Citrus Sinensis ID: 033436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNfglryddlydpyydlDIKEALDRLPREIVDARNQRLKRAMDlsmkheylpedlqAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Flexible Loop (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Low Complexity Region (SEG)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRyddlydpyydldIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Disordered region (IsUnstruct)
************KNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARN********L*MKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCA***
Disordered Region (DISOPRED)
******SLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCAS**
Disordered Region (DISEMBL)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Disordered Region (DISPRO)
*ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVSILEIYIYVYRFYCASFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9SUU5	122	Cytochrome b-c1 complex s	yes	no	0.857	0.836	0.794	3e-42
F4JWS8	122	Cytochrome b-c1 complex s	no	no	0.857	0.836	0.803	4e-42
P48502	123	Cytochrome b-c1 complex s	N/A	no	0.840	0.813	0.82	2e-41
Q5RC24	111	Cytochrome b-c1 complex s	yes	no	0.420	0.450	0.480	7e-05
P14927	111	Cytochrome b-c1 complex s	yes	no	0.420	0.450	0.461	0.0002
Q9D855	111	Cytochrome b-c1 complex s	yes	no	0.470	0.504	0.410	0.0003

>sp|Q9SUU5|QCR71_ARATH Cytochrome b-c1 complex subunit 7-1 OS=Arabidopsis thaliana GN=QCR7-1 PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MASLL++ +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV 
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVE 102

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.
Arabidopsis thaliana (taxid: 3702)

>sp|F4JWS8|QCR72_ARATH Cytochrome b-c1 complex subunit 7-2 OS=Arabidopsis thaliana GN=QCR7-2 PE=1 SV=1

 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 93/102 (91%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALV 
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVK 102

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Arabidopsis thaliana (taxid: 3702)

>sp|P48502|QCR7_SOLTU Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/100 (82%), Positives = 92/100 (92%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +S  + L+DPKKN LAA HMKT+S RLRN+GLR+DDLYDP YDLD+KEAL+RLPREIVDA
Sbjct: 3   SSFSRWLVDPKKNPLAAIHMKTLSSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           RNQRL RAMDLSMKH+YLPEDLQAMQTPFRNYLQ+MLALV
Sbjct: 63  RNQRLLRAMDLSMKHQYLPEDLQAMQTPFRNYLQEMLALV 102

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Solanum tuberosum (taxid: 4113)

>sp|Q5RC24|QCR7_PONAB Cytochrome b-c1 complex subunit 7 OS=Pongo abelii GN=UQCRB PE=3 SV=3

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 31 FGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
           GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DLS+KH+ LP++
Sbjct: 30 LGLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLSLKHQILPKE 79

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Pongo abelii (taxid: 9601)

>sp|P14927|QCR7_HUMAN Cytochrome b-c1 complex subunit 7 OS=Homo sapiens GN=UQCRB PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 31 FGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
           GL  DD    Y D D+KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct: 30 LGLMRDDTI--YEDEDVKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 79

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Homo sapiens (taxid: 9606)

>sp|Q9D855|QCR7_MOUSE Cytochrome b-c1 complex subunit 7 OS=Mus musculus GN=Uqcrb PE=1 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 46  DIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           D+KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D        + YL+  L  V
Sbjct: 43  DVKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKDQWTKYEEDKFYLEPYLKEV 98

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This component is involved in redox-linked proton pumping.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
224089146	122	predicted protein [Populus trichocarpa]	0.848	0.827	0.861	7e-45
224141859	118	predicted protein [Populus trichocarpa]	0.840	0.847	0.87	1e-44
118481517	122	unknown [Populus trichocarpa]	0.848	0.827	0.851	2e-44
324331821	123	ubiquinol-cytochrome C reductase complex	0.840	0.813	0.84	6e-43
225430198	122	PREDICTED: cytochrome b-c1 complex subun	0.857	0.836	0.823	1e-41
297808563	122	predicted protein [Arabidopsis lyrata su	0.857	0.836	0.813	2e-41
297798716	122	hypothetical protein ARALYDRAFT_913201 [	0.857	0.836	0.803	5e-41
15236811	122	ubiquinol-cytochrome c reductase subunit	0.857	0.836	0.794	1e-40
15239430	122	ubiquinol-cytochrome c reductase subunit	0.857	0.836	0.803	1e-40
338173927	122	ubiquinol-cytochrome C reductase complex	0.857	0.836	0.794	2e-40

