Citrus Sinensis ID: 033465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHcccccccccccccccEEEEEccEEEccccccccccccccccccccEEEEEEEcccccHHHHHHHcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccHHHHEEEHcccEEcccccHHccccccccccccEEEEEEEEEcccccccHcccccccccccEEEEEc
Coil and Loop (DISEMBL)
MASVQDQLEIKFrltdgsdigpksfpaatsVATLKESVLsqwpkekengprtvkdVKLISAGkilennrtlgecrsplcdipggvttmhvvvqppstekaekkaasqpkqnkcvcvil
Flexible Loop (DISEMBL)
MASVQDQLEIKfrltdgsdigpksfPAATSVATLKESVlsqwpkekengprtvkdvklisagkilennrtlgecrsPLCDIPGGVTTMHVVVQPPSTEkaekkaasqpkqnkcvcvil
Low Complexity Region (SEG)
MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL
Disordered region (IsUnstruct)
*******************************************************VKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVV**************************
Disordered Region (DISOPRED)
*****DQ**IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH**********************KCVCVIL
Disordered Region (DISEMBL)
MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP*****************KCVCVIL
Disordered Region (DISPRO)
****QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPST*************NKCVCVIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9MAB9	117	Membrane-anchored ubiquit	yes	no	0.991	1.0	0.661	5e-42
Q8LCS8	124	Membrane-anchored ubiquit	no	no	1.0	0.951	0.675	7e-40
Q75GT2	119	Membrane-anchored ubiquit	yes	no	0.983	0.974	0.627	1e-38
Q6Z8K4	119	Membrane-anchored ubiquit	no	no	1.0	0.991	0.563	6e-35
Q8GWJ6	119	Membrane-anchored ubiquit	no	no	1.0	0.991	0.546	8e-35
Q9SH14	120	Membrane-anchored ubiquit	no	no	0.966	0.95	0.521	3e-30
Q9SW27	118	Membrane-anchored ubiquit	no	no	0.966	0.966	0.539	1e-29
Q9LSD8	120	Membrane-anchored ubiquit	no	no	0.966	0.95	0.461	3e-26
Q7XRU4	135	Membrane-anchored ubiquit	no	no	0.915	0.8	0.536	3e-26
Q67UI2	126	Membrane-anchored ubiquit	no	no	0.957	0.896	0.495	4e-24

>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 100/118 (84%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLIS
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEK EKK    PK NKCVC ++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK-EKKPKGDPKMNKCVCSVM 117

May serve as docking site to facilitate the association of other proteins to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 2/120 (1%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA V+DQLEIKFRL DGSDIGPK FP AT+VATLKE+V++QWP++KENGP+TVKDVKLIS
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPST--EKAEKKAASQPKQNKCVCVIL 118
           AG+ILENN+T+G+CRSP+ +  G VTTMHV++Q   T  EK +KK     KQNKCVC+  
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCLCF 120

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 96/118 (81%), Gaps = 2/118 (1%)

Query: 2   ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
             VQ+Q EIKFRL DG+DIGPK +PAA++VATLKES+++QWPK+KE GPRTV D+KLI+A
Sbjct: 3   GGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINA 62

Query: 62  GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKK-AASQPKQNKCVCVIL 118
           GKILENN+TL EC+SP+CD   G+TTMHVVV+ P+++K   K  A +PK  +C C I+
Sbjct: 63  GKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  ++ +E+KFRL DG+DIGP  +  +T+V+ LKE +L++WP++KE  P+TV D+KLI+
Sbjct: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK-AEKKAASQPKQNKCVCVIL 118
           AG+ILENNRTL E R P+ ++PGGV TMHVVV+PP  +K +EK+ A+ PKQN+C C IL
Sbjct: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 92/119 (77%), Gaps = 1/119 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  +D +E+KFRL DG+DIGP  +  + +V++LKE ++SQWPK+KEN P+TV D+KLI+
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTE-KAEKKAASQPKQNKCVCVIL 118
           AGKILENNRTL E R P+C++PG + TMH+V++ P+ + K+EK     P +N+CVC IL
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 88/117 (75%), Gaps = 3/117 (2%)

Query: 5   QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
           +D +E+KFRL DG+DIGP  +    +VA+LKE +++QWPK+KEN P+ + +VKLI+ GKI
Sbjct: 4   EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKI 63

Query: 65  LENNRTLGECRSPLC--DIPGGVTTMHVVVQPPSTEKAEKKAASQ-PKQNKCVCVIL 118
           LENN+TL E RS +   ++PG VTTMHVV++PP  EK ++K  +  P+++ CVC IL
Sbjct: 64  LENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)

Query: 5   QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
           ++ ++IKFRL DGSDIGP  + AA++V  LK+ V+S WPK K   P+ + +VKLIS+GKI
Sbjct: 4   EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQPP-STEKAEKKAASQPKQNKCVCVIL 118
           LENN+T+G+C++P  DI GGV  MHVVVQP  +  K EKK    PK   C C IL
Sbjct: 64  LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 83/117 (70%), Gaps = 3/117 (2%)

Query: 5   QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
           +D +E+KFRL DGSD+GP  +    +V+ LKE ++S+WPK+K+  P++  D+KLI+AGKI
Sbjct: 4   EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKI 63

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQ-PPSTEKAEKKAASQ--PKQNKCVCVIL 118
           LEN +T+ +C++P  D+P  V TMHVVVQ  P+  + EKK   +  P+++ C C I+
Sbjct: 64  LENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 2/110 (1%)

Query: 11  KFRLTDGSDIGP-KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNR 69
           KFRL DGSDIGP +    AT+VA LK+ V++ WPK+K   P+T  DVKLIS GKILEN++
Sbjct: 26  KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85

Query: 70  TLGECRSPLCDIPGGVTTMHVVVQPPSTE-KAEKKAASQPKQNKCVCVIL 118
            + +CR+P  D+P    TMHVVVQP S + K +KK    PK  +C C IL
Sbjct: 86  NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 6   DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKIL 65
           + +E++FRL DGSDIGP     AT+V  LKE VL++WP+ KE  PRTV DV +I+AG++L
Sbjct: 12  EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71

Query: 66  ENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKK--AASQPKQNKCVCVIL 118
           ENNRTL E R+   + P G  TMHVVV+    E+  K+   A  P++  C C IL
Sbjct: 72  ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
296082984	117	unnamed protein product [Vitis vinifera]	0.991	1.0	0.906	2e-55
224141467	117	predicted protein [Populus trichocarpa]	0.991	1.0	0.872	2e-53
224077714	117	predicted protein [Populus trichocarpa]	0.991	1.0	0.855	6e-53
449447408	117	PREDICTED: membrane-anchored ubiquitin-f	0.991	1.0	0.838	8e-51
388511339	117	unknown [Lotus japonicus]	0.991	1.0	0.813	4e-50
356526475	117	PREDICTED: membrane-anchored ubiquitin-f	0.991	1.0	0.822	5e-50
351734482	117	uncharacterized protein LOC100306015 [Gl	0.991	1.0	0.805	3e-49
358248372	117	uncharacterized protein LOC100802048 [Gl	0.991	1.0	0.805	5e-49
359488963	132	PREDICTED: membrane-anchored ubiquitin-f	1.0	0.893	0.798	2e-48
356551104	117	PREDICTED: membrane-anchored ubiquitin-f	0.991	1.0	0.771	5e-48

>gi|296082984|emb|CBI22285.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/118 (90%), Positives = 114/118 (96%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           M+ VQDQLEIKFRLTDGSDIGPKSF AATSVATLKE+VL+QWPKEKENGP+TVKDVKLIS
Sbjct: 1   MSGVQDQLEIKFRLTDGSDIGPKSFSAATSVATLKENVLAQWPKEKENGPKTVKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GECRSPLCDIPGGVTTMHVVVQPPS++K EKK ASQPKQNKCVCVIL
Sbjct: 61  AGKILENNRTIGECRSPLCDIPGGVTTMHVVVQPPSSDK-EKKVASQPKQNKCVCVIL 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141467|ref|XP_002324093.1| predicted protein [Populus trichocarpa] gi|222867095|gb|EEF04226.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 111/118 (94%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA VQDQLEIKFRLTDGSDIGPK+FPAATSVATLKE++L+QWPKEKENGPRT+KDVKLIS
Sbjct: 1   MAVVQDQLEIKFRLTDGSDIGPKTFPAATSVATLKENILAQWPKEKENGPRTLKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GECRSPLCDIPGGVTTMHVVVQP S EK  KK A+Q KQ+KCVCVIL
Sbjct: 61  AGKILENNRTVGECRSPLCDIPGGVTTMHVVVQPSSVEKG-KKGANQAKQSKCVCVIL 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077714|ref|XP_002305375.1| predicted protein [Populus trichocarpa] gi|118489660|gb|ABK96631.1| unknown [Populus trichocarpa x Populus deltoides] gi|222848339|gb|EEE85886.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 111/118 (94%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA VQDQLEIKFRL DGSDIGPK+FPAATSVATLKE++L+ WPKEKENGPRT+KDVKLIS
Sbjct: 1   MAGVQDQLEIKFRLADGSDIGPKTFPAATSVATLKENILAHWPKEKENGPRTLKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GEC+SPLCDIPGGVTTMHVVV P S EK EKKAA+QP+Q+KCVCVIL
Sbjct: 61  AGKILENNRTVGECQSPLCDIPGGVTTMHVVVHPSSVEK-EKKAANQPRQSKCVCVIL 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447408|ref|XP_004141460.1| PREDICTED: membrane-anchored ubiquitin-fold protein 1-like isoform 1 [Cucumis sativus] gi|449447410|ref|XP_004141461.1| PREDICTED: membrane-anchored ubiquitin-fold protein 1-like isoform 2 [Cucumis sativus] gi|449521944|ref|XP_004167989.1| PREDICTED: membrane-anchored ubiquitin-fold protein 1-like isoform 1 [Cucumis sativus] gi|449521946|ref|XP_004167990.1| PREDICTED: membrane-anchored ubiquitin-fold protein 1-like isoform 2 [Cucumis sativus]

 Score =  204 bits (518), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 99/118 (83%), Positives = 106/118 (89%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA V DQLEIKFRL DGSDIGPK+FPAATSVATLKES+L+QWP+EKENGPRTVKDVKLIS
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSVATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRTL +CRSPL DIPG VTTMHVV+QPP+ EK EKKA  Q  QNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEK-EKKAGEQATQNKCVCVIL 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511339|gb|AFK43731.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 109/118 (92%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  ++Q EIKFRLTDGSDIGPKSF AATS+ATLKES+L+QWPK+KENGPRTVKD+KLIS
Sbjct: 1   MAGTEEQFEIKFRLTDGSDIGPKSFAAATSIATLKESILAQWPKDKENGPRTVKDMKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKIL+NNRT+GEC+SPLCD P  VTTMHVVVQPP+TEK EKKAAS+ KQNKC+CVIL
Sbjct: 61  AGKILDNNRTVGECQSPLCDAPDTVTTMHVVVQPPTTEK-EKKAASETKQNKCLCVIL 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526475|ref|XP_003531843.1| PREDICTED: membrane-anchored ubiquitin-fold protein 2-like [Glycine max]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  QDQ EIKFRLTDGSDIGPKSFPAATS+ATLKESVL+QWPK+KENGP+T+KDVKLIS
Sbjct: 1   MAGNQDQFEIKFRLTDGSDIGPKSFPAATSIATLKESVLAQWPKDKENGPKTIKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GEC+SPLCD P  VTTMHVVVQ P+TEK EKKAA++  QNKC+CVIL
Sbjct: 61  AGKILENNRTVGECQSPLCDTPDTVTTMHVVVQHPATEK-EKKAANKATQNKCMCVIL 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734482|ref|NP_001236306.1| uncharacterized protein LOC100306015 [Glycine max] gi|255627285|gb|ACU13987.1| unknown [Glycine max]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  QDQ EIKFRLTDGSDIGPKSFPAATS+ATLKESVL+QWPK+KENGP+T+KD+KLI+
Sbjct: 1   MAGNQDQFEIKFRLTDGSDIGPKSFPAATSIATLKESVLAQWPKDKENGPKTIKDLKLIN 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GEC+SPLCD P  VTTMHVVVQ P+TEK EKKAA++  QNKC+CVIL
Sbjct: 61  AGKILENNRTVGECQSPLCDTPDTVTTMHVVVQHPATEK-EKKAANKATQNKCMCVIL 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248372|ref|NP_001239615.1| uncharacterized protein LOC100802048 [Glycine max] gi|255647353|gb|ACU24143.1| unknown [Glycine max]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  QDQLEIKF L+DG+DIGPKS+ AATS+ATLKESVL+QWPK+KE GPRTVKD+KLIS
Sbjct: 1   MAGNQDQLEIKFLLSDGTDIGPKSYAAATSIATLKESVLAQWPKDKEYGPRTVKDLKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGKILENNRT+GEC+SPLCD+PGGV TMHVVVQPPS EK +KK AS+ KQ+KCVCVIL
Sbjct: 61  AGKILENNRTVGECQSPLCDLPGGVITMHVVVQPPSVEK-DKKVASEAKQSKCVCVIL 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488963|ref|XP_002284262.2| PREDICTED: membrane-anchored ubiquitin-fold protein 2 [Vitis vinifera]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/119 (79%), Positives = 106/119 (89%), Gaps = 1/119 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           M+ VQDQLEIKFRLTDGSDIGPKSF AATSVATLKE+VL+QWPKEKENGP+TVKDVKLIS
Sbjct: 1   MSGVQDQLEIKFRLTDGSDIGPKSFSAATSVATLKENVLAQWPKEKENGPKTVKDVKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK-QNKCVCVIL 118
           AGKILENNRT+GECRSPLCDIPGGVTTMHVVVQPPS++K  KK+    K +  C+C  +
Sbjct: 61  AGKILENNRTIGECRSPLCDIPGGVTTMHVVVQPPSSDKGIKKSGKPTKAEQMCLCYTM 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551104|ref|XP_003543918.1| PREDICTED: membrane-anchored ubiquitin-fold protein 1-like [Glycine max]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
           MA  QDQLEIKFRL+DG+DIGPKS+ AATS+ TLKESVL+QWPK+KE GPRTVKD+KLIS
Sbjct: 1   MAGSQDQLEIKFRLSDGTDIGPKSYSAATSIVTLKESVLAQWPKDKEYGPRTVKDLKLIS 60

Query: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           AGK+LENN+T+G+C+SPLCD+PGGVTTMHVVVQPPS E+ + K AS+ KQ+KCVCVIL
Sbjct: 61  AGKVLENNKTVGDCQSPLCDLPGGVTTMHVVVQPPSVEE-DMKVASEAKQSKCVCVIL 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2180937	124	MUB2 "AT5G15460" [Arabidopsis	0.983	0.935	0.686	4.2e-40
TAIR|locus:2102172	117	MUB1 "AT3G01050" [Arabidopsis	0.991	1.0	0.661	6.8e-40
TAIR|locus:2030616	119	MUB6 "AT1G22050" [Arabidopsis	1.0	0.991	0.546	3.2e-33
TAIR|locus:2029466	120	MUB5 "AT1G77870" [Arabidopsis	0.966	0.95	0.521	1e-29
TAIR|locus:2117383	118	ATGP4 "AT4G24990" [Arabidopsis	0.966	0.966	0.539	2.4e-28
TAIR|locus:2091975	120	MUB4 "AT3G26980" [Arabidopsis	0.966	0.95	0.461	4e-26
ZFIN|ZDB-GENE-030131-3431	117	ubl3a "ubiquitin-like 3a" [Dan	0.906	0.914	0.284	6.3e-05
UNIPROTKB|F1P389	109	UBL3 "Uncharacterized protein"	0.754	0.816	0.288	0.00035
UNIPROTKB|Q2TA46	117	UBL3 "Ubiquitin-like protein 3	0.906	0.914	0.258	0.00057
UNIPROTKB|O95164	117	UBL3 "Ubiquitin-like protein 3	0.906	0.914	0.258	0.00057

TAIR|locus:2180937 MUB2 "AT5G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 81/118 (68%), Positives = 100/118 (84%)

Query:     1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
             MA V+DQLEIKFRL DGSDIGPK FP AT+VATLKE+V++QWP++KENGP+TVKDVKLIS
Sbjct:     1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query:    61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQP--KQNKCVCV 116
             AG+ILENN+T+G+CRSP+ +  G VTTMHV++Q   TEK +KK   +   KQNKCVC+
Sbjct:    61 AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGDLKQNKCVCL 118

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2102172 MUB1 "AT3G01050" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 78/118 (66%), Positives = 100/118 (84%)

Query:     1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
             MA V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLIS
Sbjct:     1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query:    61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
             AGK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEK EKK    PK NKCVC ++
Sbjct:    61 AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK-EKKPKGDPKMNKCVCSVM 117

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2030616 MUB6 "AT1G22050" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 65/119 (54%), Positives = 92/119 (77%)

Query:     1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60
             MA  +D +E+KFRL DG+DIGP  +  + +V++LKE ++SQWPK+KEN P+TV D+KLI+
Sbjct:     1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query:    61 AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK-AEKKAASQPKQNKCVCVIL 118
             AGKILENNRTL E R P+C++PG + TMH+V++ P+ +K +EK     P +N+CVC IL
Sbjct:    61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCTIL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2029466 MUB5 "AT1G77870" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 61/117 (52%), Positives = 88/117 (75%)

Query:     5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
             +D +E+KFRL DG+DIGP  +    +VA+LKE +++QWPK+KEN P+ + +VKLI+ GKI
Sbjct:     4 EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKI 63

Query:    65 LENNRTLGECRSPLC--DIPGGVTTMHVVVQPPSTEKAEKKAASQP-KQNKCVCVIL 118
             LENN+TL E RS +   ++PG VTTMHVV++PP  EK ++K  + P +++ CVC IL
Sbjct:    64 LENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2117383 ATGP4 "AT4G24990" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 62/115 (53%), Positives = 81/115 (70%)

Query:     5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
             ++ ++IKFRL DGSDIGP  + AA++V  LK+ V+S WPK K   P+ + +VKLIS+GKI
Sbjct:     4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKI 63

Query:    65 LENNRTLGECRSPLCDIPGGVTTMHVVVQPP-STEKAEKKAASQPKQNKCVCVIL 118
             LENN+T+G+C++P  DI GGV  MHVVVQP  +  K EKK    PK   C C IL
Sbjct:    64 LENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVICTCTIL 118

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2091975 MUB4 "AT3G26980" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 54/117 (46%), Positives = 83/117 (70%)

Query:     5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
             +D +E+KFRL DGSD+GP  +    +V+ LKE ++S+WPK+K+  P++  D+KLI+AGKI
Sbjct:     4 EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKI 63

Query:    65 LENNRTLGECRSPLCDIPGGVTTMHVVVQ-PPSTEKAEKKAASQ--PKQNKCVCVIL 118
             LEN +T+ +C++P  D+P  V TMHVVVQ  P+  + EKK   +  P+++ C C I+
Sbjct:    64 LENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKKIEKEEAPQRSFCSCTIM 120

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

ZFIN|ZDB-GENE-030131-3431 ubl3a "ubiquitin-like 3a" [Danio rerio (taxid:7955)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 33/116 (28%), Positives = 51/116 (43%)

Query:     6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGKI 64
             D + ++  L  G       F    S A + + V   WP + +E    +   V+LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSAADIAKHVYDNWPMDWEEEQVSSPNIVRLIYQGRF 66

Query:    65 LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK--QNKCVCVIL 118
             L  N TLG  + PL    G  T MH+V +    E   +   ++ K  ++ C CVIL
Sbjct:    67 LHGNVTLGVLKLPL----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1P389 UBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 28/97 (28%), Positives = 44/97 (45%)

Query:    25 FPAATSVATLKESVLSQWPKEKENGPRTVKDV-KLISAGKILENNRTLGECRSPLCDIPG 83
             F    S A + + V   WP + E    +  ++ +LI  G+ L  N TLG  + P     G
Sbjct:    18 FSPNDSAADIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPF----G 73

Query:    84 GVTTMHVVVQPPSTEKAEKKAASQPK--QNKCVCVIL 118
               T MH+V +    E   +   ++ K  ++ C CVIL
Sbjct:    74 KTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 109

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q2TA46 UBL3 "Ubiquitin-like protein 3" [Bos taurus (taxid:9913)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 30/116 (25%), Positives = 50/116 (43%)

Query:     6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDV-KLISAGKI 64
             D + ++  L  G       F    S + + + V   WP + E    +  ++ +LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    65 LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK--QNKCVCVIL 118
             L  N TLG  + P     G  T MH+V +    E   +   ++ K  ++ C CVIL
Sbjct:    67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|O95164 UBL3 "Ubiquitin-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 30/116 (25%), Positives = 50/116 (43%)

Query:     6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDV-KLISAGKI 64
             D + ++  L  G       F    S + + + V   WP + E    +  ++ +LI  G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    65 LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK--QNKCVCVIL 118
             L  N TLG  + P     G  T MH+V +    E   +   ++ K  ++ C CVIL
Sbjct:    67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 117

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAB9	MUB1_ARATH	No assigned EC number	0.6610	0.9915	1.0	yes	no
Q75GT2	MUB1_ORYSJ	No assigned EC number	0.6271	0.9830	0.9747	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XVII000155 hypothetical protein (117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-62
cd01814	113	cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4	3e-60
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.002
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	0.002

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score =  184 bits (469), Expect = 5e-62
 Identities = 68/111 (61%), Positives = 83/111 (74%)

Query: 6   DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKIL 65
           + +E+KFRL DGSDIGP  F  AT+VA LKE VL+QWPK+KE GP++  DVKLI+AGKIL
Sbjct: 1   ELIELKFRLVDGSDIGPFRFSPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKIL 60

Query: 66  ENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCV 116
           ENN+TLGECR P  + PGGV  MHVVV+PP  E   +K  ++PKQ  C C 
Sbjct: 61  ENNKTLGECRLPAGETPGGVIVMHVVVRPPLPEPNSEKKRNKPKQTGCGCC 111

Length = 111

>gnl|CDD|176409 cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4

 Score =  180 bits (457), Expect = 3e-60
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 4   VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK 63
           V++Q+EIKFRL DGSDIGPK +PAAT+V  LKE V+SQWPK+KE GP+TV +VKLISAGK
Sbjct: 1   VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGK 60

Query: 64  ILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK-AEKKAASQPKQNKCVC 115
           ILEN++T+GECRSP+ DI GGV TMHVVVQPP  +K  EKK    PK   C C
Sbjct: 61  ILENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown. Length = 113

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 13/65 (20%)

Query: 29 TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
           +VA LK  + ++            +  +LI AGKIL++++TL +            +T+
Sbjct: 18 DTVAELKAKIAAKEG-------VPPEQQRLIYAGKILKDDKTLSDYG------IQDGSTL 64

Query: 89 HVVVQ 93
          H+V++
Sbjct: 65 HLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)

Query: 29 TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
           +V+ LKE +      +KE  P  V   +LI +GK+LE++ TL E       I  G +T+
Sbjct: 16 DTVSELKEKIE-----DKEGIP--VDQQRLIFSGKVLEDDTTLSE-----YGIQDG-STL 62

Query: 89 HVVVQPP 95
          H+V++  
Sbjct: 63 HLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	99.97
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.97
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.79
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.78
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.78
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.77
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.75
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.75
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.75
PTZ00044	76	ubiquitin; Provisional	99.74
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.73
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.72
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.72
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.7
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.7
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.69
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.68
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.67
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.66
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.66
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.65
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.64
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.64
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.63
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.59
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.59
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.56
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.54
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.54
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.5
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.47
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.43
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.41
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.37
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.22
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.13
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	99.09
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.97
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	98.97
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.9
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.82
PLN02560	308	enoyl-CoA reductase	98.69
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.65
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.53
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.49
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.22
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.92
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.91
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.9
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.84
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	97.74
KOG4495	110	consensus RNA polymerase II transcription elongati	97.52
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.42
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.42
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	97.35
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	97.08
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.99
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.96
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	96.95
KOG4583	391	consensus Membrane-associated ER protein involved	96.88
COG5417	81	Uncharacterized small protein [Function unknown]	96.29
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.18
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	96.04
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	95.43
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	95.13
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.07
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	95.01
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.98
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	92.92
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	91.94
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	90.55
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	90.52
PRK06437	67	hypothetical protein; Provisional	89.93
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	89.24
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	89.06
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	88.72
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	86.84
KOG1639	297	consensus Steroid reductase required for elongatio	85.76
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	85.29
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	83.99
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	82.46
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	82.29
PRK08364	70	sulfur carrier protein ThiS; Provisional	82.11
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	80.49

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=99.97  E-value=8.5e-32  Score=187.51  Aligned_cols=111  Identities=49%  Similarity=0.924  Sum_probs=84.8

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.|+|+|++.+|.++.++.|++++||++||+.|+++||.+|+..|.+++++||||+||+|+|++||++++++.+++|+.+
T Consensus         1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred             CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence            47999999999995556999999999999999999999999988889999999999999999999999999998876778


Q ss_pred             EEEEEEeCCCCchhhhhhhccCCCCCCeEEe
Q 033465           86 TTMHVVVQPPSTEKAEKKAASQPKQNKCVCV  116 (118)
Q Consensus        86 ~tmhlv~~~~~~~~~~~~~~~~~~~~~c~C~  116 (118)
                      ++|||+++++.+.+++.+...+.++..|+|+
T Consensus        81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~  111 (111)
T PF13881_consen   81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC  111 (111)
T ss_dssp             EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred             EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence            9999999999998886545666888999996

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.97  E-value=1.7e-31  Score=185.69  Aligned_cols=112  Identities=68%  Similarity=1.107  Sum_probs=104.8

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      +++.+.|+||+.+|.++.|+.+++++||++||++|+++||.+++++|.++++|||||+||+|+|+.||++|+++.|+.++
T Consensus         1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~   80 (113)
T cd01814           1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG   80 (113)
T ss_pred             CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence            46889999999999999999999999999999999999999999998778999999999999999999999999888888


Q ss_pred             CeEEEEEEeCCCCchhhh-hhhccCCCCCCeEE
Q 033465           84 GVTTMHVVVQPPSTEKAE-KKAASQPKQNKCVC  115 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~~~~-~~~~~~~~~~~c~C  115 (118)
                      .++||||++|++.+.+++ +.+....++.+|+|
T Consensus        81 ~~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c  113 (113)
T cd01814          81 GVITMHVVVQPPLADKKTEKKVDKAPKAVICTC  113 (113)
T ss_pred             CceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence            899999999999999885 77787888899988

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.79  E-value=4.6e-19  Score=114.08  Aligned_cols=74  Identities=26%  Similarity=0.413  Sum_probs=66.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|+++. +++++++||++||++|++     ..++|  +++|||+|+||.|+|+.+|++|+|+++      .+
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~-----~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~   66 (74)
T cd01807           1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSE-----HLNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AK   66 (74)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CE
Confidence            47899999999998 999999999999999964     46777  599999999999999999999999987      48


Q ss_pred             EEEEeCCC
Q 033465           88 MHVVVQPP   95 (118)
Q Consensus        88 mhlv~~~~   95 (118)
                      +|++++++
T Consensus        67 l~l~~~~~   74 (74)
T cd01807          67 LNLVVRPP   74 (74)
T ss_pred             EEEEEcCC
Confidence            89998863

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.78  E-value=5.3e-19  Score=113.90  Aligned_cols=74  Identities=24%  Similarity=0.275  Sum_probs=64.2

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+  ++++. +++++++||++||++|+     +.+++|  +++|||||+||.|+|+.+|++|+|+++      .|
T Consensus         1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~t   64 (74)
T cd01793           1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVA-----GLEGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CT   64 (74)
T ss_pred             CEEEEEC--CCEEE-EEECCcCcHHHHHHHHH-----hhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CE
Confidence            4677877  46777 99999999999999995     446777  599999999999999999999999976      58


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++++++
T Consensus        65 l~l~~~l~GG   74 (74)
T cd01793          65 LEVAGRLLGG   74 (74)
T ss_pred             EEEEEecCCC
Confidence            9999998875

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.78  E-value=7.6e-19  Score=115.85  Aligned_cols=75  Identities=20%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             eeEEEEEeCCCceeee-eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccC--CCCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGP-KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECR--SPLCDIPG   83 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~-~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~--i~~~~~p~   83 (118)
                      .|.|.||+.+|+.+.. +++++++||++||++|++.+|.    .| ++++|||||+||+|+|++||++|.  +.++    
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~----   71 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY----   71 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CC-ChhHeEEEEcCeeccchhhHHHHhhcccCC----
Confidence            3789999999999440 5558999999999999877542    23 259999999999999999999996  8765    


Q ss_pred             CeEEEEEEe
Q 033465           84 GVTTMHVVV   92 (118)
Q Consensus        84 ~~~tmhlv~   92 (118)
                        .|||||.
T Consensus        72 --~tiHLV~   78 (79)
T cd01790          72 --HMVHLVC   78 (79)
T ss_pred             --ceEEEEe
Confidence              5999985

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.77  E-value=1.2e-18  Score=119.66  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.++|+||+.+|+++. +++++++||++||++|++     .+++|  +++|||+|+||.|+|+.+|++|+|.++     
T Consensus        25 ~~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~-----   91 (103)
T cd01802          25 YDTMELFIETLTGTCFE-LRVSPFETVISVKAKIQR-----LEGIP--VAQQHLIWNNMELEDEYCLNDYNISEG-----   91 (103)
T ss_pred             CCCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--hHHEEEEECCEECCCCCcHHHcCCCCC-----
Confidence            35699999999999999 999999999999999964     45677  599999999999999999999999987     


Q ss_pred             eEEEEEEeCCCCc
Q 033465           85 VTTMHVVVQPPST   97 (118)
Q Consensus        85 ~~tmhlv~~~~~~   97 (118)
                       .++|++++.+++
T Consensus        92 -stL~l~~~l~GG  103 (103)
T cd01802          92 -CTLKLVLAMRGG  103 (103)
T ss_pred             -CEEEEEEecCCC
Confidence             488999988764

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.75  E-value=3.1e-18  Score=112.15  Aligned_cols=75  Identities=23%  Similarity=0.272  Sum_probs=65.5

Q ss_pred             eEEEEEeCCCce-eeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            8 LEIKFRLTDGSD-IGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         8 i~i~~~~~~g~~-~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ++|+||+.+|++ +. ++ +++++||.+||++|.+     .+++|  +++|||||+||+|+|+.+|++|||+++      
T Consensus         1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~-----~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~------   66 (78)
T cd01797           1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQE-----LFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLN------   66 (78)
T ss_pred             CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHH-----HhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence            579999999997 56 85 8999999999999964     45677  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCC
Q 033465           86 TTMHVVVQPPS   96 (118)
Q Consensus        86 ~tmhlv~~~~~   96 (118)
                      .++|+++++.+
T Consensus        67 ~~i~l~~~~~~   77 (78)
T cd01797          67 DIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEEecCC
Confidence            48899998764

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.75  E-value=2.7e-18  Score=110.57  Aligned_cols=74  Identities=23%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465           10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH   89 (118)
Q Consensus        10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh   89 (118)
                      |+||+..|+++. +++++++||++||++|.+     ..++|  +++|||+|+||.|+|+++|++|+|+++      .++|
T Consensus         1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~------~tl~   66 (74)
T cd01810           1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQ-----RERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPG------CTVF   66 (74)
T ss_pred             CEEECCCCCEEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCEECCCCCCHHHcCCCCC------CEEE
Confidence            578999999998 999999999999999953     45677  599999999999999999999999987      4888


Q ss_pred             EEeCCCCc
Q 033465           90 VVVQPPST   97 (118)
Q Consensus        90 lv~~~~~~   97 (118)
                      ++++..++
T Consensus        67 l~~~l~gg   74 (74)
T cd01810          67 MNLRLRGG   74 (74)
T ss_pred             EEEEccCC
Confidence            88887764

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.75  E-value=2.3e-18  Score=110.62  Aligned_cols=69  Identities=25%  Similarity=0.336  Sum_probs=61.7

Q ss_pred             EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465           10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH   89 (118)
Q Consensus        10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh   89 (118)
                      ++||+.+|+++. +++++++||++||++|++     .+++|  +++|||||+||.|+|+.+|++|+|+.+      .++|
T Consensus         1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~-----~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~------~tv~   66 (70)
T cd01794           1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQA-----AEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKD------YVVQ   66 (70)
T ss_pred             CeEEcCCCCEEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHeEEEECCeECCCCCCHHHcCCCCC------CEEE
Confidence            578999999999 999999999999999964     46677  599999999999999999999999965      4888


Q ss_pred             EEe
Q 033465           90 VVV   92 (118)
Q Consensus        90 lv~   92 (118)
                      |++
T Consensus        67 ~~~   69 (70)
T cd01794          67 VIV   69 (70)
T ss_pred             EEe
Confidence            876

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.74  E-value=4.9e-18  Score=109.15  Aligned_cols=76  Identities=22%  Similarity=0.358  Sum_probs=67.6

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|.||+.+|+++. +++++++||++||++|.+.     .++|  +++|||+|+|+.|+|+.+|++|+++++      .+
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~------~~   66 (76)
T PTZ00044          1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEK-----EGID--VKQIRLIYSGKQMSDDLKLSDYKVVPG------ST   66 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEEccCCCcHHHcCCCCC------CE
Confidence            47899999999998 9999999999999999644     5677  499999999999999999999999977      48


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|+++++.++
T Consensus        67 i~l~~~~~gg   76 (76)
T PTZ00044         67 IHMVLQLRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            8998887764

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.73  E-value=7.8e-18  Score=107.15  Aligned_cols=70  Identities=27%  Similarity=0.399  Sum_probs=62.5

Q ss_pred             EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465           10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH   89 (118)
Q Consensus        10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh   89 (118)
                      |.||+.+|.++. +++++++||++||++|++.     .++|  +++|||+|+|+.|+|+.+|++|+|+++      +++|
T Consensus         1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~------stl~   66 (70)
T cd01798           1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKR-----QGVP--PDQLRVIFAGKELRNTTTIQECDLGQQ------SILH   66 (70)
T ss_pred             CEEEcCCCCEEE-EEECCCChHHHHHHHHHHH-----HCCC--HHHeEEEECCeECCCCCcHHHcCCCCC------CEEE
Confidence            578999999998 9999999999999999644     5666  589999999999999999999999977      4889


Q ss_pred             EEeC
Q 033465           90 VVVQ   93 (118)
Q Consensus        90 lv~~   93 (118)
                      ++.|
T Consensus        67 l~~~   70 (70)
T cd01798          67 AVRR   70 (70)
T ss_pred             EEeC
Confidence            9875

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.72  E-value=1.3e-17  Score=108.05  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      +.|+|++..|+.+. +++++++||++||++|++.     .++|  +++|||||+|++|+|+.+|++|||.+|      .+
T Consensus         2 ~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~------st   67 (73)
T cd01791           2 IEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQ-----TGTR--PEKIVLKKWYTIFKDHISLGDYEIHDG------MN   67 (73)
T ss_pred             EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCC------CE
Confidence            68999999999998 9999999999999999755     2465  599999999999999999999999987      36


Q ss_pred             EEEE
Q 033465           88 MHVV   91 (118)
Q Consensus        88 mhlv   91 (118)
                      +||.
T Consensus        68 v~l~   71 (73)
T cd01791          68 LELY   71 (73)
T ss_pred             EEEE
Confidence            7764

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.72  E-value=3.7e-17  Score=104.33  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=67.2

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. ++++++.||++||++|.+.     .++|  ++.|||+|+|+.|+|+.+|++|++.+|      .+
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g------~~   66 (76)
T cd01806           1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDDKTAADYKLEGG------SV   66 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHh-----hCCC--hhhEEEEECCeEccCCCCHHHcCCCCC------CE
Confidence            47899999999998 9999999999999999644     4566  589999999999999999999999987      38


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++.+++
T Consensus        67 i~l~~~~~gg   76 (76)
T cd01806          67 LHLVLALRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            8999887664

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.70  E-value=5.4e-17  Score=105.94  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++..|+.++ +++++++||++||++|+++     .++|  +++|||+|+|+.|+|+ +|++|||+++      .+
T Consensus         2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~------~~   66 (78)
T cd01804           2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQR-----LKVP--KERLALLHRETRLSSG-KLQDLGLGDG------SK   66 (78)
T ss_pred             eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHH-----hCCC--hHHEEEEECCcCCCCC-cHHHcCCCCC------CE
Confidence            68999999999998 9999999999999999754     3455  5999999999999999 9999999987      37


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++....++
T Consensus        67 i~l~~~~~~~   76 (78)
T cd01804          67 LTLVPTVEAG   76 (78)
T ss_pred             EEEEeecccc
Confidence            8888877654

