC-cEEEEecCCc
Q 033419           31 KCDVVIVGSGCGGGVAAAVLAS--------------------AGQ-KVVVIEKGNY   65 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~--------------------~g~-~v~v~e~~~~   65 (119)
                      .-+|+|||+|.+++=||.-+.+                    .|. +|.++.++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            4579999999999999998877                    365 6999987653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.6  Score=29.85  Aligned_cols=50  Identities=14%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             hHHHHHHHhHcCcccccCCccccccccccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419            5 DSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +..|.+-+..+++++.          -.+++|||.+. .|..+|..|.++|..|+++....
T Consensus        23 p~aii~lL~~~~i~l~----------Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          23 PKGCLELIKETGVPIA----------GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             HHHHHHHHHTTTCCCT----------TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHHHhCcccc----------cceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            4456666666555432          34699999876 79999999999999999998754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.66  Score=29.58  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=37.9

Q ss_pred             hHHHHHHHhHcCcccccCCccccccccccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419            5 DSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +..|.+-+..++.++.          ..+++|||.+. .|...|..|.++|..|+++....
T Consensus        21 p~aI~~lL~~y~i~l~----------GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          21 PRGIVTLLERYNIDTF----------GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             HHHHHHHHHHTTCCCT----------TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             HHHHHHHHHHcCcccc----------cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            4456666666555433          34799999887 79999999999999999997664

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.06  E-value=0.4  Score=33.11  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|+|.|| |..|..++..|.++|++|+++++..
T Consensus        17 KILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          17 KISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            4899874 8899999999999999999998653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.62  E-value=0.35  Score=31.73  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ...|+|-|-|.+|..+|..|.+.|.+|++.|..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            346999999999999999999999999999865

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.50  E-value=0.37  Score=31.51  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=26.6

Q ss_pred             cccEEEECCChHHHHHHHHHH--------------------HcCC-cEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLA--------------------SAGQ-KVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~--------------------~~g~-~v~v~e~~~   64 (119)
                      .-+|+|||+|.+++=+|.-|.                    +.|. +|.++-+..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            357999999999999987665                    4566 588886653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.48  E-value=0.37  Score=31.34  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCCc
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ++|.|+.- .|..+|..|++.|++|.+.++...
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            55667643 688999999999999999997653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.36  E-value=0.33  Score=32.53  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -++|.|++. .|..+|..|++.|++|++.++..
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356667655 68999999999999999998864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.06  E-value=0.41  Score=32.20  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++..
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55556654 68899999999999999998754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.04  E-value=0.2  Score=31.27  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.4

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCC
Q 033419           31 KCDVVIVGS-GCGGGVAAAVLASAGQ   55 (119)
Q Consensus        31 ~~dv~iiG~-G~~G~~~a~~l~~~g~   55 (119)
                      ..+|.|+|+ |..|..+|+.|....+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            448999996 9999999999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.93  E-value=0.43  Score=31.87  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|...|..++++|.+|.+.++..
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44447665 68899999999999999999874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.43  Score=32.02  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=25.6

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|.+.++..
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            66666655 68999999999999999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.71  E-value=0.59  Score=32.04  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCCcEEEEecC
Q 033419           31 KCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +..|+|+|+ |..|..++..|.++|++|.++-|.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            456899996 999999999999999999998664

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.53  E-value=0.47  Score=31.57  Aligned_cols=32  Identities=25%  Similarity=0.464  Sum_probs=26.4

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            466667765 68899999999999999998864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.56  Score=31.46  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+.. .|..+|..|++.|.+|.++.+..
T Consensus        16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466777765 58999999999999999998763

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.27  Score=36.82  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      ....|+|||+|..|..+|..|+..|. +++|+|...
T Consensus        24 ~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          24 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            45689999999999999999999998 689998653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.33  E-value=0.41  Score=29.71  Aligned_cols=32  Identities=16%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQ-KVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~-~v~v~e~~~   64 (119)
                      .++|+|+ |+.|+.++..+...|. +|++++..+
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            4999994 9999988888877785 788888654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.24  E-value=0.49  Score=31.60  Aligned_cols=31  Identities=32%  Similarity=0.271  Sum_probs=25.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++..
T Consensus         8 ~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           8 ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            66777755 68899999999999999998763

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.20  E-value=0.49  Score=31.14  Aligned_cols=32  Identities=16%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+.- .|..+|..|+++|++|.++++..
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478888755 68999999999999999997754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.08  E-value=0.51  Score=31.51  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=25.2

Q ss_pred             EEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           35 VIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        35 ~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         5 lITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           5 LVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5567765 68999999999999999999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.03  E-value=0.5  Score=31.46  Aligned_cols=32  Identities=16%  Similarity=0.033  Sum_probs=26.7