>gi|224089146|ref|XP_002308646.1| predicted protein [Populus trichocarpa] gi|222854622|gb|EEE92169.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 96/101 (95%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQSL+DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSLIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           ARNQRLKRAMDLSMKH+YLPEDLQAMQTPFR+YLQ+MLA V
Sbjct: 61  ARNQRLKRAMDLSMKHDYLPEDLQAMQTPFRSYLQEMLAFV 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141859|ref|XP_002324279.1| predicted protein [Populus trichocarpa] gi|222865713|gb|EEF02844.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/100 (87%), Positives = 95/100 (95%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQSL+DP+KNWLA QHMKT+S RLR +GLRYDDLYDPYY+LDIKEAL+RLPREIVD
Sbjct: 1   MASFLQSLVDPRKNWLAKQHMKTLSSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLAL 100
           ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFR+YLQ+ML L
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRSYLQEMLTL 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481517|gb|ABK92701.1| unknown [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 94/101 (93%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQS +DP+KNWLA QHMKTIS RLR +GLRYDDLYDPYY+LDIKEAL+RLPREI+D
Sbjct: 1   MASFLQSFIDPRKNWLAKQHMKTISSRLRRYGLRYDDLYDPYYELDIKEALNRLPREIID 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           ARNQRLKRAMDLSMKH YLPEDLQAMQTPFR+YLQ+MLA V
Sbjct: 61  ARNQRLKRAMDLSMKHAYLPEDLQAMQTPFRSYLQEMLAFV 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331821|gb|ADY38691.1| ubiquinol-cytochrome C reductase complex [Camellia sinensis]

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 96/100 (96%)

Query: 2   ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDA 61
           +SL++ L+DPKKNW AAQHMK+ISKRLR +GLRYDDL+DPYYDLD+KEAL+RLPREIVDA
Sbjct: 3   SSLMKWLVDPKKNWFAAQHMKSISKRLRRYGLRYDDLFDPYYDLDVKEALNRLPREIVDA 62

Query: 62  RNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           RNQRLKRAMDLSMKH+YLPE LQAMQTP+R+YLQDMLALV
Sbjct: 63  RNQRLKRAMDLSMKHDYLPEHLQAMQTPYRSYLQDMLALV 102

