Citrus Sinensis ID: 033489

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEccccccccccEEEEEEccccccEEEEEEEEEEEccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccEEEEEccccccccccccEEEEEccccccEEcEEEEEEEccccccEEHEEEEEEEEEHHEEEEEcccccc
Coil and Loop (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSgsmepgfkrgDILFLhmskdpirageivvfnvdgreipiVHRVIKVNILLTLFFELTIQPCCL
Flexible Loop (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Low Complexity Region (SEG)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Disordered region (IsUnstruct)
***IGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCC*
Disordered Region (DISOPRED)
*****ESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Disordered Region (DISEMBL)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Disordered Region (DISPRO)
*GWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQPCCL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q5R9C7	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
P67812	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
P67811	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
P67810	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
P42667	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
Q9R0P6	179	Signal peptidase complex	yes	no	0.805	0.530	0.625	2e-29
Q5RC30	192	Signal peptidase complex	no	no	0.788	0.484	0.648	4e-29
Q9BY50	192	Signal peptidase complex	no	no	0.788	0.484	0.648	4e-29
Q9D8V7	192	Signal peptidase complex	no	no	0.788	0.484	0.638	9e-29
P13679	192	Signal peptidase complex	no	no	0.788	0.484	0.638	9e-29

>sp|Q5R9C7|SC11A_PONAB Signal peptidase complex catalytic subunit SEC11A OS=Pongo abelii GN=SEC11A PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9

>sp|P67812|SC11A_HUMAN Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens GN=SEC11A PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67811|SC11A_CANFA Signal peptidase complex catalytic subunit SEC11A OS=Canis familiaris GN=SEC11A PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67810|SC11A_BOVIN Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus GN=SEC11A PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P42667|SC11A_RAT Signal peptidase complex catalytic subunit SEC11A OS=Rattus norvegicus GN=Sec11a PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMLITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9R0P6|SC11A_MOUSE Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus GN=Sec11a PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%), Gaps = 1/96 (1%)

Query: 8   IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
           ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct: 7   LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query: 68  LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct: 67  LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q5RC30|SC11C_PONAB Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            +K +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKV+
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVH 114

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            +K +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKV+
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVH 114

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9D8V7|SC11C_MOUSE Signal peptidase complex catalytic subunit SEC11C OS=Mus musculus GN=Sec11c PE=2 SV=3

 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKV+
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVH 114

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P13679|SC11C_CANFA Signal peptidase complex catalytic subunit SEC11C OS=Canis familiaris GN=SEC11C PE=1 SV=3

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 10  SIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILF 69
            ++ +  RQ+  Q ++  MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LF
Sbjct: 21  DLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLF 80

Query: 70  L-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           L +  +DPIRAGEIVVF V+GR+IPIVHRVIKV+
Sbjct: 81  LTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVH 114

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
356561967	180	PREDICTED: signal peptidase complex cata	0.864	0.566	0.960	5e-49
449468994	180	PREDICTED: signal peptidase complex cata	0.864	0.566	0.941	5e-48
363808256	180	uncharacterized protein LOC100807064 [Gl	0.864	0.566	0.931	5e-48
225443007	180	PREDICTED: signal peptidase complex cata	0.864	0.566	0.931	5e-48
255637768	180	unknown [Glycine max]	0.864	0.566	0.931	7e-48
317106733	180	JHL06P13.9 [Jatropha curcas]	0.864	0.566	0.921	1e-47
224070829	180	predicted protein [Populus trichocarpa]	0.864	0.566	0.911	1e-47
255553143	180	Microsomal signal peptidase 18 kDa subun	0.864	0.566	0.921	1e-47
224054124	180	predicted protein [Populus trichocarpa]	0.864	0.566	0.911	3e-47
15219044	180	signal peptidase, endoplasmic reticulum-	0.864	0.566	0.892	6e-47

>gi|356561967|ref|XP_003549247.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Glycine max]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/102 (96%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGES++SIKSLQIRQVLTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGESVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468994|ref|XP_004152206.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus] gi|449484166|ref|XP_004156804.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/102 (94%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSLQIRQVL+Q VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETMDSIKSLQIRQVLSQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808256|ref|NP_001242493.1| uncharacterized protein LOC100807064 [Glycine max] gi|255635143|gb|ACU17928.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSL+IRQVLTQ VSLGMIVTSALIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSLRIRQVLTQAVSLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443007|ref|XP_002269449.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C [Vitis vinifera] gi|297743433|emb|CBI36300.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKS+QIRQVL+Q VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQVLSQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637768|gb|ACU19206.1| unknown [Glycine max]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 100/102 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKSLQIRQVLTQ VSLGMIVTS LIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSLQIRQVLTQAVSLGMIVTSVLIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106733|dbj|BAJ53229.1| JHL06P13.9 [Jatropha curcas]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/102 (92%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDNVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070829|ref|XP_002303254.1| predicted protein [Populus trichocarpa] gi|222840686|gb|EEE78233.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 101/102 (99%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++S+KS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDTVDSVKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553143|ref|XP_002517614.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis] gi|223543246|gb|EEF44778.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis]