Q ss_pred             cEEEECC-C--hHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-G--CGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G--~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+ |  -.|..+|..|++.|.+|++.++..
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4778885 3  379999999999999999999865

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=85.97  E-value=0.52  Score=31.60  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=25.6

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           8 CLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667655 68899999999999999998764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.87  E-value=0.57  Score=30.00  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ....+.|||.|..|-..|..+..-|.+|..+++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccc
Confidence            345699999999999999999999999999998654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.78  E-value=0.54  Score=31.24  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=26.1

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|++. .|..+|..|++.|++|.+.++..
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356667754 68899999999999999998763

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.63  E-value=0.55  Score=31.50  Aligned_cols=31  Identities=32%  Similarity=0.543  Sum_probs=25.7

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           7 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667765 68899999999999999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.45  E-value=0.53  Score=32.25  Aligned_cols=30  Identities=23%  Similarity=0.536  Sum_probs=26.2

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +++|.|| |..|..++..|.++|++|.++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            3788876 77899999999999999999975

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.57  Score=31.22  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|+.. .|..+|..|++.|.+|.+.++..
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45667654 68999999999999999998763

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.43  E-value=0.61  Score=31.01  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|.+.++..
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           8 AVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            55666654 68899999999999999998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.78  Score=30.43  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=24.9

Q ss_pred             cEEEE-CC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIV-GS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~ii-G~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++++| |+ +-.|..+|..|++.|++|++.++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34444 44 4468999999999999999999764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.35  E-value=0.61  Score=31.09  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|.+.++..
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56666544 68899999999999999999764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.34  E-value=0.58  Score=31.40  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=26.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            67777765 68899999999999999999764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.32  E-value=0.65  Score=30.13  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      ..-.+.|||.|..|..+|..+..-|.+|..+|+...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccc
Confidence            345799999999999999999999999999997543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.18  E-value=0.61  Score=30.91  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             cEEEECCC---hHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSG---CGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G---~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      -++|.|+.   -.|..+|.+|++.|.+|.+.++.+.
T Consensus        10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_          10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            37777753   2699999999999999999887643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.61  Score=29.04  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=25.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      .|+|.|+ |..|+.+...+...|.+|+.+...
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            4899996 999988887777789998887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.81  E-value=0.63  Score=30.59  Aligned_cols=32  Identities=22%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+.. .|..+|..|++.|++|.+.++..
T Consensus         6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            367777755 68999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.76  E-value=0.6  Score=30.86  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=25.5

Q ss_pred             ccEEEECC-Ch--HHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGS-GC--GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~-G~--~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ..++|.|+ |-  .|..+|..|++.|.+|.+.++.
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            34778884 33  6899999999999999998764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.68  E-value=0.51  Score=31.55  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            366667754 68899999999999999999764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.50  E-value=0.68  Score=31.52  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             ccEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -+|+|.| +|..|..++..|.++|++|..+++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3688998 47899999999999999999998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.49  E-value=0.62  Score=30.66  Aligned_cols=32  Identities=9%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             cEEEECCCh---HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC---GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~---~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+.-   .|..+|..|++.|.+|.+.++.+
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            466777643   57889999999999999998764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.48  E-value=0.7  Score=31.04  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=27.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|+|.|+ |..|..++.+|.++|++|..+++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4778876 8899999999999999999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.34  E-value=0.48  Score=31.71  Aligned_cols=31  Identities=32%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++.+
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34445544 68899999999999999998763

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.66  Score=31.80  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=25.3

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -++|.|++- .|..+|..|++.|.+|.+.++.
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            356666654 6888999999999999999875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=84.10  E-value=0.69  Score=30.95  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=25.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus        11 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          11 ALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667754 68899999999999999998763

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.08  E-value=0.55  Score=31.35  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++..
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44446643 68889999999999999999764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.05  E-value=0.52  Score=31.58  Aligned_cols=32  Identities=31%  Similarity=0.465  Sum_probs=24.7

Q ss_pred             cEEEE-CCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIV-GSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~ii-G~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++++| |++. .|..+|..|++.|.+|.+.++..
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34444 5543 68889999999999999998763

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=83.98  E-value=0.8  Score=30.86  Aligned_cols=32  Identities=28%  Similarity=0.448  Sum_probs=26.1

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      -++|.|+.- .|..+|..|++.|.+|.++++..
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356667644 68999999999999999998864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.91  E-value=0.6  Score=32.15  Aligned_cols=31  Identities=35%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|++.++..
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            44556655 58889999999999999987643