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.70  E-value=5.2e-17  Score=103.63  Aligned_cols=76  Identities=25%  Similarity=0.378  Sum_probs=67.4

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|.|++.+|+.+. +++++++||++||++|.+.     .++|  ++.|||+|.|+.|+|+.+|++|++.++      .+
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~   66 (76)
T cd01803           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (76)
T ss_pred             CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCcHHHcCCCCC------CE
Confidence            47899999999998 9999999999999999643     4666  589999999999999999999999977      48


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++..++
T Consensus        67 i~l~~~~~gg   76 (76)
T cd01803          67 LHLVLRLRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            8999988764

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.69  E-value=7.4e-17  Score=103.00  Aligned_cols=71  Identities=24%  Similarity=0.312  Sum_probs=61.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      +.|.|++.+|. .. ++++++.||++||++|++.     .++|  +++|||+|+||.|+|+.+|++||++++      .+
T Consensus         1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~-----~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st   65 (71)
T cd01808           1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKK-----FKAN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT   65 (71)
T ss_pred             CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence            46889999997 46 9999999999999999765     3455  599999999999999999999999977      47


Q ss_pred             EEEEeC
Q 033465           88 MHVVVQ   93 (118)
Q Consensus        88 mhlv~~   93 (118)
                      +|++++
T Consensus        66 l~l~~~   71 (71)
T cd01808          66 VHLVIK   71 (71)
T ss_pred             EEEEEC
Confidence            888765

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.68  E-value=1.9e-16  Score=101.82  Aligned_cols=74  Identities=27%  Similarity=0.343  Sum_probs=62.3

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||++||++|.+.     .+++.++++|||+|+|+.|+|+.+|++||+++|+      +
T Consensus         1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~-----~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~   68 (77)
T cd01805           1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEE-----KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKD------F   68 (77)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCC------E
Confidence            57899999999998 9999999999999999754     3451125999999999999999999999999874      5


Q ss_pred             EEEEeC
Q 033465           88 MHVVVQ   93 (118)
Q Consensus        88 mhlv~~   93 (118)
                      ++++++
T Consensus        69 i~~~~~   74 (77)
T cd01805          69 VVVMVS   74 (77)
T ss_pred             EEEEEe
Confidence            555554

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.67  E-value=2.2e-16  Score=99.82  Aligned_cols=72  Identities=28%  Similarity=0.419  Sum_probs=64.0

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |+|+|++.+|.++. +++++++||++||++|++.     .++|  ++.|||+|.|+.|+|+.+|++||+.++      .+
T Consensus         1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~   66 (72)
T cd01809           1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEE-----VGIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT   66 (72)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence            57899999999998 9999999999999999755     3566  589999999999999999999999987      47


Q ss_pred             EEEEeC
Q 033465           88 MHVVVQ   93 (118)
Q Consensus        88 mhlv~~   93 (118)
                      +|++++
T Consensus        67 l~l~~~   72 (72)
T cd01809          67 IHLVKR   72 (72)
T ss_pred             EEEEeC
Confidence            888764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.66  E-value=2.2e-16  Score=103.25  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=65.6

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--EeCCeecCCCCcccccCCCCCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .++|+|++..|+++. ++++++.||++||++|++.     .++|  +++|||  +|.|++|+|+.+|++||+.+|     
T Consensus         2 ~~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~-----~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~g-----   68 (80)
T cd01792           2 GWDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQK-----IGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPG-----   68 (80)
T ss_pred             ceEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCC-----
Confidence            478999999999998 9999999999999999754     3565  599999  999999999999999999987     


Q ss_pred             eEEEEEEeCCC
Q 033465           85 VTTMHVVVQPP   95 (118)
Q Consensus        85 ~~tmhlv~~~~   95 (118)
                       .++|++++..
T Consensus        69 -s~l~l~~~~~   78 (80)
T cd01792          69 -STVLLVVQNC   78 (80)
T ss_pred             -CEEEEEEEcc
Confidence             3778887643

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.66  E-value=2.6e-16  Score=99.15  Aligned_cols=68  Identities=25%  Similarity=0.406  Sum_probs=60.4

Q ss_pred             EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEe
Q 033465           13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVV   92 (118)
Q Consensus        13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~   92 (118)
                      |+.+|+++. +++++++||.+||++|++.+     ++|  ++.|||+|+|+.|+|+.+|++|||.++      .++|+++
T Consensus         1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~-----~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l~~   66 (69)
T PF00240_consen    1 KTLSGKTFT-LEVDPDDTVADLKQKIAEET-----GIP--PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHLVI   66 (69)
T ss_dssp             EETTSEEEE-EEEETTSBHHHHHHHHHHHH-----TST--GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEEEE
T ss_pred             CCCCCcEEE-EEECCCCCHHHhhhhccccc-----ccc--cccceeeeeeecccCcCcHHHcCCCCC------CEEEEEE
Confidence            578999998 99999999999999997653     455  599999999999999999999999987      4888888


Q ss_pred             CC
Q 033465           93 QP   94 (118)
Q Consensus        93 ~~   94 (118)
                      ++
T Consensus        67 k~   68 (69)
T PF00240_consen   67 KP   68 (69)
T ss_dssp             SS
T ss_pred             ec
Confidence            75

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.3e-16  Score=100.20  Aligned_cols=70  Identities=29%  Similarity=0.414  Sum_probs=63.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      +.|++++++|+.++ ++++|+++|..+|++|     ++.+++|  |.+|||||+||++.|+.|-++|++.-|      ++
T Consensus         1 m~iKvktLt~KeIe-idIep~DkverIKErv-----EEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SV   66 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERV-----EEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SV   66 (70)
T ss_pred             CeeeEeeeccceEE-EeeCcchHHHHHHHHh-----hhhcCCC--chhhhhhhccccccccccHHHhhhccc------ee
Confidence            36899999999999 9999999999999999     5678998  589999999999999999999999866      57


Q ss_pred             EEEE
Q 033465           88 MHVV   91 (118)
Q Consensus        88 mhlv   91 (118)
                      +|++
T Consensus        67 lHlv   70 (70)
T KOG0005|consen   67 LHLV   70 (70)
T ss_pred             EeeC
Confidence            8874

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.64  E-value=5.1e-16  Score=99.58  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             EEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCC
Q 033465           10 IKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD   80 (118)
Q Consensus        10 i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~   80 (118)
                      |+|++. +|+++. +++++++||++||++|++     .+++|  +++|||||+||.|+|+ .+|++|||++++
T Consensus         1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~-----~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~   65 (71)
T cd01796           1 ITVYTARSETTFS-LDVDPDLELENFKALCEA-----ESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGD   65 (71)
T ss_pred             CEEEECCCCCEEE-EEECCcCCHHHHHHHHHH-----HhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCC
Confidence            578888 899998 999999999999999953     46777  4999999999999887 689999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.64  E-value=4.1e-16  Score=101.03  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465           15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                      ++|+++. +++++++||++||++|..     ..++|  +++|||+|.|+.|+|+.+|++|++.+++      ++|+++++
T Consensus         5 l~g~~~~-l~v~~~~TV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~   70 (76)
T cd01800           5 LNGQMLN-FTLQLSDPVSVLKVKIHE-----ETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE   70 (76)
T ss_pred             cCCeEEE-EEECCCCcHHHHHHHHHH-----HHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence            4788898 999999999999999964     35677  5999999999999999999999999874      88999998


Q ss_pred             CCchh
Q 033465           95 PSTEK   99 (118)
Q Consensus        95 ~~~~~   99 (118)
                      +++.+
T Consensus        71 ~gg~~   75 (76)
T cd01800          71 RGGRK   75 (76)
T ss_pred             CCCcC
Confidence            88654

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=3.3e-17  Score=113.54  Aligned_cols=77  Identities=26%  Similarity=0.369  Sum_probs=70.3

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEE
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM   88 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tm   88 (118)
                      .+.+++..|+++. ++++|++||..||.+|     ++.+++|  +++|||||+||+|+|..||++|||...      .|+
T Consensus         2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i-----~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl   67 (128)
T KOG0003|consen    2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STL   67 (128)
T ss_pred             cEEEEEeeCceEE-EEecccchHHHHHHHh-----ccccCCC--HHHHHHHhcccccccCCcccccCccch------hhh
Confidence            5678889999999 9999999999999999     6788987  699999999999999999999999864      599


Q ss_pred             EEEeCCCCchh
Q 033465           89 HVVVQPPSTEK   99 (118)
Q Consensus        89 hlv~~~~~~~~   99 (118)
                      |+++++.++.-
T Consensus        68 ~~~~rL~GG~i   78 (128)
T KOG0003|consen   68 HLVLRLRGGII   78 (128)
T ss_pred             hhhHHHhcCCC
Confidence            99999999844

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5.9e-16  Score=112.82  Aligned_cols=79  Identities=28%  Similarity=0.406  Sum_probs=72.0

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      +.|.++++.|+++. +++++++||..+|.+|     ++.++||  +++|||||+|+.|+|..+|+||+|+-.      .|
T Consensus         1 m~ifVk~l~~kti~-~eve~~~ti~~~Kaki-----q~~egIp--~dqqrlifag~qLedgrtlSDY~Iqke------st   66 (156)
T KOG0004|consen    1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (156)
T ss_pred             Cccchhhcccccee-eeecccccHHHHHHhh-----hcccCCC--chhhhhhhhhcccccCCcccccccccc------ce
Confidence            35788899999998 9999999999999999     6789998  599999999999999999999999964      69


Q ss_pred             EEEEeCCCCchhh
Q 033465           88 MHVVVQPPSTEKA  100 (118)
Q Consensus        88 mhlv~~~~~~~~~  100 (118)
                      +||++++.++..+
T Consensus        67 l~l~l~l~Gg~kk   79 (156)
T KOG0004|consen   67 LHLVLRLRGGAKK   79 (156)
T ss_pred             EEEEEEecCCccc
Confidence            9999999999764

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.59  E-value=9.9e-15  Score=96.98  Aligned_cols=80  Identities=15%  Similarity=0.297  Sum_probs=71.5

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      .+..|.|++++.+|+.+. +++.+++++..||+++.+     ..++|  +++|||+|.|+.|+|++|+++|++.+++   
T Consensus         8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~-----~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d---   76 (87)
T cd01763           8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQ-----RQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGD---   76 (87)
T ss_pred             CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHH-----HhCCC--ccceEEEECCeECCCCCCHHHcCCCCCC---
Confidence            456799999999999999 999999999999999964     45676  5899999999999999999999999885   


Q ss_pred             CeEEEEEEeCCCCc
Q 033465           84 GVTTMHVVVQPPST   97 (118)
Q Consensus        84 ~~~tmhlv~~~~~~   97 (118)
                         ++|++++..++
T Consensus        77 ---~I~v~l~l~GG   87 (87)
T cd01763          77 ---EIEVMLEQTGG   87 (87)
T ss_pred             ---EEEEEEecccC
Confidence               88999988764

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.56  E-value=9.7e-15  Score=92.22  Aligned_cols=69  Identities=17%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |.|+|++. |..++ +++++++||++||++|++     ..++|  +++|||+|.|+.|+|+.+|++|++.+|+      +
T Consensus         1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~-----~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~   65 (71)
T cd01812           1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAP-----VTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGS------K   65 (71)
T ss_pred             CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHH-----hhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence            57888886 88888 999999999999999954     45676  5999999999999999999999999874      5


Q ss_pred             EEEE
Q 033465           88 MHVV   91 (118)
Q Consensus        88 mhlv   91 (118)
                      +|++
T Consensus        66 l~v~   69 (71)
T cd01812          66 VMLL   69 (71)
T ss_pred             EEEe
Confidence            6654

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.54  E-value=7.3e-15  Score=96.02  Aligned_cols=58  Identities=28%  Similarity=0.448  Sum_probs=47.8

Q ss_pred             CCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033465           26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQ   93 (118)
Q Consensus        26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~   93 (118)
                      +.++||.+||++|+++++   ++++ ++++|||||+||+|+|+.||++|||+++      .++|++.+
T Consensus        18 ~~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~   75 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK   75 (75)
T ss_pred             CccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence            467999999999976531   3443 2689999999999999999999999987      48888763

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=121.80  Aligned_cols=77  Identities=22%  Similarity=0.368  Sum_probs=66.9

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .++|+||+.++ .++ +.|+.+.||.+|||.|....     +.|  +++++|||+||+|+|++||..|||.+|      .
T Consensus        15 ~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f-----~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg------~   79 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRF-----GAP--PDQLVLIYAGRILKDDDTLKQYGIQDG------H   79 (493)
T ss_pred             eeEEEEecCCc-cee-EecccchHHHHHHHHHHHhc-----CCC--hhHeeeeecCccccChhhHHHcCCCCC------c
Confidence            48899999888 666 99999999999999998653     344  699999999999999999999999987      5


Q ss_pred             EEEEEeCCCCch
Q 033465           87 TMHVVVQPPSTE   98 (118)
Q Consensus        87 tmhlv~~~~~~~   98 (118)
                      |+|||++.....
T Consensus        80 TvHLVik~~~~~   91 (493)
T KOG0010|consen   80 TVHLVIKSQPRP   91 (493)
T ss_pred             EEEEEeccCCCC
Confidence            999999986443

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.50  E-value=4.8e-14  Score=115.65  Aligned_cols=68  Identities=26%  Similarity=0.395  Sum_probs=59.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |+|+||+.+|+++. ++|++++||.+||++|....  +...+|  +++|||||+||+|+|+.+|++|+|++++
T Consensus         1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~   68 (378)
T TIGR00601         1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD   68 (378)
T ss_pred             CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence            57999999999998 99999999999999997541  111255  5999999999999999999999999875

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.47  E-value=1.5e-13  Score=89.10  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe---CCeecCCCCcccccCCCCCC
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~---~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .|.++. .|++++ +++++++||++||++|++.     .++|  +++|||||   .|+.|+|+.+|++|++++|.
T Consensus         2 ~i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~~-----tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~   67 (74)
T cd01813           2 PVIVKW-GGQEYS-VTTLSEDTVLDLKQFIKTL-----TGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNT   67 (74)
T ss_pred             EEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHH-----HCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCC
Confidence            455554 788888 9999999999999999654     4576  59999997   99999999999999999874

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>smart00213 UBQ Ubiquitin homologues

Probab=99.43  E-value=3.1e-13  Score=82.78  Aligned_cols=63  Identities=29%  Similarity=0.428  Sum_probs=54.9

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      ++|+||+.+ ..+. +++++++||++||++|++.     .++|  ++.|||+|+|+.|+|+.+|++||+++|
T Consensus         1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~-----~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~   63 (64)
T smart00213        1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAEL-----TGIP--VEQQRLIYKGKVLEDDRTLADYNIQDG   63 (64)
T ss_pred             CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence            468888888 6777 9999999999999999755     3555  589999999999999999999999865

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.41  E-value=3.3e-13  Score=108.39  Aligned_cols=67  Identities=21%  Similarity=0.352  Sum_probs=59.7

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      +.|+||++.|.+++ +++.|++||.+||++|...  .+.. .|  .++|+|||+||+|+|+.++.+|++++++
T Consensus         1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~--~g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~   67 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETE--KGPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKK   67 (340)
T ss_pred             CeeEeeeccCceeE-eecCcchhHHHHHHHHHhc--cCCC-Cc--hhhheeeecceeccCCcchhhhccccCc
Confidence            57999999999999 9999999999999999765  2333 56  5999999999999999999999999875

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.37  E-value=1.7e-12  Score=84.45  Aligned_cols=68  Identities=18%  Similarity=0.108  Sum_probs=54.4

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC-CCCcccccCCC-CCCCCCCeE
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSP-LCDIPGGVT   86 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~-D~~tL~~~~i~-~~~~p~~~~   86 (118)
                      +|.=+...|.++. +++++++||++||++|.     +.+++|  +++||| |.|+.|. |+++|++||+. +|+      
T Consensus         4 ~~~~~~~~~~t~~-l~v~~~~TV~~lK~kI~-----~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------   68 (75)
T cd01799           4 SVEDAQSHTVTIW-LTVRPDMTVAQLKDKVF-----LDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGD------   68 (75)
T ss_pred             EEeccccCCCeEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------
Confidence            3333456788888 99999999999999995     446787  589999 9999884 77999999998 443      


Q ss_pred             EEEEE
Q 033465           87 TMHVV   91 (118)
Q Consensus        87 tmhlv   91 (118)
                      ++||.
T Consensus        69 ~~~l~   73 (75)
T cd01799          69 SAFLY   73 (75)
T ss_pred             EEEEE
Confidence            56654

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.22  E-value=4.4e-11  Score=74.01  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             EEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ++..+|..+. +++++++||++||++|+..+     ++|  ++.|||+|.|+.|+|+.+|++|++.++.
T Consensus         2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~-----~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~   62 (69)
T cd01769           2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKE-----GVP--PEQQRLIYAGKILKDDKTLSDYGIQDGS   62 (69)
T ss_pred             eEccCCCEEE-EEECCCChHHHHHHHHHHHH-----CcC--hHHEEEEECCcCCCCcCCHHHCCCCCCC
Confidence            5666899998 99999999999999998664     355  5899999999999999999999999763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.13  E-value=1.3e-10  Score=73.61  Aligned_cols=72  Identities=29%  Similarity=0.381  Sum_probs=59.6

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |+|+++..+|+.+. +.+.+++++..|++++.++     .++|. .+.+||+|.|+.|++++|++++++.++|      +
T Consensus         1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~-----~~i~~-~~~~~l~fdG~~L~~~~T~~~~~ied~d------~   67 (72)
T PF11976_consen    1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEK-----KGIPP-EESIRLIFDGKRLDPNDTPEDLGIEDGD------T   67 (72)
T ss_dssp             EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHH-----HTTTT--TTEEEEETTEEE-TTSCHHHHT-STTE------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHh-----hCCCc-cceEEEEECCEEcCCCCCHHHCCCCCCC------E
Confidence            67999999999998 9999999999999999754     45552 2899999999999999999999999885      6


Q ss_pred             EEEEe
Q 033465           88 MHVVV   92 (118)
Q Consensus        88 mhlv~   92 (118)
                      +++++
T Consensus        68 Idv~I   72 (72)
T PF11976_consen   68 IDVII   72 (72)
T ss_dssp             EEEE-
T ss_pred             EEEEC
Confidence            77753

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.5e-10  Score=103.65  Aligned_cols=75  Identities=19%  Similarity=0.338  Sum_probs=66.7

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      .+|++||+|.++.+ |.++..+||.++|++|+++     ..|+  .+-|||||.||+|.|++++.+|++ +|+      +
T Consensus         3 ~~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~-----~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk------~   67 (1143)
T KOG4248|consen    3 PNVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRAS-----VNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGK------V   67 (1143)
T ss_pred             cceeeeecccceeE-EEechHHHHHHHHHHHHHh-----cccc--cccceeeecceeeccchhhhhccC-CCe------E
Confidence            45899999999999 9999999999999999754     4576  599999999999999999999999 574      8


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +||+-|++++
T Consensus        68 ~hlverppp~   77 (1143)
T KOG4248|consen   68 IHLVERPPPQ   77 (1143)
T ss_pred             EEeeccCCCC
Confidence            9999997665

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.97  E-value=1.5e-09  Score=74.61  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeec-CCCCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKIL-ENNRTLGECRSPLCDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L-~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~   97 (118)
                      ... +++++++||.+||.+|.+..     +.|  +.+|||+|.|+.| +|..||++||+..+      ++++|.+..+..
T Consensus        16 ~~~-L~V~~~~TVg~LK~lImQ~f-----~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~LlideP~~   81 (107)
T cd01795          16 EKA-LLVSANQTLKELKIQIMHAF-----SVA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLKADEPIA   81 (107)
T ss_pred             Cce-EEeCccccHHHHHHHHHHHh-----cCC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEEecCCcc
Confidence            344 89999999999999998652     344  6899999999999 57779999999976      467777765444

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=98.97  E-value=2e-09  Score=73.45  Aligned_cols=88  Identities=24%  Similarity=0.363  Sum_probs=59.0

Q ss_pred             EEEEeCC-CceeeeeecC--CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465           10 IKFRLTD-GSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus        10 i~~~~~~-g~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      |.||+.+ --++. ++++  .++||..||+.|.+.+|.+.     +-..+||||+||+|.|...|+..-...        
T Consensus         3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~~-----s~~rLRlI~~Gr~L~d~t~l~~~l~~~--------   68 (97)
T PF10302_consen    3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPEP-----SRRRLRLIYAGRLLNDHTDLSSELKLP--------   68 (97)
T ss_pred             EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCCC-----ccccEEeeecCcccCccchhhhhhccc--------
Confidence            4555554 33344 7776  89999999999999876432     358999999999999998776443221        


Q ss_pred             EEEEEeCCCCchhhhhhhc-cCCCCCCeEEee
Q 033465           87 TMHVVVQPPSTEKAEKKAA-SQPKQNKCVCVI  117 (118)
Q Consensus        87 tmhlv~~~~~~~~~~~~~~-~~~~~~~c~C~i  117 (118)
                            .......+++++. ......+.+|+|
T Consensus        69 ------~~~~~~~~gk~~~~~~~~~~yIhCsI   94 (97)
T PF10302_consen   69 ------TARSSKGKGKAPERQEAPRIYIHCSI   94 (97)
T ss_pred             ------cccCccccCcCccCCCCCeEEEEEec
Confidence                  1112333444443 345678999987

They contain a characteristic GFDRL sequence motif.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.90  E-value=9.4e-09  Score=67.92  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             eEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE-EeCCe-----ec-CCCCcccccCCCCC
Q 033465            8 LEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAGK-----IL-ENNRTLGECRSPLC   79 (118)
Q Consensus         8 i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-I~~Gk-----~L-~D~~tL~~~~i~~~   79 (118)
                      +.|.|... +....+ ..++++.||.+||++++..     .++|  ++.||| +|.|+     .| +|.++|++|++.+|
T Consensus         2 v~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~-----~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg   73 (84)
T cd01789           2 VTVNITSSADSFSFE-KKYSRGLTIAELKKKLELV-----VGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG   73 (84)
T ss_pred             EEEEEEeCCCceeee-EecCCCCcHHHHHHHHHHH-----HCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC
Confidence            34444443 333444 6699999999999999543     4665  589999 58999     45 78889999999988


Q ss_pred             CCCCCeEEEEEEeC
Q 033465           80 DIPGGVTTMHVVVQ   93 (118)
Q Consensus        80 ~~p~~~~tmhlv~~   93 (118)
                            .++|++-.
T Consensus        74 ------~~IhVvD~   81 (84)
T cd01789          74 ------CRIHVIDV   81 (84)
T ss_pred             ------CEEEEEeC
Confidence                  37887653

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.82  E-value=3.6e-08  Score=60.14  Aligned_cols=72  Identities=29%  Similarity=0.417  Sum_probs=61.2

Q ss_pred             EEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEE
Q 033465           10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH   89 (118)
Q Consensus        10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmh   89 (118)
                      +.+++..|++.. +++.+..+|..+|.+|..     ..++|  .++|+|.|.|+.|+|..+|.+|+|..+      .++|
T Consensus         2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~-----~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~   67 (75)
T KOG0001|consen    2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRD-----KEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLH   67 (75)
T ss_pred             EEEEecCCCEEE-EEecCCCHHHHHHHHHHh-----hcCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEE
Confidence            456678899998 999999999999999953     35666  589999999999999999999999865      4888


Q ss_pred             EEeCCC
Q 033465           90 VVVQPP   95 (118)
Q Consensus        90 lv~~~~   95 (118)
                      ++.+..
T Consensus        68 l~~~~~   73 (75)
T KOG0001|consen   68 LVLSLR   73 (75)
T ss_pred             EEEecC
Confidence            877664

>PLN02560 enoyl-CoA reductase

Probab=98.69  E-value=4.2e-08  Score=78.78  Aligned_cols=78  Identities=19%  Similarity=0.303  Sum_probs=58.8

Q ss_pred             eEEEEEeCCCcee--eeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC---C----eecCCCCcccccCCCC
Q 033465            8 LEIKFRLTDGSDI--GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G----KILENNRTLGECRSPL   78 (118)
Q Consensus         8 i~i~~~~~~g~~~--~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~---G----k~L~D~~tL~~~~i~~   78 (118)
                      +.|.++..+|+.+  ..+++++++||++||++|.++     .++. ++++|||++.   |    +.|+|+++|+++|+.+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~   74 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----KKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD   74 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----cCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence            3567777778887  238999999999999999754     2221 2589999983   4    4899999999999987


Q ss_pred             CCCCCCeEEEEEEeCCCCchh
Q 033465           79 CDIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        79 ~~~p~~~~tmhlv~~~~~~~~   99 (118)
                      +      ++  +.++-.|+|-
T Consensus        75 g------st--Ly~kDLGpQi   87 (308)
T PLN02560         75 G------GT--VVFKDLGPQV   87 (308)
T ss_pred             C------ce--EEEEeCCCcC
Confidence            6      34  4466667664

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.65  E-value=7.9e-08  Score=67.38  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCCe
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGV   85 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~~   85 (118)
                      ++.|.||-....-+  ++..+++||.+||++|.     +--..|  ++.|||+-.+.+|+|++||++||+..... +..+
T Consensus         2 dvFlmIrR~KTTiF--~dakes~tVlelK~~ie-----gI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p   72 (119)
T cd01788           2 DVFLMIRRHKTTIF--TDAKESTTVYELKRIVE-----GILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP   72 (119)
T ss_pred             ceEEEEEecceEEE--eecCCcccHHHHHHHHH-----HHhcCC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence            46677776544333  79999999999999994     333344  69999997778999999999999943211 3334


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                      .++-|.+|.
T Consensus        73 A~vgLa~r~   81 (119)
T cd01788          73 ATVGLAFRS   81 (119)
T ss_pred             CeEEEEEec
Confidence            677777774

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.53  E-value=2.8e-07  Score=59.62  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             CCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--EeCCeecCCCCcccccCCCCC
Q 033465           26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKL--ISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus        26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      +++.||.+||+.|.+++    ...+  +++|||  ++.|+.|.|+++|+++|+.+|
T Consensus        20 ~~~aTV~dlk~~i~~~~----~~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g   69 (77)
T cd01801          20 SGDATIADLKKLIAKSS----PQLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAG   69 (77)
T ss_pred             CCCccHHHHHHHHHHHc----CCCC--cceeEEEeCCCCcccCCcccHhhcCCCCC
Confidence            58899999999998653    1222  478777  699999999999999999876

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.49  E-value=5.5e-07  Score=59.36  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=52.3

Q ss_pred             eEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC----Ce----ecCCCCcccccCCC
Q 033465            8 LEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA----GK----ILENNRTLGECRSP   77 (118)
Q Consensus         8 i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~----Gk----~L~D~~tL~~~~i~   77 (118)
                      |.|.|.....  ...+ ..++++.||.+||++|...     .|+|  ++.|||.|.    |.    ..+|..+|.+||+.
T Consensus         2 v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~-----~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~   73 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKL-----TGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK   73 (87)
T ss_dssp             EEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHH-----HTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred             EEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHH-----hCCC--cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence            5666666544  4777 9999999999999999644     4676  599999776    22    33688899999999


Q ss_pred             CCCCCCCeEEEEEEe
Q 033465           78 LCDIPGGVTTMHVVV   92 (118)
Q Consensus        78 ~~~~p~~~~tmhlv~   92 (118)
                      +|      .++|+.-
T Consensus        74 dg------~~i~V~D   82 (87)
T PF14560_consen   74 DG------MRIHVVD   82 (87)
T ss_dssp             TT------EEEEEEE
T ss_pred             CC------CEEEEEe
Confidence            87      4777653

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.22  E-value=1e-05  Score=46.28  Aligned_cols=60  Identities=32%  Similarity=0.436  Sum_probs=50.1

Q ss_pred             EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      +..+|.... +.++++.|+.+||++|.++++     .+  ++.++|.+.|+.+++...+.++++..++
T Consensus         3 ~~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~-----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (69)
T cd00196           3 KLNDGKTVE-LLVPSGTTVADLKEKLAKKLG-----LP--PEQQRLLVNGKILPDSLTLEDYGLQDGD   62 (69)
T ss_pred             EecCCCEEE-EEcCCCCcHHHHHHHHHHHHC-----cC--hHHeEEEECCeECCCCCcHHHcCCCCCC
Confidence            334677787 899999999999999987742     33  5899999999999999988889998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.9e-05  Score=64.28  Aligned_cols=64  Identities=25%  Similarity=0.377  Sum_probs=50.2

Q ss_pred             eEEEEEe-CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            8 LEIKFRL-TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         8 i~i~~~~-~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      +.|.|+- .....++ ++|+.+++|.+||+.++.+     .++|  ++++|+||+||.|.|+.++..+.+...
T Consensus         3 ~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~-----~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qq   67 (446)
T KOG0006|consen    3 VLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKR-----QGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQ   67 (446)
T ss_pred             EEEEeCCccccCcee-EEEecCCCHHHHHHHHHHh-----hCCC--hhheEEEEeccccccCceeeccccccc
Confidence            3444542 2344565 8999999999999999754     4676  599999999999999999998888753

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.91  E-value=0.00014  Score=46.90  Aligned_cols=71  Identities=30%  Similarity=0.410  Sum_probs=54.0

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCCC--CcccccCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILENN--RTLGECRSP   77 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D~--~tL~~~~i~   77 (118)
                      +..++.+.|.||+.+|.++. ..|.+++||.+|.+.|....    . .+. ....+|+  |--|.|.+.  .||+++|+.
T Consensus         1 ~~~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~----~-~~~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~   73 (82)
T PF00789_consen    1 SEESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQL----F-SPE-ESDFELITAFPRRELTDEDSKTLEEAGLL   73 (82)
T ss_dssp             -STSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHH----H-CTT-TSSEEEEESSSTEECCSTTTSBTCCCTTS
T ss_pred             CCCCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhc----C-CCC-CccEEEEeCCCCcCCCccccccHHHhcCC
Confidence            35678899999999999998 99999999999999997652    1 111 1237776  566777544  599999887


Q ss_pred             CC
Q 033465           78 LC   79 (118)
Q Consensus        78 ~~   79 (118)
                      .+
T Consensus        74 p~   75 (82)
T PF00789_consen   74 PS   75 (82)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.90  E-value=3.2e-05  Score=50.87  Aligned_cols=65  Identities=22%  Similarity=0.286  Sum_probs=38.0

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe----ec--CCCCcccccCCCCC
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK----IL--ENNRTLGECRSPLC   79 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk----~L--~D~~tL~~~~i~~~   79 (118)
                      +.+-|+||..+|...  +++++++|+.+|+++|.+..+     +|  .+.+.| |..+    .|  .+..+|+++||+.|
T Consensus         3 ~~milRvrS~dG~~R--ie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHG   72 (80)
T PF11543_consen    3 SSMILRVRSKDGMKR--IEVSPSSTLSDLKEKISEQLS-----IP--DSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHG   72 (80)
T ss_dssp             ---EEEEE-SSEEEE--EEE-TTSBHHHHHHHHHHHS----------TTT----BSSGGGGGCSSS-TT-CCCCT---TT
T ss_pred             ccEEEEEECCCCCEE--EEcCCcccHHHHHHHHHHHcC-----CC--CcceEE-EecCCCCcccccCCcCCHHHcCCCCc
Confidence            468899999999665  799999999999999987642     33  245554 2222    34  57889999999999


Q ss_pred             C
Q 033465           80 D   80 (118)
Q Consensus        80 ~   80 (118)
                      |
T Consensus        73 d   73 (80)
T PF11543_consen   73 D   73 (80)
T ss_dssp             -
T ss_pred             c
Confidence            6

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.84  E-value=5.6e-05  Score=49.52  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC---Ce--ecCCCCcccccCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---GK--ILENNRTLGECRSP   77 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~---Gk--~L~D~~tL~~~~i~   77 (118)
                      |+++++-..+.... +.++|..+|..+|++|+..|     +.   ..+|||-|.   |+  .|.+..+|++|||=
T Consensus         1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~-----~~---~g~qrLsfQepgg~rqlL~s~~sLA~yGiF   66 (80)
T cd01811           1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSR-----NC---SGLQRLSFQEPGGERQLLSSRKSLADYGIF   66 (80)
T ss_pred             CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhh-----Cc---ccceEEEeecCCcccccccccccHhhhcce
Confidence            57788888888998 99999999999999998776     34   369999985   33  67899999999995

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=97.74  E-value=0.00036  Score=45.59  Aligned_cols=67  Identities=21%  Similarity=0.326  Sum_probs=52.9

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec-CCCCcccccCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL-ENNRTLGECRSPL   78 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L-~D~~tL~~~~i~~   78 (118)
                      +....|.||+.+|+++. ..|..++||++|.+.|..+.|...      .....|.  |=.|.| +++.||.++|+..
T Consensus         2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~------~~~f~L~t~fP~k~l~~~~~Tl~eagL~~   71 (79)
T cd01770           2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFA------ARPFTLMTAFPVKELSDESLTLKEANLLN   71 (79)
T ss_pred             CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCC------CCCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence            45789999999999998 999999999999999987643211      2455665  667877 4577999999984

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.52  E-value=0.00021  Score=48.99  Aligned_cols=75  Identities=20%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecCCCCcccccCCCCCCC-CC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILENNRTLGECRSPLCDI-PG   83 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~D~~tL~~~~i~~~~~-p~   83 (118)
                      ++.+.+|-.... +- +..+++.||-+||.+++.-     -..|  ++.|||.-..  ..|+|.+||+++|+..... |.
T Consensus         2 ~~f~~VrR~ktt-if-~da~es~tV~elK~~l~gi-----~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q   72 (110)
T KOG4495|consen    2 DVFLRVRRHKTT-IF-TDAKESSTVFELKRKLEGI-----LKRP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ   72 (110)
T ss_pred             ceeeeeeeccee-EE-eecCccccHHHHHHHHHHH-----HhCC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence            456677664443 33 7889999999999999532     2344  6999998855  4889999999999864322 44


Q ss_pred             CeEEEEE
Q 033465           84 GVTTMHV   90 (118)
Q Consensus        84 ~~~tmhl   90 (118)
                      .+.++-|
T Consensus        73 ~pA~vgL   79 (110)
T KOG4495|consen   73 APATVGL   79 (110)
T ss_pred             CCceeee
Confidence            4444443

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0014  Score=44.97  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=60.9

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      .-|+|+|+--+|.++. |.+--++...-|.+...++     .+.+  .+++|++|.|+.+.+.+|-+++++.++|     
T Consensus        19 ~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r-----~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D-----   85 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCER-----QGLS--MNSLRFLFDGQRIRETHTPADLEMEDGD-----   85 (99)
T ss_pred             ceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHH-----cCCc--cceEEEEECCcCcCCCCChhhhCCcCCc-----
Confidence            5578888776677766 9999999999999988644     4554  5999999999999999999999999987     


Q ss_pred             EEEEEEeCCC
Q 033465           86 TTMHVVVQPP   95 (118)
Q Consensus        86 ~tmhlv~~~~   95 (118)
                       .|-++..-.
T Consensus        86 -~Iev~~~q~   94 (99)
T KOG1769|consen   86 -EIEVVQEQT   94 (99)
T ss_pred             -EEEEEeecc
Confidence             455554433

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.42  E-value=0.00046  Score=44.69  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=48.3

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE-eCCeecCCCCcccccCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-SAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI-~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .++|+|...+|..+. +.++.+.+|++|...|.+..-......+ .....+|. -.|+.|+++.+|+++|+.+|+
T Consensus         2 ~~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd   74 (79)
T PF08817_consen    2 LCRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD   74 (79)
T ss_dssp             EEEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred             EEEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence            367788776678999 9999999999999999875421111111 11257887 789999999999999999996

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=97.35  E-value=0.0023  Score=42.37  Aligned_cols=66  Identities=20%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecC--------CCCccccc
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE--------NNRTLGEC   74 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~--------D~~tL~~~   74 (118)
                      .+.++|.||+.+|.++. -.|..++||++|...|...     ..   .+...+|+++=  |.+.        .+.||.++
T Consensus         2 ~~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~~-----~~---~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea   72 (85)
T cd01774           2 PDTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFSL-----KE---TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA   72 (85)
T ss_pred             CceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhC-----CC---CCCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence            46799999999999998 9999999999999999532     11   24678888877  7885        36799999


Q ss_pred             CCCCC
Q 033465           75 RSPLC   79 (118)
Q Consensus        75 ~i~~~   79 (118)
                      ||...
T Consensus        73 GL~~s   77 (85)
T cd01774          73 GLSNS   77 (85)
T ss_pred             CCCCc
Confidence            99843

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=97.08  E-value=0.0057  Score=39.15  Aligned_cols=63  Identities=22%  Similarity=0.337  Sum_probs=49.5