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430198|ref|XP_002284960.1| PREDICTED: cytochrome b-c1 complex subunit 7 [Vitis vinifera] gi|296081993|emb|CBI20998.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 93/102 (91%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           M SL++ L+DPKKNW A QHMKTIS RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MESLMKWLVDPKKNWFARQHMKTISTRLRKYGLRYDDLYDPKYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           AR+QRLKRA+DLSMKHEYL EDLQAMQTPFR+YLQ+MLALV 
Sbjct: 61  ARHQRLKRAIDLSMKHEYLAEDLQAMQTPFRSYLQEMLALVK 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808563|ref|XP_002872165.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318002|gb|EFH48424.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 94/102 (92%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRLKRAMDLSMKHEYLP++LQAMQTPFR+YLQD+LALV 
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPDNLQAMQTPFRSYLQDILALVK 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798716|ref|XP_002867242.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata] gi|297313078|gb|EFH43501.1| hypothetical protein ARALYDRAFT_913201 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 92/102 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MASLL+S +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1   MASLLKSFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV 
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVE 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236811|ref|NP_194973.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana] gi|75209343|sp|Q9SUU5.1|QCR71_ARATH RecName: Full=Cytochrome b-c1 complex subunit 7-1; AltName: Full=Complex III subunit VII gi|11692914|gb|AAG40060.1|AF324709_1 AT4g32470 [Arabidopsis thaliana] gi|11908054|gb|AAG41456.1|AF326874_1 putative ubiquinol-cytochrome c reductase [Arabidopsis thaliana] gi|12642870|gb|AAK00377.1|AF339695_1 putative ubiquinol-cytochrome c reductase [Arabidopsis thaliana] gi|13605716|gb|AAK32851.1|AF361839_1 AT4g32470/F8B4_170 [Arabidopsis thaliana] gi|4049349|emb|CAA22574.1| ubiquinol-cytochrome c reductase-like protein [Arabidopsis thaliana] gi|7270151|emb|CAB79964.1| ubiquinol-cytochrome c reductase-like protein [Arabidopsis thaliana] gi|17978895|gb|AAL47417.1| AT4g32470/F8B4_170 [Arabidopsis thaliana] gi|21592933|gb|AAM64883.1| ubiquinol-cytochrome c reductase-like protein [Arabidopsis thaliana] gi|332660665|gb|AEE86065.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MASLL++ +DPKKN+LA  HMK IS RLR +GLRYDDLYD YY +DIKEA++RLPRE+VD
Sbjct: 1   MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV 
Sbjct: 61  ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVE 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239430|ref|NP_197927.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana] gi|403399498|sp|F4JWS8.1|QCR72_ARATH RecName: Full=Cytochrome b-c1 complex subunit 7-2; AltName: Full=Complex III subunit VII gi|332006061|gb|AED93444.1| ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 93/102 (91%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MAS LQ L+DP+KN+LA  HMK++S RLR +GLRYDDLYDP YDLDIKEAL+RLPREIVD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALV 
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVK 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173927|gb|AEI83504.1| ubiquinol-cytochrome C reductase complex 14kD subunit [Wolffia arrhiza]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 92/102 (90%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
           MA  ++ L+DP +NWLAAQH K IS+RLR +GLRYDDLYDP +DLDIKEAL RLPREIVD
Sbjct: 1   MAGFMRWLVDPSRNWLAAQHCKAISRRLRKYGLRYDDLYDPLHDLDIKEALARLPREIVD 60

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVS 102
           ARNQRLKRAMDLSMKH+YLPEDLQA+QTPFR+YL+DMLALV 
Sbjct: 61  ARNQRLKRAMDLSMKHDYLPEDLQALQTPFRSYLRDMLALVK 102

Source: Wolffia arrhiza

Species: Wolffia arrhiza

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2127846	122	AT4G32470 [Arabidopsis thalian	0.848	0.827	0.712	2.5e-33
TAIR|locus:2145527	122	AT5G25450 [Arabidopsis thalian	0.848	0.827	0.702	2.3e-32
UNIPROTKB|F1P3M8	108	UQCRB "Cytochrome b-c1 complex	0.436	0.481	0.423	1.6e-06
ZFIN|ZDB-GENE-050522-542	111	uqcrb "ubiquinol-cytochrome c	0.302	0.324	0.611	1.6e-06
MGI|MGI:1914780	111	Uqcrb "ubiquinol-cytochrome c	0.436	0.468	0.403	3.4e-06
RGD|1311971	111	Uqcrb "ubiquinol-cytochrome c	0.436	0.468	0.423	3.4e-06
UNIPROTKB|F1PLP2	106	UQCRB "Cytochrome b-c1 complex	0.436	0.490	0.384	1.9e-05
UNIPROTKB|P00129	111	UQCRB "Cytochrome b-c1 complex	0.436	0.468	0.384	3e-05
UNIPROTKB|P14927	111	UQCRB "Cytochrome b-c1 complex	0.436	0.468	0.384	3e-05
UNIPROTKB|B7Z2R2	161	UQCRB "cDNA FLJ52271, moderate	0.302	0.223	0.472	3.9e-05