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.80  E-value=0.79  Score=29.68  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +...|+|||-|..|-+-|..|+..|++|+|==+
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr   47 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLR   47 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcC
Confidence            345799999999999999999999999887543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.74  E-value=0.6  Score=30.94  Aligned_cols=34  Identities=32%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCCcc
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGNYF   66 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~~~   66 (119)
                      .++|.|++. .|..+|..|++.|.+|.+.++....
T Consensus         9 ~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           9 SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            366666654 6889999999999999999987643

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.55  E-value=0.66  Score=29.00  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .|+|.|+ |+.|+.+...+...|.+|..++..+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccc
Confidence            3777785 8889888877777899988887654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.54  E-value=0.78  Score=29.78  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....+.|||-|..|..+|..+..-|.+|..+|+..
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            45679999999999999999998999999998653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.77  Score=30.65  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=25.6

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           9 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667644 68899999999999999999764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.61  Score=30.96  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|++|.+.++..
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            44446554 68889999999999999998874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.38  E-value=0.9  Score=30.07  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         8 ~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           8 VLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667654 68999999999999999999764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.35  E-value=0.81  Score=30.46  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=25.4

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++..
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           9 ALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55557654 68899999999999999999764

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.76  Score=31.17  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +|+|.|+ |..|...+..|.++|++|+.+++
T Consensus         3 KIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            4788876 77899999999999999999975

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.16  E-value=0.58  Score=31.50  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=24.9

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.+.++..
T Consensus         8 alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           8 VIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55556644 68889999999999999998763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.85  E-value=0.77  Score=31.97  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=25.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEe
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIE   61 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e   61 (119)
                      +|+|.|+ |..|..++..|.++|++|.++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            4788776 7899999999999999999997

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.83  E-value=0.95  Score=30.28  Aligned_cols=32  Identities=28%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             ccEEEECCC---hHHHHHHHHHHHcCCcEEEEecC
Q 033419           32 CDVVIVGSG---CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        32 ~dv~iiG~G---~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      -.++|.|++   -.|..+|..|++.|.+|++.++.
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            357888864   37999999999999999998754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.78  E-value=0.83  Score=28.22  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCc-EEEEecC
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQK-VVVIEKG   63 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~   63 (119)
                      .|+|+|+|..|+.+...+...|.+ |.+.+..
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            489999999999998888888874 6666554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.50  E-value=0.68  Score=31.09  Aligned_cols=31  Identities=39%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus        10 alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_          10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44445533 68889999999999999998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.50  E-value=0.88  Score=30.25  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             EEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           35 VIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        35 ~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +|-|+.. .|..+|..|++.|++|.+.++..
T Consensus         6 lITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           6 LVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             EEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4556654 68999999999999999998763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.49  E-value=0.64  Score=31.36  Aligned_cols=31  Identities=32%  Similarity=0.512  Sum_probs=24.6

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++. .|..+|..|++.|.+|.+.++..
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45556544 58889999999999999998763

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=82.28  E-value=0.86  Score=29.44  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .-.+.|||.|..|-..|..+..-|++|...++..
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCcc
Confidence            3469999999999999999999999999998754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.26  E-value=1.1  Score=29.85  Aligned_cols=30  Identities=23%  Similarity=0.088  Sum_probs=24.3

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      ++|.|+.- .|..+|..|++.|.+|+++.+.
T Consensus         8 vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             EEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            66667654 6899999999999999888554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.22  E-value=1.1  Score=28.66  Aligned_cols=35  Identities=17%  Similarity=0.055  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ....+.|+|.|..|...|..+..-|.+|..+++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            35679999999999999999999999999999753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.11  E-value=0.95  Score=29.88  Aligned_cols=31  Identities=19%  Similarity=0.483  Sum_probs=26.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|++|.+..+..
T Consensus         8 alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           8 ILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56667765 68999999999999999998765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.10  E-value=0.72  Score=28.94  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=24.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHHcCCcEEEEe
Q 033419           32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIE   61 (119)
Q Consensus        32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e   61 (119)
                      ..|+|.|+ |..|..++..|.++|++|.+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            46899995 9999999999999998765543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=1  Score=30.66  Aligned_cols=30  Identities=33%  Similarity=0.453  Sum_probs=26.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +|+|.|| |..|...+..|.++|+.|+.+|+
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6888876 88999999999999999999985

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.06  E-value=0.7  Score=30.97  Aligned_cols=31  Identities=16%  Similarity=0.225  Sum_probs=24.8

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|++- .|..+|..|++.|.+|.++++..
T Consensus        11 alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_          11 VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55556544 68889999999999999998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.84  E-value=0.28  Score=30.53  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=24.8