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSPL   78 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~~   78 (118)
                      +..|.||+.+|+++. ..|..++||.+|.+.|......        ....+|+  |-.|.|.   ++.||.++|+..
T Consensus         2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~   69 (77)
T cd01767           2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN   69 (77)
T ss_pred             cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence            578999999999998 9999999999999999765321        2455665  4456674   477999999983

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.99  E-value=0.0062  Score=45.15  Aligned_cols=84  Identities=18%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             eEEEEEeCCC----ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC-Ceec--CCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA-GKIL--ENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~-Gk~L--~D~~tL~~~~i~~~~   80 (118)
                      |+|.|.+.+|    .++. +.+++++||.+|+.+|.+.     .+.|. ..++-|.+. |+.|  .++..++++--...+
T Consensus         1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~-----~~~~~-~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSER-----LPIPS-SSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD   73 (162)
T ss_pred             CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhh-----cCCCc-cceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence            5788999999    5787 9999999999999999654     33442 222345442 3444  455566655443221


Q ss_pred             CCCCeEEEEEEeCCCCchhh
Q 033465           81 IPGGVTTMHVVVQPPSTEKA  100 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~~~~~~  100 (118)
                        ...++++|.++..|+...
T Consensus        74 --~~~~~l~l~~rl~GGKGG   91 (162)
T PF13019_consen   74 --SDFITLRLSLRLRGGKGG   91 (162)
T ss_pred             --CCceEEEEEEeccCCCcc
Confidence              134789999999999774

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.96  E-value=0.0067  Score=39.12  Aligned_cols=65  Identities=25%  Similarity=0.306  Sum_probs=49.2

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC---CCcccccCCCC
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSPL   78 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D---~~tL~~~~i~~   78 (118)
                      +..+|.||+.+|.++. ..|.+++||.+|.+.|....     +..  ....+|+  |-.|.|.+   +.||.++|+..
T Consensus         3 ~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~-----~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p   72 (80)
T smart00166        3 DQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAAL-----TDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLP   72 (80)
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcc-----cCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCC
Confidence            5789999999999998 99999999999999995432     111  2345554  55667754   46999999863

Present in FAF1 and Shp1p.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=96.95  E-value=0.0087  Score=38.81  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC---CCcccccCCCC
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN---NRTLGECRSPL   78 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D---~~tL~~~~i~~   78 (118)
                      .+.+|.||+.+|.++. ..|+.++|+++|.+.|...+..        ....+|+  |=-|.+.+   +.||.++|+..
T Consensus         3 ~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~P   71 (79)
T cd01772           3 TETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVP   71 (79)
T ss_pred             cEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCC
Confidence            4678999999999998 8999999999999999765421        1334554  44567753   57999999984

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00034  Score=57.25  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             ceeEEEEEeCC--CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            6 DQLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         6 ~~i~i~~~~~~--g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      -.+.+.++..+  -+..+ +..+-..||++||.++..=.|.    .|. +..|||||+||.|.|...|++.=++..+   
T Consensus         8 ~~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~lrkq~k---   78 (391)
T KOG4583|consen    8 FPVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK---   78 (391)
T ss_pred             cceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHHHHHHH---
Confidence            34555565554  44455 6667899999999999766553    444 5799999999999999999987544322   


Q ss_pred             CeEEEEEEeCCCCc
Q 033465           84 GVTTMHVVVQPPST   97 (118)
Q Consensus        84 ~~~tmhlv~~~~~~   97 (118)
                       -.+.|+|...+..
T Consensus        79 -~Hv~hlvcnsk~v   91 (391)
T KOG4583|consen   79 -EHVKHLVCNSKEV   91 (391)
T ss_pred             -HHHHHHhcCCCCC
Confidence             1345666554433

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.29  E-value=0.035  Score=36.47  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |.+-|+.-+|.++. +.++.-.+|..|-..+|+...  .+-.+.+-.++|..-.+++|.++..|.+|+|.+||
T Consensus         7 VTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD   76 (81)
T COG5417           7 VTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD   76 (81)
T ss_pred             EEEEeEecCCceEE-EeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence            45556666799999 999999999999888876521  22223333799999999999999999999999997

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0075  Score=46.61  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=52.9

Q ss_pred             eeEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            7 QLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         7 ~i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      +..++.++. +++.+. +.+...+||.++|.++.++     ++..  +-.||+.|+|++|-|..-|++|+|..+
T Consensus       145 e~~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aa-----eg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg  210 (231)
T KOG0013|consen  145 EPILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAA-----EGVD--PLSQRIFFSGGVLVDKTDLEECKIEKG  210 (231)
T ss_pred             CcchHHHhhhhhhhee-ecccCcCcHHHHHHHHHHh-----hccc--hhhheeeccCCceeccccceeeeecCC
Confidence            345555555 677887 8888999999999999755     3332  479999999999999999999999976

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.012  Score=49.98  Aligned_cols=56  Identities=13%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             CCceeeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465           16 DGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus        16 ~g~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      .|+.+. ++ ++.++|+..+|.++..     ..+.|  |++||+.+.|+.|.|+--+...+|++|
T Consensus        11 ~gk~y~-v~~l~~d~t~~vlKaqlf~-----LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn   67 (473)
T KOG1872|consen   11 GGKKYP-VETLSTDETPSVLKAQLFA-----LTGVP--PERQKVMVKGGLAKDDVDWGALQIKPN   67 (473)
T ss_pred             cCcccc-ceeccCCCchHHHHHHHHH-----hcCCC--ccceeEEEecccccccccccccccCCC
Confidence            566776 66 9999999999999963     35555  699999999999999988999999976

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=95.43  E-value=0.23  Score=32.43  Aligned_cols=67  Identities=22%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~~   78 (118)
                      ++..++|.||+.+|.++. -.|..++++++|-..|..+      +.+  ....+|+  |==|.+.   .+.||.++|+..
T Consensus         1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~------~~~--~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p   71 (80)
T cd01771           1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK------GYP--IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP   71 (80)
T ss_pred             CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence            467899999999999998 9999999999999999643      222  2466664  4445563   356999999975


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      .
T Consensus        72 ~   72 (80)
T cd01771          72 Q   72 (80)
T ss_pred             C
Confidence            3

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=95.13  E-value=0.14  Score=33.92  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec---CCCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L---~D~~tL~~~~i~~   78 (118)
                      +.+.-+|.||+.+|.+++ -.|..+.++++|-..|...      +.+  ++..+|+  |==|.+   +.+.||.++|+..
T Consensus         2 ~~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~~------g~~--~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P   72 (82)
T cd01773           2 NGPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP   72 (82)
T ss_pred             CCCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc------CCC--CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence            345678999999999999 9999999999999999652      122  3556665  333444   3457999999985


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      .
T Consensus        73 ~   73 (82)
T cd01773          73 Q   73 (82)
T ss_pred             C
Confidence            4

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.07  E-value=0.065  Score=34.71  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc-CCCCCCCCCCeEEEEEEeCCCC
Q 033465           25 FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC-RSPLCDIPGGVTTMHVVVQPPS   96 (118)
Q Consensus        25 v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~-~i~~~~~p~~~~tmhlv~~~~~   96 (118)
                      |.++++|.+|++.|...    .+...  -....|.|.|+.|+|...|++. |++++      .++.++..+=.
T Consensus         1 v~~~d~v~dvrq~L~~~----~~t~~--~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~pYt   61 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAES----PETCY--LTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEPYT   61 (76)
T ss_pred             CChhhHHHHHHHHHHhC----ccccc--eeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecCCC
Confidence            46889999999999643    12222  4789999999999999999888 57754      57888866643

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.0069  Score=38.82  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=47.8

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      ++.++-.-|+.+. +.-.+++||+++|..|+.+-    ...   ++.+.|=--+-+++|.-+|++|.|.+|
T Consensus         3 ev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQt----GT~---~~kivl~k~~~i~kd~I~L~dyeihdg   65 (73)
T KOG3493|consen    3 EVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQT----GTR---PEKIVLKKWYTIFKDHITLSDYEIHDG   65 (73)
T ss_pred             eehhhhhcCceEE-EEeCCcccccCHHHHHHHhh----CCC---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence            3444455688888 88899999999999998651    222   356666555668899999999999876

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.98  E-value=0.13  Score=34.98  Aligned_cols=66  Identities=15%  Similarity=0.270  Sum_probs=53.0

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      -|.|++---+|.++- +.+--+++...|-+....+     .+.  +.+.+|++|.|+.++-++|..++++.++|
T Consensus        24 hinLkvv~qd~telf-FkiKktT~f~klm~af~~r-----qGK--~m~slRfL~dG~rI~~dqTP~dldmEdnd   89 (103)
T COG5227          24 HINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRR-----QGK--NMSSLRFLFDGKRIDLDQTPGDLDMEDND   89 (103)
T ss_pred             ccceEEecCCCCEEE-EEEeccchHHHHHHHHHHH-----hCc--CcceeEEEEcceecCCCCChhhcCCccch
Confidence            366666666788887 9999999998888777654     233  25899999999999999999999998765

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=92.92  E-value=0.26  Score=41.04  Aligned_cols=68  Identities=21%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeec-CCCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKIL-ENNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L-~D~~tL~~~~i~~   78 (118)
                      .+.+-+|.||+.+|.+.- ..|+-+-||.+|+..|...=|.    .+  ...+-|++  =-|.| +|+.||+++|+.+
T Consensus       302 ~~PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~----~~--~~~F~L~~~FPpk~l~D~sqTle~AgL~N  372 (380)
T KOG2086|consen  302 AEPTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPG----DS--STYFILMMAFPPKPLSDDSQTLEEAGLLN  372 (380)
T ss_pred             CCCcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCC----Cc--CCceeeeecCCCcccCCcchhHHhccchh
Confidence            356678999999999997 9999999999999999865332    21  23444443  34566 6777999999984

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=91.94  E-value=1.7  Score=27.24  Aligned_cols=71  Identities=20%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             EEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe----CC--eecCCCCcccccCCCCCCCCCCe
Q 033465           12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS----AG--KILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus        12 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~----~G--k~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      |++.+|...+ +++++++|+.+|=+.|.++.     ++. +.+..=|.|    .|  ..|+.+++|.+.....+    .+
T Consensus         1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~l-----~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~   69 (80)
T PF09379_consen    1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDKL-----GLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP   69 (80)
T ss_dssp             EEESSEEEEE-EEEETTSBHHHHHHHHHHHH-----TTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred             CCCcCCCcEE-EEEcCCCcHHHHHHHHHHHc-----CCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence            5678999998 99999999999999997652     343 256777777    33  48898999988866522    13


Q ss_pred             EEEEEEeC
Q 033465           86 TTMHVVVQ   93 (118)
Q Consensus        86 ~tmhlv~~   93 (118)
                      .++++-++
T Consensus        70 ~~l~frvk   77 (80)
T PF09379_consen   70 FTLYFRVK   77 (80)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEEE
Confidence            56776654

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=90.55  E-value=1.6  Score=27.20  Aligned_cols=52  Identities=13%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             eeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           20 IGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        20 ~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .+ +++++..||.+|.+.+..++|.. ....  ....++..+|+...+     +..+.+||
T Consensus        18 ~~-~~~~~~~tv~~ll~~l~~~~~~~-~~~~--~~~~~v~vNg~~v~~-----~~~l~~gD   69 (80)
T cd00754          18 EE-LELPEGATVGELLDALEARYPGL-LEEL--LARVRIAVNGEYVRL-----DTPLKDGD   69 (80)
T ss_pred             EE-EECCCCCcHHHHHHHHHHHCchH-HHhh--hhcEEEEECCeEcCC-----CcccCCCC
Confidence            44 78888999999999998887642 1111  257788889998873     34577776

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=90.52  E-value=1.6  Score=26.98  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ... +.++...||.+|.+.+..++|...   .  ....++..+|++..+ . -.+..++++|
T Consensus        13 ~~~-~~~~~~~tv~~ll~~l~~~~p~~~---~--~~~~~v~vN~~~v~~-~-~~~~~l~~gD   66 (77)
T PF02597_consen   13 EEE-IEVPEGSTVRDLLEALAERYPELA---L--RDRVAVAVNGEIVPD-D-GLDTPLKDGD   66 (77)
T ss_dssp             EEE-EEESSTSBHHHHHHHHCHHTGGGH---T--TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred             CeE-EecCCCCcHHHHHHHHHhhccccc---c--CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence            344 788999999999999998877544   1  378999999999988 2 4445567765

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PRK06437 hypothetical protein; Provisional

Probab=89.93  E-value=2.7  Score=26.27  Aligned_cols=48  Identities=8%  Similarity=0.016  Sum_probs=35.9

Q ss_pred             CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .+++.+ +++++..||++|=+.+         +++  +..+-++.+|+++.     .+.-+++||
T Consensus         9 g~~~~~-~~i~~~~tv~dLL~~L---------gi~--~~~vaV~vNg~iv~-----~~~~L~dgD   56 (67)
T PRK06437          9 GHINKT-IEIDHELTVNDIIKDL---------GLD--EEEYVVIVNGSPVL-----EDHNVKKED   56 (67)
T ss_pred             CCcceE-EEcCCCCcHHHHHHHc---------CCC--CccEEEEECCEECC-----CceEcCCCC
Confidence            445565 8889999999998777         243  47888999999997     344567776

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=89.24  E-value=1.1  Score=28.54  Aligned_cols=56  Identities=14%  Similarity=0.120  Sum_probs=34.8

Q ss_pred             CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        16 ~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .|.....++++...||++|++.+..+.|.-....    ....+..+|+...++     .-+.+||
T Consensus        16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~----~~~~vavN~~~v~~~-----~~l~dgD   71 (82)
T PLN02799         16 TGVSDMTLELPAGSTTADCLAELVAKFPSLEEVR----SCCVLALNEEYTTES-----AALKDGD   71 (82)
T ss_pred             hCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHh----hCcEEEECCEEcCCC-----cCcCCCC
Confidence            3533333788899999999999976644211111    234577788886544     3456675

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=89.06  E-value=3.7  Score=26.00  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             CCceeeeeecCCc-ccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           16 DGSDIGPKSFPAA-TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        16 ~g~~~~~~~v~~~-~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .|.....+++++. .||.+|++.+.+..|....    ....+++..+|+...++     ..+++||
T Consensus        13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~----~~~~~~v~vn~~~v~~~-----~~l~dgD   69 (80)
T TIGR01682        13 AGTDEETLELPDESTTVGELKEHLAKEGPELAA----SRGQVMVAVNEEYVTDD-----ALLNEGD   69 (80)
T ss_pred             hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhh----hccceEEEECCEEcCCC-----cCcCCCC
Confidence            3554323788876 8999999999887662111    12467888899988753     4667775

The C-terminal Gly-Gly of this model is critical to function.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=2  Score=33.37  Aligned_cols=58  Identities=17%  Similarity=0.271  Sum_probs=42.2

Q ss_pred             eecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE-EeCC-----eec-CCCCcccccCCCCCCCCCCeEEEEEEeC
Q 033465           23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL-ISAG-----KIL-ENNRTLGECRSPLCDIPGGVTTMHVVVQ   93 (118)
Q Consensus        23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL-I~~G-----k~L-~D~~tL~~~~i~~~~~p~~~~tmhlv~~   93 (118)
                      ..++++.||+++|.+++-     ..+.+  ++.++| +|.|     -.| +++..|..|+..+|      ..+|++-.
T Consensus        17 kr~~~~ltl~q~K~KLe~-----~~G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~   81 (234)
T KOG3206|consen   17 KRLSNSLTLAQFKDKLEL-----LTGTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDS   81 (234)
T ss_pred             hhcCCcCcHHHHHhhhhh-----hhCCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEec
Confidence            677899999999999952     34444  588888 7777     245 46668888888877      46776543

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=86.84  E-value=6.2  Score=25.27  Aligned_cols=60  Identities=17%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             CCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCC-CC---CCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           16 DGS-DIGPKSFPAATSVATLKESVLSQWPKEKENG-PR---TVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        16 ~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~-p~---~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .|. ..+ ++++ ..||.+|.+.+.+++|.....+ ..   --..+++..+|+..++...   ..+++||
T Consensus        13 ~g~~~~~-v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd   77 (88)
T TIGR01687        13 TGKKSEE-IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD   77 (88)
T ss_pred             hCCceEE-EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence            354 344 7776 8999999999999887533211 00   0135888889998865432   4577776

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=85.76  E-value=2.2  Score=34.15  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=44.8

Q ss_pred             eecCCcccHHHHHHHhhhhCCCcccCCC-CCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCCchh
Q 033465           23 KSFPAATSVATLKESVLSQWPKEKENGP-RTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        23 ~~v~~~~TV~~lK~~I~~~wp~~~~~~p-~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~~~   99 (118)
                      .......|++++++.+.++   +....| .....+|+--.|+.|-|+.+|++++...+.      +  +.++-.|||-
T Consensus        17 ~~~s~~~ti~d~~~~~~~~---~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~------~--i~vKDLGpQI   83 (297)
T KOG1639|consen   17 KDLSGSETIDDLLKAISAK---NLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA------T--IYVKDLGPQI   83 (297)
T ss_pred             ecCCCCCcHHHHHHHHHHh---hhccCccchhheeeccCCCccccchhHHHHhccCCCC------E--EEEeccCCcc
Confidence            4556788999999888754   111111 112445556689999999999999998653      3  4577777765

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=85.29  E-value=5  Score=25.26  Aligned_cols=58  Identities=10%  Similarity=0.015  Sum_probs=37.8

Q ss_pred             eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465           14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus        14 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      ..+++++. +.+.|++++.+|-+..-++.     +..  +++-.|.|++|.|+-+.++.-.|++.|
T Consensus         3 ~~~~rr~~-vkvtp~~~l~~VL~eac~k~-----~l~--~~~~~L~h~~k~ldlslp~R~snL~n~   60 (65)
T PF11470_consen    3 CYNFRRFK-VKVTPNTTLNQVLEEACKKF-----GLD--PSSYDLKHNNKPLDLSLPFRLSNLPNN   60 (65)
T ss_dssp             -TTS-EEE-E---TTSBHHHHHHHHHHHT-----T----GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred             ccCCcEEE-EEECCCCCHHHHHHHHHHHc-----CCC--ccceEEEECCEEeccccceeecCCCCC
Confidence            45788888 99999999999877776542     333  468899999999999999988899876

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=83.99  E-value=4.2  Score=25.51  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG   62 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G   62 (118)
                      ++.+|+...++.... +.++.+.|..+|+.+|.+.++..       ...++|-|..
T Consensus         1 t~~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~~~-------~~~~~l~Y~D   48 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFGLL-------DEDFQLKYKD   48 (84)
T ss_dssp             SEEEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHTTS-------TSSEEEEEEE
T ss_pred             CEEEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhCCC-------CccEEEEeeC
Confidence            467888887776765 78999999999999998876422       3688888753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00295 B41 Band 4

Probab=82.46  E-value=3.3  Score=29.86  Aligned_cols=64  Identities=19%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC------eecCCCCcccccCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KILENNRTLGECRSP   77 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G------k~L~D~~tL~~~~i~   77 (118)
                      .+.++|.+.+|.... +.+++++||.+|-+.|..+     -+++. ....-|.+..      +.|+...+|.+....
T Consensus         3 ~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~-----~~l~~-~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~   72 (207)
T smart00295        3 PRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRK-----LGIRE-SEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK   72 (207)
T ss_pred             cEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCCc-cceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence            577889999999998 9999999999999999765     23432 4555554421      456666666655543

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>smart00666 PB1 PB1 domain

Probab=82.29  E-value=6.3  Score=24.68  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA   61 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~   61 (118)
                      +.+|++. .|.... +.+++..|-.+|+.+|.+..+     .+  ...++|-|.
T Consensus         2 ~~vK~~~-~~~~~~-~~~~~~~s~~dL~~~i~~~~~-----~~--~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRY-GGETRR-LSVPRDISFEDLRSKVAKRFG-----LD--NQSFTLKYQ   46 (81)
T ss_pred             ccEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHhC-----CC--CCCeEEEEE
Confidence            5677776 566666 999999999999999987643     21  256777776

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=82.11  E-value=8.9  Score=23.93  Aligned_cols=45  Identities=13%  Similarity=0.015  Sum_probs=32.9

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ... +++++..||.+|-+.+.         ++  .....+..+|+++..     +.-+++||
T Consensus        15 ~~~-~~~~~~~tv~~ll~~l~---------~~--~~~v~v~vNg~iv~~-----~~~l~~gD   59 (70)
T PRK08364         15 EKE-IEWRKGMKVADILRAVG---------FN--TESAIAKVNGKVALE-----DDPVKDGD   59 (70)
T ss_pred             ceE-EEcCCCCcHHHHHHHcC---------CC--CccEEEEECCEECCC-----CcCcCCCC
Confidence            444 78889999999998882         33  356888899999854     34467776

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=80.49  E-value=3.6  Score=27.40  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             EEEEeCCCceeeeeecCCcccHHHHHHHhhhhC
Q 033465           10 IKFRLTDGSDIGPKSFPAATSVATLKESVLSQW   42 (118)
Q Consensus        10 i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~w   42 (118)
                      .||+...|+.+. +.+.|+.++.+|++.|.++.
T Consensus         3 FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl   34 (86)
T cd06409           3 FKFKDPKGRVHR-FRLRPSESLEELRTLISQRL   34 (86)
T ss_pred             EEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHh
Confidence            578889999999 99999999999999998774

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
1se9_A	126	Structure Of At3g01050, A Ubiquitin-Fold Protein Fr		2e-42

>pdb|1SE9|A Chain A, Structure Of At3g01050, A Ubiquitin-Fold Protein From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 99/117 (84%), Gaps = 1/117 (0%)
Query: 2   ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
           A V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLISA
Sbjct: 11  AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70
Query: 62  GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           GK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEK EKK    PK NKCVC ++
Sbjct: 71  GKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK-EKKPKGDPKMNKCVCSVM 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	6e-55
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	2e-35
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	6e-29
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-04
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-04
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	3e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	4e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-04
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	4e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	5e-04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-04
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	7e-04
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	8e-04

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score =  166 bits (422), Expect = 6e-55
 Identities = 77/117 (65%), Positives = 99/117 (84%), Gaps = 1/117 (0%)

Query: 2   ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
           A V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLISA
Sbjct: 11  AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 70

Query: 62  GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL 118
           GK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEK EKK    PK NKCVC ++
Sbjct: 71  GKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK-EKKPKGDPKMNKCVCSVM 126

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score =  117 bits (293), Expect = 2e-35
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 6   DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGKI 64
           D + ++  L  G       F    S + + + V   WP + +E    +   ++LI  G+ 
Sbjct: 16  DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 74

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTE-KAEKKAASQPKQNKCVCVIL 118
           L  N TLG  + P     G  T MH+V +    E  ++ +   +       CVIL
Sbjct: 75  LHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRNREKTGESNCCVIL 125

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score =  100 bits (250), Expect = 6e-29
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 6   DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGKI 64
           D + ++  L  G       F    S + + + V   WP + +E    +   ++LI  G+ 
Sbjct: 15  DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 73

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK 109
           L  N TLG  + P     G  T MH+V +    E   +   S P 
Sbjct: 74  LHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRSGPS 114

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 2   ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
              Q  + +   +  G D    +    ++V   KE++      +    P  V + +LI +
Sbjct: 21  LYFQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI-----NKANGIP--VANQRLIYS 73

Query: 62  GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPP 95
           GKIL++++T+         I  G  ++H+V   P
Sbjct: 74  GKILKDDQTVES-----YHIQDG-HSVHLVKSQP 101

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 30  SVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMH 89
           ++   K  +      +  +       +KLI +GK+L++++T+ E     C +  G   + 
Sbjct: 23  TILETKTKL-----AQSISCE--ESQIKLIYSGKVLQDSKTVSE-----CGLKDGDQVVF 70

Query: 90  VVVQPPSTEKAEKKAASQP 108
           +V Q  ST+    +     
Sbjct: 71  MVSQKKSTKTKVTERDPNS 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 24  SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83
           S     SV  LK  +   +P+         +D +LI +GK+L +++ L +          
Sbjct: 25  SGDRGWSVGHLKAHLSRVYPERPR-----PEDQRLIYSGKLLLDHQCLRDLLPKQEKRH- 78

Query: 84  GVTTMHVVVQPPSTEKA 100
               +H+V    S   +
Sbjct: 79  ---VLHLVCNVKSGPSS 92

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 29  TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
           +SV   KE++      ++         + LI AGKIL++  TL +       I  G+ T+
Sbjct: 52  SSVQQFKEAI-----SKRFKSQ--TDQLVLIFAGKILKDQDTLIQ-----HGIHDGL-TV 98

Query: 89  HVVVQPPSTEKAEKKAASQPKQN 111
           H+V++      +  K A+  + +
Sbjct: 99  HLVIKRDPNSSSVDKYAAALEHH 121

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 9  EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN 68
           +   +  G D    +    ++V   KE++      +    P  V + +LI +GKIL+++
Sbjct: 4  SLNIHIKSGQDKWEVNVAPESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDD 56

Query: 69 RTLGECRSPLCDIPGGVTTMHVVVQPP 95
          +T+         I  G  ++H+V   P
Sbjct: 57 QTVES-----YHIQDG-HSVHLVKSQP 77

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 57  KLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPKQN 111
           KLI AGKIL ++  L E       I      + V+V  P        A  +   +
Sbjct: 45  KLIYAGKILNDDTALKE-----YKIDEK-NFVVVMVTKPKAVSTPAPATLEHHHH 93

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 29  TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
            ++  LKE +      ++         + LI AGKIL++  +L +     C +  G  T+
Sbjct: 37  CTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQ-----CGVRDG-LTV 83

Query: 89  HVVVQPPSTEKAEKKAASQP 108
           H+V++        +  AS P
Sbjct: 84  HLVIKRQHRAMGNECPASGP 103

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 35.7 bits (83), Expect = 5e-04
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 15/102 (14%)

Query: 5   QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI 64
            D LE+  +  D          A  +V   KE +         + P   +  +LI  G++
Sbjct: 3   PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRV 54

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAAS 106
           L++++ L E      ++ G    +H+V + P        A+S
Sbjct: 55  LQDDKKLQE-----YNVGGK--VIHLVERAPPQTHLPSGASS 89

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 13/67 (19%)

Query: 29 TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
           ++  LKE +      ++         + LI AGKIL++  +L +     C +  G  T+
Sbjct: 42 CTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQ-----CGVRDG-LTV 88

Query: 89 HVVVQPP 95
          H+V++  
Sbjct: 89 HLVIKRQ 95

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 35.1 bits (81), Expect = 8e-04
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 29 TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTM 88
          ++V   K+ +      +  +       + LI  GKIL +   L +       I  G  T+
Sbjct: 37 SNVRRFKKQI-----SKYLHCN--ADRLVLIFTGKILRDQDILSQ-----RGILDGS-TV 83

Query: 89 HVVVQPPS 96
          HVVV+  S
Sbjct: 84 HVVVRSHS 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	100.0
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.97
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.94
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.81
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.81
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.8
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.8
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.79
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.79
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.79
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.78
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.78
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.78
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.78
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.77
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.77
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.77
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.77
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.77
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.77
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.77
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.76
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.76
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.76
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.76
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.76
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.76
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.75
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.75
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.75
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.74
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.74
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.74
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.74
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.74
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.74
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.74
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.73
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.73
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.73
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.72
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.72
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.71
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.71
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.71
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.71
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.71
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.71
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.71
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.71
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.7
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.7
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.53
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.69
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.69
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.69
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.67
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.66
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.66
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.66
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.65
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.65
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.64
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.64
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.64
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.64
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.62
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.62
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.6
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.6
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.59
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.58
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.55
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.55
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.55
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.55
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.55
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.54
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.51
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.49
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.48
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.44
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.43
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.39
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.36
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.34
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.33
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.32
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.3
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.29
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.29
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.0
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.91
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.8
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.69
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.4
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.31
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.17
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.1
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.09
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.08
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.02
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.74
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.69
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.59
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.51
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.26
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	97.17
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	97.17
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.09
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.92
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.89
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.38
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	95.09
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.42
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	93.62
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	91.28
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	90.49
2v1y_A	108	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.85
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	88.58
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	87.05
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	86.0
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	85.72
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	85.47
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	85.27
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	84.42
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	84.32
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	83.76
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	82.37
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	81.11

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=100.00  E-value=2.7e-35  Score=208.10  Aligned_cols=116  Identities=66%  Similarity=1.107  Sum_probs=92.5

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      |.+++.++|+||+.+|+++.++++++++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus        11 ~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~   90 (126)
T 1se9_A           11 AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL   90 (126)
T ss_dssp             CSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred             hhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence            55778999999999999995599999999999999999999999999986669999999999999999999999999887


Q ss_pred             CCCeEEEEEEeCCCCchhhhhhhccCCCCCCeEEeeC
Q 033465           82 PGGVTTMHVVVQPPSTEKAEKKAASQPKQNKCVCVIL  118 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~~~~~~~~~~~~~~~c~C~i~  118 (118)
                      |+.++||||+++++++.++ |....+.+.++|+|+||
T Consensus        91 ~~~v~tmhlVlrl~g~~kk-kk~~~~pkk~~C~C~Il  126 (126)
T 1se9_A           91 AGAVTTMHVIIQAPVTEKE-KKPKGDPKMNKCVCSVM  126 (126)
T ss_dssp             TTCCEEEEEEECCCSSCCC-C----------------
T ss_pred             cCCcEEEEEEeccCCcccc-ccCCCCCCCCCceEEeC
Confidence            7778999999999998777 66677777899999997

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.97  E-value=4.2e-31  Score=186.21  Aligned_cols=110  Identities=25%  Similarity=0.481  Sum_probs=97.9

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcc-cCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEK-ENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ...+.|.|+||+.+|++++ ++|++++||++||++|+++||.+| +++|.++++|||||+||+|+|++||++|+|+.++ 
T Consensus        13 ~~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~-   90 (125)
T 2gow_A           13 VPADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK-   90 (125)
T ss_dssp             CCTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS-
T ss_pred             CCCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC-
Confidence            4556799999999999998 999999999999999999999995 7786567999999999999999999999999774 


Q ss_pred             CCCeEEEEEEeCCCCchhhh--hhhccCCCCCCeEEeeC
Q 033465           82 PGGVTTMHVVVQPPSTEKAE--KKAASQPKQNKCVCVIL  118 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~~~~--~~~~~~~~~~~c~C~i~  118 (118)
                         .+||||++++.++.+++  +....+...++| |+||
T Consensus        91 ---~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il  125 (125)
T 2gow_A           91 ---TTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL  125 (125)
T ss_dssp             ---EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred             ---ceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence               57999999999988764  566667778999 9997

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.94  E-value=2.1e-26  Score=160.39  Aligned_cols=96  Identities=24%  Similarity=0.415  Sum_probs=84.9

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcc-cCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEK-ENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~-~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      .+.|+|+||+.+|++++ ++|++++||++||++|+++||.+| +++|.++++|||||+||+|+|+.||++|+|+.++   
T Consensus        14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~---   89 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK---   89 (116)
T ss_dssp             SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred             CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence            45699999999999998 999999999999999999999995 5665457999999999999999999999998764   


Q ss_pred             CeEEEEEEeCCCCchhhhhhhc
Q 033465           84 GVTTMHVVVQPPSTEKAEKKAA  105 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~~~~~~~~  105 (118)
                       .+||||++++.++.+++..++
T Consensus        90 -~~tlhLvlr~~~~~~~~~~~~  110 (116)
T 1wgh_A           90 -TTVMHLVARETLPEPNSQGQR  110 (116)
T ss_dssp             -EEEEEEEECSSCSSSCCSSCC
T ss_pred             -ceEEEEEccCCCCCCCccccc
Confidence             579999999999988754443

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.81  E-value=8.7e-20  Score=116.59  Aligned_cols=77  Identities=25%  Similarity=0.205  Sum_probs=69.4

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+|++.+|+++. +++++++||++||++|.+.     .++|  +++|||+|+||.|+|+.+|++|+|.++      
T Consensus         3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------   68 (79)
T 3phx_B            3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------   68 (79)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------
T ss_pred             CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhh-----cCCC--HHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence            5689999999999999 9999999999999999644     5677  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCC
Q 033465           86 TTMHVVVQPPS   96 (118)
Q Consensus        86 ~tmhlv~~~~~   96 (118)
                      .++|++++..|
T Consensus        69 ~~l~l~~rl~G   79 (79)
T 3phx_B           69 STVFMNLRLRG   79 (79)
T ss_dssp             CEEEEEECCBC
T ss_pred             CEEEEEEecCC
Confidence            48999998764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.81  E-value=6.6e-20  Score=123.24  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ++.++-|+|+||+.+|+++. ++++|++||++||++|+     +.+++|  +++|||||+||+|+|..||++|+|++|  
T Consensus        16 ~~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~-----~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg--   85 (93)
T 3plu_A           16 PRGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLS-----LQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ--   85 (93)
T ss_dssp             ----CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTT--
T ss_pred             CCCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHH-----HHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC--
Confidence            46778899999999999999 99999999999999995     457887  599999999999999999999999987  


Q ss_pred             CCCeEEEEEE
Q 033465           82 PGGVTTMHVV   91 (118)
Q Consensus        82 p~~~~tmhlv   91 (118)
                          .|+||.
T Consensus        86 ----stLhL~   91 (93)
T 3plu_A           86 ----TNLELY   91 (93)
T ss_dssp             ----CEEEEE
T ss_pred             ----CEEEEE
Confidence                477875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.80  E-value=2e-19  Score=117.63  Aligned_cols=82  Identities=22%  Similarity=0.330  Sum_probs=70.9

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      ++++.++|+||+.+|+++. +++++++||.+||++|.+.     .++|  +++|||||+||.|+|+.+|++|+| ++   
T Consensus         1 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g---   68 (90)
T 4dwf_A            1 GEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG---   68 (90)
T ss_dssp             CCCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred             CCCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CC---
Confidence            4567899999999999998 9999999999999999654     4676  599999999999999999999999 66   


Q ss_pred             CCeEEEEEEeCCCCchh
Q 033465           83 GGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        83 ~~~~tmhlv~~~~~~~~   99 (118)
                         .++||+++.+++..
T Consensus        69 ---~~i~l~~~~~~~~~   82 (90)
T 4dwf_A           69 ---KVIHLVERAPPQTH   82 (90)
T ss_dssp             ---EEEEEEECCCC---
T ss_pred             ---cEEEEEecCCCCCC
Confidence               58999999876644

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.80  E-value=2.1e-19  Score=118.77  Aligned_cols=86  Identities=22%  Similarity=0.276  Sum_probs=73.1

Q ss_pred             CCCCceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc--CCC
Q 033465            2 ASVQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSP   77 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~--~i~   77 (118)
                      +++...|+|+|++.+|.  ++. +++++++||++||++|++.+|   .++|  +++|||||+||+|+|+.+|++|  +|.
T Consensus         2 ~~~~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~   75 (93)
T 1wgd_A            2 SSGSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQE   75 (93)
T ss_dssp             CCCSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSS
T ss_pred             CCCCcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCC
Confidence            35567799999999988  666 777899999999999987643   2455  5999999999999999999999  998


Q ss_pred             CCCCCCCeEEEEEEeCCCCchh
Q 033465           78 LCDIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        78 ~~~~p~~~~tmhlv~~~~~~~~   99 (118)
                      ++      .++||++++.++.+
T Consensus        76 ~~------~~i~lv~~~~gg~~   91 (93)
T 1wgd_A           76 KR------HVLHLVCNVKSGPS   91 (93)
T ss_dssp             CS------EEEEEECCCCCCCC
T ss_pred             CC------CEEEEEeCCCCCCC
Confidence            76      68999999988753

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.80  E-value=2.4e-19  Score=116.17  Aligned_cols=81  Identities=21%  Similarity=0.323  Sum_probs=72.1

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      +....++|+|++.+|+++. +++++++||.+||++|.+.     .++|  +++|||+|.|+.|+|+.+|++|+|.++   
T Consensus         8 ~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~---   76 (88)
T 3dbh_I            8 GSGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG---   76 (88)
T ss_dssp             SCCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred             CCCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence            4556799999999999998 9999999999999999654     4666  599999999999999999999999987   


Q ss_pred             CCeEEEEEEeCCCCc
Q 033465           83 GGVTTMHVVVQPPST   97 (118)
Q Consensus        83 ~~~~tmhlv~~~~~~   97 (118)
                         .++|++++..++
T Consensus        77 ---~~i~l~~rl~GG   88 (88)
T 3dbh_I           77 ---SVLHLVLRLRGG   88 (88)
T ss_dssp             ---CEEEECCCCCCC
T ss_pred             ---CEEEEEEeCCCC
Confidence               489999998875

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.79  E-value=2.9e-19  Score=116.40  Aligned_cols=77  Identities=22%  Similarity=0.313  Sum_probs=66.9