TAIR|locus:2127846 AT4G32470 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MASLL++ +DPKKN+LA  HMK IS RLR +GLR            IKEA++RLPRE+VD
Sbjct:     1 MASLLKAFIDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPREVVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
             ARNQRLKRAMDLSMKHEYLP+DLQA+QTPFR YLQDMLALV
Sbjct:    61 ARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALV 101

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2145527 AT5G25450 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 71/101 (70%), Positives = 82/101 (81%)

Query:     1 MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRXXXXXXXXXXXXIKEALDRLPREIVD 60
             MAS LQ L+DP+KN+LA  HMK++S RLR +GLR            IKEAL+RLPREIVD
Sbjct:     1 MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query:    61 ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
             ARNQRL RAMDLSMKHEYLP++LQA+QTPFR+YLQDMLALV
Sbjct:    61 ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALV 101

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA;ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

UNIPROTKB|F1P3M8 UQCRB "Cytochrome b-c1 complex subunit 7" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/52 (42%), Positives = 34/52 (65%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++        + YL+  L
Sbjct:    41 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYL 92

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

ZFIN|ZDB-GENE-050522-542 uqcrb "ubiquinol-cytochrome c reductase binding protein" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/36 (61%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  RLKRAMDLSMKH+ LP+D
Sbjct:    44 VKEAVRRLPEPLYNERVFRLKRAMDLSMKHQILPKD 79

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:1914780 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEA+ RLP ++ + R  R+KRA+DL+M+H+ LP+D        + YL+  L
Sbjct:    44 VKEAIRRLPEDLYNDRMLRIKRALDLTMRHQILPKDQWTKYEEDKFYLEPYL 95

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

RGD|1311971 Uqcrb "ubiquinol-cytochrome c reductase binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEA+ RLP  + + R  R+KRA+DLSM+H+ LP+D        + YL+  L
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLSMRHQILPKDQWTKYEEDKFYLEPYL 95

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|F1PLP2 UQCRB "Cytochrome b-c1 complex subunit 7" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEA+ RLP  + + R  R+KRA+DL+M+H+ LP++        + YL+  L
Sbjct:    39 VKEAIRRLPENLYNDRMFRIKRALDLTMRHQILPKEQWTKYEEDKFYLEPYL 90

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|P00129 UQCRB "Cytochrome b-c1 complex subunit 7" [Bos taurus (taxid:9913)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEA+ RLP  + + R  R+KRA+DLSM+ + LP++        ++YL+  L
Sbjct:    44 VKEAIRRLPENLYNDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYL 95

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|P14927 UQCRB "Cytochrome b-c1 complex subunit 7" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDML 98
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++          YL+  L
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYL 95

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|B7Z2R2 UQCRB "cDNA FLJ52271, moderately similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein (EC 1.10.2.2)" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 17/36 (47%), Positives = 28/36 (77%)

Query:    47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
             +KEA+ RLP  + + R  R+KRA+DL++KH+ LP++
Sbjct:    44 VKEAIRRLPENLYNDRMFRIKRALDLNLKHQILPKE 79

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JWS8	QCR72_ARATH	No assigned EC number	0.8039	0.8571	0.8360	no	no
P48502	QCR7_SOLTU	No assigned EC number	0.82	0.8403	0.8130	N/A	no
Q9SUU5	QCR71_ARATH	No assigned EC number	0.7941	0.8571	0.8360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam02271	105	pfam02271, UCR_14kD, Ubiquinol-cytochrome C reduct	9e-23

>gnl|CDD|202184 pfam02271, UCR_14kD, Ubiquinol-cytochrome C reductase complex 14kD subunit

 Score = 85.0 bits (211), Expect = 9e-23
 Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 5   LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQ 64
           L  LL P   W    +        R  GLRYDDL     + D++EAL RLPRE   AR  
Sbjct: 7   LSKLLKPLAKW----YFNA--SGYRQLGLRYDDLIPEE-NPDVQEALRRLPREESYARVF 59

Query: 65  RLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           R+KRAM LS+ H+ LP++          YL   +  V
Sbjct: 60  RIKRAMQLSLSHQLLPKEEWTKPEEDVPYLSPYILEV 96