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/102 (92%), Positives = 100/102 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIR GEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVH 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054124|ref|XP_002298104.1| predicted protein [Populus trichocarpa] gi|222845362|gb|EEE82909.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 100/102 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIG++++SIKS+QIRQ+LTQ VSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGDTVDSIKSIQIRQLLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIR GEIVVFNVDGREIPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVH 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219044|ref|NP_175669.1| signal peptidase, endoplasmic reticulum-type [Arabidopsis thaliana] gi|297847646|ref|XP_002891704.1| hypothetical protein ARALYDRAFT_474386 [Arabidopsis lyrata subsp. lyrata] gi|5903045|gb|AAD55604.1|AC008016_14 Similar to gb|AF108945 signal peptidase 18 kDa subunit from Homo sapiens. ESTs gb|H76629, gb|H76949 and gb|H76216 come from this gene [Arabidopsis thaliana] gi|17381152|gb|AAL36388.1| putative signal peptidase subunit [Arabidopsis thaliana] gi|20465737|gb|AAM20337.1| putative signal peptidase subunit [Arabidopsis thaliana] gi|21536563|gb|AAM60895.1| signal peptidase subunit, putative [Arabidopsis thaliana] gi|297337546|gb|EFH67963.1| hypothetical protein ARALYDRAFT_474386 [Arabidopsis lyrata subsp. lyrata] gi|332194707|gb|AEE32828.1| signal peptidase, endoplasmic reticulum-type [Arabidopsis thaliana]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 100/102 (98%)

Query: 1   MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           MGWIGE+++SIKS+QIRQ+ TQ +SLGMIVTSALIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
           GFKRGDILFLHMSKDPIRAGEIVVFNVDGR+IPIVHRVIKV+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVH 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2035139	180	AT1G52600 [Arabidopsis thalian	0.864	0.566	0.892	1.6e-45
TAIR|locus:2093202	180	AT3G15710 [Arabidopsis thalian	0.864	0.566	0.803	6.8e-40
UNIPROTKB|P67810	179	SEC11A "Signal peptidase compl	0.805	0.530	0.625	6.4e-28
UNIPROTKB|P67811	179	SEC11A "Signal peptidase compl	0.805	0.530	0.625	6.4e-28
UNIPROTKB|H0YK72	164	SEC11A "Signal peptidase compl	0.805	0.579	0.625	6.4e-28
UNIPROTKB|H0YK83	185	SEC11A "Signal peptidase compl	0.805	0.513	0.625	6.4e-28
UNIPROTKB|H0YNA5	135	SEC11A "Signal peptidase compl	0.805	0.703	0.625	6.4e-28
UNIPROTKB|H0YNG3	163	SEC11A "Signal peptidase compl	0.805	0.582	0.625	6.4e-28
UNIPROTKB|P67812	179	SEC11A "Signal peptidase compl	0.805	0.530	0.625	6.4e-28
MGI|MGI:1929464	179	Sec11a "SEC11 homolog A (S. ce	0.805	0.530	0.625	6.4e-28

TAIR|locus:2035139 AT1G52600 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 91/102 (89%), Positives = 100/102 (98%)

Query:     1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
             MGWIGE+++SIKS+QIRQ+ TQ +SLGMIVTSALIIWKALMC+TGSESPVVVVLSGSMEP
Sbjct:     1 MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             GFKRGDILFLHMSKDPIRAGEIVVFNVDGR+IPIVHRVIKV+
Sbjct:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2093202 AT3G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/102 (80%), Positives = 97/102 (95%)

Query:     1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
             MG+IGE+++SIKS++IRQVLTQ ++LGMIVTSALIIWKAL+C+TGSESPVVVVLS SMEP
Sbjct:     1 MGFIGETVDSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEP 60

Query:    61 GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             GF+RGDILFL M+ +PIRAGEIVVF+VDGREIPIVHR IKV+
Sbjct:    61 GFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAIKVH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P67810 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Bos taurus (taxid:9913)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P67811 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|H0YK72 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YK83 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YNA5 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     3 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 62

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    63 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 98

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YNG3 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P67812 SEC11A "Signal peptidase complex catalytic subunit SEC11A" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

MGI|MGI:1929464 Sec11a "SEC11 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:     8 IESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDI 67
             ++ ++ +  RQ+  Q ++ GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+
Sbjct:     7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDL 66

Query:    68 LFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102
             LFL +  +DPIR GEIVVF ++GREIPIVHRV+K++
Sbjct:    67 LFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIH 102

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000365001	SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (180 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037864001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)				•		•	•		0.613
	GSVIVG00022861001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (167 aa)				•	•	•	•		0.487
	GSVIVG00019695001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (135 aa)				•		•			0.460
	GSVIVG00019911001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (166 aa)				•	•	•	•		0.450
	GSVIVG00002547001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (210 aa)						•			0.438
	GSVIVG00023864001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (103 aa)				•		•			0.437
	GSVIVG00000296001	SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (495 aa)						•	•		0.422
	GSVIVG00036059001	SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)						•			0.416
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)						•			0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	1e-13
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	3e-13
TIGR02228	158	TIGR02228, sigpep_I_arch, signal peptidase I, arch	2e-12
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	2e-10
cd06529	81	cd06529, S24_LexA-like, Peptidase S24 LexA-like pr	4e-04
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	0.002

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 60.7 bits (148), Expect = 1e-13
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 49  PVVVVLSGSMEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKV 101
             VVV  GSMEP  + GD++ ++         + G++VVF   G    PI+ RVI  
Sbjct: 1   EPVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIGY 57

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 60.0 bits (146), Expect = 3e-13
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 49  PVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV 101
             + V   SMEP    GD++ +  S    + G+IVVF + G E   V RVI +
Sbjct: 1   FALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPGGE-LTVKRVIGL 52

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|131283 TIGR02228, sigpep_I_arch, signal peptidase I, archaeal type