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ...++.++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||||+||.|+|+.+|++|+| +|  
T Consensus        12 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g--   80 (88)
T 4eew_A           12 VEEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG--   80 (88)
T ss_dssp             ---CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT--
T ss_pred             ecCCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CC--
Confidence            45567899999999999998 9999999999999999654     4676  599999999999999999999999 66  


Q ss_pred             CCCeEEEEEEeC
Q 033465           82 PGGVTTMHVVVQ   93 (118)
Q Consensus        82 p~~~~tmhlv~~   93 (118)
                          .++||++|
T Consensus        81 ----~~i~lv~R   88 (88)
T 4eew_A           81 ----KVIHLVER   88 (88)
T ss_dssp             ----EEEEEEEC
T ss_pred             ----cEEEEEEC
Confidence                58999876

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.79  E-value=2.7e-19  Score=117.40  Aligned_cols=79  Identities=22%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||||+||.|+|+.+|++|+|.++      .+
T Consensus         1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~~   66 (88)
T 4fbj_B            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV   66 (88)
T ss_dssp             CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred             CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhHEEEEECCeECCCCCcHHHcCCCCC------CE
Confidence            57899999999998 9999999999999999654     5676  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCchhh
Q 033465           88 MHVVVQPPSTEKA  100 (118)
Q Consensus        88 mhlv~~~~~~~~~  100 (118)
                      +||+++..++..-
T Consensus        67 l~l~~rl~Gg~~~   79 (88)
T 4fbj_B           67 LHLVLALRGGGGL   79 (88)
T ss_dssp             EEEECBCC-----
T ss_pred             EEEEEECCCCCCC
Confidence            9999999998764

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=6.8e-19  Score=114.10  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=73.9

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      ++...++|+|++.+|+++. +++++++||.+||++|++.     .++|  +++|||+|.|+.|+|+.+|++|+|.++   
T Consensus         3 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g---   71 (87)
T 1wh3_A            3 SGSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS---   71 (87)
T ss_dssp             CCSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred             CCCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHH-----hCCC--hHHEEEEECCEEccCCCCHHHCCCCCC---
Confidence            5677899999999999998 9999999999999999754     4666  599999999999999999999999976   


Q ss_pred             CCeEEEEEEeCCCCch
Q 033465           83 GGVTTMHVVVQPPSTE   98 (118)
Q Consensus        83 ~~~~tmhlv~~~~~~~   98 (118)
                         .++|++++..++.
T Consensus        72 ---~~i~l~~~~~GG~   84 (87)
T 1wh3_A           72 ---DTLILSKKKGSGP   84 (87)
T ss_dssp             ---EEEEEEECSCCCS
T ss_pred             ---CEEEEEEeccCCC
Confidence               5899999998875

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=7.9e-19  Score=114.37  Aligned_cols=84  Identities=24%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             CCCCceeEEEEEeCCC-ceeeee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            2 ASVQDQLEIKFRLTDG-SDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g-~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      ++++..++|+|++.+| +++. + ++++++||.+||++|++.     .++|  +++|||+|.|+.|+|+.+|++|+|.++
T Consensus         2 ~~~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g   73 (89)
T 1wy8_A            2 SSGSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLN   73 (89)
T ss_dssp             CCCSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTT
T ss_pred             CCCCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCC
Confidence            4667889999999999 6888 9 599999999999999654     5676  599999999999999999999999977


Q ss_pred             CCCCCeEEEEEEeCCCCchh
Q 033465           80 DIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        80 ~~p~~~~tmhlv~~~~~~~~   99 (118)
                            .++||++++.++.+
T Consensus        74 ------~~i~l~~~~~gG~~   87 (89)
T 1wy8_A           74 ------DIIQLLVRPDSGPS   87 (89)
T ss_dssp             ------CEEEEEECCCCSSC
T ss_pred             ------CEEEEEEeCCCCCC
Confidence                  48999999988754

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.78  E-value=4.6e-19  Score=119.86  Aligned_cols=77  Identities=19%  Similarity=0.305  Sum_probs=63.5

Q ss_pred             CCCceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCccccc--CCCC
Q 033465            3 SVQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSPL   78 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~--~i~~   78 (118)
                      .....|+|+||+.+|+  ++. +++++++||++||++|+++||    ++| ++++|||||+||+|+|+.+|++|  +|.+
T Consensus        19 ~~~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~----g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~   92 (99)
T 2kdb_A           19 FQGHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYP----SKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDE   92 (99)
T ss_dssp             ----CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHST----TCC-CTTTCCEEETTEEECTTSBTHHHHTTTCS
T ss_pred             CCCCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhc----CCC-ChhhEEEEECCEECCCCCCHHHHhcCCCC
Confidence            3456799999999998  567 888999999999999987653    344 25999999999999999999999  9997


Q ss_pred             CCCCCCeEEEEEE
Q 033465           79 CDIPGGVTTMHVV   91 (118)
Q Consensus        79 ~~~p~~~~tmhlv   91 (118)
                      +      .||||+
T Consensus        93 ~------~tihLv   99 (99)
T 2kdb_A           93 Y------HMVHLV   99 (99)
T ss_dssp             E------EEEEEC
T ss_pred             C------CEEEeC
Confidence            6      588875

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.78  E-value=4.1e-19  Score=117.59  Aligned_cols=75  Identities=17%  Similarity=0.446  Sum_probs=64.1

Q ss_pred             eEEEEEeCCCceeeeeecC--CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCC-CCCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCDIPGG   84 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i-~~~~~p~~   84 (118)
                      ++|+||+.+|+++. ++++  +++||++||++|++.    .+++|  +++|||||+||+|+|+.+|++|+| +++     
T Consensus         2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~-----   69 (87)
T 2lxa_A            2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN-----   69 (87)
T ss_dssp             CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHT----TSCSS--STTEEEEETTEECCTTCBHHHHCCCGGG-----
T ss_pred             EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHH----hcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC-----
Confidence            68999999999887 7755  999999999999433    35676  599999999999999999999999 555     


Q ss_pred             eEEEEEEeCCC
Q 033465           85 VTTMHVVVQPP   95 (118)
Q Consensus        85 ~~tmhlv~~~~   95 (118)
                       .++||+.+++
T Consensus        70 -stl~v~~~~~   79 (87)
T 2lxa_A           70 -STITVMIKPN   79 (87)
T ss_dssp             -CEEEEEECCC
T ss_pred             -CEEEEEcCCC
Confidence             5889888875

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.78  E-value=4.4e-19  Score=120.58  Aligned_cols=76  Identities=11%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      +++..|+|+|++.+|+++. +++++++||++||++|++     .+++|  +++|||||+||+|+|+.+|++|+|.++   
T Consensus        24 ~~~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~-----k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~g---   92 (100)
T 1uh6_A           24 GAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAA-----QTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDG---   92 (100)
T ss_dssp             SCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred             CCCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence            4556699999999999999 999999999999999964     46777  599999999999999999999999977   


Q ss_pred             CCeEEEEEEe
Q 033465           83 GGVTTMHVVV   92 (118)
Q Consensus        83 ~~~~tmhlv~   92 (118)
                         .|+||+-
T Consensus        93 ---stlhL~~   99 (100)
T 1uh6_A           93 ---MNLELYY   99 (100)
T ss_dssp             ---EEEEEEC
T ss_pred             ---CEEEEEe
Confidence               5888863

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=9.1e-19  Score=116.92  Aligned_cols=80  Identities=24%  Similarity=0.349  Sum_probs=70.0

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ....++|+|++.+|+++. +++++++||.+||++|.+.     .++|  +++|||||.||.|+|+.+|++|+|.++    
T Consensus        19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g----   86 (98)
T 4hcn_B           19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----   86 (98)
T ss_dssp             ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTT----
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence            345699999999999998 9999999999999999754     4566  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCCCc
Q 033465           84 GVTTMHVVVQPPST   97 (118)
Q Consensus        84 ~~~tmhlv~~~~~~   97 (118)
                        .++||+++..++
T Consensus        87 --~~i~l~~rl~GG   98 (98)
T 4hcn_B           87 --STLHLVLRLRGG   98 (98)
T ss_dssp             --EEEEEECBCSCC
T ss_pred             --CEEEEEEecCCC
Confidence              589999998875

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.77  E-value=1.2e-18  Score=114.54  Aligned_cols=78  Identities=24%  Similarity=0.364  Sum_probs=69.1

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ....++|+|++.+|+++. +++++++||.+||++|.+.     .++|  +++|||+|+|+.|+|+.+|++|||.+|+   
T Consensus        14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---   82 (91)
T 3v6c_B           14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES---   82 (91)
T ss_dssp             CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence            355699999999999998 9999999999999999654     5676  5999999999999999999999999874   


Q ss_pred             CeEEEEEEeCCC
Q 033465           84 GVTTMHVVVQPP   95 (118)
Q Consensus        84 ~~~tmhlv~~~~   95 (118)
                         ++|+++|.+
T Consensus        83 ---~i~l~~rlr   91 (91)
T 3v6c_B           83 ---TLHLVLRLR   91 (91)
T ss_dssp             ---EEEEECCCC
T ss_pred             ---EEEEEEecC
Confidence               889998864

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=111.13  Aligned_cols=80  Identities=24%  Similarity=0.384  Sum_probs=70.5

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ++++..++|+|++.+|+.+. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|||.+|  
T Consensus         2 ~~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g--   71 (81)
T 2dzi_A            2 SSGSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEK-----LNVP--VRQQRLLFKGKALADGKRLSDYSIGPN--   71 (81)
T ss_dssp             CCSSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred             CCCCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence            46778899999999999998 9999999999999999754     4566  599999999999999999999999987  


Q ss_pred             CCCeEEEEEEeCCC
Q 033465           82 PGGVTTMHVVVQPP   95 (118)
Q Consensus        82 p~~~~tmhlv~~~~   95 (118)
                          .++|++++++
T Consensus        72 ----~~i~l~~~~~   81 (81)
T 2dzi_A           72 ----SKLNLVVKPL   81 (81)
T ss_dssp             ----BCCEEECCCC
T ss_pred             ----CEEEEEEeCC
Confidence                3788888763

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.77  E-value=1.3e-18  Score=114.76  Aligned_cols=79  Identities=24%  Similarity=0.357  Sum_probs=68.6

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||.+||++|++.     .++|  +++|||+|.|+.|+|+.+|++|+|.++      .+
T Consensus         2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------~~   67 (96)
T 3k9o_B            2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   67 (96)
T ss_dssp             CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred             cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence            68999999999998 9999999999999999754     4666  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCchhh
Q 033465           88 MHVVVQPPSTEKA  100 (118)
Q Consensus        88 mhlv~~~~~~~~~  100 (118)
                      +||+++..++...
T Consensus        68 i~l~~r~~gG~~~   80 (96)
T 3k9o_B           68 LHLVLRLRGYADL   80 (96)
T ss_dssp             EEEEECCCC----
T ss_pred             EEEEEEcCCCCcc
Confidence            9999999998764

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.77  E-value=7.1e-19  Score=112.32  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+|++.+|+++. +++++++||.+||++|.++     +++|  +++|||+|+|+.|+|+.||++|+|.++      
T Consensus         2 ~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~-----~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~------   67 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEE------   67 (79)
T ss_dssp             CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTT------
T ss_pred             CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEeCCCCCHHHcCCCCC------
Confidence            3689999999999998 9999999999999999644     5676  589999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++|++++..|+
T Consensus        68 ~~i~l~~~~~GG   79 (79)
T 2uyz_B           68 DVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECCCC-
T ss_pred             CEEEEEEeccCC
Confidence            589999998875

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.77  E-value=2.3e-18  Score=111.00  Aligned_cols=82  Identities=22%  Similarity=0.276  Sum_probs=67.7

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ....++|+|++.+|+.+. +++++++||++||++|++.|.  .+++|  +++|||||+||.|+|+.+|++|+|.++    
T Consensus         2 ~~~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g----   72 (85)
T 2wyq_A            2 IPMAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK----   72 (85)
T ss_dssp             --CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT----
T ss_pred             CCceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC----
Confidence            356799999999999998 999999999999999976531  24566  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCCC
Q 033465           84 GVTTMHVVVQPPS   96 (118)
Q Consensus        84 ~~~tmhlv~~~~~   96 (118)
                        .++|++++.+.
T Consensus        73 --~~i~l~~~~~~   83 (85)
T 2wyq_A           73 --NFVVVMVTKTK   83 (85)
T ss_dssp             --SEEEEEEC---
T ss_pred             --CEEEEEEcCCC
Confidence              38888887654

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.77  E-value=9e-19  Score=114.75  Aligned_cols=79  Identities=24%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||+|+|+.|+|+.+|++|+|.+|      .
T Consensus         4 ~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~   69 (88)
T 2hj8_A            4 PLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S   69 (88)
T ss_dssp             EEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred             cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence            689999999999998 9999999999999999654     5676  599999999999999999999999987      4


Q ss_pred             EEEEEeCCCCchh
Q 033465           87 TMHVVVQPPSTEK   99 (118)
Q Consensus        87 tmhlv~~~~~~~~   99 (118)
                      ++||++++.++..
T Consensus        70 ~i~l~~~~~gg~~   82 (88)
T 2hj8_A           70 TVFMNLRLRGGLE   82 (88)
T ss_dssp             EEEEEEC------
T ss_pred             EEEEEEEcCCCcc
Confidence            8999999988764

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.77  E-value=2e-18  Score=116.56  Aligned_cols=79  Identities=18%  Similarity=0.444  Sum_probs=65.2

Q ss_pred             CCceeEEEEEeCCCceeeee--ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCC-CCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPK--SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCD   80 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~--~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i-~~~~   80 (118)
                      ..++++|+||+.+|+.+. +  ++++++||++||++|.+.    .+++|  +++|||||+||+|+|+.+|++|+| ++|+
T Consensus        16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~   88 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS   88 (98)
T ss_dssp             --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHT----TSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBC
T ss_pred             CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHH----hcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCC
Confidence            457799999999999776 6  566999999999999543    24566  599999999999999999999999 8773


Q ss_pred             CCCCeEEEEEEeCCC
Q 033465           81 IPGGVTTMHVVVQPP   95 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~   95 (118)
                            ++|++++.+
T Consensus        89 ------ti~lmvskp   97 (98)
T 4a20_A           89 ------TITVMIKPN   97 (98)
T ss_dssp             ------EEEEEECCC
T ss_pred             ------EEEEEEeCC
Confidence                  778887654

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.76  E-value=2.5e-18  Score=107.87  Aligned_cols=76  Identities=22%  Similarity=0.342  Sum_probs=66.7

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||+|.|+.|+|+.+|++|+|.++      .+
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~   66 (76)
T 1ndd_A            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV   66 (76)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred             CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence            57899999999998 9999999999999999754     4666  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++..++
T Consensus        67 i~l~~~~~GG   76 (76)
T 1ndd_A           67 LHLVLALRGG   76 (76)
T ss_dssp             EEEEECCC--
T ss_pred             EEEEEeCCCC
Confidence            9999998875

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.5e-18  Score=111.48  Aligned_cols=80  Identities=20%  Similarity=0.282  Sum_probs=67.8

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+|++.+|+++. +++++++||.+||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~------   67 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNH------   67 (85)
T ss_dssp             --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETBEECCTTCBTTTTTCCTT------
T ss_pred             CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCeECCCCCCHHHCCCCCC------
Confidence            4689999999999998 9999999999999999754     4566  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCchh
Q 033465           86 TTMHVVVQPPSTEK   99 (118)
Q Consensus        86 ~tmhlv~~~~~~~~   99 (118)
                      .++|++++..++..
T Consensus        68 ~~i~l~~rl~GG~g   81 (85)
T 3n3k_B           68 SALYLLLKLRGGGG   81 (85)
T ss_dssp             CEEEEEECCC----
T ss_pred             CEEEEEEeccCCCC
Confidence            48999999988753

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=2.4e-18  Score=114.64  Aligned_cols=79  Identities=18%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCDIPG   83 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~~p~   83 (118)
                      ...++|+||+.+| +++ +++++++||++||++|++.     +++|  +++|||||.||.|+|+ .+|++|+|+++    
T Consensus        13 ~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g----   79 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEF----   79 (94)
T ss_dssp             SCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT----
T ss_pred             CCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCC----
Confidence            4569999999888 888 9999999999999999654     5676  5999999999999999 99999999977    


Q ss_pred             CeEEEEEEeCCCCch
Q 033465           84 GVTTMHVVVQPPSTE   98 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~   98 (118)
                        .++||++++.++.
T Consensus        80 --stl~lv~r~~gg~   92 (94)
T 2kan_A           80 --SEIVVFLKSINRA   92 (94)
T ss_dssp             --EEEEEEECCCSSC
T ss_pred             --CEEEEEEeCCCCC
Confidence              5899999998874

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.76  E-value=1.2e-18  Score=116.43  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=70.5

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+|++.+|+++. +++++++||.+||++|.++     .++|  +++|||||.|+.|+|+.||++|+|.+++     
T Consensus        20 ~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~-----~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~-----   86 (97)
T 1wyw_B           20 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED-----   86 (97)
T ss_dssp             CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred             CcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence            4599999999999998 9999999999999999644     5777  5899999999999999999999999874     


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                       ++||+++..|+
T Consensus        87 -~I~l~~~~~GG   97 (97)
T 1wyw_B           87 -VIEVYQEQTGG   97 (97)
T ss_dssp             -EEEEEESSSCC
T ss_pred             -EEEEEEecCCC
Confidence             89999998875

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.5e-18  Score=113.54  Aligned_cols=75  Identities=16%  Similarity=0.288  Sum_probs=67.1

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee-cCCCCcccccCCCCCCCCCC
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-LENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~-L~D~~tL~~~~i~~~~~p~~   84 (118)
                      +-+.|++++.+|++++ +++++++||++||++|++.     .++|  +++|||||+||. |+|+.+|++|+|.+|.    
T Consensus         9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs----   76 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERS-----QHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTS----   76 (84)
T ss_dssp             CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred             CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence            4689999999999999 9999999999999999654     5676  599999999999 9999999999999873    


Q ss_pred             eEEEEEEeCC
Q 033465           85 VTTMHVVVQP   94 (118)
Q Consensus        85 ~~tmhlv~~~   94 (118)
                        ++||+++|
T Consensus        77 --~i~lv~~p   84 (84)
T 2kk8_A           77 --DIQLEVSS   84 (84)
T ss_dssp             --CEEEEECC
T ss_pred             --EEEEEEcC
Confidence              78888875

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.9e-18  Score=109.98  Aligned_cols=79  Identities=22%  Similarity=0.343  Sum_probs=70.1

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+|++.+|+++. +++++++||.+||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------   67 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKW------   67 (85)
T ss_dssp             -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT------
T ss_pred             CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCCHHHcCCCCC------
Confidence            4689999999999998 9999999999999999754     4566  599999999999999999999999977      


Q ss_pred             EEEEEEeCCCCch
Q 033465           86 TTMHVVVQPPSTE   98 (118)
Q Consensus        86 ~tmhlv~~~~~~~   98 (118)
                      .++|++++..++.
T Consensus        68 ~~l~l~~r~~GG~   80 (85)
T 3mtn_B           68 STLFLLLRLRGGG   80 (85)
T ss_dssp             CEEEEECCCCCC-
T ss_pred             CEEEEEEECcCCC
Confidence            4899999998874

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=4e-18  Score=108.39  Aligned_cols=75  Identities=21%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             eeEEEEEeCCCcee-eeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            7 QLEIKFRLTDGSDI-GPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         7 ~i~i~~~~~~g~~~-~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .++|+|++.+|+++ . ++ +++++||++||++|++.     .++|  +++|||+|+|+.|+|+.+|++|+|.+|     
T Consensus         2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~-----~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g-----   68 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQEL-----FHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLN-----   68 (78)
T ss_dssp             CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCTT-----
T ss_pred             cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence            47899999999986 7 99 99999999999999644     5676  599999999999999999999999987     


Q ss_pred             eEEEEEEeCCC
Q 033465           85 VTTMHVVVQPP   95 (118)
Q Consensus        85 ~~tmhlv~~~~   95 (118)
                       .++|++++++
T Consensus        69 -~~i~l~~r~~   78 (78)
T 2faz_A           69 -DTIQLLVRQS   78 (78)
T ss_dssp             -CEEEEEECCC
T ss_pred             -CEEEEEEeCC
Confidence             4889998864

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.75  E-value=6.1e-18  Score=106.06  Aligned_cols=76  Identities=25%  Similarity=0.377  Sum_probs=67.9

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|++++.+|+.+. +++++++||++||++|++.     .++|  +++|||+|.|+.|+|+.+|++|++.++      .+
T Consensus         1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~   66 (76)
T 3a9j_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRE------ST   66 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT------CE
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence            57899999999998 9999999999999999754     4566  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++..|+
T Consensus        67 i~l~~~~~GG   76 (76)
T 3a9j_A           67 LHLVLRLRGG   76 (76)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEeCCCC
Confidence            9999998875

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=1.1e-17  Score=110.70  Aligned_cols=81  Identities=20%  Similarity=0.326  Sum_probs=70.8

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD   80 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i~~~~   80 (118)
                      ++++..|+|+|++.+|+.+. +++++++||++||++|.+.     .     +++|||||.||.|+|+ .+|++|+|.++ 
T Consensus         2 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g-   69 (95)
T 1wia_A            2 SSGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPG-----Q-----ESQMKLIYQGRLLQDPARTLSSLNITNN-   69 (95)
T ss_dssp             CCCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSS-----T-----TTTCEEEETTEECCCSSCBTTTTTCCTT-
T ss_pred             CCCCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhh-----C-----cCcEEEEECCEEccCCcCCHHHcCCCCC-
Confidence            45677899999999999998 9999999999999999644     2     4899999999999999 99999999977 


Q ss_pred             CCCCeEEEEEEeCCCCchh
Q 033465           81 IPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~~~~~   99 (118)
                           .+|||+++.+....
T Consensus        70 -----~~i~l~~~~~~~~~   83 (95)
T 1wia_A           70 -----CVIHCHRSPPGAAV   83 (95)
T ss_dssp             -----EEEEEECCCCCCCC
T ss_pred             -----CEEEEEECCCCCCC
Confidence                 58999998766544

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.75  E-value=3.8e-18  Score=115.78  Aligned_cols=76  Identities=17%  Similarity=0.318  Sum_probs=65.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|+++. +++++++||.+||++|.+.     .++|  +++|||||+||.|+|+.+|++|||++|+      +
T Consensus         2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~   67 (106)
T 3m62_B            2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQS-----ISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q   67 (106)
T ss_dssp             -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHT-----TTSC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred             EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence            67999999999998 9999999999999999754     4566  5999999999999999999999999874      8


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +||+++...+
T Consensus        68 i~lv~~~~~~   77 (106)
T 3m62_B           68 VVFMVSQKKS   77 (106)
T ss_dssp             EEEECCC---
T ss_pred             EEEEEcCCCC
Confidence            8888876543

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=1.5e-18  Score=118.72  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=70.0

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCC-------------CCceEEEeCCeecC-C
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT-------------VKDVKLISAGKILE-N   67 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~-------------~~~~rLI~~Gk~L~-D   67 (118)
                      +|+...++|+|++.+|++++ ++|++++||++||++|.+..     ++|..             .++|||||+||.|+ |
T Consensus         2 ~~~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~-----~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD   75 (105)
T 1v2y_A            2 SSGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYV-----QLKQEREGGVQHISWSYVWRTYHLTSAGEKLTED   75 (105)
T ss_dssp             CCCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHH-----HHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCS
T ss_pred             CCCCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHh-----CCCcccccCcceeeeeecceeEEEEeCCcCccCC
Confidence            35566799999999999999 99999999999999997652     23210             15789999999995 6


Q ss_pred             CCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465           68 NRTLGECRSPLCDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        68 ~~tL~~~~i~~~~~p~~~~tmhlv~~~~~~   97 (118)
                      +++|++|||.++      .++|+++++.+.
T Consensus        76 ~~tL~dygI~~g------~~l~lv~~lr~~   99 (105)
T 1v2y_A           76 RKKLRDYGIRNR------DEVSFIKKLGQK   99 (105)
T ss_dssp             SSBHHHHTCCSS------EEEEEEECSCSC
T ss_pred             cCCHHHcCCCCC------CEEEEEehhccC
Confidence            799999999987      589999998764

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=5e-18  Score=114.24  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             CCCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         1 ~~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |...+..++|+|++.+|+ +. +++++++||.+||++|++.     .++|  +++|||||.||.|+|+.+|++|+|.++ 
T Consensus        16 ~~~~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~g-   85 (100)
T 1yqb_A           16 PRGSPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG-   85 (100)
T ss_dssp             CSCCTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBHHHHTCCTT-
T ss_pred             CCCCCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHCCCCCC-
Confidence            456778899999999986 66 9999999999999999654     5676  599999999999999999999999987 


Q ss_pred             CCCCeEEEEEEeCCCCch
Q 033465           81 IPGGVTTMHVVVQPPSTE   98 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~~~~   98 (118)
                           .++||+++..+++
T Consensus        86 -----stI~l~~r~~~~p   98 (100)
T 1yqb_A           86 -----LTVHLVIKRQHRA   98 (100)
T ss_dssp             -----CEEEEEECCCCSC
T ss_pred             -----CEEEEEEcCCCCC
Confidence                 4889999887754

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=5.8e-18  Score=111.01  Aligned_cols=78  Identities=24%  Similarity=0.369  Sum_probs=65.0

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .++|.+++.+|+++. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      .
T Consensus         9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~   74 (88)
T 1sif_A            9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S   74 (88)
T ss_dssp             -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBSGGGTCCTT------C
T ss_pred             ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCcHHHcCCCCC------C
Confidence            478999999999999 9999999999999999654     5676  599999999999999999999999987      4


Q ss_pred             EEEEEeCCCCch
Q 033465           87 TMHVVVQPPSTE   98 (118)
Q Consensus        87 tmhlv~~~~~~~   98 (118)
                      ++|+++++.++.
T Consensus        75 ~i~l~~r~~GG~   86 (88)
T 1sif_A           75 TLHLVLRLRGGG   86 (88)
T ss_dssp             EEEEEC------
T ss_pred             EEEEEEeCCCCC
Confidence            899999998863

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1e-17  Score=117.15  Aligned_cols=84  Identities=20%  Similarity=0.268  Sum_probs=68.4

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      +.+...++|+|++. |+++. +++++++||.+||++|.+.     .++|  +++|||||.||.|+|+.+|++|+|.++  
T Consensus        27 ~~~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g--   95 (125)
T 1j8c_A           27 PAEPKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDG--   95 (125)
T ss_dssp             CCCCCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSS--
T ss_pred             cCCCCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHH-----HCcC--cceEEEEECCEEcCCCCCHHHcCCCCC--
Confidence            34556799999998 99998 9999999999999999654     4676  599999999999999999999999976  


Q ss_pred             CCCeEEEEEEeCCCCchhh
Q 033465           82 PGGVTTMHVVVQPPSTEKA  100 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~~~  100 (118)
                          .+|||+++..++...
T Consensus        96 ----stI~lv~~~~gg~~~  110 (125)
T 1j8c_A           96 ----LTVHLVIKRDPNSSS  110 (125)
T ss_dssp             ----EEEEEEEC-------
T ss_pred             ----CEEEEEeccCCCCCC
Confidence                589999999887654

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=3.5e-18  Score=116.13  Aligned_cols=75  Identities=13%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             EEEEEeCC----CceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            9 EIKFRLTD----GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         9 ~i~~~~~~----g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .|.|+..+    |+.+. +++++++||++||++|++.     +++|  +++|||||+||+|+|+.||++|+|+++     
T Consensus        17 ti~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~k-----~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~g-----   83 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAET-----FGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN-----   83 (100)
T ss_dssp             EEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHH-----TTCC--STTCEEEETTEECCTTSBHHHHTCCSS-----
T ss_pred             EEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHHH-----HCcC--HHHeEEEeCCeECCCCCcHHHcCCCCC-----
Confidence            34445555    77888 9999999999999999644     5677  599999999999999999999999987     


Q ss_pred             eEEEEEEeCCCCch
Q 033465           85 VTTMHVVVQPPSTE   98 (118)
Q Consensus        85 ~~tmhlv~~~~~~~   98 (118)
                       .++ +++++.+..
T Consensus        84 -sti-~vl~lrg~~   95 (100)
T 1wju_A           84 -VKA-MVLELKQSS   95 (100)
T ss_dssp             -EEE-EEECCCCCC
T ss_pred             -CEE-EEEEECCCC
Confidence             455 556655543

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=118.70  Aligned_cols=82  Identities=21%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CCceeEEEEE-eCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            4 VQDQLEIKFR-LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         4 ~~~~i~i~~~-~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      .++++.++|+ ..+|..++ ++|+++.||++||++++..     .++|  +++|||||+||+|+|++||++|||++|.  
T Consensus        12 ~~~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~-----~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~--   81 (118)
T 2daf_A           12 EDSLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHL-----LGIP--HSVLQIRYSGKILKNNETLVQHGVKPQE--   81 (118)
T ss_dssp             CSSCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHH-----HTCC--TTTEEEEETTEEECSSCCHHHHSCCSSC--
T ss_pred             cCccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhh-----hCCC--hHHEEEEECCeEcCCcchHHHcCCCCCC--
Confidence            4567888988 45677888 9999999999999999754     4577  5999999999999999999999999874  


Q ss_pred             CCeEEEEEEeCCCCchh
Q 033465           83 GGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        83 ~~~~tmhlv~~~~~~~~   99 (118)
                          |+||+++...|..
T Consensus        82 ----TIhLvi~s~~p~~   94 (118)
T 2daf_A           82 ----IVQVEIFSTNPDL   94 (118)
T ss_dssp             ----EEEEEEEESCTTT
T ss_pred             ----EEEEEEecCCCcc
Confidence                9999999987765

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1.4e-17  Score=110.53  Aligned_cols=79  Identities=27%  Similarity=0.360  Sum_probs=67.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+.+. +++++++||++||++|++.+.  .+++|  +++|||||+||.|+|+.+|++|||.+|+      +
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~   69 (95)
T 1uel_A            1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKN------F   69 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCC------E
Confidence            57899999999998 999999999999999976531  14666  5999999999999999999999999873      7


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++.+.+
T Consensus        70 i~l~~~~~~~   79 (95)
T 1uel_A           70 VVVMVTKPKA   79 (95)
T ss_dssp             EEEEESSCCC
T ss_pred             EEEEEeCCCC
Confidence            8888875443

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.73  E-value=1.2e-17  Score=114.10  Aligned_cols=78  Identities=24%  Similarity=0.350  Sum_probs=69.9

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+|++.+|+++. +++++++||.+||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      
T Consensus        34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------   99 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------   99 (111)
T ss_dssp             GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTT------
T ss_pred             ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence            4699999999999998 9999999999999999754     4666  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++||+++.+++
T Consensus       100 s~I~l~~rl~GG  111 (111)
T 3vdz_A          100 STLHLVLRLRGG  111 (111)
T ss_dssp             CEEEEEECCCC-
T ss_pred             CEEEEEEecCCC
Confidence            489999998875

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=4.7e-18  Score=112.54  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      .+..++|+|++. |+++. +++++++||.+||++|++.     .++|  +++|||||.||.|+|+.+|++|+|.++    
T Consensus        14 ~~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g----   80 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG----   80 (96)
T ss_dssp             CSCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT----
T ss_pred             CCCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC----
Confidence            456799999998 99998 9999999999999999754     4666  599999999999999999999999977    


Q ss_pred             CeEEEEEEeCCCCch
Q 033465           84 GVTTMHVVVQPPSTE   98 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~   98 (118)
                        .++||+++..++.
T Consensus        81 --~~i~l~~~~~~g~   93 (96)
T 1wx8_A           81 --STVHVVVRSHSGP   93 (96)
T ss_dssp             --EEEECCBCCSSCS
T ss_pred             --CEEEEEEeCCCCC
Confidence              5899999988764

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.73  E-value=2e-17  Score=104.41  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=65.0

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+|++ +|+.+. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|||.+|      
T Consensus         3 M~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------   67 (77)
T 2bwf_A            3 MSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG------   67 (77)
T ss_dssp             EEEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred             eEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHH-----hCCC--HHHEEEEECCeEcCCCCCHHHcCCCCC------
Confidence            348899999 999998 9999999999999999654     4666  599999999999999999999999987      


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                      .++|++.++
T Consensus        68 ~~i~l~~~~   76 (77)
T 2bwf_A           68 HSVHLVKSQ   76 (77)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEcC
Confidence            378888765

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.72  E-value=9.8e-18  Score=111.15  Aligned_cols=76  Identities=25%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+|++  |+++. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      
T Consensus        18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~g------   81 (93)
T 2l7r_A           18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASL-----EGIA--PEDQVVLLAGAPLEDEATLGQCGVEAL------   81 (93)
T ss_dssp             --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHH-----HTCC--GGGCEEEETTEECCTTSBHHHHTCCSS------
T ss_pred             CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhHEEEEECCEECCCCCcHHHCCCCCC------
Confidence            348888888  88998 9999999999999999644     5676  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++||++++.++
T Consensus        82 stI~lv~rl~GG   93 (93)
T 2l7r_A           82 TTLEVAGRMLGG   93 (93)
T ss_dssp             CEEEEECCCCCC
T ss_pred             CEEEEEEecCCC
Confidence            489999999875

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.72  E-value=2.6e-17  Score=117.31  Aligned_cols=80  Identities=24%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      ...++|++++.+|+++. +++++++||++||++|.+.     +++|  +++|||+|+|+.|+|+.+|++|+|+++     
T Consensus        79 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g-----  145 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL-----  145 (159)
T ss_dssp             CCCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred             CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCCC--HHHEEEEECCeecCCCCCHHHcCCCCC-----
Confidence            45688999999999998 9999999999999999644     5677  599999999999999999999999987     


Q ss_pred             eEEEEEEeCCCCch
Q 033465           85 VTTMHVVVQPPSTE   98 (118)
Q Consensus        85 ~~tmhlv~~~~~~~   98 (118)
                       .++||++++.++-
T Consensus       146 -~~l~l~~rl~GG~  158 (159)
T 3rt3_B          146 -STVFMNLRLRGGG  158 (159)
T ss_dssp             -CEEEEEECCC---
T ss_pred             -CEEEEEEecCCCC
Confidence             4899999999873

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.71  E-value=4.2e-17  Score=108.40  Aligned_cols=78  Identities=24%  Similarity=0.372  Sum_probs=68.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      .+
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~   66 (98)
T 1yx5_B            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (98)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----TCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------CE
Confidence            57899999999998 9999999999999999754     4666  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCchh
Q 033465           88 MHVVVQPPSTEK   99 (118)
Q Consensus        88 mhlv~~~~~~~~   99 (118)
                      +|++++..++..
T Consensus        67 i~l~~~~~gG~~   78 (98)
T 1yx5_B           67 LHLVLRLRGGRD   78 (98)
T ss_dssp             EEEEECCCCC--
T ss_pred             EEEEEeCCCCCc
Confidence            999999987755

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.71  E-value=2e-17  Score=112.75  Aligned_cols=82  Identities=17%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             CCceeEEEEEeC---CCceeeeeecCC-cccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            4 VQDQLEIKFRLT---DGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         4 ~~~~i~i~~~~~---~g~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      ....|+|+|++.   +|+.+. +++++ ++||.+||++|++.     .++|  +++|||+|.|++|+|+.+|++|+|.++
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g   95 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG   95 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS
T ss_pred             CCCcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCC
Confidence            345799999998   899998 99998 99999999999644     5677  599999999999999999999999987


Q ss_pred             CCCCCeEEEEEEeCCCCchh
Q 033465           80 DIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        80 ~~p~~~~tmhlv~~~~~~~~   99 (118)
                            .++||+++..++.+
T Consensus        96 ------~~l~l~~r~~GGk~  109 (111)
T 1we6_A           96 ------EILTLSLRERSGPS  109 (111)
T ss_dssp             ------CEEEEECSSCCSSC
T ss_pred             ------CEEEEEEEcCCCCC
Confidence                  48999999998853

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.6e-17  Score=111.41  Aligned_cols=78  Identities=18%  Similarity=0.303  Sum_probs=68.9

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+|++.+|+++. +++++++||++||++|.+.     .++|  +++|||+|+||.|+|+.+|++|||.+|      
T Consensus        22 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------   87 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------   87 (106)
T ss_dssp             CSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence            4599999999999998 9999999999999999644     5676  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++||+++...+
T Consensus        88 ~ti~lv~~~~~~   99 (106)
T 1ttn_A           88 YVVQVIVSQPVQ   99 (106)
T ss_dssp             CEEEEECCCSSC
T ss_pred             CEEEEEEeCCCC
Confidence            488999886644