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PF02271	105	UCR_14kD: Ubiquinol-cytochrome C reductase complex	100.0
KOG3440	122	consensus Ubiquinol cytochrome c reductase, subuni	100.0

>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []

Probab=100.00  E-value=1.5e-44  Score=260.47  Aligned_cols=93  Identities=39%  Similarity=0.497  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhcccCC
Q 033436           10 DPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTP   89 (119)
Q Consensus        10 ~p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~ee   89 (119)
                      ..+..|+++||+|++  ||||+||+||||++| +||+|+|||+|||+++.++|+|||+||+|||++|++||||||||+++
T Consensus         8 ~~~~~~~~~w~~n~~--gyrk~GL~~DDl~~e-~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~   84 (105)
T PF02271_consen    8 SKFFKPLAKWYYNAS--GYRKYGLRYDDLLNE-EDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPKEQWTKPEE   84 (105)
T ss_dssp             HHHHHHHHHHHHHHH--GGGGGT--GGGGS----SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----GGGS--GGG
T ss_pred             HHHHHHHHHHHHHhc--chhhhcccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCccc
Confidence            334556669999977  699999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHhhh
Q 033436           90 FRNYLQDMLALVSILE  105 (119)
Q Consensus        90 d~~YL~P~i~ev~~e~  105 (119)
                      |++||+|||+||++|.
T Consensus        85 d~~YL~p~i~ev~~E~  100 (105)
T PF02271_consen   85 DVPYLQPYIEEVEKER  100 (105)
T ss_dssp             S--SSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            9999999999999986

Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....

>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]

Probab=100.00  E-value=1.7e-42  Score=254.95  Aligned_cols=102  Identities=45%  Similarity=0.538  Sum_probs=90.9

Q ss_pred             ChHHHHHHHh--hHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccC
Q 033436            1 MASLLQSLLD--PKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEY   78 (119)
Q Consensus         1 ~~~~L~~~~~--p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~   78 (119)
                      |++.++++..  .++.++.+|++|++  |||||||+||||+.| +|++|+|||+|||++++|+|++||+|||||||+|++
T Consensus         2 ma~~~~~~~~~~k~~~~~~~~~~nl~--g~rkyGL~~DDl~~e-~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~   78 (122)
T KOG3440|consen    2 MASYIQKSPVLGKLFLPLRKWAYNLS--GFRKYGLRYDDLYYE-ENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEI   78 (122)
T ss_pred             hhhhHHHcccchHHHHHHHHHHHHHh--hhhhhCccccccccc-cCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhccc
Confidence            4444333332  35566778999998  699999999999999 799999999999999999999999999999999999


Q ss_pred             CChhhhcccCCCCcChHHHHHHHHhhh
Q 033436           79 LPEDLQAMQTPFRNYLQDMLALVSILE  105 (119)
Q Consensus        79 LPkeqwtk~eed~~YL~P~i~ev~~e~  105 (119)
                      |||+||||++||++||+|||.||++|.
T Consensus        79 LPk~ewtk~eed~~YL~pyL~ev~~Er  105 (122)
T KOG3440|consen   79 LPKEEWTKYEEDVKYLEPYLAEVEAER  105 (122)
T ss_pred             CCHHHhhcccchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
3cwb_F	110	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		4e-05
3h1h_F	110	Cytochrome Bc1 Complex From Chicken Length = 110		8e-05
1qcr_F	103	Crystal Structure Of Bovine Mitochondrial Cytochrom		2e-04
1bgy_F	110	Cytochrome Bc1 Complex From Bovine Length = 110		2e-04
1sqp_F	110	Crystal Structure Analysis Of Bovine Bc1 With Myxot		2e-04

>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           +KEAL RLP+++ + R  R+KRA+DLS+KH  LP++        + YL+  L  V
Sbjct: 43  VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEV 97