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 39  ALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDP--IRAGEIVVFNVDGREIPIVH 96
            L+       PVVVVLSGSMEP F  GD++ +    DP  I+ G+++ +   G   P+ H
Sbjct: 22  GLVSKASGPDPVVVVLSGSMEPTFNTGDLILV-TGADPNDIQVGDVITYKSPGFNTPVTH 80

Query: 97  RVIKVN 102
           RVI++N
Sbjct: 81  RVIEIN 86

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I. Length = 158

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 52.2 bits (126), Expect = 2e-10
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 52  VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV 101
            V   SMEP    GD+L +  + +P R G+IVV  +DG E   V R+I +
Sbjct: 1   RVKGDSMEPTIPDGDLLLVDKTSEPKR-GDIVVARLDGEE-ATVKRLIGL 48

Length = 69

>gnl|CDD|119397 cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 57 SMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGR 90
          SMEP    GD++ +  S D  R G+IVV  +DG 
Sbjct: 9  SMEPTIPDGDLVLVDPS-DTPRDGDIVVARLDGE 41

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response. Length = 81

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 32 SALIIWKALMCITGSES---PVVVVLSGSMEPGFKRGDILFLH 71
          S+L+I   L  I G  +     VVV SGSMEP    GD + + 
Sbjct: 12 SSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLNVGDRVLVK 54

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PRK10861	324	signal peptidase I; Provisional	99.81
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	99.79
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	99.77
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.75
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.46
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.42
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.42
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.41
KOG0171	176	consensus Mitochondrial inner membrane protease, s	99.36
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.16
KOG1568	174	consensus Mitochondrial inner membrane protease, s	99.07
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	99.02
COG2932	214	Predicted transcriptional regulator [Transcription	98.82
PRK00215	205	LexA repressor; Validated	98.42
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.41
PRK13838	176	conjugal transfer pilin processing protease TraF;	98.35
PRK12423	202	LexA repressor; Provisional	98.3
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	98.23
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.2
PRK13884	178	conjugal transfer peptidase TraF; Provisional	97.7
COG1974	201	LexA SOS-response transcriptional repressors (RecA	97.69
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	96.06
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	87.65
TIGR00008	68	infA translation initiation factor IF-1. This fami	87.18
PF01176	65	eIF-1a: Translation initiation factor 1A / IF-1; I	83.53
cd05793	77	S1_IF1A S1_IF1A: Translation initiation factor IF1	81.22

>PRK10861 signal peptidase I; Provisional

Probab=99.81  E-value=1.5e-19  Score=144.45  Aligned_cols=90  Identities=26%  Similarity=0.328  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccCcCCCEEEEecc---------------CCCCCCCcE
Q 033489           18 QVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEI   82 (118)
Q Consensus        18 ~i~~~i~~i~~~~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~GD~vlv~k~---------------~~~~~~GDI   82 (118)
                      .+++++..++.+++++++++.|++.       ++.|+|+||+|||++||.++++|.               ..+|+||||
T Consensus        59 ~~~~~~~~~~~~l~i~~~ir~fv~~-------~~~Ips~SM~PTL~~GD~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDI  131 (324)
T PRK10861         59 GWLETGASVFPVLAIVLIVRSFIYE-------PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDI  131 (324)
T ss_pred             hHHHHHHHHHHHHhHHHHHHhhEEE-------EEEECCCcCcCcccCCCEEEEEEeecCccCccccccccccCCCCCCCE
Confidence            3678888888888889999999887       599999999999999999999992               146899999


Q ss_pred             EEEEeCCC-CcCEEEEEEEECCCceEEE----EEEee
Q 033489           83 VVFNVDGR-EIPIVHRVIKVNILLTLFF----ELTIQ  114 (118)
Q Consensus        83 Vvf~~~~~-~~~~ikRVI~~~g~~~~~~----~~~~~  114 (118)
                      |+|+.|.+ +..+||||||+|||..++-    +|.|.
T Consensus       132 VVF~~P~~~~~~yIKRVIGlPGD~I~~~~~~~~l~iN  168 (324)
T PRK10861        132 VVFKYPEDPKLDYIKRVVGLPGDKVTYDPVSKEVTIQ  168 (324)
T ss_pred             EEEecCCCCCCcEEEEeeecCCcEEEEEeCCCEEEEc
Confidence            99998764 4579999999999999884    55554

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7.4e-19  Score=127.31  Aligned_cols=103  Identities=61%  Similarity=0.962  Sum_probs=96.3

Q ss_pred             CcchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccCcCCCEEEEec-cCCCCCC
Q 033489            1 MGWIGESIESIKSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHM-SKDPIRA   79 (118)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~GD~vlv~k-~~~~~~~   79 (118)
                      |.|..|....+|+|++|+.+.-++.++.++..++.+|..+....|+++|+++|.|+||||.++.||+++... ..+..+.
T Consensus         1 ~~~~~~~~~~~k~mn~Rq~l~Q~ln~~mivssA~MiwK~l~vvt~seSPiVVVLSgSMePaF~RGDlLfL~N~~~~p~~v   80 (180)
T KOG3342|consen    1 MLVSLEMFDDLKRMNIRQLLYQVLNFAMIVSSAYMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNRNEDPIRV   80 (180)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeCCCCCEEEEEcCCcCcccccccEEEEecCCCCccee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999875 5566899


Q ss_pred             CcEEEEEeCCCCcCEEEEEEEECC
Q 033489           80 GEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        80 GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      ||||+|+.++++.+.+|||+.+-+
T Consensus        81 GdivVf~vegR~IPiVHRviK~he  104 (180)
T KOG3342|consen   81 GDIVVFKVEGREIPIVHRVIKQHE  104 (180)
T ss_pred             ccEEEEEECCccCchhHHHHHHhc
Confidence            999999999998899999998765