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.71  E-value=3.4e-17  Score=110.23  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      +...++|+|++. |+.+. +++++++||++||++|++.     .++|  +++|||||.||.|+|+.+|++|||.+|    
T Consensus        22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g----   88 (101)
T 2klc_A           22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKR-----FKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG----   88 (101)
T ss_dssp             -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHH-----HTCC--GGGEEEEETTEEECTTCCTGGGTCCTT----
T ss_pred             CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence            456799999998 88898 9999999999999999654     5676  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCCC
Q 033465           84 GVTTMHVVVQPPS   96 (118)
Q Consensus        84 ~~~tmhlv~~~~~   96 (118)
                        .++||++++++
T Consensus        89 --~~I~l~~~~~~   99 (101)
T 2klc_A           89 --LTVHLVIKTQN   99 (101)
T ss_dssp             --CEEEEEECCSS
T ss_pred             --CEEEEEEcCCC
Confidence              37888888765

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.8e-17  Score=111.07  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=70.9

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      +...|+|+|+..+|+ +. +++++++||.+||++|++.     .++|  +++|||||.||.|+|+.+|++|+|.++    
T Consensus        14 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g----   80 (106)
T 1wx7_A           14 DPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG----   80 (106)
T ss_dssp             CSSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTT----
T ss_pred             CCceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence            356699999999886 66 9999999999999999754     4666  599999999999999999999999976    


Q ss_pred             CeEEEEEEeCCCCchhh
Q 033465           84 GVTTMHVVVQPPSTEKA  100 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~~~  100 (118)
                        .+|||+++..++...
T Consensus        81 --~~i~l~~~~~~~~~~   95 (106)
T 1wx7_A           81 --LTVHLVIKRQHRAMG   95 (106)
T ss_dssp             --EEEEEEECCCCCSCC
T ss_pred             --CEEEEEEcCCCCCCC
Confidence              589999998877553

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.71  E-value=3.7e-17  Score=119.37  Aligned_cols=79  Identities=24%  Similarity=0.358  Sum_probs=69.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|+++. +++++++||.+||++|++.     .++|  +++|||||+||.|+|+.+|++|+|+++      .+
T Consensus         1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------st   66 (169)
T 3l0w_B            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (169)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CE
Confidence            57899999999999 9999999999999999654     5676  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCchhh
Q 033465           88 MHVVVQPPSTEKA  100 (118)
Q Consensus        88 mhlv~~~~~~~~~  100 (118)
                      +||+++..++...
T Consensus        67 I~Lvlrl~GG~k~   79 (169)
T 3l0w_B           67 LHLVLRLRGGGGE   79 (169)
T ss_dssp             EEEEECCCC---C
T ss_pred             EEEEEEecccccc
Confidence            9999999998775

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.71  E-value=2e-17  Score=115.33  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=63.0

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCCe
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGV   85 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~~   85 (118)
                      +|+|+++... .++. +++++++||++||++|.     +.+++|  +++|||||+||.|+|++||++|||.+..+ +...
T Consensus         2 ~mfl~ir~~k-tti~-lev~~sdTV~~lK~kI~-----~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~   72 (118)
T 2fnj_B            2 DVFLMIRRHK-TTIF-TDAKESSTVFELKRIVE-----GILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP   72 (118)
T ss_dssp             EEEEEEEEBT-EEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred             cEEEEEecCC-EEEE-EEeCCcChHHHHHHHHH-----HHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence            4667776532 3576 99999999999999995     457887  59999999999999999999999994100 1112


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .|+||++| .++
T Consensus        73 stL~L~lr-~~g   83 (118)
T 2fnj_B           73 ATVGLAFR-ADD   83 (118)
T ss_dssp             EEEEEEEB-SSS
T ss_pred             CEEEEEec-CCC
Confidence            79999999 444

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.71  E-value=2e-17  Score=115.36  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             eeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCC
Q 033465            7 QLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGG   84 (118)
Q Consensus         7 ~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~   84 (118)
                      +|+|+++.  ++ ++. +++++++||.+||++|.     +.+++|  +++|||||+||+|+|++||++|||..+.. +..
T Consensus         2 ~vFl~Ikr--~ktTI~-ldve~sdTV~~lK~kI~-----~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~   71 (118)
T 4ajy_B            2 DVFLMIRR--HKTTIF-TDAKESSTVFELKRIVE-----GILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQA   71 (118)
T ss_dssp             EEEEEEEE--BTEEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTB
T ss_pred             ceEEEEec--CCEEEE-EEcCCCChHHHHHHHHH-----HHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCC
Confidence            45566655  44 666 89999999999999995     457787  59999999999999999999999997222 333


Q ss_pred             eEEEEEEeCCC
Q 033465           85 VTTMHVVVQPP   95 (118)
Q Consensus        85 ~~tmhlv~~~~   95 (118)
                      ..|+||++|..
T Consensus        72 ~atl~Lvlr~~   82 (118)
T 4ajy_B           72 PATVGLAFRAD   82 (118)
T ss_dssp             CEEEEEEECCS
T ss_pred             CCEEEEEEecC
Confidence            47999999974

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.70  E-value=1.9e-17  Score=113.59  Aligned_cols=83  Identities=16%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             CCceeEEEEEeC----------CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccc
Q 033465            4 VQDQLEIKFRLT----------DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGE   73 (118)
Q Consensus         4 ~~~~i~i~~~~~----------~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~   73 (118)
                      ....|.|.|+..          +|+++. +++++++||.+||++|.+.     .++|  +++|||||.|+.|+|+.+|++
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~   93 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAY   93 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHH
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHH
Confidence            445788888886          477888 9999999999999999654     5676  599999999999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEEeCCCCchhh
Q 033465           74 CRSPLCDIPGGVTTMHVVVQPPSTEKA  100 (118)
Q Consensus        74 ~~i~~~~~p~~~~tmhlv~~~~~~~~~  100 (118)
                      |+|.++      .++||+++..++.++
T Consensus        94 y~i~~g------~~i~lv~rl~GGk~~  114 (115)
T 1we7_A           94 YNMASG------AVIHLALKERSGPSS  114 (115)
T ss_dssp             HTCCSS------CEEEEEECCCSCCSC
T ss_pred             CCCCCC------CEEEEEEEcCCCCCC
Confidence            999977      489999999998654

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.70  E-value=8.8e-17  Score=109.62  Aligned_cols=78  Identities=24%  Similarity=0.350  Sum_probs=69.5

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+|++.+|+.+. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.++      
T Consensus        34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g------   99 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------   99 (111)
T ss_dssp             SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTT------
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence            4699999999999998 9999999999999999754     4566  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++||+++..++
T Consensus       100 s~I~l~~rl~GG  111 (111)
T 2ojr_A          100 STLHLVLRLRGG  111 (111)
T ss_dssp             CEEEEEECCCC-
T ss_pred             CEEEEEEeCCCC
Confidence            489999998875

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.53  E-value=1.2e-18  Score=110.26  Aligned_cols=75  Identities=25%  Similarity=0.384  Sum_probs=66.3

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+++. +++++++||++||++|++     ..++|  +++|||+|+|+.|+|+.+|++|+|.+|      .+
T Consensus         1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~~   66 (76)
T 3b1l_X            1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAK-----QQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------SI   66 (76)
Confidence            46888999999998 999999999999999964     45676  599999999999999999999999977      48


Q ss_pred             EEEEeCCCC
Q 033465           88 MHVVVQPPS   96 (118)
Q Consensus        88 mhlv~~~~~   96 (118)
                      +|+++++++
T Consensus        67 i~l~~rlrg   75 (76)
T 3b1l_X           67 VHIVQRPRR   75 (76)
Confidence            899998765

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=6.3e-17  Score=108.86  Aligned_cols=84  Identities=7%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             CCCCceeEEEEEeCCC----ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCC-CcccccCC
Q 033465            2 ASVQDQLEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRS   76 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g----~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~-~tL~~~~i   76 (118)
                      +++.+.++|+|++.+|    +.+. +++++++||++||++|++.     .++|  +++|||||.||.|+|+ .+|++|+|
T Consensus         2 ~~~~~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI   73 (102)
T 1v5o_A            2 SSGSSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGL   73 (102)
T ss_dssp             CCCSCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTC
T ss_pred             CCCCCeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCC
Confidence            3556679999998754    6888 9999999999999999644     5676  5999999999999887 69999999


Q ss_pred             CCCCCCCCeEEEEEEeCCCCchh
Q 033465           77 PLCDIPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        77 ~~~~~p~~~~tmhlv~~~~~~~~   99 (118)
                      .++      .++||+.+..++..
T Consensus        74 ~~g------~~l~l~~~~~gg~~   90 (102)
T 1v5o_A           74 KDG------DMVVLLQKDNVGLR   90 (102)
T ss_dssp             CTT------EEEEECBCCCCCCS
T ss_pred             CCC------CEEEEEECCCCCCC
Confidence            987      58999998877744

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.6e-17  Score=111.00  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      ...|+|+|++ +|+.+. +++++++||++||++|++.     .++|  +++|||||+||.|+|+.+|++|||++|     
T Consensus        26 ~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g-----   91 (101)
T 3m63_B           26 AMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG-----   91 (101)
T ss_dssp             ---CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTT-----
T ss_pred             CcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCC-----
Confidence            3568888987 899998 9999999999999999654     4676  599999999999999999999999987     


Q ss_pred             eEEEEEEeCC
Q 033465           85 VTTMHVVVQP   94 (118)
Q Consensus        85 ~~tmhlv~~~   94 (118)
                       .++||+.+.
T Consensus        92 -~tI~lv~~~  100 (101)
T 3m63_B           92 -HSVHLVKSQ  100 (101)
T ss_dssp             -EEEEECCCC
T ss_pred             -CEEEEEeCC
Confidence             588988764

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.69  E-value=9.3e-17  Score=110.38  Aligned_cols=78  Identities=24%  Similarity=0.363  Sum_probs=70.0

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      ..+|++++.+|+++. +++++++||++||++|++.     .++|  +++|||+|+||.|+|+.+|++|+|.++      .
T Consensus         9 ~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------s   74 (114)
T 2kdi_A            9 EFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRE------S   74 (114)
T ss_dssp             CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTTTTTCCSS------C
T ss_pred             cEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence            468899999999999 9999999999999999654     5676  599999999999999999999999987      4


Q ss_pred             EEEEEeCCCCch
Q 033465           87 TMHVVVQPPSTE   98 (118)
Q Consensus        87 tmhlv~~~~~~~   98 (118)
                      ++||++++.++.
T Consensus        75 tI~l~~~~~GG~   86 (114)
T 2kdi_A           75 TLHLVLRLRGGS   86 (114)
T ss_dssp             EEEEEECCCSSC
T ss_pred             EEEEEEEcCCCc
Confidence            899999998874

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=1.9e-16  Score=107.40  Aligned_cols=80  Identities=23%  Similarity=0.308  Sum_probs=66.0

Q ss_pred             ceeEEEEEeCCC---ceeeeeecCC---------cccHHHHHHHhhhhCCCcccCCCCCCCc-eEEEeCCeecCCCCccc
Q 033465            6 DQLEIKFRLTDG---SDIGPKSFPA---------ATSVATLKESVLSQWPKEKENGPRTVKD-VKLISAGKILENNRTLG   72 (118)
Q Consensus         6 ~~i~i~~~~~~g---~~~~~~~v~~---------~~TV~~lK~~I~~~wp~~~~~~p~~~~~-~rLI~~Gk~L~D~~tL~   72 (118)
                      +.++|+||+.+|   ..+. ++|++         ++||.+||++|.+..|   +++|  +++ |||||.||.|+|+.+|+
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~   84 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD   84 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred             CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence            348899999988   7887 88554         5999999999976532   1566  588 99999999999999999


Q ss_pred             ccCCCCCCCCCCeEEEEEEeCCCCc
Q 033465           73 ECRSPLCDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        73 ~~~i~~~~~p~~~~tmhlv~~~~~~   97 (118)
                      +|+|+++      .++||+++..+.
T Consensus        85 ~y~i~~g------~~i~lv~~~~~~  103 (107)
T 1x1m_A           85 FYGIQPG------STVHVLRKSWSG  103 (107)
T ss_dssp             HHTCCTT------CEEEEEESSCCS
T ss_pred             HcCCCCC------CEEEEEeCCCCC
Confidence            9999987      378999887654

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.66  E-value=2.7e-16  Score=113.73  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=70.6

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ....++|+|++.+|+++. +++++++||.+||++|.+.     .++|  +++|||+|+|+.|+|+.+|++|+|.++    
T Consensus        17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~----   84 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----   84 (172)
T ss_dssp             --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT----
T ss_pred             CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCccccccCCHhHcCCccc----
Confidence            345699999999999998 9999999999999999644     5676  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCCCch
Q 033465           84 GVTTMHVVVQPPSTE   98 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~   98 (118)
                        .++||+++..++.
T Consensus        85 --~~l~l~~~~~gg~   97 (172)
T 3u30_A           85 --STLHLVLRLRGGM   97 (172)
T ss_dssp             --CEEEEEECCCCCE
T ss_pred             --ceeeeeecccccc
Confidence              4889998887763

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=3.1e-16  Score=103.07  Aligned_cols=81  Identities=17%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCc-----ccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCC-CCcccccC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAA-----TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN-NRTLGECR   75 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~-----~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D-~~tL~~~~   75 (118)
                      ++.++.|+|+|++ .|..+. ++++++     +||.+||++|++.     .++|  +++|||||.||.|+| +.+|++|+
T Consensus         2 ~~~~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~   72 (92)
T 1wxv_A            2 SSGSSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALG   72 (92)
T ss_dssp             CCCCSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHT
T ss_pred             CCCCCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCC
Confidence            4567789999998 588888 999995     9999999999644     5676  599999999999998 55899999


Q ss_pred             CCCCCCCCCeEEEEEEeCCCCc
Q 033465           76 SPLCDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        76 i~~~~~p~~~~tmhlv~~~~~~   97 (118)
                      |.++      .++||+.++..+
T Consensus        73 i~~g------~~i~l~~~~~~~   88 (92)
T 1wxv_A           73 IQDG------CRVMLIGKKNSG   88 (92)
T ss_dssp             CCSS------EEEEEESCCSCS
T ss_pred             CCCC------CEEEEEecCCCC
Confidence            9976      588988876544

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.66  E-value=1.5e-16  Score=118.61  Aligned_cols=79  Identities=24%  Similarity=0.332  Sum_probs=71.0

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .++|+|++.+|+++. +++++++||.+||++|.+.     .++|  +++|||||+|+.|+|+.+|++|+|+++      .
T Consensus       105 eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~-----~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~g------s  170 (189)
T 3q3f_A          105 GGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S  170 (189)
T ss_dssp             CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTCBGGGGTCCTT------C
T ss_pred             ceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhc-----cCCC--HHHEEEEECCEECCCCCCHHHCCCCCC------C
Confidence            489999999999998 9999999999999999644     5676  599999999999999999999999987      4


Q ss_pred             EEEEEeCCCCchh
Q 033465           87 TMHVVVQPPSTEK   99 (118)
Q Consensus        87 tmhlv~~~~~~~~   99 (118)
                      ++||++++.++..
T Consensus       171 tI~LvlrlrGG~~  183 (189)
T 3q3f_A          171 TLHLVLRLRGGGQ  183 (189)
T ss_dssp             EEEECCCCCCCCC
T ss_pred             EEEEEEEcCCCCc
Confidence            8999999988743

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=1.5e-16  Score=106.36  Aligned_cols=78  Identities=10%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             CCCCceeEEEEEeCCCcee-eeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDI-GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~-~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      +|+++.|+|+|+. .|+.+ . +++++++||.+||++|++.     .++|  +++|||||.||.|+|+ +|++|+|.+++
T Consensus         2 ~~~~~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~   71 (96)
T 1wgg_A            2 SSGSSGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM   71 (96)
T ss_dssp             CSCCCEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC
T ss_pred             CCCCcEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCC
Confidence            5677889999996 68888 7 9999999999999999644     5777  5999999999999999 99999999873


Q ss_pred             CCCCeEEEEEEeCCC
Q 033465           81 IPGGVTTMHVVVQPP   95 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~   95 (118)
                            ++||+..+.
T Consensus        72 ------~i~l~~~~~   80 (96)
T 1wgg_A           72 ------TVLMMGSAD   80 (96)
T ss_dssp             ------EEECCCCCC
T ss_pred             ------EEEEEecch
Confidence                  778776654

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.65  E-value=3e-16  Score=103.37  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=67.9

Q ss_pred             CCCCceeEEEEEeCCCceeeee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSP   77 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~   77 (118)
                      +++++.++|+|+. .|+++. + ++++++||.+||++|++.     .++|  +++||||   |.|+.|+|+.+|++|+|.
T Consensus         2 ~~~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~   72 (90)
T 1v5t_A            2 SSGSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLK   72 (90)
T ss_dssp             CCCCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCC
T ss_pred             CCCCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCC
Confidence            4567789999997 788998 9 999999999999999644     6677  5999999   999999999999999999


Q ss_pred             CCCCCCCeEEEEEEeCCC
Q 033465           78 LCDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        78 ~~~~p~~~~tmhlv~~~~   95 (118)
                      ++      .++||+..+.
T Consensus        73 ~g------~~l~l~~~~~   84 (90)
T 1v5t_A           73 PN------TKIMMMGTRE   84 (90)
T ss_dssp             TT------EEEEEECCCS
T ss_pred             CC------CEEEEEecCc
Confidence            77      4788876553

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.65  E-value=8.4e-18  Score=117.39  Aligned_cols=78  Identities=26%  Similarity=0.358  Sum_probs=1.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|.++. +++++++||++||++|.+     ..++|  +++|||+|.|+.|+|+.+|++|+|.+|      .+
T Consensus         1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------st   66 (128)
T 3u5e_m            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHH-----HhCcC--hHHEEEEECCEECCCCCchhhhccCCC------CE
Confidence            47889999999998 999999999999999954     45676  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCchh
Q 033465           88 MHVVVQPPSTEK   99 (118)
Q Consensus        88 mhlv~~~~~~~~   99 (118)
                      +||+++..++..
T Consensus        67 i~l~~rl~GG~~   78 (128)
T 3u5e_m           67 LHLVLRLRGGII   78 (128)
T ss_dssp             ----------CC
T ss_pred             EEEEEEcCCCCC
Confidence            999999998864

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.64  E-value=1.7e-17  Score=119.92  Aligned_cols=79  Identities=27%  Similarity=0.382  Sum_probs=0.0

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |+|+|++.+|.++. +++++++||++||++|++     ..++|  +++|||||+|+.|+|+.+|++|+|.++      .+
T Consensus         1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------st   66 (152)
T 3u5c_f            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHH-----HhCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CE
Confidence            57889999999998 999999999999999954     45676  599999999999999999999999977      48


Q ss_pred             EEEEeCCCCchhh
Q 033465           88 MHVVVQPPSTEKA  100 (118)
Q Consensus        88 mhlv~~~~~~~~~  100 (118)
                      +||++++.++.++
T Consensus        67 L~Lvlrl~GGgKk   79 (152)
T 3u5c_f           67 LHLVLRLRGGGKK   79 (152)
T ss_dssp             -------------
T ss_pred             EEEEeeccCCCcC
Confidence            9999999999654

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.64  E-value=3.6e-16  Score=113.09  Aligned_cols=78  Identities=24%  Similarity=0.364  Sum_probs=65.7

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..+.|.|++.+|+++. +++++++||.+||++|...     +++|  +++|||||.|+.|+|+.+|++|+|+++      
T Consensus        95 gg~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------  160 (172)
T 3u30_A           95 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------  160 (172)
T ss_dssp             CCEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------
T ss_pred             ccccceeecccCccee-EEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------
Confidence            4577888999999998 9999999999999999654     5677  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++||++++.++
T Consensus       161 ~tl~l~~rlrgG  172 (172)
T 3u30_A          161 STLHLVLRLRGG  172 (172)
T ss_dssp             CEEEECC-----
T ss_pred             CEEEEEEecCCC
Confidence            489999998875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.64  E-value=9.7e-16  Score=107.26  Aligned_cols=78  Identities=24%  Similarity=0.364  Sum_probs=68.9

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..+.|++++.+|+++. +++++++||++||++|.+.     .++|  +++|||+|.|+.|+|+.+|++|+|.++      
T Consensus        75 ~~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------  140 (152)
T 3b08_A           75 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------  140 (152)
T ss_dssp             TCEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred             cccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------
Confidence            3478889999999998 9999999999999999754     4676  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .++|++++..|+
T Consensus       141 ~~i~l~~r~~GG  152 (152)
T 3b08_A          141 STLHLVLRLRGG  152 (152)
T ss_dssp             CEEEEEECCCC-
T ss_pred             CEEEEEEecCCC
Confidence            489999999875

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.64  E-value=7.4e-16  Score=105.47  Aligned_cols=75  Identities=13%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             eeEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCC-CCCCCC
Q 033465            7 QLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSP-LCDIPG   83 (118)
Q Consensus         7 ~i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~-~~~~p~   83 (118)
                      .++++|+...+  ..++ ++++|++||++||++|.+     .+++|  +++|||||+|++|+|++||++|||. +|    
T Consensus        24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~-----k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G----   91 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFL-----DYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNG----   91 (105)
T ss_dssp             EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTT----
T ss_pred             EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHH-----HhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCC----
Confidence            36677777764  6887 999999999999999964     46787  5999999999999999999999994 66    


Q ss_pred             CeEEEEEEeCCC
Q 033465           84 GVTTMHVVVQPP   95 (118)
Q Consensus        84 ~~~tmhlv~~~~   95 (118)
                        .++||++-..
T Consensus        92 --~t~hL~l~~~  101 (105)
T 4dbg_A           92 --DSAYLYLLSA  101 (105)
T ss_dssp             --CEEEEEECCC
T ss_pred             --CEEEEEEEec
Confidence              3788887543

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.62  E-value=1.3e-15  Score=108.40  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE-e-CCeecCCCCcccccCCCCCCCCCCe
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-S-AGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI-~-~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ++|+|++.+|+++. +++++++||++||++|++.     .++|  +++|||+ | +|+.|+|+.+|++|+|.++      
T Consensus         3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~-----~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~------   68 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQK-----IGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPG------   68 (159)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHH-----HCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTT------
T ss_pred             eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCC------
Confidence            78999999999998 9999999999999999644     5677  5999999 9 8999999999999999987      


Q ss_pred             EEEEEEeCC-CCc
Q 033465           86 TTMHVVVQP-PST   97 (118)
Q Consensus        86 ~tmhlv~~~-~~~   97 (118)
                      .++|++++. +++
T Consensus        69 ~~l~l~~~~~~~~   81 (159)
T 3rt3_B           69 STVLLVVDKSDEP   81 (159)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CEEEEEccCCCCc
Confidence            488999984 444

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.62  E-value=1.3e-15  Score=99.49  Aligned_cols=70  Identities=21%  Similarity=0.181  Sum_probs=59.9

Q ss_pred             EEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEE
Q 033465           11 KFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHV   90 (118)
Q Consensus        11 ~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhl   90 (118)
                      .+++.+|+++. +++++++||++||++|++.     .++|  +++|||+|.||.|+|+.+|++|+|.+|      .+++|
T Consensus        15 ~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l   80 (85)
T 2kd0_A           15 LTVKFGGKSIP-LSVSPDCTVKDLKSQLQPI-----TNVL--PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLML   80 (85)
T ss_dssp             EEEEETTEEEE-EEECTTSBHHHHHHHHHHH-----HCCC--TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEE
T ss_pred             EEEEECCEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEE
Confidence            44556899998 9999999999999999644     5676  599999999999999999999999977      47888


Q ss_pred             EeCC
Q 033465           91 VVQP   94 (118)
Q Consensus        91 v~~~   94 (118)
                      +..+
T Consensus        81 ~~s~   84 (85)
T 2kd0_A           81 MASQ   84 (85)
T ss_dssp             ECCC
T ss_pred             EEeC
Confidence            7654

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.60  E-value=2.3e-15  Score=121.75  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=71.7

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      ...++|+||+.+|+++. ++|++++||.+||++|...|  +.+++|  +++|||||.||+|+|+.+|++|+|++++    
T Consensus         5 ~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~--~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs----   75 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEK--GRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN----   75 (368)
T ss_dssp             -CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHT--CSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred             CceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHh--CcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence            45689999999999998 99999999999999998764  235676  5999999999999999999999999875    


Q ss_pred             eEEEEEEeCCCCch
Q 033465           85 VTTMHVVVQPPSTE   98 (118)
Q Consensus        85 ~~tmhlv~~~~~~~   98 (118)
                       +.+|++.++.++.
T Consensus        76 -tIv~lv~k~~~~~   88 (368)
T 1oqy_A           76 -FVVVMVTKTKAGQ   88 (368)
T ss_dssp             -CEEEEEECCCSSS
T ss_pred             -EEEEEEecCCCCC
Confidence             3558888887654

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.60  E-value=3.7e-15  Score=104.29  Aligned_cols=76  Identities=25%  Similarity=0.378  Sum_probs=67.3

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++.+|+.+. +++++++||++||++|++.     .++|  +++|||+|.|+.|+|+.+|++|+|.++      .+
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~------~~   66 (152)
T 3b08_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (152)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCC------Ce
Confidence            57899999999998 9999999999999999654     4666  599999999999999999999999987      38


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++.+..++
T Consensus        67 l~l~~~~~~~   76 (152)
T 3b08_A           67 LHLVLRLRGG   76 (152)
T ss_dssp             EEEEECCTTC
T ss_pred             eEEEeecccc
Confidence            8998887765

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.59  E-value=3.1e-15  Score=98.53  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             eeEEEEEe--CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe-------CCeecCCCCcccccCCC
Q 033465            7 QLEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-------AGKILENNRTLGECRSP   77 (118)
Q Consensus         7 ~i~i~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~-------~Gk~L~D~~tL~~~~i~   77 (118)
                      .|.|.|..  ..++..+ ..|++++||++||++|+     +.+++|  +++|||||       .|++|+|+++|++|+|.
T Consensus         2 ~V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki~-----~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~   73 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPE-KRYGLAQTIESIKENVF-----THFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCR   73 (86)
T ss_dssp             EEEEEEEETTCSCCEEE-EEEETTSBHHHHHHHHH-----TTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCC
T ss_pred             EEEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHHH-----HHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCC
Confidence            45666654  3444456 89999999999999994     567888  59999997       69999999999999999


Q ss_pred             CCCCCCCeEEEEEEeCCC
Q 033465           78 LCDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        78 ~~~~p~~~~tmhlv~~~~   95 (118)
                      +|      .++||+-..+
T Consensus        74 ~g------~~ihlvd~~P   85 (86)
T 4b6w_A           74 DE------FVIHVVDLQP   85 (86)
T ss_dssp             TT------CEEEEEECCC
T ss_pred             CC------CEEEEEeCCC
Confidence            88      4899987644

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=1.5e-15  Score=101.16  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      .++.|+|+|+. .|+++. +++++++||.+||++|++.     .++|  +++|||+|.||.|+| .+|++|+|.++    
T Consensus        14 ~~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~-----tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g----   79 (95)
T 1v86_A           14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSI-----TGLP--PAMQKVMYKGLVPED-KTLREIKVTSG----   79 (95)
T ss_dssp             CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHH-----HCSC--STTCCCBSSSBCCSS-SBHHHHCCCTT----
T ss_pred             CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeeCCc-CcHHHCCCCCC----
Confidence            34668899985 688888 9999999999999999643     5677  599999999999955 49999999977    


Q ss_pred             CeEEEEEEeCCC
Q 033465           84 GVTTMHVVVQPP   95 (118)
Q Consensus        84 ~~~tmhlv~~~~   95 (118)
                        .++||+....
T Consensus        80 --~~i~lv~~~~   89 (95)
T 1v86_A           80 --AKIMVVGSTI   89 (95)
T ss_dssp             --EEEEECCSSC
T ss_pred             --CEEEEEeccc
Confidence              5788877653

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=95.66  Aligned_cols=72  Identities=13%  Similarity=0.051  Sum_probs=59.5

Q ss_pred             eeEEEEEeCCCceee-ee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC--CeecCCCCcccccCCCCCCCC
Q 033465            7 QLEIKFRLTDGSDIG-PK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~-~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~--Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      .++|+|++..|+.+. .+ +++|++||++||++|.+.    .+++|  +++|||+|.  ||+|+|+.+|++|+|.++   
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~----~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~---   80 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKT----HPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTT---   80 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHH----CSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSE---
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHH----hcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCC---
Confidence            388999999887752 16 899999999999999753    24565  599999987  999999999999999976   


Q ss_pred             CCeEEEEE
Q 033465           83 GGVTTMHV   90 (118)
Q Consensus        83 ~~~~tmhl   90 (118)
                         .++|+
T Consensus        81 ---stl~~   85 (88)
T 2dzj_A           81 ---ATLYF   85 (88)
T ss_dssp             ---EEEEE
T ss_pred             ---CEEEE
Confidence               46664

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.55  E-value=3.5e-16  Score=116.75  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=1.2

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+|++++|+++. ++|++++||.+||++|.     +.+++|  +++|||||+|++|+|+.+|+     ++      +|
T Consensus         1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~-----~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~------ST   61 (189)
T 2xzm_9            1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQIS-----QDMGFE--IDMMTLVNNGFIAPNTELVT-----DD------VT   61 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEE-EEECCcChHHHHHHHHH-----HHhCcC--hhHEEEEecCeECCCCCccc-----CC------CE
Confidence            57899999999998 99999999999999994     557787  59999999999999999998     34      58


Q ss_pred             EEEEeCCCCchh
Q 033465           88 MHVVVQPPSTEK   99 (118)
Q Consensus        88 mhlv~~~~~~~~   99 (118)
                      +||++++.++.+
T Consensus        62 LhLvlRLrGG~~   73 (189)
T 2xzm_9           62 YYLSLKLLGGKK   73 (189)
T ss_dssp             ----------CC
T ss_pred             EEEEEecCCCcc
Confidence            999999998865

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.55  E-value=9.7e-15  Score=115.79  Aligned_cols=78  Identities=24%  Similarity=0.385  Sum_probs=67.3

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ....++|+|++.+|+++. +++++++||++||++|.+.     .++|  +++|||||.||.|+|+.+|++|+|.++    
T Consensus       230 ~~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~-----~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~g----  297 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----  297 (307)
T ss_dssp             SCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence            456799999999999998 9999999999999999643     5676  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCC
Q 033465           84 GVTTMHVVVQPP   95 (118)
Q Consensus        84 ~~~tmhlv~~~~   95 (118)
                        .++||++|++
T Consensus       298 --stL~LvlRLr  307 (307)
T 3ai5_A          298 --STLHLVLRLR  307 (307)
T ss_dssp             --CEEEEEC---
T ss_pred             --CEEEEEEeCC
Confidence              4889998863

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=7.4e-15  Score=99.46  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeecCCCCcccccCCCCCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.+.+++.+|+++. +++++++||++||++|+     +.+++|  +++|||+|  .|+ |+|+.+|++|+|+.|     
T Consensus         8 ~m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~-----~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g-----   73 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVD-VVLEDTCTVGEIKQILE-----NELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN-----   73 (100)
T ss_dssp             CEEEEEEECSSCEEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE-----
T ss_pred             ceEEEEEEeCCeEEE-EEECCCCcHHHHHHHHH-----HHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC-----
Confidence            455566667899998 99999999999999995     457887  58999997  777 999999999999976     


Q ss_pred             eEEEEEEeCCCCchh
Q 033465           85 VTTMHVVVQPPSTEK   99 (118)
Q Consensus        85 ~~tmhlv~~~~~~~~   99 (118)
                       .+|||+++...+..
T Consensus        74 -stL~lvl~~~~~~~   87 (100)
T 2dzm_A           74 -NSLYVLTPDLPPPS   87 (100)
T ss_dssp             -EEEEECCSSSCCCC
T ss_pred             -CEEEEEecCCCCCc
Confidence             69999998877544

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.55  E-value=1e-14  Score=97.65  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             CceeEEEEEeCCCc--eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC--Ce---e-cCCCCcccccCC
Q 033465            5 QDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GK---I-LENNRTLGECRS   76 (118)
Q Consensus         5 ~~~i~i~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~--Gk---~-L~D~~tL~~~~i   76 (118)
                      .+.|.|.|+...+.  .++ +++++++||++||++|.     +.+++|  +++|||||.  |+   . ++|+++|++|+|
T Consensus        13 ~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~-----~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i   84 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLE-----ILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYAN   84 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHH-----HHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCC
T ss_pred             CCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHH-----HHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCc
Confidence            56788888876654  787 99999999999999995     457888  599999998  55   3 499999999999


Q ss_pred             CCCCCCCCeEEEEEEe
Q 033465           77 PLCDIPGGVTTMHVVV   92 (118)
Q Consensus        77 ~~~~~p~~~~tmhlv~   92 (118)
                      .+|      .++||+-
T Consensus        85 ~~g------stihlvD   94 (95)
T 2kjr_A           85 SDG------LRLHVVD   94 (95)
T ss_dssp             SSS------CEEEEEE
T ss_pred             CCC------CEEEEEC
Confidence            987      4888863

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.54  E-value=1.8e-14  Score=96.87  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             CCCCceeEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe---e----cCCCCccc
Q 033465            2 ASVQDQLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK---I----LENNRTLG   72 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk---~----L~D~~tL~   72 (118)
                      +-+++.|.|.|.....  ..++ ++|++++||++||++|.     +.+++|  +++|||||.|+   .    ++|+++|+
T Consensus         9 ~~~~~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe-----~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~   80 (97)
T 2kj6_A            9 SHGDDSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLW-----KKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLG   80 (97)
T ss_dssp             CCCCCCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHH-----HHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHH
T ss_pred             cCCCceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHH-----HHHCcC--HHHeEEEEecCCCcccceecCCcCCHH
Confidence            3467889999987554  4677 99999999999999995     457888  59999999983   3    59999999


Q ss_pred             ccCCCCCCCCCCeEEEEEEeC
Q 033465           73 ECRSPLCDIPGGVTTMHVVVQ   93 (118)
Q Consensus        73 ~~~i~~~~~p~~~~tmhlv~~   93 (118)
                      +|+|.+|      .++||+-.
T Consensus        81 ~Y~I~~g------~~Ihlvd~   95 (97)
T 2kj6_A           81 FFSPFDG------FRLHIIDL   95 (97)
T ss_dssp             HHCCCSC------CEEEEEEC
T ss_pred             HCCCCCC------CEEEEEeC
Confidence            9999987      47888753

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.51  E-value=3.3e-14  Score=94.99  Aligned_cols=82  Identities=16%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      ...+.|+|+|+..+|+.+. +.+.+++++..|++++.+     ..++|  ++++||||.|+.|++++|+++|++.++|  
T Consensus         3 ~~~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD--   72 (94)
T 2io1_B            3 HMNDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED--   72 (94)
T ss_dssp             ---CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTC--
T ss_pred             CCCCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC--
Confidence            3456799999999999998 999999999999999964     45666  5899999999999999999999999986  


Q ss_pred             CCeEEEEEEeCCCCch
Q 033465           83 GGVTTMHVVVQPPSTE   98 (118)
Q Consensus        83 ~~~~tmhlv~~~~~~~   98 (118)
                          +||++++..++.
T Consensus        73 ----~Idv~~~~~GG~   84 (94)
T 2io1_B           73 ----TIDVFQQQTGGV   84 (94)
T ss_dssp             ----EEEEEECCEESC
T ss_pred             ----EEEEEEeccCCC
Confidence                889999988773

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=1e-13  Score=91.99  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             CCCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---ee----cCCCCccccc
Q 033465            3 SVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGEC   74 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---k~----L~D~~tL~~~   74 (118)
                      +.-+.|.|.|+..... .++ +++++++||++||++|+     +.+++|  +++|||+|.|   +.    |+|+.+|++|
T Consensus         3 ~~~~~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~-----~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y   74 (95)
T 1v6e_A            3 SGSSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLE-----LVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSY   74 (95)
T ss_dssp             SCCCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHH-----HHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSS
T ss_pred             CCCcEEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHH-----HHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHC
Confidence            4455688888875543 577 99999999999999995     446787  5999999987   43    5899999999


Q ss_pred             CCCCCCCCCCeEEEEEEeC
Q 033465           75 RSPLCDIPGGVTTMHVVVQ   93 (118)
Q Consensus        75 ~i~~~~~p~~~~tmhlv~~   93 (118)
                      +|.+|      .++||+..
T Consensus        75 ~i~~g------~~l~v~d~   87 (95)
T 1v6e_A           75 PVDDG------CRIHVIDH   87 (95)
T ss_dssp             SCCTT------CEEEEBCC
T ss_pred             CCCCC------CEEEEEEC
Confidence            99987      37888753