Q ss_pred             cccEEEECC-ChHHHHHHHHHHHcCC-------cEEEEecC
Q 033419           31 KCDVVIVGS-GCGGGVAAAVLASAGQ-------KVVVIEKG   63 (119)
Q Consensus        31 ~~dv~iiG~-G~~G~~~a~~l~~~g~-------~v~v~e~~   63 (119)
                      +.+|.|||+ |..|..+|+.|...++       ...++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            347999995 9999999999986543       35566644

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=81.84  E-value=0.98  Score=30.22  Aligned_cols=30  Identities=27%  Similarity=0.460  Sum_probs=25.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHHcCCcEEEEec
Q 033419           33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEK   62 (119)
Q Consensus        33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~   62 (119)
                      +|+|.|| |..|..+...|.++|++|+.+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            4777765 88999999999999999999974

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.74  E-value=0.52  Score=28.00  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419           33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY   65 (119)
Q Consensus        33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~   65 (119)
                      .++|+|.|..|..++..|.  +..+.++|..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            3899999999999999884  556788887653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.73  E-value=1.2  Score=29.57  Aligned_cols=30  Identities=27%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             EEEE-CCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419           34 VVIV-GSG-CGGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus        34 v~ii-G~G-~~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      |++| |++ -.|..+|..|++.|.+|.+.++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            5555 554 47899999999999999998654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.60  E-value=0.74  Score=30.63  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|+.- .|..+|..|++.|.+|.+.++..
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44445543 58889999999999999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=0.81  Score=30.54  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             cccEEEE-CCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           31 KCDVVIV-GSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        31 ~~dv~ii-G~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      +-++++| |++- .|..+|..|++.|++|.+.++..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3344444 5543 68889999999999999998763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.56  E-value=0.99  Score=30.13  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             cEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .++|.|+.- .|..+|..|++.|.+|.+.++..
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            377777654 68899999999999999999864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.53  E-value=0.79  Score=30.07  Aligned_cols=31  Identities=32%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .+|-|++- .|..+|..|++.|++|++.++..
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            35556654 68999999999999999999764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.84  E-value=1.9  Score=29.45  Aligned_cols=37  Identities=43%  Similarity=0.645  Sum_probs=30.6

Q ss_pred             CCceEEecCccccCCCcCCchhhhHHHHHHHHHHHHH
Q 033419           76 AEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAE  112 (119)
Q Consensus        76 ~~~l~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~l~~  112 (119)
                      .+++++.+++..|.....||.+++.+++.+.-.+|..
T Consensus       331 ~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~  367 (370)
T d3coxa1         331 YPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIIS  367 (370)
T ss_dssp             STTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEeecccccCccCcCchhhHHHHHHHHHHHHHh
Confidence            4677888999999888899999999998776666654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.77  E-value=0.57  Score=31.18  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=25.9

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|-|++. .|..+|..|++.|.+|.+.++..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~   34 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESF   34 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56777765 69999999999999999998753

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.63  E-value=2.1  Score=27.17  Aligned_cols=58  Identities=17%  Similarity=0.118  Sum_probs=37.8

Q ss_pred             hHHHHHHHhHcCcccccCCccccccccccEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419            5 DSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG   63 (119)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~   63 (119)
                      +..|.+-+..++........ ...-.-.+++|||.+. .|...|..|.++|..|+++...
T Consensus         4 p~gv~~LL~~y~I~~~~~~~-g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1           4 PLAIVKILEFLKIYNNLLPE-GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             HHHHHHHHHHTTCSCTTSCT-TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             HHHHHHHHHHcCcccccccc-cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            44566666665542221111 0113345799999765 7999999999999999988643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.50  E-value=0.78  Score=30.60  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             EEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419           34 VVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        34 v~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      ++|.|+.. .|..+|..|++.|.+|.+.++..
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44446543 68889999999999999998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.66  Score=32.26  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHHc----CC-------cEEEEecCC
Q 033419           30 IKCDVVIVGSGCGGGVAAAVLASA----GQ-------KVVVIEKGN   64 (119)
Q Consensus        30 ~~~dv~iiG~G~~G~~~a~~l~~~----g~-------~v~v~e~~~   64 (119)
                      ...++++.|+|.+|+.+|..+...    |+       ++.++|+.-
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            455799999999999999876543    43       499999864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=1.4  Score=29.80  Aligned_cols=32  Identities=31%  Similarity=0.410  Sum_probs=26.6

Q ss_pred             cE-EEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419           33 DV-VIVGS-GCGGGVAAAVLASAGQKVVVIEKGN   64 (119)
Q Consensus        33 dv-~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~   64 (119)
                      .| +|.|| |..|..++..|.++|++|..+++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            36 67665 7899999999999999999998753