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=99.77  E-value=1.8e-18  Score=125.83  Aligned_cols=81  Identities=28%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccCcCCCEEEEecc---CCCCCCCcEEEEEeCCC-CcCEEEE
Q 033489           22 QGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---KDPIRAGEIVVFNVDGR-EIPIVHR   97 (118)
Q Consensus        22 ~i~~i~~~~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~GD~vlv~k~---~~~~~~GDIVvf~~~~~-~~~~ikR   97 (118)
                      |+..++++++++++++.+++.       ++.|+|+||+|||++||+++++|.   ..++++||+|+|+.+++ +..++||
T Consensus         1 ~~~~~~~~~~~~~~i~~~~~~-------~~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKR   73 (163)
T TIGR02227         1 LILSLLIAILLALLIRTFVFF-------PYKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKR   73 (163)
T ss_pred             CHHHHHHHHHHHHHHHhhEEE-------EEEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEE
Confidence            355566677777788888776       599999999999999999999983   36799999999998653 4579999


Q ss_pred             EEEECCCceEEE
Q 033489           98 VIKVNILLTLFF  109 (118)
Q Consensus        98 VI~~~g~~~~~~  109 (118)
                      |+|+|||..+.-
T Consensus        74 Vig~pGd~v~i~   85 (163)
T TIGR02227        74 VIGLPGDKVEFR   85 (163)
T ss_pred             EEecCCCEEEEE
Confidence            999999877653

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.75  E-value=1.9e-17  Score=120.65  Aligned_cols=75  Identities=33%  Similarity=0.613  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEeCCCccccCcCCCEEEEec-cCCCCCCCcEEEEEeCCCCcCEEEEEEEECCCceE
Q 033489           32 SALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHM-SKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLTL  107 (118)
Q Consensus        32 i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~GD~vlv~k-~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~~  107 (118)
                      +++++..+.+. .+++.|.+.|.|+||+||+++||.+++++ ..+++++||+|+|+.++++..++|||+++.+++++
T Consensus        16 ~~~~~~~l~~~-~~~~~p~v~V~g~SM~Ptl~~GD~vlv~~~~~~~~~~GDIVvf~~~~~~~~iihRVi~v~~~~g~   91 (158)
T TIGR02228        16 VILLLYGLVSK-ASGPDPVVVVLSGSMEPTFNTGDLILVTGADPNDIQVGDVITYKSPGFNTPVTHRVIEINNSGGE   91 (158)
T ss_pred             HHHHHHHheee-ccCCCcEEEEcCCCCcCCccCCCEEEEEecccCCCCCCCEEEEEECCCCccEEEEEEEEECCCCc
Confidence            33334343333 34555667799999999999999999998 45679999999999887656899999999876543

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.46  E-value=1.8e-13  Score=85.45  Aligned_cols=54  Identities=35%  Similarity=0.481  Sum_probs=44.3

Q ss_pred             EEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECCCce
Q 033489           52 VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLT  106 (118)
Q Consensus        52 ~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~  106 (118)
                      .|.|+||+|++++||++++++. .+++.||+|+|+.++....++||+.+.+++..
T Consensus         1 ~V~GdSM~P~i~~Gd~v~v~~~-~~~~~gdivv~~~~~~~~~~iKrv~~~~~~~~   54 (70)
T PF00717_consen    1 RVEGDSMEPTIKDGDIVLVDPS-SEPKDGDIVVVKIDGDEELYIKRVVGEPGGII   54 (70)
T ss_dssp             EEESSTTGGTSSTTEEEEEEET-S---TTSEEEEEETTEESEEEEEEEEETTEEE
T ss_pred             CeECcCcccCeeCCCEEEEEEc-CCCccCeEEEEEECCceeeEEEEEEEeCCCEE
Confidence            4899999999999999999984 47999999999988764479999999987443

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.42  E-value=6.1e-13  Score=86.32  Aligned_cols=51  Identities=39%  Similarity=0.660  Sum_probs=44.6

Q ss_pred             eEEEeCCCccccCcCCCEEEEeccCC---CCCCCcEEEEEeCCC-CcCEEEEEEE
Q 033489           50 VVVVLSGSMEPGFKRGDILFLHMSKD---PIRAGEIVVFNVDGR-EIPIVHRVIK  100 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~vlv~k~~~---~~~~GDIVvf~~~~~-~~~~ikRVI~  100 (118)
                      .+.|.|+||+|++++||++++++...   ++++||+|+|+.++. ...++||+++
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~   56 (85)
T cd06530           2 PVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG   56 (85)
T ss_pred             eeEEcCCCCcCcccCCCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE
Confidence            48999999999999999999998433   699999999998874 4579999977

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.42  E-value=8.4e-13  Score=86.82  Aligned_cols=54  Identities=22%  Similarity=0.125  Sum_probs=45.0

Q ss_pred             EEeCCCccccCcCCCEEEEec---cCCCCCCCcEEEEEeCCC-CcCEEEEEEEECCCc
Q 033489           52 VVLSGSMEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVNILL  105 (118)
Q Consensus        52 ~V~g~SM~Ptl~~GD~vlv~k---~~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~~  105 (118)
                      .|.|+||+|+|++||.+++++   ....+++||+|+|+.+++ ++.++||++++++++
T Consensus         2 ~V~g~SM~P~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~~~   59 (90)
T TIGR02754         2 KVTGVSMSPTLPPGDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDDNG   59 (90)
T ss_pred             EeeCCCccCccCCCCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcCCe
Confidence            689999999999999999997   234457899999997763 367999999998754