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.48  E-value=5e-14  Score=95.59  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecC-CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-----------e----c
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-----------I----L   65 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-----------~----L   65 (118)
                      +++.+.|.|+||+.+|.. . ++++ +++||.+||++|.+.     .++|  +++|||+|.|+           .    +
T Consensus         2 ~~~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~-----~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l   72 (107)
T 1wf9_A            2 SSGSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQ-----LQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMA   72 (107)
T ss_dssp             CSSCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHH-----SCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSC
T ss_pred             CCCCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHH-----hCcC--cccCEEEECCccccccCccccccccccC
Confidence            355667999999999976 5 8999 999999999999644     5676  59999999998           4    6


Q ss_pred             CCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465           66 ENNRTLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        66 ~D~~tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                      +|+.+|++|||..|+      ++||+...
T Consensus        73 ~d~~tL~~~gi~~G~------~L~l~~~~   95 (107)
T 1wf9_A           73 DPNLRISSLNLAHGS------MVYLAYEG   95 (107)
T ss_dssp             CTTCBGGGTCCCTTC------EEECCCSS
T ss_pred             CCCCCHHHCCCCCCC------EEEEEeCC
Confidence            899999999999885      78887764

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=4.6e-13  Score=89.05  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=70.7

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.|+|+|+..+|+.+. +.+.+++++..|++++.++     .++|  ++++||+|.|+.|.+++|++++++.+||     
T Consensus         4 ~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD-----   70 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED-----   70 (91)
T ss_dssp             CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----TTCC--STTEEEEETTEECCTTCCTTTTTCCTTE-----
T ss_pred             CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence            5699999999999998 9999999999999999644     5665  5899999999999999999999999885     


Q ss_pred             EEEEEEeCCCCch
Q 033465           86 TTMHVVVQPPSTE   98 (118)
Q Consensus        86 ~tmhlv~~~~~~~   98 (118)
                       +|+++++..++.
T Consensus        71 -~Idv~~~q~gg~   82 (91)
T 2io0_B           71 -TIDVFQQQTGGV   82 (91)
T ss_dssp             -EEEEEECCCCCC
T ss_pred             -EEEEEEeccCCc
Confidence             889999988764

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.43  E-value=6.1e-13  Score=92.16  Aligned_cols=76  Identities=13%  Similarity=0.189  Sum_probs=61.6

Q ss_pred             eeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC---ee----cCCCCcccccCCCC
Q 033465            7 QLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGECRSPL   78 (118)
Q Consensus         7 ~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G---k~----L~D~~tL~~~~i~~   78 (118)
                      .|.|.|+...+. .++ +.+++++||++||++|.     ...++|  +++|||+|.|   +.    ++|+.+|++|||.+
T Consensus         6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~-----~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~   77 (122)
T 1t0y_A            6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLE-----LVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD   77 (122)
T ss_dssp             EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred             EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHH-----HHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence            688888775543 576 89999999999999995     457887  5999999987   43    58999999999997


Q ss_pred             CCCCCCeEEEEEEeCCCC
Q 033465           79 CDIPGGVTTMHVVVQPPS   96 (118)
Q Consensus        79 ~~~p~~~~tmhlv~~~~~   96 (118)
                      |      .++||+...++
T Consensus        78 g------~~ihvvd~~p~   89 (122)
T 1t0y_A           78 G------YRIHAVDVTGG   89 (122)
T ss_dssp             S------EEEEEEECTTC
T ss_pred             C------CEEEEEeCCCC
Confidence            7      58998874433

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.39  E-value=1.4e-12  Score=86.80  Aligned_cols=79  Identities=16%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      ...|.|+++..+|+.+. +.+.+++++..|++++.++     .+++  ++++||+|.|+.|.+++|+++|++.++|    
T Consensus        15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD----   82 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED----   82 (93)
T ss_dssp             CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHH-----hCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            45799999999999998 9999999999999999644     5665  5899999999999999999999999885    


Q ss_pred             eEEEEEEeCCCCc
Q 033465           85 VTTMHVVVQPPST   97 (118)
Q Consensus        85 ~~tmhlv~~~~~~   97 (118)
                        +||++++..|+
T Consensus        83 --~Idv~~~q~GG   93 (93)
T 2d07_B           83 --TIDVFQQQTGG   93 (93)
T ss_dssp             --EEEEEECC---
T ss_pred             --EEEEEeeccCC
Confidence              88999887664

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=1.9e-12  Score=88.07  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.|+|+|+..+|+.+. +.+.+++++..|++++.++     .+++  ++++||+|.|+.|.+++|+++|++.++|    
T Consensus        22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek-----~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD----   89 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED----   89 (104)
T ss_dssp             SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHH-----HTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred             CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            45799999999999998 9999999999999999644     5665  5899999999999999999999999885    


Q ss_pred             eEEEEEEeCCCCch
Q 033465           85 VTTMHVVVQPPSTE   98 (118)
Q Consensus        85 ~~tmhlv~~~~~~~   98 (118)
                        +||++++..++.
T Consensus        90 --~Idv~~~q~GG~  101 (104)
T 1wz0_A           90 --TIDVFQQQTSGP  101 (104)
T ss_dssp             --EEEECCCCCCCS
T ss_pred             --EEEEEEeccCCC
Confidence              889999888764

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.34  E-value=3.7e-12  Score=80.71  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |+|+++..+|+.+. +.+.+++++..|++++.++     .++|  ++++||+|.|+.|.+++|++++++.+||      +
T Consensus         2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD------~   67 (72)
T 1wm3_A            2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED------T   67 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHH-----HTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred             EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence            78999999999998 9999999999999999643     5665  5899999999999999999999999885      6


Q ss_pred             EEEE
Q 033465           88 MHVV   91 (118)
Q Consensus        88 mhlv   91 (118)
                      +|+.
T Consensus        68 Idv~   71 (72)
T 1wm3_A           68 IDVF   71 (72)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.33  E-value=1e-12  Score=104.42  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=62.9

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      .+.|.|+|+. +|+++. +++++++||++||++|++     ..++|  +++||||   |+|++|+|+.+|++|+|++|  
T Consensus         3 ~~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~-----~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g--   71 (320)
T 3shq_A            3 VKEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFR-----KTQVR--PERQKLLNLKYKGKTAADNVKISALELKPN--   71 (320)
T ss_dssp             -CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHH-----HHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC----
T ss_pred             CceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHH-----HHCcC--HHHeEEeecccCCcccCccccHHHcCCCCC--
Confidence            4668888886 799998 999999999999999964     46787  5999999   89999999999999999987  


Q ss_pred             CCCeEEEEEEeCCC
Q 033465           82 PGGVTTMHVVVQPP   95 (118)
Q Consensus        82 p~~~~tmhlv~~~~   95 (118)
                          .++||+-.+.
T Consensus        72 ----~~l~L~gs~~   81 (320)
T 3shq_A           72 ----FKLMMVGSTE   81 (320)
T ss_dssp             ----CEEEEECCCC
T ss_pred             ----CEEEEEccch
Confidence                3777765543

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.32  E-value=6.8e-12  Score=81.00  Aligned_cols=74  Identities=9%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             CCCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ++++.|+|+++..+|+ .+. +.+.+++++..|++++.++     .+++  ++++||+|.|+.|.+++|++++++.+|| 
T Consensus         3 ~~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~-----~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD-   73 (79)
T 3a4r_A            3 LGSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEA-----MGLS--GHKLSFFFDGTKLSGKELPADLGLESGD-   73 (79)
T ss_dssp             TCCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHH-----HTCT--TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred             CCCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence            3567799999999996 888 9999999999999999644     5665  5899999999999999999999999986 


Q ss_pred             CCCeEEEEE
Q 033465           82 PGGVTTMHV   90 (118)
Q Consensus        82 p~~~~tmhl   90 (118)
                           +||+
T Consensus        74 -----~Idv   77 (79)
T 3a4r_A           74 -----LIEV   77 (79)
T ss_dssp             -----EEEE
T ss_pred             -----EEEE
Confidence                 6665

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.30  E-value=2.7e-12  Score=83.51  Aligned_cols=72  Identities=13%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             eEEEEEeCCCceeeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eecC---CCCcccccCCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE---NNRTLGECRSPLCDI   81 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L~---D~~tL~~~~i~~~~~   81 (118)
                      ++|+||+.+|+..  ++ +++++||.+||++|.++     .++|  +++|||+|++  |.|+   |+.+|++|||..|+ 
T Consensus         1 m~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~-----~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~-   70 (86)
T 2kzr_A            1 WRVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAI-----TGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD-   70 (86)
T ss_dssp             CCEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHH-----TCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred             CEEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHH-----hCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence            4689999999665  67 99999999999999754     4566  5899999984  8874   78899999999874 


Q ss_pred             CCCeEEEEEEeCC
Q 033465           82 PGGVTTMHVVVQP   94 (118)
Q Consensus        82 p~~~~tmhlv~~~   94 (118)
                           ++||....
T Consensus        71 -----~l~v~~~~   78 (86)
T 2kzr_A           71 -----MLIVEEDQ   78 (86)
T ss_dssp             -----EEECCCCS
T ss_pred             -----EEEEEeCC
Confidence                 77876553

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.29  E-value=7.8e-12  Score=85.42  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.|+|+|+. +|+.+. +.+.+++++..|++++.++     .+++  ++++||+|.|+.|.+++|++++++.++|    
T Consensus        29 ~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek-----~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD----   95 (106)
T 2eke_C           29 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND----   95 (106)
T ss_dssp             CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHH-----hCCC--cccEEEEECCeEcCCCCCHHHcCCCCCC----
Confidence            3569999999 999998 9999999999999999644     5665  5899999999999999999999999885    


Q ss_pred             eEEEEEEeCCCCc
Q 033465           85 VTTMHVVVQPPST   97 (118)
Q Consensus        85 ~~tmhlv~~~~~~   97 (118)
                        +|+++++..|+
T Consensus        96 --~Idv~~~q~GG  106 (106)
T 2eke_C           96 --IIEAHREQIGG  106 (106)
T ss_dssp             --EEEEEECC---
T ss_pred             --EEEEEeecccC
Confidence              88999887664

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.29  E-value=4.2e-12  Score=87.24  Aligned_cols=79  Identities=14%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..|.|+|+..+|+.+. +.+.+++++..|++++.++     .++|  ++++||||.|+.|.+++|+++|++.++|     
T Consensus        25 ~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek-----~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD-----   91 (110)
T 2k8h_A           25 ALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKK-----QGIS--RNSVRFLFDGTPIDETKTPEELGMEDDD-----   91 (110)
T ss_dssp             CCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHH-----HTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEE-----
T ss_pred             CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence            4599999999999998 9999999999999999643     5665  5899999999999999999999999885     


Q ss_pred             EEEEEEeCCCCch
Q 033465           86 TTMHVVVQPPSTE   98 (118)
Q Consensus        86 ~tmhlv~~~~~~~   98 (118)
                       +|++++...++-
T Consensus        92 -~Idv~~~q~Gg~  103 (110)
T 2k8h_A           92 -VIDAMVEQTGGL  103 (110)
T ss_dssp             -EEEEECCCCCC-
T ss_pred             -EEEEEEcccCcc
Confidence             889999988764

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.00  E-value=2.9e-09  Score=70.43  Aligned_cols=77  Identities=18%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             CCceeEEEEEe---CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC------ee-c-CCCCccc
Q 033465            4 VQDQLEIKFRL---TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KI-L-ENNRTLG   72 (118)
Q Consensus         4 ~~~~i~i~~~~---~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G------k~-L-~D~~tL~   72 (118)
                      ....|.|.|+.   .+|..++ ..|++++||++||.+|+..     -++|  ++.|||.|.+      .+ | +|..+|+
T Consensus         6 ~~~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~-----~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~   77 (97)
T 1wjn_A            6 SGQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRL-----LKVP--VSELLLSYESSKMPGREIELENDLQPLQ   77 (97)
T ss_dssp             SSCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTT-----TTCC--TTTCEEEEECTTSCSCEEECCCSSSBSG
T ss_pred             cCccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHH-----HCCC--hhHeEEEEEcCCCCceeeccCCCcccHh
Confidence            34568888875   4677887 9999999999999999643     4676  5999999873      22 4 7888999


Q ss_pred             ccCCCCCCCCCCeEEEEEEeCC
Q 033465           73 ECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        73 ~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                      .|++.+|+      ++||....
T Consensus        78 ~y~i~~G~------~I~V~d~~   93 (97)
T 1wjn_A           78 FYSVENGD------CLLVRWSG   93 (97)
T ss_dssp             GGTCCTTC------EEEEECCS
T ss_pred             hcCCCCCC------EEEEEecC
Confidence            99999885      77877643

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.91  E-value=6.8e-09  Score=71.81  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=65.7

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.|+|+|+..+|..+. |.+.+++++..|++.+.++     .+++  ++++||+|.|+.|.+++|.+++++.+||     
T Consensus        39 ~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er-----~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD-----  105 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED-----  105 (115)
T ss_dssp             CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--TTSEEEEETTEECCTTCCTTTTTCCTTC-----
T ss_pred             CeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--hhhEEEEECCeECCCCCCHHHcCCCCCC-----
Confidence            5699999999999998 9999999999999999654     4554  6999999999999999999999999987     


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                       +|++.++-
T Consensus       106 -~IdV~~~Q  113 (115)
T 3kyd_D          106 -VIEVYQEQ  113 (115)
T ss_dssp             -EEEEEECC
T ss_pred             -EEEEEeec
Confidence             67777653

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.6e-08  Score=75.82  Aligned_cols=81  Identities=11%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+-|+|+|+ .+|..+. +.+.+++++..|++.+.+     +.++|  .+++||+|.|+.|.+++|.+++++.+||    
T Consensus        27 ~~~I~LkV~-~~g~~v~-fkIk~~t~l~kL~~ay~e-----r~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD----   93 (200)
T 3pge_A           27 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND----   93 (200)
T ss_dssp             CCCEEEEEE-CSSCEEE-EEECTTSCTHHHHHHHHH-----HHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEe-cCCCEEE-EEEecCCHHHHHHHHHHH-----HhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            345899997 4899998 999999999999999964     45665  5999999999999999999999999985    


Q ss_pred             eEEEEEEeCCCCchhh
Q 033465           85 VTTMHVVVQPPSTEKA  100 (118)
Q Consensus        85 ~~tmhlv~~~~~~~~~  100 (118)
                        +|+++++..++.+.
T Consensus        94 --~Idv~~~q~gg~kd  107 (200)
T 3pge_A           94 --IIEAHREQIGGGGE  107 (200)
T ss_dssp             --EEEEEECCSCCC-C
T ss_pred             --EEEEEeccCcCcCc
Confidence              88999999888764

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.69  E-value=3e-08  Score=74.36  Aligned_cols=81  Identities=11%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.|+|+|+ .+|..+. |.|.+++++..|++.+.++     .+++  ++++||+|.|+.|.+++|.+++++.++|    
T Consensus        55 ~e~InLKVk-~dG~eV~-FKIKrtTpL~KLmeAYcER-----qGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGD----  121 (207)
T 3tix_A           55 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLTFLYDGIEIQADQTPEDLDMEDND----  121 (207)
T ss_dssp             CCEEEEEEE-CSSCEEE-EEEETTSCTHHHHHHHHHH-----TTCC--GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred             CCcEEEEEe-cCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence            345899997 4899998 9999999999999999654     4565  5999999999999999999999999986    


Q ss_pred             eEEEEEEeCCCCchhh
Q 033465           85 VTTMHVVVQPPSTEKA  100 (118)
Q Consensus        85 ~~tmhlv~~~~~~~~~  100 (118)
                        +|+++++..++...
T Consensus       122 --tIDV~leQ~GG~~~  135 (207)
T 3tix_A          122 --IIEAHREQIGGLPS  135 (207)
T ss_dssp             --EEEECCCCCTTGGG
T ss_pred             --EEEEEEeccCCCcc
Confidence              89999999988654

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.40  E-value=3.4e-08  Score=74.94  Aligned_cols=80  Identities=11%  Similarity=0.159  Sum_probs=1.8

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.|+|+| ..+|..+. |.+.+++....|++.+.     ++.+++  ++++||+|.|+.|.+++|.+++++.+||    
T Consensus        19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYc-----ERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGD----   85 (227)
T 3v7o_A           19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND----   85 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHH-----HHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence            34588899 77899998 99999999999999995     445665  5999999999999999999999999986    


Q ss_pred             eEEEEEEeCCCCchh
Q 033465           85 VTTMHVVVQPPSTEK   99 (118)
Q Consensus        85 ~~tmhlv~~~~~~~~   99 (118)
                        +|+++++..|+..
T Consensus        86 --tIDV~leQ~GG~~   98 (227)
T 3v7o_A           86 --IIEAHREQIGGLT   98 (227)
T ss_dssp             ------------CCC
T ss_pred             --EEEEEecccCCch
Confidence              7899998888854

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.31  E-value=1.4e-06  Score=58.19  Aligned_cols=57  Identities=14%  Similarity=0.044  Sum_probs=42.9

Q ss_pred             EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCC
Q 033465           13 RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSP   77 (118)
Q Consensus        13 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~   77 (118)
                      .+..+..+. +.+.++.||..+|++|.+     .+++|  +++|||||.||.|.=+......+++
T Consensus        19 ~~~~a~~h~-v~I~~~etv~~~ke~V~e-----qTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           19 SLQQMTAHK-IYIHSYNTATIFHELVYK-----QTKII--SSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             ETTTTEEEE-EEEETTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             EcccceEEE-EEeccchHHHHHHHHHHH-----HhCCC--HHHHHHHhCCCccccCCCCccccCC
Confidence            345677777 999999999999999954     47887  5899999999977533333444444

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.17  E-value=5e-06  Score=62.00  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ..+.|+|+++. +|..+. +.+..++....|++...+     +.++|  .+++||+|.|+.+.+++|..++.+.++|   
T Consensus        18 ~~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~-----~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d---   85 (209)
T 3uf8_A           18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---   85 (209)
T ss_dssp             CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTE---
T ss_pred             CCCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHH-----hhCCC--hheEEEEECCEeccCCCChHHhhhcccc---
Confidence            45679999987 788887 999999999999999964     45665  5999999999999999999999999875   


Q ss_pred             CeEEEEEEeCCCCch
Q 033465           84 GVTTMHVVVQPPSTE   98 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~   98 (118)
                         +|++..+..++.
T Consensus        86 ---~I~~~~eq~Gg~   97 (209)
T 3uf8_A           86 ---IIEAHREQIGGS   97 (209)
T ss_dssp             ---EEEEECSCTTCC
T ss_pred             ---cchhhccccccc
Confidence               778888877753

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.10  E-value=2.2e-05  Score=52.51  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             CCceeEEEEEeCCCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            4 VQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ..+.|.|+++-.+|. .+. +.+.++++...|.+...++     .+++  ++.+||+|.|+.|..++|.+++++.+||
T Consensus        22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~-----~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD   91 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEA-----MGLS--GRKLSFFFDGTKLSGRELPADLGMESGD   91 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHH-----TTCS--SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred             CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence            346689999988885 777 9999999999999998755     2343  5899999999999999999999999986

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.09  E-value=4.1e-07  Score=73.41  Aligned_cols=82  Identities=11%  Similarity=0.151  Sum_probs=2.0

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ..+.|+|+|+. +|..+. +.+.++++...|++...+     ..+++  ++++||+|.|+.|.+++|.+++++.+||   
T Consensus        18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~-----r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD---   85 (360)
T 3ix6_A           18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---   85 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHH-----HhCCC--cceEEEEECCeECCCCCChHHcCCCccc---
Confidence            34568888886 678887 999999999999999954     45555  5999999999999999999999999986   


Q ss_pred             CeEEEEEEeCCCCchhh
Q 033465           84 GVTTMHVVVQPPSTEKA  100 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~~~  100 (118)
                         +|++..+..+++..
T Consensus        86 ---~Idv~~~Q~g~~~~   99 (360)
T 3ix6_A           86 ---IIEAHREQIGGMRT   99 (360)
T ss_dssp             --------------CHH
T ss_pred             ---hhhhhhccCchHHH
Confidence               78999999999874

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.08  E-value=3.2e-06  Score=54.38  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=47.3

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee-----cCCCCcccccCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-----LENNRTLGECRSPLCD   80 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~-----L~D~~tL~~~~i~~~~   80 (118)
                      .+.|+||..+|...  +++++++|+.+|+++|++..+     ++.  +.+.|.++-..     +.++.+|+++||..||
T Consensus         4 ~m~lRvrs~~G~~R--i~v~~~~t~~~L~~~I~~~~~-----i~~--~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd   73 (80)
T 2pjh_A            4 SIIIRVQSPDGVKR--ITATKRETAATFLKKVAKEFG-----FQN--NGFSVYINRNKTGEITASSSKSLHLLKIKHGD   73 (80)
T ss_dssp             CCCCEEECSSEEEE--CCCCSSCCHHHHHHHHHHHTC-----CCT--TTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred             cEEEEEECCCCCEE--EEcCCcChHHHHHHHHHHHcC-----CCC--CcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence            47899999999555  789999999999999987643     332  33333222222     3477899999999897

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.02  E-value=5.8e-05  Score=49.00  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |.+-++......+. +.+.++++|.+|=.....+     .++|. ...+||.|-|..|+.+.++++|.+.++|
T Consensus        10 ~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~-----~~I~~-~~~IrllFDGdRLdp~~tp~DlemeD~D   75 (82)
T 3goe_A           10 ITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTE-----VKISF-HERIRLEFEGEWLDPNDQVQSTELEDED   75 (82)
T ss_dssp             EEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHH-----HTCCC-CTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred             HHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHH-----cCCCc-CceEEEEEcCcccCccCChhhhCCcCCc
Confidence            56667777777787 9999999999998887543     35663 3499999999999999999999999987

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.74  E-value=4e-06  Score=67.14  Aligned_cols=79  Identities=11%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.|.|+++. +|..+. |.+..+++...|++...++     .+.+  ..++||+|.|+.|.+++|.+++++.+||     
T Consensus        29 ~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~-----~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d-----   94 (389)
T 4da1_A           29 THINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQAPEDLDMEDND-----   94 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHH-----hCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence            458888887 788887 9999999999999999544     4555  6999999999999999999999999986     


Q ss_pred             EEEEEEeCCCCchh
Q 033465           86 TTMHVVVQPPSTEK   99 (118)
Q Consensus        86 ~tmhlv~~~~~~~~   99 (118)
                       +|++.+...++..
T Consensus        95 -~i~~~~~q~gg~n  107 (389)
T 4da1_A           95 -IIEAHREQIGGEN  107 (389)
T ss_dssp             --------------
T ss_pred             -Eeeeeeccccccc
Confidence             6777777776654

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.69  E-value=0.00055  Score=43.75  Aligned_cols=67  Identities=18%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec---CCCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L---~D~~tL~~~~i~~   78 (118)
                      .++..+|.||+.+|.++. -.|..++||.+|.+.|...      +.+  ....+|+  |-.|.|   +.+.||.++|+..
T Consensus         4 ~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~~------~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p   74 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK------GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP   74 (84)
T ss_dssp             CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHT------TCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred             CCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHc------CCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence            467789999999999987 8999999999999999753      122  4677887  446777   4567999999985


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      .
T Consensus        75 ~   75 (84)
T 3qx1_A           75 Q   75 (84)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.59  E-value=0.0003  Score=46.95  Aligned_cols=67  Identities=9%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ...|+|+|+. +|..+. |.+-.++-..-|.+...++     .+.+  ++++||+|.|..+.++.|.+++++.++|
T Consensus        19 ~~~IniKV~~-~g~ev~-FkIK~tt~l~KL~~aYc~r-----~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~D   85 (95)
T 2l76_A           19 PRLFPLKIRC-RADLVR-LPLRMSEPLQSVVDHMATH-----LGVS--PSRILLLFGETELSPTATPRTLKLGVAD   85 (95)
T ss_dssp             CCCEEEEEEC-SSSEEE-EEECSSSCTHHHHHHHHHH-----HTSC--GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred             CCeEEEEEEc-CCcEEE-EEEecCChHHHHHHHHHhh-----cCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence            3449999994 787887 9999999999999998644     4543  6999999999999999999999999997

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.51  E-value=0.00027  Score=45.76  Aligned_cols=70  Identities=16%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             eEEEEEe--CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |+|++.+  -.|+++. +.++...||+.|++.+++...-+  ..+.+--++|..-.|.+|.++++|++|++.+||
T Consensus         5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD   76 (81)
T 2bps_A            5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD   76 (81)
T ss_dssp             EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred             EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence            5666665  5799999 99999999999999998764322  222221589999999999999999999999997

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.26  E-value=0.0021  Score=43.22  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecC---CCCcccccCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSP   77 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~---D~~tL~~~~i~   77 (118)
                      +.+....|.||+.+|.++. -.|..++||.+|.+.|....     +.+  .....|+  |--|.|.   .++||.++|+.
T Consensus         9 ~~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~-----~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~   80 (109)
T 2dzk_A            9 DRSTIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTV-----GNT--YGNFSLATMFPRREFTREDYKRRLLDLELA   80 (109)
T ss_dssp             CCSCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHH-----TTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCS
T ss_pred             CCCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhcc-----CCC--CCceEEEcCCCCcCCcccccCCCHHHCCCC
Confidence            4456799999999999998 99999999999999997652     111  2445565  3456775   36799999998


Q ss_pred             C
Q 033465           78 L   78 (118)
Q Consensus        78 ~   78 (118)
                      .
T Consensus        81 p   81 (109)
T 2dzk_A           81 P   81 (109)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.17  E-value=0.0039  Score=41.82  Aligned_cols=68  Identities=12%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeecC--CCCcccccCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILE--NNRTLGECRSPL   78 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L~--D~~tL~~~~i~~   78 (118)
                      +.+..++|.||+.+|.++. -.|..++||.+|...|..+      +.  .....+|+.  =.|.|.  .+.||.++||..
T Consensus        19 ~~~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~------~~--~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p   89 (109)
T 2cr5_A           19 TAEEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV------GY--HKSLYRLSTSFPRRALEVEGGSSLEDIGITV   89 (109)
T ss_dssp             SCSSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH------TC--CTTTEEEECSSSCCBCCCCSSCBHHHHTCSS
T ss_pred             CCCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CC--CCCCeEEEeCCCCcCCCCCCCCCHHHcCCCC
Confidence            3456799999999999987 8999999999999999754      11  135677764  466775  468999999985


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      .
T Consensus        90 ~   90 (109)
T 2cr5_A           90 D   90 (109)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=97.17  E-value=0.0023  Score=44.18  Aligned_cols=67  Identities=21%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeecCC-CCcccccCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILEN-NRTLGECRSPL   78 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L~D-~~tL~~~~i~~   78 (118)
                      +...+|.||+.+|.++. -.|..++||.+|++.|....|.    ..  .....|+  |-.|.|+| +.||.++|+..
T Consensus        50 ~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~----~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~p  119 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA----MA--ATSFVLMTTFPNKELADENQTLKEANLLN  119 (127)
T ss_dssp             SCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG----GG--TSCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred             CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC----CC--CCCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence            45689999999999998 9999999999999999876431    11  2456666  44678864 68999999984

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.09  E-value=0.0034  Score=49.49  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe------CCeecCCCCcccccCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS------AGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~------~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .+.|+|... +.+.. +.|+|++||+++..+|.++.|+... .+  .+.=-|.-      .|+.|++.+||+.|++..++
T Consensus         3 ~~~~~~~~~-~~~~~-~~f~~~~~v~~~~~~i~e~~~~~~~-~~--~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~   77 (371)
T 3ivf_A            3 ALSLKISIG-NVVKT-MQFEPSTMVYDACRMIRERIPEALA-GP--PNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD   77 (371)
T ss_dssp             CEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHTTCGGGGS-SC--GGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred             cEEEEEEec-ceeEE-EEECCCCCHHHHHHHHHHhcccccC-CC--HHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence            578888888 77787 9999999999999999998875311 11  12333333      37899999999999998775

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.92  E-value=0.0057  Score=42.08  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec--C-CCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL--E-NNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L--~-D~~tL~~~~i~~   78 (118)
                      .+....|.||+.+|.++. -.|..++||.+|.+.|...      +.+  ....+|+  |=.|.|  + .+.||.++|+..
T Consensus        40 ~~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~------~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p  110 (124)
T 1wj4_A           40 NGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP  110 (124)
T ss_dssp             SSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH------HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred             CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence            456799999999999988 9999999999999999653      122  2566776  457778  3 478999999975


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      .
T Consensus       111 s  111 (124)
T 1wj4_A          111 Q  111 (124)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.89  E-value=0.0017  Score=45.35  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCC---------------------------------C--
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT---------------------------------V--   53 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~---------------------------------~--   53 (118)
                      .|+|++.+|...+ +.||.+.+|.+++..|....     +++..                                 -  
T Consensus        13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   86 (128)
T 2kc2_A           13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK   86 (128)
T ss_dssp             EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred             cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence            4889999999999 99999999999999997642     12210                                 0  


Q ss_pred             CceEEEe--CCeecCCCCcccccCCCCCC
Q 033465           54 KDVKLIS--AGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        54 ~~~rLI~--~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ..+||-.  .+.+|+++.+|.+.||.+++
T Consensus        87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~  115 (128)
T 2kc2_A           87 LKQKLHTDDELNWLDHGRTLREQGVEEHE  115 (128)
T ss_dssp             SCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred             HHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence            2455532  35799999999999999875

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.38  E-value=0.056  Score=36.78  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=46.1

Q ss_pred             eeEEEEEeCC--CceeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCeecCCCC---------
Q 033465            7 QLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGKILENNR---------   69 (118)
Q Consensus         7 ~i~i~~~~~~--g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk~L~D~~---------   69 (118)
                      ++.|.+....  +..+. +.+=.-+||.++|+||....=.+.  ...| +++.+.|=+    +|++|.|.+         
T Consensus        11 ~ltl~v~~~~~~~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w   88 (111)
T 4e71_A           11 PLTVSVIVQDEGVDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRW   88 (111)
T ss_dssp             EEEEEEEETTSCCCCEE-EEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred             EEEEEEEecCCCCCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcc
Confidence            3455554433  33454 666688999999999986531111  1223 257787866    356776633         


Q ss_pred             ----cccccCCCCCCCCCCeEEEEEEe
Q 033465           70 ----TLGECRSPLCDIPGGVTTMHVVV   92 (118)
Q Consensus        70 ----tL~~~~i~~~~~p~~~~tmhlv~   92 (118)
                          ||+.|++++|      .+|-++.
T Consensus        89 krLNTL~HY~V~dg------atl~l~~  109 (111)
T 4e71_A           89 KRVNTLMHYNVRDG------ATLILSK  109 (111)
T ss_dssp             CCCCBHHHHTCCTT------CEEEEEE
T ss_pred             eEecchhhcCCCCC------CEEEEEe
Confidence                6777889987      3555544

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.09  E-value=0.14  Score=33.55  Aligned_cols=77  Identities=10%  Similarity=0.062  Sum_probs=58.7

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .+.+.|...+|++.. +.+.|++++.+|=+.--++     -++  ++++-.|-|++|.|+=+..+.-.||+.|      .
T Consensus         9 ~m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K-----~gl--~~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A   74 (90)
T 2al3_A            9 GSAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRR-----QDF--NPSEYDLKFQRTVLDLSLQWRFANLPNN------A   74 (90)
T ss_dssp             -CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHH-----TTC--CGGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred             ccEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHH-----hCC--ChhhCeEEeCCEeccccceeEecCCCCC------C
Confidence            358889999999998 9999999999964444333     233  2578899999999998889999999977      4


Q ss_pred             EEEEEeCCCCc
Q 033465           87 TMHVVVQPPST   97 (118)
Q Consensus        87 tmhlv~~~~~~   97 (118)
                      .+-++.....+
T Consensus        75 kLELv~~s~s~   85 (90)
T 2al3_A           75 KLEMVPVSRSR   85 (90)
T ss_dssp             EEEEECSSSCC
T ss_pred             EEEEEEccCCC
Confidence            66776655443

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.42  E-value=0.36  Score=33.52  Aligned_cols=70  Identities=19%  Similarity=0.246  Sum_probs=44.3

Q ss_pred             CceeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCe-ecCCC-------------CcccccCC
Q 033465           17 GSDIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGK-ILENN-------------RTLGECRS   76 (118)
Q Consensus        17 g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk-~L~D~-------------~tL~~~~i   76 (118)
                      +..+. +.+=.-+||.++|+||....=.+.  ...| .++++.|=+    .|+ +|.|.             -||..|++
T Consensus        16 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V   93 (127)
T 3h6n_A           16 MDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI   93 (127)
T ss_dssp             CCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred             CCcee-eeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence            44454 666688999999999986531111  1233 267888866    344 47652             26778899


Q ss_pred             CCCCCCCCeEEEEEEeCC
Q 033465           77 PLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        77 ~~~~~p~~~~tmhlv~~~   94 (118)
                      ++|      .+|-++.+.
T Consensus        94 ~dg------atv~l~~~~  105 (127)
T 3h6n_A           94 PEG------ASLAMSLID  105 (127)
T ss_dssp             CTT------CEEEEEECC
T ss_pred             CCC------CEEEEEEcc
Confidence            987      366666553

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=93.62  E-value=0.43  Score=33.56  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe----CCe-ecCCCC-------------cccccCCCC
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS----AGK-ILENNR-------------TLGECRSPL   78 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~----~Gk-~L~D~~-------------tL~~~~i~~   78 (118)
                      .+. +.|=.-+||.++|+||....=.+.  ...| .++++-|=+    +|+ +|.|.+             ||+-|++++
T Consensus        42 ~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           42 GVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             cee-EEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            454 677788999999999986410111  1233 256777755    355 476542             889999998


Q ss_pred             CCCCCCeEEEEEEeCCC
Q 033465           79 CDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        79 ~~~p~~~~tmhlv~~~~   95 (118)
                      |      .+|-++.+..
T Consensus       120 g------a~l~l~~~~~  130 (138)
T 2r2o_A          120 G------ATVALVPCLT  130 (138)
T ss_dssp             T------CEEEEEEC--
T ss_pred             C------CEEEEEECCC
Confidence            7      3666665543

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=91.28  E-value=1.9  Score=27.55  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=38.0

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcccCC--C--CCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEKENG--P--RTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~--p--~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      ..+ +++++..||.+|.+.+..++|.-....  +  .-...+.+.-+|+....     +..+++||
T Consensus        28 ~~~-~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGD   87 (98)
T 1vjk_A           28 EEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGD   87 (98)
T ss_dssp             EEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTC
T ss_pred             eEE-EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCC
Confidence            444 788888999999999988776322211  0  00246788889998864     45678886

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=90.49  E-value=0.76  Score=28.48  Aligned_cols=50  Identities=10%  Similarity=0.217  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNR   69 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~   69 (118)
                      ++|++++......+ +++++..||++|=+.+         ++|  ++..-..-+|+++.-++
T Consensus         1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~   50 (74)
T 2l32_A            1 MNVTVEVVGEETSE-VAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ   50 (74)
T ss_dssp             CEEEEECSSSSEEE-EECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred             CEEEEEEeCcccee-EEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence            35677776444454 8999999999998877         344  35666788999886554

>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}

Probab=88.85  E-value=0.67  Score=31.21  Aligned_cols=36  Identities=11%  Similarity=0.222  Sum_probs=33.0

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ   41 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~   41 (118)
                      .+.+.|.+.+.+|--+. +++..+.|+.++|+.+|++
T Consensus        17 ~~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e   52 (108)
T 2v1y_A           17 PPRILVECLLPNGMIVT-LECLREATLITIKHELFKE   52 (108)
T ss_dssp             CSEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred             CCcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence            46799999999999998 9999999999999999975

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=88.58  E-value=1.7  Score=29.59  Aligned_cols=64  Identities=22%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             eecCCcccHHHHHHHhhhhCCCcc--cCCCCCCCceEEEe-CC---e-ecCCC-------------CcccccCCCCCCCC
Q 033465           23 KSFPAATSVATLKESVLSQWPKEK--ENGPRTVKDVKLIS-AG---K-ILENN-------------RTLGECRSPLCDIP   82 (118)
Q Consensus        23 ~~v~~~~TV~~lK~~I~~~wp~~~--~~~p~~~~~~rLI~-~G---k-~L~D~-------------~tL~~~~i~~~~~p   82 (118)
                      +.+=.-+||.++|+||....=.+.  ...| .++++.|=+ .|   + +|.|.             -||+.|++++|   
T Consensus        31 VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg---  106 (117)
T 4e74_A           31 VKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG---  106 (117)
T ss_dssp             EEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT---
T ss_pred             eeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC---
Confidence            556678999999999986531111  1233 257787765 34   3 46552             25777889887   