>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           +KEAL RLP ++ + R  R+KRA+DLS+KH  LP++        + YL+  L  V
Sbjct: 43  VKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEV 97

>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 103

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V
Sbjct: 36  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEV 90

>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V
Sbjct: 43  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEV 97

>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol Length = 110

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 47  IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           +KEA+ RLP  + D R  R+KRA+DLSM+ + LP++        ++YL+  L  V
Sbjct: 43  VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEV 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	2e-24
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	2e-24

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G* Length = 126

 Score = 89.5 bits (222), Expect = 2e-24
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 4   LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARN 63
           +L  L  P  N              +  GL++DDL        ++ AL RLP +   AR 
Sbjct: 19  VLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESYARA 71

Query: 64  QRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
            R+ RA    + H  LP +          YL   +   
Sbjct: 72  YRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEA 109

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ... Length = 110

 Score = 88.7 bits (220), Expect = 2e-24
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 3   SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDAR 62
           S     L+  + W         +      GL  DD    + + D+KEA+ RLP  + D R
Sbjct: 7   SASSRWLEGIRKWYYN------AAGFNKLGLMRDDTI--HENDDVKEAIRRLPENLYDDR 58

Query: 63  NQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
             R+KRA+DLSM+ + LP++        ++YL+  L  V
Sbjct: 59  VFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEV 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3cx5_G	126	Cytochrome B-C1 complex subunit 7; complex III, el	100.0
1pp9_F	110	Ubiquinol-cytochrome C reductase complex 14 kDa P;	100.0

>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*

Probab=100.00  E-value=1.3e-44  Score=266.85  Aligned_cols=95  Identities=24%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             HHhhHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhccc
Q 033436            8 LLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQ   87 (119)
Q Consensus         8 ~~~p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~   87 (119)
                      ++..+.+|+++||+|++  ||||+||+||||++| ++|+|+|||+|||+++.++|+|||+||+|||++|++||||||||+
T Consensus        19 ~l~~~~~p~~~w~~~~~--g~rk~GL~~DDl~~e-~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~   95 (126)
T 3cx5_G           19 VLSKLCVPVANQFINLA--GYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKA   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHHH--CGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCG
T ss_pred             HHHHHHHHHHHHHHHHH--HHHhccccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHccCC
Confidence            33455667779999997  699999999999999 899999999999999999999999999999999999999999999


Q ss_pred             CCCCcChHHHHHHHHhhh
Q 033436           88 TPFRNYLQDMLALVSILE  105 (119)
Q Consensus        88 eed~~YL~P~i~ev~~e~  105 (119)
                      |||++||+|||+||++|.
T Consensus        96 e~d~~YL~p~i~ev~~E~  113 (126)
T 3cx5_G           96 QEDVPYLLPYILEAEAAA  113 (126)
T ss_dssp             GGCCCSSHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHH
Confidence            999999999999999985

>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...

Probab=100.00  E-value=3.3e-44  Score=259.74  Aligned_cols=91  Identities=30%  Similarity=0.388  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhcccCCC
Q 033436           11 PKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPF   90 (119)
Q Consensus        11 p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~eed   90 (119)
                      .+..|+++||+|++  ||||+||+||||++|  +++|+|||+|||+++.++|+|||+||+|||++|++||||||||+|||
T Consensus        11 ~~~~~~~~w~~n~s--g~rk~GL~~DDl~~e--~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d   86 (110)
T 1pp9_F           11 RWLEGIRKWYYNAA--GFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEED   86 (110)
T ss_dssp             -CHHHHHHHHHHHH--CGGGGTCCGGGGSCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGC
T ss_pred             HHHHHHHHHHHHHH--HHHHhcccHHhccCC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCCccc
Confidence            45678889999988  599999999999999  68999999999999999999999999999999999999999999999