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.41  E-value=2.9e-13  Score=96.63  Aligned_cols=84  Identities=30%  Similarity=0.339  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHhhCCCCCeEEEeCCCccccCcCCCEEEEecc---CCCCCCCcEEEEEeCCCCcC
Q 033489           19 VLTQGVSLGMIVTSALII--WKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMS---KDPIRAGEIVVFNVDGREIP   93 (118)
Q Consensus        19 i~~~i~~i~~~~~i~~li--~~~~~~~~g~~~~~~~V~g~SM~Ptl~~GD~vlv~k~---~~~~~~GDIVvf~~~~~~~~   93 (118)
                      ...|+..++.++++++++  ..+.+.       ++.|+|+||+||++.||+++++|.   ...++.+|++.+... ....
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~V~s~SM~Ptl~~GD~v~v~k~~~~~~~~~~~~~~~~~~~-~~~~   78 (166)
T COG0681           7 FLELISSLLIAIILALIIGVRTFVFE-------PVVVPSGSMEPTLNVGDRVLVKKFSYGFGKLKVPDIIVLPAV-VEGD   78 (166)
T ss_pred             HHHHHHHHHHHHHHhheeeeEEEEEE-------EEEECCCccccccccCCEEEEEeccccccCCccceeeecCCC-CCcc
Confidence            556677777777777666  455554       699999999999999999999993   234677777633222 2346


Q ss_pred             EEEEEEEECCCceEEEE
Q 033489           94 IVHRVIKVNILLTLFFE  110 (118)
Q Consensus        94 ~ikRVI~~~g~~~~~~~  110 (118)
                      ++||+++.+||...|-.
T Consensus        79 ~~kr~~~~~GD~i~~~~   95 (166)
T COG0681          79 LIKRVIGLRGDIVVFKD   95 (166)
T ss_pred             eEEEeccCCCCEEEEEC
Confidence            99999999998887763

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2e-12  Score=94.77  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEeCCCccccCcCC-CEEEEec---cCCCCCCCcEEEEEeCCC-CcCEEEEEEEECCC
Q 033489           30 VTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRG-DILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVNIL  104 (118)
Q Consensus        30 ~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~~G-D~vlv~k---~~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~  104 (118)
                      .|++.....+++.       +...+|.||+||++++ |+++.+|   .++.+++||||+++.|.+ .+.++|||+|++||
T Consensus        22 ~~f~h~t~~yl~e-------~~~~~gpSM~PTl~~~gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~cKRIva~eGD   94 (176)
T KOG0171|consen   22 AAFTHVTHEYLGE-------FVMCSGPSMEPTLHDGGDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHICKRIVAMEGD   94 (176)
T ss_pred             HHHHHHHHHHhcc-------eeeccCCCcCceecCCCcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhhhheeeccCCc
Confidence            3444455556665       5889999999999865 5555476   456789999999998866 56799999999998


Q ss_pred             ceEEE
Q 033489          105 LTLFF  109 (118)
Q Consensus       105 ~~~~~  109 (118)
                      -.+..
T Consensus        95 ~v~v~   99 (176)
T KOG0171|consen   95 LVEVH   99 (176)
T ss_pred             eEEEe
Confidence            55544

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.16  E-value=3.5e-10  Score=71.97  Aligned_cols=53  Identities=34%  Similarity=0.473  Sum_probs=46.5

Q ss_pred             eEEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      .+.|.|+||+|++++||.+++++....++.||+++++.++ ...++||+...++
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~i~~~~~~~~~G~iv~~~~~~-~~~~ikrl~~~~~   54 (84)
T cd06462           2 ALRVEGDSMEPTIPDGDLVLVDKSSYEPKRGDIVVFRLPG-GELTVKRVIGLPG   54 (84)
T ss_pred             eeEEcCCCccCcccCCCEEEEEecCCCCcCCEEEEEEcCC-CcEEEEEEEEECC
Confidence            3789999999999999999999854459999999999876 3579999999986

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=2.8e-10  Score=83.42  Aligned_cols=56  Identities=25%  Similarity=0.404  Sum_probs=47.7

Q ss_pred             eEEEeCCCccccCcCC------CEEEEec-c--CCCCCCCcEEEEEeCCC-CcCEEEEEEEECCCc
Q 033489           50 VVVVLSGSMEPGFKRG------DILFLHM-S--KDPIRAGEIVVFNVDGR-EIPIVHRVIKVNILL  105 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~G------D~vlv~k-~--~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~~  105 (118)
                      ...|.|.||.||++++      |.|++.| .  .....+||||+|++|.+ +++++|||.|++|+-
T Consensus        33 va~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~p~~~~iKRv~alegd~   98 (174)
T KOG1568|consen   33 VAQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPNDPDKVIIKRVAALEGDI   98 (174)
T ss_pred             EeEEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCChhheeeeeeecccccE
Confidence            6899999999999876      8899998 2  24488999999998876 568999999999953

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=99.02  E-value=2.1e-09  Score=68.31  Aligned_cols=51  Identities=33%  Similarity=0.468  Sum_probs=45.3

Q ss_pred             eEEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      .+.+.|+||+|++++||.+++++.. .++.||+++++.++  +.++||+...++
T Consensus         2 ~~~v~g~sM~p~i~~gd~lii~~~~-~~~~g~i~~~~~~~--~~~ikr~~~~~~   52 (81)
T cd06529           2 ALRVKGDSMEPTIPDGDLVLVDPSD-TPRDGDIVVARLDG--ELTVKRLQRRGG   52 (81)
T ss_pred             EEEEECCCcCCccCCCCEEEEcCCC-CCCCCCEEEEEECC--EEEEEEEEECCC
Confidence            3789999999999999999999854 49999999999876  469999999886