Q ss_pred             CCeEEEEEEeC
Q 033465           83 GGVTTMHVVVQ   93 (118)
Q Consensus        83 ~~~~tmhlv~~   93 (118)
                         .+|-++.+
T Consensus       107 ---atl~l~~~  114 (117)
T 4e74_A          107 ---SVVALVSK  114 (117)
T ss_dssp             ---CEEEEEEC
T ss_pred             ---CEEEEEeC
Confidence               36666554

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.05  E-value=2  Score=27.47  Aligned_cols=48  Identities=8%  Similarity=0.052  Sum_probs=37.2

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK   63 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk   63 (118)
                      +.+.||+...  -++. +.+++..+..+|+++|.++.+     .|  ++.++|-|.-+
T Consensus         4 ~~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~-----l~--~~~~~LsYk~~   51 (83)
T 1oey_A            4 MAYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLE-----LR--LEHTKLSYRPR   51 (83)
T ss_dssp             SCEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTT-----CC--GGGCCEEECCT
T ss_pred             CcEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhC-----CC--cceeEEEeeCC
Confidence            3467777775  6888 999999999999999987753     33  47788887654

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=86.00  E-value=1.8  Score=28.65  Aligned_cols=37  Identities=14%  Similarity=0.118  Sum_probs=32.2

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ   41 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~   41 (118)
                      ....+.|+|-..+|.... +.|++++|+.+|-+.+..+
T Consensus         6 ~~~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K   42 (100)
T 1wgr_A            6 SGRPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQR   42 (100)
T ss_dssp             CCSCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCS
T ss_pred             cCCCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHH
Confidence            344588999999999999 9999999999999999753

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=85.72  E-value=4.6  Score=24.96  Aligned_cols=57  Identities=7%  Similarity=0.097  Sum_probs=37.8

Q ss_pred             ceeeeeecCCcccHHHHHHHhhhhCCCccc-CCC--CC-CCceEEEeCCeecCCCCcccccCCCCCC
Q 033465           18 SDIGPKSFPAATSVATLKESVLSQWPKEKE-NGP--RT-VKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus        18 ~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~-~~p--~~-~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .... +++++..||++|.+.+..++|.-.. -..  .. ...+++.-+|+....+     ..+++||
T Consensus        18 ~~~~-~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD   78 (89)
T 3po0_A           18 RTVR-VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD   78 (89)
T ss_dssp             SEEE-EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred             CeEE-EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence            4455 8888889999999999988763211 000  00 1247888899988753     4567776

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=85.47  E-value=6.9  Score=26.96  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=34.0

Q ss_pred             eeeeeecCCcccHHHHHHHhhhhCCCcccCCCC--CCCceEEEe-CC---eecCCCC--------------cccccCCCC
Q 033465           19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPR--TVKDVKLIS-AG---KILENNR--------------TLGECRSPL   78 (118)
Q Consensus        19 ~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~--~~~~~rLI~-~G---k~L~D~~--------------tL~~~~i~~   78 (118)
                      .+. +.+=.-+||.++|+||....=.. .+.|.  .++.+.|=+ .|   ++|.|.+              ||+-|++++
T Consensus        40 ~v~-VkVLdCDTItQVKEKILdavYk~-k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D  117 (126)
T 3kuz_A           40 NIS-VNVLDCDTIGQAKEKIFQAFLSK-NGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN  117 (126)
T ss_dssp             EEE-EEEETTCBHHHHHHHHHHHHHHH-HSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred             ceE-eeeecCCcHHHHHHHHHHHHhcc-CCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence            344 66668899999999998642100 12222  145666654 22   3444321              455678887


Q ss_pred             C
Q 033465           79 C   79 (118)
Q Consensus        79 ~   79 (118)
                      |
T Consensus       118 g  118 (126)
T 3kuz_A          118 G  118 (126)
T ss_dssp             T
T ss_pred             C
Confidence            7

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=85.27  E-value=4.5  Score=34.80  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             eeEEEEEeCCC------ceeeeeecCCcccHHHHHHHhhhhCCCc--ccCCCCCCCceEEEe----CCe-ecCCCC----
Q 033465            7 QLEIKFRLTDG------SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS----AGK-ILENNR----   69 (118)
Q Consensus         7 ~i~i~~~~~~g------~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~~rLI~----~Gk-~L~D~~----   69 (118)
                      ++.|.+....|      ..+. +.+=.-+||.++|+||...-=.+  ....| +++++.|=+    .|+ +|.|.+    
T Consensus       257 ~ltL~v~~~~~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~  334 (644)
T 3hm6_X          257 PLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSE  334 (644)
T ss_dssp             EEEEEEECC-------CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             eEEEEEeecCccccCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCccce
Confidence            35555554433      2344 66668899999999998531001  11233 256777765    344 576644    


Q ss_pred             ---------cccccCCCCCCCCCCeEEEEEEeCC
Q 033465           70 ---------TLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        70 ---------tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                               ||+.|++++|.      +|-++.+.
T Consensus       335 ~~~~wkrLNTL~HY~V~dga------~v~L~p~~  362 (644)
T 3hm6_X          335 VQGLWRRLNTLQHYKVPDGA------TVALVPCL  362 (644)
T ss_dssp             EETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred             ecCcceeecchhhcCCCCCc------EEEEEecc
Confidence                     88999999873      56665543

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=84.42  E-value=8.6  Score=28.03  Aligned_cols=66  Identities=15%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             eEEEEEeCCC--ceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEE--Ee-CCe--ecCC-CCcccccCCCCC
Q 033465            8 LEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--IS-AGK--ILEN-NRTLGECRSPLC   79 (118)
Q Consensus         8 i~i~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rL--I~-~Gk--~L~D-~~tL~~~~i~~~   79 (118)
                      +.+++.....  ..+. +.+...+||.+|++.+.+..     ++|. ....||  +| .++  .|+| +.||.+++|.++
T Consensus       128 ~~l~l~~~~~~~~~~~-~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~  200 (217)
T 4a3p_A          128 TELKLCENGNMNNVVT-RRFSKADTIDTIEKEIRKIF-----SIPD-EKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG  200 (217)
T ss_dssp             EEEEEEETTEEEEEEE-EEECTTSBHHHHHHHHHHHT-----TCCT-TSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred             cEEEEEecCCCCcceE-EEEcccchHHHHHHHHHHHh-----CCCC-CCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence            3445544332  2244 77899999999999997653     3543 236888  44 333  6666 469999999987


Q ss_pred             C
Q 033465           80 D   80 (118)
Q Consensus        80 ~   80 (118)
                      .
T Consensus       201 Q  201 (217)
T 4a3p_A          201 Q  201 (217)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=84.32  E-value=6  Score=26.33  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             ceeEEEEEeC------CC--ceeeeeecCC---cccHHHHHHHhhhhCCCcc
Q 033465            6 DQLEIKFRLT------DG--SDIGPKSFPA---ATSVATLKESVLSQWPKEK   46 (118)
Q Consensus         6 ~~i~i~~~~~------~g--~~~~~~~v~~---~~TV~~lK~~I~~~wp~~~   46 (118)
                      +++.|++++.      .|  +.++ ++++.   ..||.+|-+.|.+++|...
T Consensus        10 ~~M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~~~~~   60 (114)
T 1wgk_A           10 APLCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNLLKER   60 (114)
T ss_dssp             CCEEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTTCCSC
T ss_pred             CCcEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHccchh
Confidence            4577777763      23  2454 77773   3699999999999887653

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=83.76  E-value=6.4  Score=33.75  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=47.9

Q ss_pred             eeEEEEEeCCC---ceeeeeecCCcccHHHHHHHhhhhCCCc--ccCCCCCCCceEEEe----CCe-ecCCC--------
Q 033465            7 QLEIKFRLTDG---SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS----AGK-ILENN--------   68 (118)
Q Consensus         7 ~i~i~~~~~~g---~~~~~~~v~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~~rLI~----~Gk-~L~D~--------   68 (118)
                      ++.|.+...+|   ..+. +.|=.-+||.++|+||...-=.+  ....| +++++.|=+    .|+ +|.|.        
T Consensus       233 ~ltL~v~~~~~~~~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~  310 (627)
T 3ig3_A          233 TLTLHCVCPESEGSAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIEC  310 (627)
T ss_dssp             EEEEEEECTTTC--CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred             eEEEEEeccCCCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCccccccC
Confidence            34555544433   3344 66668899999999998531001  11234 367777755    344 56552        


Q ss_pred             -----CcccccCCCCCCCCCCeEEEEEEeCC
Q 033465           69 -----RTLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        69 -----~tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                           -||+.|++++|      .+|-++.+.
T Consensus       311 ~wkrLNTL~HY~V~Dg------a~v~L~p~~  335 (627)
T 3ig3_A          311 DWKRVNSLAHYQVTDG------SLVALVPKQ  335 (627)
T ss_dssp             TEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred             ceeEecchhhcCCCCC------ceEEEEecc
Confidence                 26888999987      366666554

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=82.37  E-value=6.8  Score=35.61  Aligned_cols=85  Identities=16%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCc-ccCCCCCCCceEEEeCCe-----ec-CCCCcccccC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGK-----IL-ENNRTLGECR   75 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~-~~~~p~~~~~~rLI~~Gk-----~L-~D~~tL~~~~   75 (118)
                      +.++.|.|.|.+.+|..+. +++..+.|+.++|+.||++-... ....-.++++-.|.+-.+     .+ ++.+.|.+++
T Consensus        47 ~~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~  125 (1092)
T 2y3a_A           47 ASDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR  125 (1092)
T ss_dssp             SCCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred             CCCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence            3557799999999999998 99999999999999999761110 111112357777777332     24 5567888886


Q ss_pred             CCCCCCCCCeEEEEEEeCCC
Q 033465           76 SPLCDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        76 i~~~~~p~~~~tmhlv~~~~   95 (118)
                      .-.       -.+.++-+..
T Consensus       126 ~~~-------p~l~lve~~~  138 (1092)
T 2y3a_A          126 PFL-------PVLKLVTRSC  138 (1092)
T ss_dssp             BSS-------SCEEEEESCC
T ss_pred             ccc-------eEEEEEecCC
Confidence            542       2567766643

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=81.11  E-value=14  Score=27.35  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=54.6

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe---CCe--ecCCCCcccccCCCCCCC
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGK--ILENNRTLGECRSPLCDI   81 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~---~Gk--~L~D~~tL~~~~i~~~~~   81 (118)
                      +|.++|.+.+| +++ +.+++++|+.+|=+.|.+.     -++.. .+..=|.|   .|.  .|+.++.|.+.++..+  
T Consensus         1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~--   70 (294)
T 1ef1_A            1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKT-----IGLRE-VWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE--   70 (294)
T ss_dssp             CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC--
T ss_pred             CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHH-----cCCCC-cceeEEEEECCCCceeecccccCHHhhccCCC--
Confidence            47889999998 788 9999999999999999764     23322 34555554   233  6788888887765433  


Q ss_pred             CCCeEEEEEEeCCCCc
Q 033465           82 PGGVTTMHVVVQPPST   97 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~   97 (118)
                        .+..+++-++--..
T Consensus        71 --~~~~l~fr~kf~~~   84 (294)
T 1ef1_A           71 --SPLLFKFRAKFYPE   84 (294)
T ss_dssp             --SSEEEEEEESSCCS
T ss_pred             --CCEEEEEEEEEECC
Confidence              23567777765444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-33
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-13
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-05
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	4e-05
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	0.002

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (276), Expect = 2e-33
 Identities = 67/100 (67%), Positives = 88/100 (88%)

Query: 2   ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61
           A V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLISA
Sbjct: 2   AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA 61

Query: 62  GKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAE 101
           GK+LEN++T+ + RSP+ ++ G VTTMHV++Q P TEK +
Sbjct: 62  GKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEK 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (143), Expect = 3e-13
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 6   DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGKI 64
           D + ++  L  G       F    S + + + V   WP + +E    +   ++LI  G+ 
Sbjct: 15  DMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 73

Query: 65  LENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKAEKKAASQPK 109
           L  N TLG  + P     G  T MH+V +    E   +   S P 
Sbjct: 74  LHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRSGPS 114

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 24 SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83
          S     SV  LK  +   +P+         +D +LI +GK+L +++ L +          
Sbjct: 25 SGDRGWSVGHLKAHLSRVYPERPR-----PEDQRLIYSGKLLLDHQCLRDLLPKQEK--- 76

Query: 84 GVTTMHVVVQPPS 96
              +H+V    S
Sbjct: 77 -RHVLHLVCNVKS 88

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85
              S++ LK+ +  +     E+ P   + + LI  G+ L++++TL         I  G 
Sbjct: 35 LGGYSISFLKQLIAGKLQ---ESVPDP-ELIDLIYCGRKLKDDQTLDF-----YGIQPG- 84

Query: 86 TTMHVVV 92
          +T+HV+ 
Sbjct: 85 STVHVLR 91

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.002
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 8  LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN 67
          LE+  +  D          A  +V   KE +         + P   +  +LI  G++L++
Sbjct: 1  LEVLVKTLDSQTR-TFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRVLQD 52

Query: 68 NRTLGECRSPLCDIPGGVTTMHVVVQPP 95
          ++ L E      ++ G    +H+V + P
Sbjct: 53 DKKLQE-----YNVGG--KVIHLVERAP 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.97
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.92
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.86
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.84
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.83
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.83
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.81
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.81
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.81
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.79
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.78
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.76
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.76
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.76
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.75
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.74
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.73
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.7
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.7
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.69
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.69
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.65
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.63
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.62
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.55
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.51
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.5
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.36
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.34
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.21
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	97.76
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.74
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.71
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.46
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	97.06
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	95.71
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	94.0
d1s3si_	50	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.87
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	83.21
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	82.95

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.1e-30  Score=175.26  Aligned_cols=98  Identities=68%  Similarity=1.121  Sum_probs=91.6

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      |.+++.|+|+||+.+|+++.++.|++++||.+||++|++.||.+++++|.++++|||||+||+|+|++||++|+|..|+.
T Consensus         2 ~~~~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~   81 (101)
T d1se9a_           2 AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL   81 (101)
T ss_dssp             CSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred             CCccceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCc
Confidence            56889999999999999986699999999999999999999999999987789999999999999999999999999987


Q ss_pred             CCCeEEEEEEeCCCCchh
Q 033465           82 PGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~~   99 (118)
                      ++.++||||++|++.+.+
T Consensus        82 ~~~~~tmHlVvrpp~~~~   99 (101)
T d1se9a_          82 AGAVTTMHVIIQAPVTEK   99 (101)
T ss_dssp             TTCCEEEEEEECCCSSCC
T ss_pred             CCCceEEEEEeCCCCCcc
Confidence            888999999999987754

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.4e-25  Score=152.59  Aligned_cols=92  Identities=25%  Similarity=0.434  Sum_probs=81.0

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCccc-CCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKE-NGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~-~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      ++.|+|+|++.+|++++ |.|+|++||.+||++|++.||.+|+ ..+.++++|||||.||+|+|+.+|++|+|..|+   
T Consensus        14 ~~~i~i~v~~l~Gk~~~-~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~---   89 (116)
T d1wgha_          14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK---   89 (116)
T ss_dssp             SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred             CCeEEEEEEEcCCCEEE-EEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCC---
Confidence            46699999999999999 9999999999999999999998873 233347999999999999999999999999874   


Q ss_pred             CeEEEEEEeCCCCchhhh
Q 033465           84 GVTTMHVVVQPPSTEKAE  101 (118)
Q Consensus        84 ~~~tmhlv~~~~~~~~~~  101 (118)
                       +++|||++|...+.+.+
T Consensus        90 -~~~lhlv~r~~~~~p~s  106 (116)
T d1wgha_          90 -TTVMHLVARETLPEPNS  106 (116)
T ss_dssp             -EEEEEEEECSSCSSSCC
T ss_pred             -EEEEEEEeCCCCCCCCc
Confidence             67899999988776654

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.9e-22  Score=129.51  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      |++++.++|+||+.+|+++. +++++++||.+||++|+     +.+++|  +++|||||+||.|+|+.+|++|+|.++  
T Consensus         2 ~~~s~~mqI~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~-----~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~--   71 (87)
T d1wh3a_           2 SSGSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIE-----DQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS--   71 (87)
T ss_dssp             CCCSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHH-----HHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTT--
T ss_pred             CCCCCcEEEEEECCCCCEEE-EEECCcCcHHHHHHHHH-----HHHCcC--hHHeEEEeeceEcCCCCcHHHcCCCCC--
Confidence            57889999999999999998 99999999999999995     457787  599999999999999999999999976  


Q ss_pred             CCCeEEEEEEeCCCCch
Q 033465           82 PGGVTTMHVVVQPPSTE   98 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~   98 (118)
                          .|+||+++..+++
T Consensus        72 ----stl~l~~r~~~gp   84 (87)
T d1wh3a_          72 ----DTLILSKKKGSGP   84 (87)
T ss_dssp             ----EEEEEEECSCCCS
T ss_pred             ----CEEEEEecCCCCC
Confidence                6999999988764

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.7e-21  Score=123.91  Aligned_cols=76  Identities=25%  Similarity=0.380  Sum_probs=69.3

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      .+.|+||+.+|++++ +++++++||++||++|++     .+++|  +++|||||+||.|+|+.+|++|+|.++      +
T Consensus         2 ~M~I~Vk~~~g~t~~-l~v~~~~tV~~lK~~i~~-----~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------s   67 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAK-----RQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------S   67 (78)
T ss_dssp             CEEEEEESSSSSCEE-EEECTTCBHHHHHHHHHH-----HHTCC--GGGEEEEETTEEECTTCBGGGSSCCTT------C
T ss_pred             ceEEEEEcCCCCEEE-EEEcccccHHHHHHHHHH-----HHCcC--hhHeEEEEeeeEcCCCCCHHHcCCCCC------C
Confidence            478999999999999 999999999999999964     46787  599999999999999999999999977      4


Q ss_pred             EEEEEeCCCC
Q 033465           87 TMHVVVQPPS   96 (118)
Q Consensus        87 tmhlv~~~~~   96 (118)
                      |+|+++|+++
T Consensus        68 ti~lv~R~rg   77 (78)
T d2zeqa1          68 IVHIVQRPRR   77 (78)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEEEeccCC
Confidence            8999999876

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=3.3e-21  Score=121.61  Aligned_cols=73  Identities=26%  Similarity=0.363  Sum_probs=66.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      +.|+||+.+|++++ +++++++||++||++|.+     ..++|  +++|||||+||.|+|+.+|++|+|++|      +|
T Consensus         1 M~I~Vk~~~G~~~~-l~V~~~~tV~~lK~~i~~-----~~gi~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------st   66 (73)
T d1bt0a_           1 MLIKVKTLTGKEIE-IDIEPTDTIDRIKERVEE-----KEGIP--PVQQRLIYAGKQLADDKTAKDYNIEGG------SV   66 (73)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HhCCC--hHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence            57899999999999 999999999999999964     45676  599999999999999999999999987      48


Q ss_pred             EEEEeCC
Q 033465           88 MHVVVQP   94 (118)
Q Consensus        88 mhlv~~~   94 (118)
                      +|+++|+
T Consensus        67 i~lvlrL   73 (73)
T d1bt0a_          67 LHLVLAL   73 (73)
T ss_dssp             EEEEECC
T ss_pred             EEEEeeC
Confidence            9999885

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.4e-21  Score=121.09  Aligned_cols=76  Identities=25%  Similarity=0.378  Sum_probs=68.9

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|++++ +++++++||++||++|.+.     .++|  +++|||+|+||.|+|+.+|++|+|+++      ++
T Consensus         1 MqI~Vk~l~G~~~~-l~v~~~~tV~~lK~~I~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~y~i~~~------s~   66 (76)
T d1ogwa_           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST   66 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHhhhhh-----cCCC--hHHEEeEECCeEcCCCCCHHHcCCCCC------CE
Confidence            57999999999999 9999999999999999643     5676  599999999999999999999999987      48


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +||++|+.++
T Consensus        67 I~L~~rlrgG   76 (76)
T d1ogwa_          67 LHLVLRLRGG   76 (76)
T ss_dssp             EEEEECTTCC
T ss_pred             EEEEEecCCC
Confidence            9999998875

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.6e-21  Score=121.77  Aligned_cols=78  Identities=18%  Similarity=0.303  Sum_probs=69.7

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..++|+||+.+|+++. +++++++||++||++|++.     .++|  +++|||||+||.|+|+.+|++|+|+++      
T Consensus         2 ~e~qi~Vk~~~G~~~~-l~V~~~~tV~~lK~~I~~~-----~~ip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------   67 (80)
T d1ttna1           2 YECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------   67 (80)
T ss_dssp             CSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred             CeEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHH-----hCCC--cccEEEEECceEcCCCCcHHHcCCCCC------
Confidence            3689999999999999 9999999999999999644     5677  599999999999999999999999987      


Q ss_pred             EEEEEEeCCCCc
Q 033465           86 TTMHVVVQPPST   97 (118)
Q Consensus        86 ~tmhlv~~~~~~   97 (118)
                      .|+||+++.+.+
T Consensus        68 sti~lvi~~p~~   79 (80)
T d1ttna1          68 YVVQVIVSQPVQ   79 (80)
T ss_dssp             CEEEEECCCSSC
T ss_pred             CEEEEEecCCCC
Confidence            489999887654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=119.98  Aligned_cols=75  Identities=25%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.++|+||+.+|+++. +++++++||++||++|++     ..++|  +++|||||+||.|+|+.+|++|||.+|      
T Consensus         2 ~~~qi~Vk~~~G~~~~-l~v~~~~tV~~lK~~I~~-----~~gi~--~~~qrL~~~gk~L~d~~tL~~y~I~~~------   67 (76)
T d1z2ma2           2 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------   67 (76)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------
T ss_pred             CCEEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHH-----HhcCC--hhHeEEEECCeECCCCCcHHHcCCCCC------
Confidence            5689999999999998 999999999999999964     46777  599999999999999999999999987      


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                      .|+|+++|+
T Consensus        68 sti~l~lRL   76 (76)
T d1z2ma2          68 STVFMNLRL   76 (76)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEeC
Confidence            488999875

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.6e-20  Score=121.87  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             CCCCceeEEEEEeCCCce--eeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSD--IGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~--~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      +++++.|+|+|++.++..  ++ +++++++||++||++|++.|+.   .+|  +++|||||+||+|+|+.+|++|..+.+
T Consensus         2 ssgs~~i~l~Ik~~~~~~~~~~-~~v~~~~TV~~LK~~I~~~~~~---~~~--~~~qrLIy~Gk~L~D~~~L~d~~~~~~   75 (93)
T d1wgda_           2 SSGSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPE---RPR--PEDQRLIYSGKLLLDHQCLRDLLPKQE   75 (93)
T ss_dssp             CCCSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTT---CCC--TTTCEEEETTEECCSSSCHHHHSCSSS
T ss_pred             CCCCCcEEEEEECCCCCceeEE-EEcCCCCcHHHHHHHHHHHcCC---CCC--hHHEEEEECCeEccCCCCHHHhCcccC
Confidence            578889999999987654  76 8889999999999999988642   233  589999999999999999999987654


Q ss_pred             CCCCCeEEEEEEeCCCCch
Q 033465           80 DIPGGVTTMHVVVQPPSTE   98 (118)
Q Consensus        80 ~~p~~~~tmhlv~~~~~~~   98 (118)
                      +    ..+||||+++.+++
T Consensus        76 ~----~~viHLV~~~~~~p   90 (93)
T d1wgda_          76 K----RHVLHLVCNVKSGP   90 (93)
T ss_dssp             C----SEEEEEECCCCCCC
T ss_pred             C----CCEEEEEecCCCCC
Confidence            3    36899999887654

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=119.70  Aligned_cols=79  Identities=27%  Similarity=0.356  Sum_probs=67.3

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|+++. +++++++||.+||++|.+..  +...+|  +++|||||+||.|+|+.+|++|||.++      .+
T Consensus         1 M~I~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~--~~~~i~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------s~   69 (95)
T d1uela_           1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEK--GKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NF   69 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHH--CTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SE
T ss_pred             CEEEEEeCCCCEEE-EEECCCccHHHHHHHHHhhh--cccCCC--ccceEEEECCeEccCCCcHHHcCCCCC------CE
Confidence            57899999999999 99999999999999997652  223455  599999999999999999999999987      47


Q ss_pred             EEEEeCCCCc
Q 033465           88 MHVVVQPPST   97 (118)
Q Consensus        88 mhlv~~~~~~   97 (118)
                      +|++++.+.+
T Consensus        70 i~lv~~~~~~   79 (95)
T d1uela_          70 VVVMVTKPKA   79 (95)
T ss_dssp             EEEEESSCCC
T ss_pred             EEEEECCCCC
Confidence            8888876544

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-20  Score=119.56  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      ++|+||+.+|+++. +++++++||++||++|++     ..++|  +++|||||+||.|+|+.+|++|+|. +      .|
T Consensus         1 m~I~Vk~~~g~~~~-l~V~~~~tV~~lK~~I~~-----~~gip--~~~qrLi~~Gk~L~d~~tL~dy~i~-~------~t   65 (73)
T d1wx9a1           1 LEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAA-----SVSIP--SEKQRLIYQGRVLQDDKKLQEYNVG-G------KV   65 (73)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHCCC--TTTCCCEETTEECCSSSBHHHHTCT-T------EE
T ss_pred             CEEEEEcCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--hHHEEEEECCeEccCCCCHHHhCCC-C------CE
Confidence            57999999999999 999999999999999964     46777  5999999999999999999999995 5      48


Q ss_pred             EEEEeCCC
Q 033465           88 MHVVVQPP   95 (118)
Q Consensus        88 mhlv~~~~   95 (118)
                      +||++|.+
T Consensus        66 i~lv~r~P   73 (73)
T d1wx9a1          66 IHLVERAP   73 (73)
T ss_dssp             EBCCCSSC
T ss_pred             EEEEecCC
Confidence            89998864

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.7e-20  Score=116.41  Aligned_cols=73  Identities=23%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             eEEEEEeCCCc-eeeeee-cCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            8 LEIKFRLTDGS-DIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         8 i~i~~~~~~g~-~~~~~~-v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ++|+||+.+|+ ++. ++ +++++||++||++|+     +.+++|  +++|||||+||.|+|+.+|++|||.++      
T Consensus         1 M~I~Vktl~Gk~t~~-l~~v~~~~tV~~lK~~I~-----~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~~------   66 (76)
T d2faza1           1 MWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQ-----ELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLN------   66 (76)
T ss_dssp             EEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTT------
T ss_pred             CEEEEEeCCCCcEEE-EecCCCCCCHHHHHHHHH-----HHHCcC--hHHeEEEEeeEeccCCCcHHHcCCCCC------
Confidence            57999999996 666 65 899999999999995     446787  599999999999999999999999987      


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                      .|+||++|.
T Consensus        67 sti~lv~r~   75 (76)
T d2faza1          67 DTIQLLVRQ   75 (76)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEEc
Confidence            489999986

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.3e-20  Score=115.98  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      +.|+|+||+.+|++++ +++++++||++||++|.+..  +...+|  +++|||||+||.|+|+.+|++|||++++
T Consensus         1 s~~~i~vk~l~g~~~~-l~v~~~~TV~~lK~~i~~~~--g~~~i~--~~~qrLi~~Gk~L~D~~tL~~y~I~~~s   70 (77)
T d1oqya4           1 SAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEK--GRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN   70 (77)
T ss_dssp             CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHT--CSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS
T ss_pred             CcEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHhc--CCCCCC--hHHEEeEECCcCccCCCcHHHcCCCCCC
Confidence            3588999999999999 99999999999999997652  223455  5999999999999999999999999874

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=115.61  Aligned_cols=73  Identities=26%  Similarity=0.307  Sum_probs=64.2

Q ss_pred             eEEEEEeCCCc-eeeee-ecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            8 LEIKFRLTDGS-DIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         8 i~i~~~~~~g~-~~~~~-~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ++|+||+.+|+ ++. + .+++++||++||++|.+     ..++|  +++|||||+||.|+|+.+|++|||.++      
T Consensus         1 M~I~Vk~l~G~~t~~-~~~v~~~~TV~~lK~~I~~-----~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~------   66 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWA-----LFDVR--PECQRLFYRGKQLENGYTLFDYDVGLN------   66 (76)
T ss_dssp             EEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHH-----HSCCC--TTTEEEEETTEECCSSSBHHHHTCCTT------
T ss_pred             CEEEEEeCCCCceEE-EeccCCCChHHHHHHHHHH-----HHCCC--chhcEEEEEeeEecCCCCHHHcCCCCC------
Confidence            57999999994 666 5 59999999999999954     46787  599999999999999999999999987      


Q ss_pred             EEEEEEeCC
Q 033465           86 TTMHVVVQP   94 (118)
Q Consensus        86 ~tmhlv~~~   94 (118)
                      .++||++|+
T Consensus        67 s~i~lv~rp   75 (76)
T d1wy8a1          67 DIIQLLVRP   75 (76)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEEcc
Confidence            489999986

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.1e-19  Score=117.41  Aligned_cols=81  Identities=21%  Similarity=0.339  Sum_probs=70.3

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC-CCCcccccCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSPLCD   80 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~-D~~tL~~~~i~~~~   80 (118)
                      +++++.|+|+||+.+|+.+. +++++++||++||++|++        .+  +++|||||.||+|. |..+|++|+|.+| 
T Consensus         2 ~~~~s~m~i~vK~l~~~~~~-v~v~~~~TV~~lK~~i~~--------~~--~~~qrLi~~Gk~L~dd~~tL~~y~i~~g-   69 (95)
T d1wiaa_           2 SSGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFP--------GQ--ESQMKLIYQGRLLQDPARTLSSLNITNN-   69 (95)
T ss_dssp             CCCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSS--------ST--TTTCEEEETTEECCCSSCBTTTTTCCTT-
T ss_pred             CCCCCcEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHhc--------CC--cceeEEEECCEEcccCCCCHHHcCCCCC-
Confidence            57889999999999999999 999999999999999942        23  48999999999995 6789999999987 


Q ss_pred             CCCCeEEEEEEeCCCCchh
Q 033465           81 IPGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~~~~~   99 (118)
                           .++|++++.+.+..
T Consensus        70 -----~~v~l~~~~~~~~~   83 (95)
T d1wiaa_          70 -----CVIHCHRSPPGAAV   83 (95)
T ss_dssp             -----EEEEEECCCCCCCC
T ss_pred             -----CEEEEEEcCCCCCC
Confidence                 58899987766544

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.1e-19  Score=112.98  Aligned_cols=72  Identities=19%  Similarity=0.258  Sum_probs=64.8

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeecCCCCcccccCCCCCCCCCCeE
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      +|+||+.+|+++. +++++++||.+||++|+.     ..++|  +++|||||  +||.|+|+.+|++|||.+|      .
T Consensus         2 ~l~Vk~l~G~~~~-v~V~~~~tV~~lK~~I~~-----~~gip--~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g------~   67 (76)
T d1z2ma1           2 DLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQ-----KIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPG------S   67 (76)
T ss_dssp             EEEEEESSSCEEE-EECCSSCCHHHHHHHHHH-----HHCCC--GGGEEEEEETTCCBCCSSSCSGGGTCCTT------C
T ss_pred             EEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HhccC--CccEEEEEcCCCeeccCCCcHHHcCCCCC------C
Confidence            6899999999999 999999999999999964     46777  59999999  7999999999999999987      4


Q ss_pred             EEEEEeCC
Q 033465           87 TMHVVVQP   94 (118)
Q Consensus        87 tmhlv~~~   94 (118)
                      ++||+++.
T Consensus        68 ~i~lv~~~   75 (76)
T d1z2ma1          68 TVLLVVDK   75 (76)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            88988864

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.5e-19  Score=111.79  Aligned_cols=72  Identities=22%  Similarity=0.342  Sum_probs=62.7

Q ss_pred             eeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeE
Q 033465            7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT   86 (118)
Q Consensus         7 ~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~   86 (118)
                      +|+|++++. +.+++ +++++++||++||++|..     ..++|  +++|||||+||.|+|+.+|++|+|.+|      .
T Consensus         1 si~I~Vk~~-~~~~~-i~v~~~~tV~~lK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~~~I~~g------~   65 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWE-VNVAPESTVLQFKEAINK-----ANGIP--VANQRLIYSGKILKDDQTVESYHIQDG------H   65 (73)
T ss_dssp             EEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred             CEEEEEEeC-CeEEE-EEECCCChHHHHHHHHHH-----HHCcC--hHHeEEEECCeEccCCCcHHHCCCCCC------C
Confidence            478888875 55787 999999999999999964     35777  599999999999999999999999987      4


Q ss_pred             EEEEEeC
Q 033465           87 TMHVVVQ   93 (118)
Q Consensus        87 tmhlv~~   93 (118)
                      ++||+.+
T Consensus        66 ~i~lV~~   72 (73)
T d2bwfa1          66 SVHLVKS   72 (73)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEee
Confidence            8899875

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.1e-19  Score=114.00  Aligned_cols=79  Identities=20%  Similarity=0.314  Sum_probs=68.4

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG   83 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~   83 (118)
                      .+.+|+|+|++.++ ++. +++++++||++||++|++     ..++|  +++|||||+||.|+|+.+|++|||.+|    
T Consensus         4 ~~~~i~I~Vkt~~~-~~~-~~V~~~~tV~~lK~~i~~-----~~gi~--~~~qrL~~~Gk~L~D~~tL~~y~i~~g----   70 (84)
T d1yqba1           4 SPHLIKVTVKTPKD-KED-FSVTDTCTIQQLKEEISQ-----RFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG----   70 (84)
T ss_dssp             CTTEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBHHHHTCCTT----
T ss_pred             CCCEEEEEEEcCCC-cEE-EEECCCCcHHHHHHHHHH-----HHCcC--chhEEEEEeeeeccccCcHHHcCCCCC----
Confidence            45579999999766 577 999999999999999964     35776  599999999999999999999999987    


Q ss_pred             CeEEEEEEeCCCCc
Q 033465           84 GVTTMHVVVQPPST   97 (118)
Q Consensus        84 ~~~tmhlv~~~~~~   97 (118)
                        .|+||++|....
T Consensus        71 --sti~lv~r~~~~   82 (84)
T d1yqba1          71 --LTVHLVIKRQHR   82 (84)
T ss_dssp             --CEEEEEECCCCS
T ss_pred             --CEEEEEECCCCC
Confidence              489999988653

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=7.7e-19  Score=110.89  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=63.1

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT   87 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~t   87 (118)
                      |+|.+++..|+++. +++++++||++||++|+++     .++|  +++|||+|+||.|+|+.+|++|||.+|      ++
T Consensus         2 i~i~vk~~~Gk~~~-v~V~~~~tV~~lK~~I~~~-----~~i~--~~~q~Li~~Gk~L~d~~tL~~y~I~~g------st   67 (73)
T d1m94a_           2 IEVVVNDRLGKKVR-VKCLAEDSVGDFKKVLSLQ-----IGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ------TN   67 (73)
T ss_dssp             EEEEEEETTTEEEE-EEECTTSBHHHHHHHHHHH-----HCCT--TTSEEEESSSCEECTTSBHHHHTCCTT------EE
T ss_pred             eEEEEECCCCCEEE-EEECCcCcHHHHHHHHHHh-----hccc--ccEEEEEEEeEEecccCcHHHcCCCCC------CE
Confidence            68999999999999 9999999999999999654     5676  599999999999999999999999987      57


Q ss_pred             EEEE
Q 033465           88 MHVV   91 (118)
Q Consensus        88 mhlv   91 (118)
                      +||.
T Consensus        68 l~L~   71 (73)
T d1m94a_          68 LELY   71 (73)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7774

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=4.5e-19  Score=114.40  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      ..+..|+|+|++.++ .++ +++++++||.+||++|++.     .++|  +++|||+|+||.|+|+.+|++|||.+|   
T Consensus         6 ~~~~~i~v~Vk~~~~-~~~-i~v~~~~tV~~lK~~I~~~-----~~v~--~~~qrL~f~Gk~L~d~~tL~~~gI~~g---   73 (83)
T d1wx8a1           6 PSSRIIRVSVKTPQD-CHE-FFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG---   73 (83)
T ss_dssp             CCSCEEEEEEECSSS-EEE-EEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT---
T ss_pred             CCCCeEEEEEEcCCC-cEE-EEECCCChHHHHHHHHHHH-----hCCC--hhHEEEEEEhhccccCCcHHHcCCCCC---
Confidence            456669999999765 467 9999999999999999754     4566  599999999999999999999999987   


Q ss_pred             CCeEEEEEEeCC
Q 033465           83 GGVTTMHVVVQP   94 (118)
Q Consensus        83 ~~~~tmhlv~~~   94 (118)
                         .++||++|.
T Consensus        74 ---s~I~lv~r~   82 (83)
T d1wx8a1          74 ---STVHVVVRS   82 (83)
T ss_dssp             ---EEEECCBCC
T ss_pred             ---CEEEEEEeC
Confidence               589999885