Q ss_pred             CcChHHHHHHHHhhh
Q 033436           91 RNYLQDMLALVSILE  105 (119)
Q Consensus        91 ~~YL~P~i~ev~~e~  105 (119)
                      ++||+|||+||++|.
T Consensus        87 ~~YL~p~i~ev~~E~  101 (110)
T 1pp9_F           87 KSYLEPYLKEVIRER  101 (110)
T ss_dssp             CCSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d3cx5g1	125	f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc	1e-25
d1ppjf_	99	f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 com	2e-25

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (226), Expect = 1e-25
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 1   MASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVD 60
            + +L  L  P  N              +  GL++DDL        ++ AL RLP +   
Sbjct: 15  KSPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAEENP-IMQTALRRLPEDESY 67

Query: 61  ARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           AR  R+ RA    + H  LP +          YL   +   
Sbjct: 68  ARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEA 108

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 99

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.8 bits (223), Expect = 2e-25
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 9   LDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKR 68
           L+  + W         +      GL  DD      + D+KEA+ RLP  + D R  R+KR
Sbjct: 2   LEGIRKWYYN------AAGFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKR 53

Query: 69  AMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALV 101
           A+DLSM+ + LP++        ++YL+  L  V
Sbjct: 54  ALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEV 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d3cx5g1	125	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0
d1ppjf_	99	14 kDa protein of cytochrome bc1 complex (Ubiquino	100.0

>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-46  Score=273.47  Aligned_cols=94  Identities=24%  Similarity=0.288  Sum_probs=87.7

Q ss_pred             HhhHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhcccC
Q 033436            9 LDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQT   88 (119)
Q Consensus         9 ~~p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~e   88 (119)
                      +..+..|+++||+|++  ||||+||++||||+| ++|+|+|||+|||+++.++|+|||+||+|||++|++||||||||+|
T Consensus        19 l~k~~~p~a~w~~n~s--gyrk~GL~~DDli~e-~~~~v~eAlrRLP~~~~~~R~~Ri~RA~~LS~~h~~LPkeqwtk~e   95 (125)
T d3cx5g1          19 LSKLCVPVANQFINLA--GYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQ   95 (125)
T ss_dssp             HHHHHHHHHHHHHHHH--CGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGG
T ss_pred             HHHHHHHHHHHHHHHh--ChhhccCcHhhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcccCCHHHccCCc
Confidence            3344456779999998  599999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             CCCcChHHHHHHHHhhh
Q 033436           89 PFRNYLQDMLALVSILE  105 (119)
Q Consensus        89 ed~~YL~P~i~ev~~e~  105 (119)
                      ||++||+|||+||++|.
T Consensus        96 eD~~YL~Pyi~ev~~E~  112 (125)
T d3cx5g1          96 EDVPYLLPYILEAEAAA  112 (125)
T ss_dssp             GCCCSSHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHH
Confidence            99999999999999885

>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-46  Score=264.14  Aligned_cols=89  Identities=30%  Similarity=0.413  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhcccCCCCc
Q 033436           13 KNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRN   92 (119)
Q Consensus        13 ~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~eed~~   92 (119)
                      ..|+++||+|++  ||||+||++||||.|  ||+|+|||+|||++++++|+|||+||+|||++|++||||||||+|||++
T Consensus         2 ~~p~~~w~~n~s--gyrk~GL~~DDli~e--~~~v~eAlrRLP~~~~~~R~~Ri~RA~~Ls~~h~~LPkeqwtk~eed~~   77 (99)
T d1ppjf_           2 LEGIRKWYYNAA--GFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKS   77 (99)
T ss_dssp             HHHHHHHHHHHH--CGGGGTCCGGGGCCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCC
T ss_pred             ccHHHHHHHHHh--hhhhhcccHhhcccC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCHHHccCCccchH
Confidence            568889999988  599999999999954  9999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhhh
Q 033436           93 YLQDMLALVSILE  105 (119)
Q Consensus        93 YL~P~i~ev~~e~  105 (119)
                      ||+|||+||++|.
T Consensus        78 YL~Pyi~ev~~E~   90 (99)
T d1ppjf_          78 YLEPYLKEVIRER   90 (99)
T ss_dssp             SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985