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.82  E-value=1.5e-08  Score=76.11  Aligned_cols=55  Identities=27%  Similarity=0.346  Sum_probs=45.4

Q ss_pred             eEEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECCCce
Q 033489           50 VVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNILLT  106 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~  106 (118)
                      ...|.|+||+|++++||.++|+.. .+..+||.+++...+. ..++||+...++...
T Consensus       125 ~i~V~GDSMeP~~~~Gd~ilVd~~-~~~~~gd~v~v~~~g~-~~~VK~l~~~~~~~~  179 (214)
T COG2932         125 ALRVTGDSMEPTYEDGDTLLVDPG-VNTRRGDRVYVETDGG-ELYVKKLQREPGGLL  179 (214)
T ss_pred             EEEEeCCcccccccCCCEEEECCC-CceeeCCEEEEEEeCC-eEEEEEEEEecCCeE
Confidence            479999999999999999999984 4578899777766653 469999999998444

>PRK00215 LexA repressor; Validated

Probab=98.42  E-value=1e-06  Score=65.58  Aligned_cols=49  Identities=29%  Similarity=0.417  Sum_probs=42.1

Q ss_pred             eEEEeCCCcc-ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV  101 (118)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~  101 (118)
                      .+.|.|+||. |++++||.+++++. .+++.||+|++..++  +.++||+...
T Consensus       120 ~~~V~GdSM~~~~i~~Gd~v~v~~~-~~~~~G~ivv~~~~~--~~~vKrl~~~  169 (205)
T PRK00215        120 LLRVRGDSMIDAGILDGDLVIVRKQ-QTARNGQIVVALIDD--EATVKRFRRE  169 (205)
T ss_pred             EEEEccCCCCCCCcCCCCEEEEeCC-CCCCCCCEEEEEECC--EEEEEEEEEe
Confidence            5789999995 79999999999974 468999999998876  4699999865

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.41  E-value=9.4e-07  Score=62.64  Aligned_cols=48  Identities=29%  Similarity=0.416  Sum_probs=40.7

Q ss_pred             eEEEeCCCcc-ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEE
Q 033489           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIK  100 (118)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~  100 (118)
                      .+.|.|+||+ |++++||.+++++. ..++.||++++..+++  ..+||...
T Consensus        53 ~l~V~GdSM~~~~I~~GD~liVd~~-~~~~~Gdivv~~~~g~--~~vKrl~~  101 (139)
T PRK10276         53 FVKASGDSMIDAGISDGDLLIVDSA-ITASHGDIVIAAVDGE--FTVKKLQL  101 (139)
T ss_pred             EEEEecCCCCCCCCCCCCEEEEECC-CCCCCCCEEEEEECCE--EEEEEEEE
Confidence            5899999998 68999999999984 4589999999987653  58999875

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=98.35  E-value=3.4e-06  Score=62.53  Aligned_cols=35  Identities=14%  Similarity=0.272  Sum_probs=27.8

Q ss_pred             CCCCCCCcEEEEEeCCCC--------------------cCEEEEEEEECCCceEE
Q 033489           74 KDPIRAGEIVVFNVDGRE--------------------IPIVHRVIKVNILLTLF  108 (118)
Q Consensus        74 ~~~~~~GDIVvf~~~~~~--------------------~~~ikRVI~~~g~~~~~  108 (118)
                      ..++++||+|+|+.|+..                    ..++|||+|+|||..+.
T Consensus        48 ~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i  102 (176)
T PRK13838         48 DRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEI  102 (176)
T ss_pred             CCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEE
Confidence            467999999999865431                    25999999999988763

>PRK12423 LexA repressor; Provisional

Probab=98.30  E-value=2.7e-06  Score=63.72  Aligned_cols=50  Identities=32%  Similarity=0.460  Sum_probs=42.4

Q ss_pred             eEEEeCCCcc-ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN  102 (118)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~  102 (118)
                      .+.|.|+||. |++.+||.+++++. .+++.||+|++..++  +.++||.....
T Consensus       116 ~l~V~GdSM~~~~i~~Gd~viv~~~-~~~~~Gdivv~~~~~--~~~vKrl~~~~  166 (202)
T PRK12423        116 LLQVQGDSMIDDGILDGDLVGVHRS-PEARDGQIVVARLDG--EVTIKRLERSG  166 (202)
T ss_pred             EEEEecCcCCCCCcCCCCEEEEeCC-CcCCCCCEEEEEECC--EEEEEEEEEeC
Confidence            5899999997 79999999999974 578999999998764  46899987653

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=98.23  E-value=7.5e-06  Score=60.35  Aligned_cols=52  Identities=19%  Similarity=0.245  Sum_probs=36.3

Q ss_pred             EEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCC--------------------cCEEEEEEEECCCceEEE
Q 033489           52 VVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGRE--------------------IPIVHRVIKVNILLTLFF  109 (118)
Q Consensus        52 ~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~--------------------~~~ikRVI~~~g~~~~~~  109 (118)
                      .=.++||-..+-    . ..+ ..++++||+|+|+.+++.                    ..++|||+|+|||..+.-
T Consensus        28 ~N~T~S~P~g~Y----~-~~~-~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpGD~V~i~   99 (171)
T TIGR02771        28 INTTKSLPLGLY----W-TTS-SKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPGDRVTVR   99 (171)
T ss_pred             EECCCCCcceEE----E-eCC-CCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCCCEEEEE
Confidence            344556665543    2 322 457999999999976532                    169999999999887653