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=115.55  Aligned_cols=76  Identities=22%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP   82 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p   82 (118)
                      +....|+|+|++.++ .++ ++|++++||.+||++|++.     .++|  +++|||||+||.|+|+.+|++|||.+|   
T Consensus        28 ~~~~~i~V~Vk~~~~-~~~-i~V~~~~tV~~LK~~I~~~-----~gi~--~~~qrLi~~Gk~L~D~~tL~~~~I~~g---   95 (103)
T d1j8ca_          28 AEPKIIKVTVKTPKE-KEE-FAVPENSSVQQFKEAISKR-----FKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDG---   95 (103)
T ss_dssp             CCCCCEEEEEECSSC-EEE-EEECTTCCHHHHHHHHHHH-----HCSC--SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred             CCCCeEEEEEECCCc-cEE-EEECCCChHHHHHHHHHHH-----HCcC--HHHeeeeeeeecccCCCcHHHcCCCCC---
Confidence            445579999999776 567 9999999999999999644     5676  599999999999999999999999987   


Q ss_pred             CCeEEEEEEeC
Q 033465           83 GGVTTMHVVVQ   93 (118)
Q Consensus        83 ~~~~tmhlv~~   93 (118)
                         .+|||++|
T Consensus        96 ---~~I~lvlr  103 (103)
T d1j8ca_          96 ---LTVHLVIK  103 (103)
T ss_dssp             ---EEEEEEEC
T ss_pred             ---CEEEEEEC
Confidence               58999886

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=112.62  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465           15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        15 ~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                      ++|+++. +++++++||++||++|.+     ..++|  +++|||||+||.|+|+.+|++|||.+|      .++||++|.
T Consensus        19 L~G~~~~-l~v~~~~tV~~lK~~I~~-----~~~ip--~~~q~Li~~Gk~L~D~~tL~dY~I~~g------sti~l~~r~   84 (86)
T d1zkha1          19 LNGQVLV-FTLPLTDQVSVIKVKIHE-----ATGMP--AGKQKLQYEGIFIKDSNSLAYYNMANG------AVIHLALKE   84 (86)
T ss_dssp             CSSCEEE-EEECTTSBHHHHHHHHHH-----HTCCC--TTTEEEEETTEEECTTSBHHHHTCCTT------EEEEEEESC
T ss_pred             cCCeEEE-EEECCCChHHHHHHHHHh-----hhcCC--hHHEEEEeCCcCcCCCCCHHHcCCCCC------CEEEEEEec
Confidence            6899998 999999999999999964     45777  599999999999999999999999987      589999997


Q ss_pred             CC
Q 033465           95 PS   96 (118)
Q Consensus        95 ~~   96 (118)
                      +|
T Consensus        85 RG   86 (86)
T d1zkha1          85 RG   86 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.1e-18  Score=115.40  Aligned_cols=73  Identities=12%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      ..|+|.+++..|+++. ++++|++||++||++|+++     .++|  +++|||||+||+|+|..+|++|||++|      
T Consensus        27 ~~i~V~V~~~~Gk~~~-v~V~p~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~dygI~~G------   92 (100)
T d1uh6a_          27 TMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQ-----TGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDG------   92 (100)
T ss_dssp             CEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCSSCBHHHHTCCTT------
T ss_pred             ceEEEEEECCCCCEEE-EEECCcChHHHHHHHHHHH-----HCCC--cceEEEEEEeecccCcCCHHHcCCCCC------
Confidence            4589999999999999 9999999999999999644     5677  599999999999999999999999987      


Q ss_pred             EEEEEEe
Q 033465           86 TTMHVVV   92 (118)
Q Consensus        86 ~tmhlv~   92 (118)
                      +++||..
T Consensus        93 stI~L~~   99 (100)
T d1uh6a_          93 MNLELYY   99 (100)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEEE
Confidence            5888765

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=2.1e-18  Score=117.34  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=67.3

Q ss_pred             ceeEEEEEe---CCCceeeeeecCC-cccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            6 DQLEIKFRL---TDGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         6 ~~i~i~~~~---~~g~~~~~~~v~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      ..+.|+|..   .+|+++. +++++ ++||.+||++|.+     ..++|  +++|||||.||+|+|+.+|++|+|.+|  
T Consensus        26 g~~ti~V~v~~~~~G~~i~-l~v~~~sdtV~~lK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~ynI~~g--   95 (111)
T d1we6a_          26 GPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAG-----EIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG--   95 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHH-----HTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred             CCEEEEEEcccCCCCeEEE-EEecCCccHHHHHHHHHHH-----HHCCC--ccceEEEEeeEEccccCCHHHcCCCCC--
Confidence            344555543   3699998 99987 8999999999964     46777  599999999999999999999999987  


Q ss_pred             CCCeEEEEEEeCCCCchh
Q 033465           82 PGGVTTMHVVVQPPSTEK   99 (118)
Q Consensus        82 p~~~~tmhlv~~~~~~~~   99 (118)
                          .++||++|++++..
T Consensus        96 ----sti~L~lr~rGG~~  109 (111)
T d1we6a_          96 ----EILTLSLRERSGPS  109 (111)
T ss_dssp             ----CEEEEECSSCCSSC
T ss_pred             ----CEEEEEeeCCCCCC
Confidence                48999999999864

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.6e-18  Score=115.51  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceE---------------EEeCCeecC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVK---------------LISAGKILE   66 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~r---------------LI~~Gk~L~   66 (118)
                      +++++.|+|+|++.+|+.+. ++|++++||++||++|+..     .++|  +++||               |||+|+.|.
T Consensus         2 ssgss~M~v~Vk~~~G~~~~-v~V~~~~TV~~LK~~I~~~-----~~ip--~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~   73 (105)
T d1v2ya_           2 SSGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRY-----VQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLT   73 (105)
T ss_dssp             CCCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEEC
T ss_pred             CCCCCcEEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--HHHhcccccccccccccceEEEECCEECc
Confidence            67899999999999999999 9999999999999999643     4555  36666               999999996


Q ss_pred             CC-CcccccCCCCCCCCCCeEEEEEEeCCC
Q 033465           67 NN-RTLGECRSPLCDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        67 D~-~tL~~~~i~~~~~p~~~~tmhlv~~~~   95 (118)
                      |+ .+|++|+|.+|      .++||++++.
T Consensus        74 d~~~tL~~~gI~~g------~~l~lv~r~~   97 (105)
T d1v2ya_          74 EDRKKLRDYGIRNR------DEVSFIKKLG   97 (105)
T ss_dssp             CSSSBHHHHTCCSS------EEEEEEECSC
T ss_pred             ccCCCHHHcCCCCC------CEEEEEEecC
Confidence            65 59999999987      4889998864

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.1e-17  Score=110.68  Aligned_cols=77  Identities=10%  Similarity=0.103  Sum_probs=67.3

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI   81 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~   81 (118)
                      +++++.+.|+||+.+++.+. +++++++||.+||++|++     ..++|  +++|||||.||.|+|+ +|++|||++|+ 
T Consensus         2 ~s~s~~~~I~VK~~~~~~~~-v~v~~~~tV~~lK~~i~~-----~~gvp--~~~QkLi~~Gk~L~d~-tL~~~gi~~g~-   71 (96)
T d1wgga_           2 SSGSSGYSVTVKWGKEKFEG-VELNTDEPPMVFKAQLFA-----LTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM-   71 (96)
T ss_dssp             CSCCCEEEEEEEETTEEEEE-EEEESSSCHHHHHHHHHH-----HTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC-
T ss_pred             CCCCCceEEEEEeCCCCEEE-EEECCCCcHHHHHHHhhh-----hcCcc--ceeeEEeecCcccCCC-cHHHCCCCCCC-
Confidence            57889999999999998887 999999999999999964     46777  5999999999999986 79999999884 


Q ss_pred             CCCeEEEEEEeC
Q 033465           82 PGGVTTMHVVVQ   93 (118)
Q Consensus        82 p~~~~tmhlv~~   93 (118)
                           ++||+..
T Consensus        72 -----~i~lv~t   78 (96)
T d1wgga_          72 -----TVLMMGS   78 (96)
T ss_dssp             -----EEECCCC
T ss_pred             -----EEEEEee
Confidence                 6777644

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2e-17  Score=110.79  Aligned_cols=83  Identities=8%  Similarity=0.079  Sum_probs=69.7

Q ss_pred             CCCCceeEEEE----EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC-CCCcccccCC
Q 033465            2 ASVQDQLEIKF----RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRS   76 (118)
Q Consensus         2 ~~~~~~i~i~~----~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~-D~~tL~~~~i   76 (118)
                      +++.+.+.|+|    +..+|.++. +++++++||.+||++|..     ..++|  +++|||||+||.|. |..+|++|||
T Consensus         2 s~~~~~m~itV~~~~~~~~~~t~~-l~V~~~~tV~~LK~~Ie~-----~~gip--~~~Q~Li~~Gk~L~dd~~tL~~~gI   73 (102)
T d1v5oa_           2 SSGSSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCEL-----ESGVP--AEEAQIVYMEQLLTDDHCSLGSYGL   73 (102)
T ss_dssp             CCCSCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHH-----HTCCC--GGGBCEEETTEEECCSSSBHHHHTC
T ss_pred             CCCcCCEEEEEEecccCCCCCEEE-EEECCcccHHHHHHHHHH-----HhCCC--cceEEEEeCCeEeecccCCHHHcCC
Confidence            46677788888    677899998 999999999999999954     45777  59999999999994 6789999999


Q ss_pred             CCCCCCCCeEEEEEEeCCCCch
Q 033465           77 PLCDIPGGVTTMHVVVQPPSTE   98 (118)
Q Consensus        77 ~~~~~p~~~~tmhlv~~~~~~~   98 (118)
                      .+|      .++||+.+...+.
T Consensus        74 ~~g------~~i~l~~r~~~~~   89 (102)
T d1v5oa_          74 KDG------DMVVLLQKDNVGL   89 (102)
T ss_dssp             CTT------EEEEECBCCCCCC
T ss_pred             CCC------CEEEEEECCCCCC
Confidence            987      4888888766553

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-17  Score=110.39  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCC-CCCeE
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGVT   86 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~-p~~~~   86 (118)
                      |.|+++. .+.++. +++++++||.+||++|+     +.+++|  +++|||||+||.|+|+.||++|||..+.. +..+.
T Consensus         2 ifv~i~~-~k~Ti~-l~v~~~~TV~~lK~~I~-----~~~gip--~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~   72 (103)
T d2c9wb1           2 VFLMIRR-HKTTIF-TDAKESSTVFELKRIVE-----GILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA   72 (103)
T ss_dssp             EEEEEEE-BTEEEE-EEECTTSBHHHHHHHHH-----HHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCE
T ss_pred             EEEEEeC-CCEEEE-EEeCCCCcHHHHHHHHH-----HHhCCC--cccEEEEECCEEcCCCCCHHHcCCCcccccccCCc
Confidence            5566655 333566 99999999999999996     446787  59999999999999999999999976544 45678


Q ss_pred             EEEEEeCCCCchh
Q 033465           87 TMHVVVQPPSTEK   99 (118)
Q Consensus        87 tmhlv~~~~~~~~   99 (118)
                      ++|+++++.+..+
T Consensus        73 ~~~l~~~~~~~~~   85 (103)
T d2c9wb1          73 TVGLAFRADDTFE   85 (103)
T ss_dssp             EEEEEEEETTEEC
T ss_pred             EEEEEEecCCCcc
Confidence            9999998777644

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=111.53  Aligned_cols=80  Identities=15%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             CCCceeEEEE--EeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            3 SVQDQLEIKF--RLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         3 ~~~~~i~i~~--~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      .+.++++|++  +...|+++. +++++++||++||++|++.     .++|  +++|||||+||+|+|+.||++|+|.++ 
T Consensus        13 tg~ati~V~~~~~~~~g~~~~-lev~~~~TV~~LK~~I~~~-----~gi~--~~~qkLi~~Gk~L~d~~tL~~~gI~~~-   83 (100)
T d1wjua_          13 TGIATIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAET-----FGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN-   83 (100)
T ss_dssp             CCEEEEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHH-----TTCC--STTCEEEETTEECCTTSBHHHHTCCSS-
T ss_pred             cceEEEEEEEeeccCCCeEEE-EEECCCcHHHHHHHHHHHH-----HCCC--CeeEEEEEcccCcCCCcCHHHcCCCCC-
Confidence            4566788877  557899998 9999999999999999654     5666  599999999999999999999999987 


Q ss_pred             CCCCeEEEEEEeCCCC
Q 033465           81 IPGGVTTMHVVVQPPS   96 (118)
Q Consensus        81 ~p~~~~tmhlv~~~~~   96 (118)
                           .++|++.....
T Consensus        84 -----s~i~vi~~~~~   94 (100)
T d1wjua_          84 -----VKAMVLELKQS   94 (100)
T ss_dssp             -----EEEEEECCCCC
T ss_pred             -----CEEEEEEcCCC
Confidence                 46666655443

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.3e-16  Score=105.66  Aligned_cols=59  Identities=22%  Similarity=0.297  Sum_probs=50.9

Q ss_pred             CCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCeEEEEEEeCC
Q 033465           26 PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQP   94 (118)
Q Consensus        26 ~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~~tmhlv~~~   94 (118)
                      +.+.||.+||++|.+.||+   ..|. +++|||||+||.|+|+.+|++|+|.+|      .|+||+.|.
T Consensus        35 ~~~~tV~~lK~~i~~~~~~---~~P~-p~~~rLIy~Gk~L~D~~tL~~y~I~~g------stihLV~r~   93 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQE---SVPD-PELIDLIYCGRKLKDDQTLDFYGIQPG------STVHVLRKS   93 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTT---TCCC-SSSEEEEETTEECCTTCBHHHHTCCTT------CEEEEEESS
T ss_pred             CCccCHHHHHHHHHHHccc---CCCC-hhheEEEECCeEECCCccHHHcCCCCC------CEEEEEEeC
Confidence            3477999999999998863   3443 699999999999999999999999987      499999885

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.1e-16  Score=102.14  Aligned_cols=82  Identities=21%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE---eCCeecCCCCcccccCCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSPL   78 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI---~~Gk~L~D~~tL~~~~i~~   78 (118)
                      +|+++.|.|+|+. .|++++.+++++++||.+||++|++.     .++|  +++||||   |.||.|+|+.+|++|+|.+
T Consensus         2 ~s~s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~-----t~vp--~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~   73 (90)
T d1v5ta_           2 SSGSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKP   73 (90)
T ss_dssp             CCCCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCT
T ss_pred             CCCCCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHH-----HcCC--HHHhhhhhhccCCcCCCCcCcHHHcCCCC
Confidence            5788899999997 56666623799999999999999644     5676  5999999   5899999999999999998


Q ss_pred             CCCCCCeEEEEEEeCCCCc
Q 033465           79 CDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        79 ~~~p~~~~tmhlv~~~~~~   97 (118)
                      |      .+|||+..+..+
T Consensus        74 g------~~i~lv~s~~~~   86 (90)
T d1v5ta_          74 N------TKIMMMGTRESG   86 (90)
T ss_dssp             T------EEEEEECCCSSS
T ss_pred             C------CEEEEEeeCCCC
Confidence            7      588888776544

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.5e-16  Score=103.83  Aligned_cols=77  Identities=18%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      .+.|+|+|++ ++++++ +++++++||++||++|++     ..++|  +++|||||+|+ |+|+.+|++|+|.++     
T Consensus        15 ~~~i~v~V~~-~~k~~~-i~v~~~~TV~~LK~~I~~-----~tgvp--~~~q~Li~~g~-l~D~~tL~~~~I~~g-----   79 (95)
T d1v86a_          15 KELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHS-----ITGLP--PAMQKVMYKGL-VPEDKTLREIKVTSG-----   79 (95)
T ss_dssp             CCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHH-----HHCSC--STTCCCBSSSB-CCSSSBHHHHCCCTT-----
T ss_pred             ccEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHH-----HhCCC--hhHEEEEeccc-ccCCCcHHHCCCCCC-----
Confidence            3468899885 888898 999999999999999964     46777  59999999997 899999999999987     


Q ss_pred             eEEEEEEeCCCCc
Q 033465           85 VTTMHVVVQPPST   97 (118)
Q Consensus        85 ~~tmhlv~~~~~~   97 (118)
                       .++||+.+...+
T Consensus        80 -s~i~lvgs~~~g   91 (95)
T d1v86a_          80 -AKIMVVGSTISG   91 (95)
T ss_dssp             -EEEEECCSSCCC
T ss_pred             -CEEEEEecCCCC
Confidence             588988776554

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=7.2e-15  Score=96.87  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             CCCCceeEEEEEeC-CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-------ecCCCCcccc
Q 033465            2 ASVQDQLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-------ILENNRTLGE   73 (118)
Q Consensus         2 ~~~~~~i~i~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-------~L~D~~tL~~   73 (118)
                      +++++.|.|.|+.. ++...+ ..|++++||.+||++|+.     ..++|  +++|||+|.|+       +++|+.+|++
T Consensus         2 ~sgss~v~v~I~s~~~~~~~E-~r~~~~~TV~~LK~kle~-----~tGip--~~~qrL~~~~~~~~~~~~l~~d~~~L~~   73 (95)
T d1v6ea_           2 SSGSSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLEL-----VVGSP--ASCMELELYGADDKFYSKLDQEDALLGS   73 (95)
T ss_dssp             CSCCCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHH-----HTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTS
T ss_pred             CCCCCcEEEEEEECCCCcEEE-EEeCCCCCHHHHHHHHHH-----HhCcC--chhEEEEEeCCCCceeecccCCcCCHHH
Confidence            57889999999984 666677 899999999999999953     46777  59999999998       6899999999


Q ss_pred             cCCCCCCCCCCeEEEEEEeCCCCc
Q 033465           74 CRSPLCDIPGGVTTMHVVVQPPST   97 (118)
Q Consensus        74 ~~i~~~~~p~~~~tmhlv~~~~~~   97 (118)
                      |++.+|.      +|||+.+.+.+
T Consensus        74 y~i~dg~------~ihlvd~~p~~   91 (95)
T d1v6ea_          74 YPVDDGC------RIHVIDHSGSG   91 (95)
T ss_dssp             SSCCTTC------EEEEBCCSCCS
T ss_pred             CCCCCCC------EEEEEeCCCCC
Confidence            9999884      89999887654

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=91.63  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             eEEEEEeCCCceeeeeec-----CCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecC-CCCcccccCCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSF-----PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE-NNRTLGECRSPLCDI   81 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v-----~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~-D~~tL~~~~i~~~~~   81 (118)
                      |.|+++. .+..++ +++     ++++||++||++|.+     ..++|  +++|||||.|+.|. |+.+|++|||++|  
T Consensus         2 i~i~V~~-~~~~~~-i~v~~~~~~~~~Tv~~LK~~I~~-----~tgvp--~~~QkL~~~G~~L~~d~~tL~~~gi~~g--   70 (81)
T d1wxva1           2 LTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEE-----VIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDG--   70 (81)
T ss_dssp             EEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHH-----HTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSS--
T ss_pred             EEEEEEE-CCeeEE-EEEecCCCCCccHHHHHHHHHHH-----HHCcC--HHHEEeeecCeEeCcCCCChHHCCCCCC--
Confidence            5677744 566666 777     578999999999964     46777  59999999999995 6789999999987  


Q ss_pred             CCCeEEEEEEeCC
Q 033465           82 PGGVTTMHVVVQP   94 (118)
Q Consensus        82 p~~~~tmhlv~~~   94 (118)
                          .+++|+.+.
T Consensus        71 ----~~i~lv~~~   79 (81)
T d1wxva1          71 ----CRVMLIGKK   79 (81)
T ss_dssp             ----EEEEEESCC
T ss_pred             ----CEEEEEEec
Confidence                588888765

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.50  E-value=3e-14  Score=90.45  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG   84 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~   84 (118)
                      +..|+|+++. +|..+. +.+.+++++..||+.+.++     .++|  ++++||+|.|+.|+|++|+++|+|.+|+    
T Consensus         2 ~~~I~ikv~~-~~~~~~-f~v~~~~~~~~l~~~~~~~-----~~i~--~~~~~l~f~G~~l~~~~T~~~~~i~dgd----   68 (79)
T d1euvb_           2 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKR-----QGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND----   68 (79)
T ss_dssp             CSEEEEEEES-SSCEEE-EEEETTSCTHHHHHHHHHH-----TTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CcEEEEEECC-CCeEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hHhEEEEECCEEeCCCCCHHHCCCCCCC----
Confidence            3458888875 788887 9999999999999999654     4565  5899999999999999999999999884    


Q ss_pred             eEEEEEEeCCCCc
Q 033465           85 VTTMHVVVQPPST   97 (118)
Q Consensus        85 ~~tmhlv~~~~~~   97 (118)
                        ++|++++..||
T Consensus        69 --~I~v~~~q~GG   79 (79)
T d1euvb_          69 --IIEAHREQIGG   79 (79)
T ss_dssp             --EEEEEECCBCC
T ss_pred             --EEEEEEeccCC
Confidence              89999998775

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.4e-13  Score=83.57  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCCCCCCe
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV   85 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~~p~~~   85 (118)
                      +.|.|+++..+|+.+. +.+.+++++..|++.+.++     .++|  ++++||+|.|+.|.++.|++++++.+||     
T Consensus         1 e~I~ikv~~~dg~~v~-f~v~~~t~l~kl~~~y~~~-----~~~~--~~~~~f~fdG~~l~~~~T~~~l~~edgD-----   67 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED-----   67 (77)
T ss_dssp             CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTCCHHHHTCCTTE-----
T ss_pred             CEEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence            4689999999999998 9999999999999999654     4555  5999999999999999999999999985     


Q ss_pred             EEEEEEeCCCC
Q 033465           86 TTMHVVVQPPS   96 (118)
Q Consensus        86 ~tmhlv~~~~~   96 (118)
                       +++++++..|
T Consensus        68 -~Idv~~~q~G   77 (77)
T d2uyzb1          68 -VIEVYQEQTG   77 (77)
T ss_dssp             -EEEEEECCCC
T ss_pred             -EEEEEEecCC
Confidence             8888887543

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.7e-12  Score=84.39  Aligned_cols=70  Identities=19%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCCceeEEEEEeC---CCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCee-------c-CCCCcc
Q 033465            3 SVQDQLEIKFRLT---DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-------L-ENNRTL   71 (118)
Q Consensus         3 ~~~~~i~i~~~~~---~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~-------L-~D~~tL   71 (118)
                      +..+-|.|+|+..   +++.++ +.+++++||.+||.+|+.     ..++|  +++|||+|.|+.       | +|.++|
T Consensus         5 ss~~~iti~i~~~~~~~~~~~~-~kv~~~~TV~~LK~~i~~-----~~gip--~~~qrL~y~~~~~~~~~~~l~~d~~tL   76 (97)
T d1wjna_           5 SSGQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSR-----LLKVP--VSELLLSYESSKMPGREIELENDLQPL   76 (97)
T ss_dssp             SSSCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHT-----TTTCC--TTTCEEEEECTTSCSCEEECCCSSSBS
T ss_pred             cCCCeEEEEEEeCCCCCCceEE-EEcCCCCCHHHHHHHHHH-----HHCcC--hHHeEEEecCCCCCcccceecCCCcCH
Confidence            4445688888863   477788 999999999999999953     45787  499999999983       4 488999


Q ss_pred             cccCCCCCC
Q 033465           72 GECRSPLCD   80 (118)
Q Consensus        72 ~~~~i~~~~   80 (118)
                      .+|+|.+|+
T Consensus        77 ~~YgI~dg~   85 (97)
T d1wjna_          77 QFYSVENGD   85 (97)
T ss_dssp             GGGTCCTTC
T ss_pred             hhccCCCCC
Confidence            999999885

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=3.9e-11  Score=77.73  Aligned_cols=76  Identities=13%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             ceeEEEEEe-CCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCe-------ecCCCCcccccCCC
Q 033465            6 DQLEIKFRL-TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-------ILENNRTLGECRSP   77 (118)
Q Consensus         6 ~~i~i~~~~-~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk-------~L~D~~tL~~~~i~   77 (118)
                      +-+.|++.+ .++..++ ..|++++||.+||++|...     .++|  ++.|||+|.|+       .++|..+|.+||+.
T Consensus         3 ~~~~l~it~~~t~~~~E-~r~~~~~TV~~LK~kle~~-----~Gip--~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~   74 (90)
T d1t0ya_           3 EVYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELV-----VGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR   74 (90)
T ss_dssp             CEEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHH-----HCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC
T ss_pred             cEEEEEEEECCCccEEE-EecCCCCCHHHHHHHHHHH-----HCCC--hhheEEEEeCCCCCcccccccCCCCHHHCCCC
Confidence            346677766 3455566 8899999999999999644     5677  59999999998       56799999999999


Q ss_pred             CCCCCCCeEEEEEEeCCC
Q 033465           78 LCDIPGGVTTMHVVVQPP   95 (118)
Q Consensus        78 ~~~~p~~~~tmhlv~~~~   95 (118)
                      +|      .++||+-...
T Consensus        75 dG------~~Ihvvd~~~   86 (90)
T d1t0ya_          75 DG------YRIHAVDVTG   86 (90)
T ss_dssp             SS------EEEEEEECTT
T ss_pred             CC------CEEEEEeCCC
Confidence            87      5889876543

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.2e-07  Score=56.46  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             eEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCCC
Q 033465            8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD   80 (118)
Q Consensus         8 i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~~   80 (118)
                      |.|+++..+|+.+. +.+..+++...|.+...++     .+.+  ++.+||+|.|+.|..++|.+++++.+||
T Consensus         2 I~lkv~~~~g~~v~-f~vk~~t~l~kl~~~y~~~-----~~~~--~~~~~f~fdG~~i~~~~Tp~~l~med~D   66 (72)
T d1wm3a_           2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCER-----QGLS--MRQIRFRFDGQPINETDTPAQLEMEDED   66 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHH-----HTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE
T ss_pred             EEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHH-----hCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC
Confidence            67888888999998 9999999999999998754     3444  5899999999999999999999999986

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.00012  Score=46.30  Aligned_cols=69  Identities=12%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCC--eec--CCCCcccccCCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KIL--ENNRTLGECRSP   77 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~G--k~L--~D~~tL~~~~i~   77 (118)
                      +++++.+.|.||+.+|+++. ..|..++||.+|.+.|.....        .....+|+...  +.|  +++.||.++|+.
T Consensus        11 ~~~~~~~~i~iRlPdG~r~~-r~F~~~dtl~~l~~fv~~~~~--------~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~   81 (96)
T d2cr5a1          11 ETAEEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKVGY--------HKSLYRLSTSFPRRALEVEGGSSLEDIGIT   81 (96)
T ss_dssp             SSCSSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHHTC--------CTTTEEEECSSSCCBCCCCSSCBHHHHTCS
T ss_pred             CCCCCeEEEEEECCCCCEEE-EEECCcccHHHHHHHHHHhcc--------CcccceeecCCCceecCccCCCcHHHCCCC
Confidence            45677899999999999998 999999999999999976521        12456666544  555  346799999998


Q ss_pred             CC
Q 033465           78 LC   79 (118)
Q Consensus        78 ~~   79 (118)
                      ..
T Consensus        82 p~   83 (96)
T d2cr5a1          82 VD   83 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.74  E-value=1.6e-05  Score=51.40  Aligned_cols=62  Identities=18%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             EEEEEeCCCceeeeeecC-CcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe-------------CCe-ec-CCCCccc
Q 033465            9 EIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-------------AGK-IL-ENNRTLG   72 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~-------------~Gk-~L-~D~~tL~   72 (118)
                      -|++|.-+|...  +++| ++.||.+||++|+++.     ++|  .+.|+|--             .+- -| +|..+|+
T Consensus         2 iiRiRsrdG~eR--v~v~~~~~Tl~~LK~~Ie~~L-----~VP--v~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~   72 (94)
T d1wf9a1           2 MLRVRSRDGLER--VSVDGPHITVSQLKTLIQDQL-----QIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRIS   72 (94)
T ss_dssp             EEEEECSSCEEE--EEECCTTSBHHHHHHHHHHHS-----CCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred             eEEEEecCCceE--EEecCCCCcHHHHHHHHHHHh-----CCC--cccceeecChhhhccCCccccchhhhccCCccCHH
Confidence            378899999665  7886 4789999999997653     566  47888822             122 34 4666899


Q ss_pred             ccCCCCC
Q 033465           73 ECRSPLC   79 (118)
Q Consensus        73 ~~~i~~~   79 (118)
                      ++||..|
T Consensus        73 sl~i~hG   79 (94)
T d1wf9a1          73 SLNLAHG   79 (94)
T ss_dssp             GTCCCTT
T ss_pred             HcCccCc
Confidence            9999987

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=0.00016  Score=45.53  Aligned_cols=69  Identities=20%  Similarity=0.343  Sum_probs=54.9

Q ss_pred             CCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeC--Ceec-CCCCcccccCCCC
Q 033465            3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GKIL-ENNRTLGECRSPL   78 (118)
Q Consensus         3 ~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~--Gk~L-~D~~tL~~~~i~~   78 (118)
                      .+++...|.||+.+|.++. ..|.+++||.+|.+.|....+.    .+  .....|+..  -|.| +++.||.++|+..
T Consensus        10 e~~p~t~I~iRlPdG~~~~-~~F~~~~tl~dv~~~v~~~~~~----~~--~~~f~L~t~~Prr~l~d~~~TL~e~gL~~   81 (89)
T d1i42a_          10 EAEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA----MA--ATSFVLMTTFPNKELADENQTLKEANLLN   81 (89)
T ss_dssp             TTSCCEEEEEEETTTCCEE-EEECSSSCGGGHHHHHHHHCTT----TS--SCCEEEEETTTTEECCCCSSCSGGGTTCC
T ss_pred             CCCCcEEEEEEcCCCCEEE-EEECCchhHHHHHHHHHHhCcc----CC--CCCEEEecCCCCcccCCCcCcHHHCCCcC
Confidence            3567789999999999998 9999999999999999765331    11  356888876  4566 5677999999984

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00026  Score=43.65  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             CCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEE--eCCeec---CCCCcccccCCCC
Q 033465            4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSPL   78 (118)
Q Consensus         4 ~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI--~~Gk~L---~D~~tL~~~~i~~   78 (118)
                      .++...|.||+.+|.++. -.|.+++||.+|.+.|...      +.+  .....|+  |-.|.|   +++.||.++|+..
T Consensus         2 ~e~~~~i~iRlPdG~~~~-~~F~~~~tl~~v~~~v~~~------~~~--~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p   72 (82)
T d1h8ca_           2 AEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK------GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP   72 (82)
T ss_dssp             CCCCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH------TCC--SSSEEEEETTTTEETTTCCTTSBHHHHCCCS
T ss_pred             CCCcEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHhc------CCC--CCceEEEecCcccccccccccCCHHHCCCCC
Confidence            356678999999999998 9999999999999999753      111  2344554  566677   3567999999974

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0006  Score=45.21  Aligned_cols=69  Identities=19%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             CCCCceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEe--CCeec---CCCCcccccCC
Q 033465            2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKIL---ENNRTLGECRS   76 (118)
Q Consensus         2 ~~~~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~--~Gk~L---~D~~tL~~~~i   76 (118)
                      ..+.+..+|.||+.+|.++. ..|..++||.+|.+.|...     . .+  ....+|+.  -=|.|   +.+.||.++||
T Consensus        38 d~~~p~~~l~iRlPdG~r~~-r~F~~~~tl~~l~~~v~~~-----~-~~--~~~~~L~~~fPr~~l~~~d~~~TL~e~gL  108 (124)
T d1wj4a_          38 DVNGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-----G-YP--NERFELLTNFPRRKLSHLDYDITLQEAGL  108 (124)
T ss_dssp             CCSSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-----H-CC--TTTEEEECSSSCCEETSSCSSSCTTTTTC
T ss_pred             CCCCCceEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-----c-cC--CcceEEeecccccccccccccCcHHHcCC
Confidence            35666799999999999998 9999999999999999653     1 11  24555554  44466   34679999999


Q ss_pred             CCC
Q 033465           77 PLC   79 (118)
Q Consensus        77 ~~~   79 (118)
                      ...
T Consensus       109 ~P~  111 (124)
T d1wj4a_         109 CPQ  111 (124)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            743

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.71  E-value=0.029  Score=33.91  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             eeEEEEEeC------CCc-eeeeeecCCcccHHHHHHHhhhhCCCcccCC----CCCCCceEEEeCCeecCCCCcccccC
Q 033465            7 QLEIKFRLT------DGS-DIGPKSFPAATSVATLKESVLSQWPKEKENG----PRTVKDVKLISAGKILENNRTLGECR   75 (118)
Q Consensus         7 ~i~i~~~~~------~g~-~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~----p~~~~~~rLI~~Gk~L~D~~tL~~~~   75 (118)
                      +|+|++++.      .|. ..+ +++++..||.+|.+.+.+++|.-....    -.....+++.-+|+..+++.     .
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~-~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~-----~   74 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE-----E   74 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC-----B
T ss_pred             CeEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCc-----C
Confidence            367777763      243 444 889999999999999999887643311    00135788888999887654     4


Q ss_pred             CCCCC
Q 033465           76 SPLCD   80 (118)
Q Consensus        76 i~~~~   80 (118)
                      +.+||
T Consensus        75 L~~gD   79 (88)
T d1vjka_          75 LKDGD   79 (88)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            56665

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.15  Score=30.92  Aligned_cols=63  Identities=10%  Similarity=0.054  Sum_probs=53.1

Q ss_pred             EEEEEeCCCceeeeeecCCcccHHHHHHHhhhhCCCcccCCCCCCCceEEEeCCeecCCCCcccccCCCCC
Q 033465            9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC   79 (118)
Q Consensus         9 ~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~~rLI~~Gk~L~D~~tL~~~~i~~~   79 (118)
                      .+.+...+|++.. +.+.|++++.++=+..-++     .+.  ++++-.|-|++|.|+=+..+.-.|++.|
T Consensus         2 ~V~Vl~~~~rR~~-VKvtP~t~l~~VL~eaC~k-----~~~--~~~~~~Lkh~~k~ldLsl~~R~sgLpnn   64 (76)
T d2al3a1           2 AVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRR-----QDF--NPSEYDLKFQRTVLDLSLQWRFANLPNN   64 (76)
T ss_dssp             CEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHH-----TTC--CGGGCEEEETTEEESSSCBHHHHCCCSS
T ss_pred             cEEEECCCCcEEE-EEeCCCcCHHHHHHHHHHH-----hCC--ChhHceeeeCCEEcCccceeeecCCCCC
Confidence            3678889999999 9999999999988777654     233  3578899999999999999999999976

>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.87  E-value=0.076  Score=29.87  Aligned_cols=33  Identities=18%  Similarity=0.425  Sum_probs=11.1

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHh
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESV   38 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I   38 (118)
                      +++..|.+|+.+|.++. ..|+.+-||++|+..|
T Consensus        17 ~PtT~iQiRL~dG~R~v-~rFN~~Htv~dir~fI   49 (50)
T d1s3si_          17 EPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFI   49 (50)
T ss_dssp             ----------------------CCCCHHHHHHHC
T ss_pred             CCceEEEEEeCCCCEEE-EEccCccCHHHHHHhh
Confidence            45678999999999998 9999999999999876

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.21  E-value=1.6  Score=26.07  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             CceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhhC
Q 033465            5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQW   42 (118)
Q Consensus         5 ~~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~w   42 (118)
                      ...|+||+.. ++..+. +.++++.+..+|+++|.+..
T Consensus        10 ~~~ikVKv~~-~~D~~~-~~l~~~it~~dL~~kI~~rf   45 (85)
T d1ip9a_          10 LKTTKIKFYY-KDDIFA-LMLKGDTTYKELRSKIAPRI   45 (85)
T ss_dssp             CCCEEEEECB-TTCCEE-EEECSCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEE-CCcEEE-EEeCCCCCHHHHHHHHHHHh
Confidence            3446666655 444555 89999999999999998764

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=1.4  Score=27.02  Aligned_cols=35  Identities=14%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             ceeEEEEEeCCCceeeeeecCCcccHHHHHHHhhhh
Q 033465            6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ   41 (118)
Q Consensus         6 ~~i~i~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~   41 (118)
                      ...-|+|-+-+|.+.. +.|++++|+.+|-+.+.++
T Consensus         8 ~~~vvkv~~~dg~~k~-l~V~~~tTa~eV~~~l~~K   42 (100)
T d1wgra_           8 RPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQR   42 (100)
T ss_dssp             SCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCS
T ss_pred             CceEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHH
Confidence            3477888889999998 9999999999999999764