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.20  E-value=6.6e-06  Score=60.97  Aligned_cols=49  Identities=35%  Similarity=0.495  Sum_probs=41.7

Q ss_pred             eEEEeCCCcc-ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV  101 (118)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~  101 (118)
                      .+.|.|+||+ |.+++||.+++++. .+++.||+|++..++  +.++||....
T Consensus       113 ~~~V~GdSM~~~~i~~Gd~v~v~~~-~~~~~G~ivvv~~~~--~~~vKrl~~~  162 (199)
T TIGR00498       113 LLKVMGDSMVDAGICDGDLLIVRSQ-KDARNGEIVAAMIDG--EVTVKRFYKD  162 (199)
T ss_pred             EEEecCCCCCCCCCCCCCEEEEecC-CCCCCCCEEEEEECC--EEEEEEEEEE
Confidence            5899999996 68999999999974 579999999999843  4689998754

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=97.70  E-value=0.00062  Score=50.45  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             CCCCCCcEEEEEeCCC--------------------CcCEEEEEEEECCCceEEE
Q 033489           75 DPIRAGEIVVFNVDGR--------------------EIPIVHRVIKVNILLTLFF  109 (118)
Q Consensus        75 ~~~~~GDIVvf~~~~~--------------------~~~~ikRVI~~~g~~~~~~  109 (118)
                      .++++||+|+|..|..                    ..+++|||+|+|||..+.-
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~  103 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVT  103 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEE
Confidence            3578888888875431                    1268999999999887664

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=97.69  E-value=0.00017  Score=54.59  Aligned_cols=51  Identities=29%  Similarity=0.445  Sum_probs=43.1

Q ss_pred             eEEEeCCCcc-ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489           50 VVVVLSGSME-PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN  102 (118)
Q Consensus        50 ~~~V~g~SM~-Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~  102 (118)
                      ...|.|+||. +.+.+||.|+|++ ..+.+.||||+...++ ++..+||...-.
T Consensus       114 ~L~V~GdSM~~~gi~dGDlvvV~~-~~~a~~GdiVvA~i~g-~e~TvKrl~~~g  165 (201)
T COG1974         114 FLRVSGDSMIDAGILDGDLVVVDP-TEDAENGDIVVALIDG-EEATVKRLYRDG  165 (201)
T ss_pred             EEEecCCccccCcCCCCCEEEEcC-CCCCCCCCEEEEEcCC-CcEEEEEEEEeC
Confidence            5899999998 6788999999997 5679999999999887 457888876654

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.06  E-value=0.0016  Score=46.28  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=0.0

Q ss_pred             CCCCCcEEEEEeCCC-------------CcCEEEEEEEECCCceEE
Q 033489           76 PIRAGEIVVFNVDGR-------------EIPIVHRVIKVNILLTLF  108 (118)
Q Consensus        76 ~~~~GDIVvf~~~~~-------------~~~~ikRVI~~~g~~~~~  108 (118)
                      .+++||+|+|..|..             +..++|||+|+|||....
T Consensus        21 ~~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v   66 (138)
T PF10502_consen   21 KIERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEV   66 (138)
T ss_dssp             ----------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            378888888876541             236899999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=87.65  E-value=0.6  Score=30.23  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             CCCccc---cCcCCCEEEEeccCCCCCCCcEE
Q 033489           55 SGSMEP---GFKRGDILFLHMSKDPIRAGEIV   83 (118)
Q Consensus        55 g~SM~P---tl~~GD~vlv~k~~~~~~~GDIV   83 (118)
                      ++.|.=   -+.+||.|+|..+..++++|||+
T Consensus        37 ~GKmr~~~i~I~~GD~V~Ve~~~~d~~kg~I~   68 (75)
T COG0361          37 SGKMRKNRIRILPGDVVLVELSPYDLTKGRIV   68 (75)
T ss_pred             cCcchheeEEeCCCCEEEEEecccccccccEE
Confidence            345544   45788888888766678888876

>TIGR00008 infA translation initiation factor IF-1

Probab=87.18  E-value=0.62  Score=29.57  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=13.7

Q ss_pred             CcCCCEEEEeccCCCCCCCcEE
Q 033489           62 FKRGDILFLHMSKDPIRAGEIV   83 (118)
Q Consensus        62 l~~GD~vlv~k~~~~~~~GDIV   83 (118)
                      +.+||+|.|..+..++.+|||+
T Consensus        45 I~~GD~V~Ve~spyd~tkgrIi   66 (68)
T TIGR00008        45 ILPGDKVKVELSPYDLTRGRIT   66 (68)
T ss_pred             ECCCCEEEEEECcccCCcEeEE
Confidence            3566766666655566666665

This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins

Probab=83.53  E-value=0.93  Score=28.03  Aligned_cols=11  Identities=27%  Similarity=0.631  Sum_probs=5.8

Q ss_pred             CCCCcEEEEEe
Q 033489           77 IRAGEIVVFNV   87 (118)
Q Consensus        77 ~~~GDIVvf~~   87 (118)
                      +++||.|+...
T Consensus        42 I~~GD~V~V~~   52 (65)
T PF01176_consen   42 IKRGDFVLVEP   52 (65)
T ss_dssp             --TTEEEEEEE
T ss_pred             cCCCCEEEEEe
Confidence            56666666664

It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

Probab=81.22  E-value=1.4  Score=28.39  Aligned_cols=21  Identities=19%  Similarity=0.274  Sum_probs=10.8

Q ss_pred             cCCCEEEEeccCCCCCCCcEE
Q 033489           63 KRGDILFLHMSKDPIRAGEIV   83 (118)
Q Consensus        63 ~~GD~vlv~k~~~~~~~GDIV   83 (118)
                      .+||.|+++.+..+..+|||+
T Consensus        40 ~~GD~V~Ve~~~~d~~kg~Iv   60 (77)
T cd05793          40 NEGDIVLVAPWDFQDDKADII   60 (77)
T ss_pred             cCCCEEEEEeccccCCEEEEE
Confidence            455555555543445555554

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	99.62
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.04
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.04
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	98.93
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	98.76
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.6
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.52
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	95.21

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=99.62  E-value=1.8e-16  Score=120.61  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=51.6

Q ss_pred             eEEEeCCCccccCcCCCEEEEecc---------------CCCCCCCcEEEEEeCCC-CcCEEEEEEEECCCceEE
Q 033489           50 VVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVNILLTLF  108 (118)
Q Consensus        50 ~~~V~g~SM~Ptl~~GD~vlv~k~---------------~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~~~~~  108 (118)
                      ++.|+|+||+|||++||+|+++|.               ..++++||||+|+.|.+ +..++|||+|+|||...+
T Consensus         8 ~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i   82 (248)
T 1b12_A            8 PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTY   82 (248)
T ss_dssp             EEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEE
T ss_pred             EEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEE
Confidence            699999999999999999999983               25799999999998754 457999999999987654

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.04  E-value=6.2e-10  Score=74.89  Aligned_cols=52  Identities=17%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      .+.|.|+||+      |+|++||.+++++. .+++.||+|++..++ ++.++||++..++
T Consensus        15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~~   72 (109)
T 1kca_A           15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFKKLIRDSG   72 (109)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECST-TCEEEEEEEEETT
T ss_pred             EEEEeCcCcCCCCCCCCeeCCCCEEEEecC-CcCCCCCEEEEEECC-CeEEEEEEEEeCC
Confidence            5899999999      99999999999984 469999999998776 3579999998543

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.04  E-value=3.5e-10  Score=76.37  Aligned_cols=49  Identities=29%  Similarity=0.366  Sum_probs=43.1

Q ss_pred             eEEEeCCCccc-cCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489           50 VVVVLSGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV  101 (118)
Q Consensus        50 ~~~V~g~SM~P-tl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~  101 (118)
                      .+.|.|+||+| ++++||.+++++. .+++.||++++..++  +.++||+...
T Consensus        29 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~gdivv~~~~~--~~~vKr~~~~   78 (116)
T 1umu_A           29 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLR   78 (116)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETT--EEEEEEEECS
T ss_pred             EEEECCCCcCCCCCCCCCEEEEEcC-CCCCCCCEEEEEECC--EEEEEEEEeC
Confidence            58899999999 8999999999984 359999999999865  4799999874

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=98.93  E-value=3e-09  Score=73.48  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN  102 (118)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~  102 (118)
                      .+.|.|+||+      |+|++||.+++++. .+++.||+|++..++ ++.++||++..+
T Consensus        46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~  102 (133)
T 2hnf_A           46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFAKLIRDS  102 (133)
T ss_dssp             EEECCSSTTCCC---CCCCCTTCEEEEETT-SCCCTTSEEEEEETT-TEEEEEEEEEET
T ss_pred             EEEEeCCCcCCCcCCCCccCCCCEEEEccC-CCCCCCCEEEEEECC-CEEEEEEEEEeC
Confidence            5889999999      99999999999984 469999999998876 357999999754

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=98.76  E-value=1.9e-08  Score=73.06  Aligned_cols=50  Identities=30%  Similarity=0.400  Sum_probs=42.8

Q ss_pred             eEEEeCCCcccc-CcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~Pt-l~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      .+.|.|+||+|+ +++||.+++++. .+++.||++++..++  +.++||+.. ++
T Consensus       112 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~G~i~v~~~~~--~~~vKrl~~-~~  162 (202)
T 1jhf_A          112 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDD--EVTVKRLKK-QG  162 (202)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETT--EEEEEEEEE-ET
T ss_pred             EEEECCCCCCCCCCCCCCEEEEecc-CCcCCCeEEEEEECC--EEEEEEEEE-eC
Confidence            578899999999 999999999984 469999999998754  479999984 44

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.60  E-value=1.2e-07  Score=69.08  Aligned_cols=50  Identities=26%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             eEEEeCCCc-cccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489           50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN  102 (118)
Q Consensus        50 ~~~V~g~SM-~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~  102 (118)
                      .+.|.|+|| +|++.+||.+++++. ..++.||+|++..++  +.++||+...+
T Consensus       111 ~l~v~GdSM~~p~i~~GD~viv~~~-~~~~~G~ivv~~~~~--~~~vKr~~~~~  161 (196)
T 3k2z_A          111 LLKVKGESMIEEHICDGDLVLVRRQ-DWAQNGDIVAAMVDG--EVTLAKFYQRG  161 (196)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTCEEEEEETT--EEEEEEEEEET
T ss_pred             EEEEeCCCcCCCCCCCCCEEEEecc-CcCCCCCEEEEEECC--cEEEEEEEEEC
Confidence            589999999 699999999999984 568999999998875  47999998754

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.52  E-value=1.2e-07  Score=69.82  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      .+.|.|+||+      |++++||.|+|++.. +++.||++++..++. +.++||+...++
T Consensus       142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~-~~~~g~ivv~~~~~~-~~~vKrl~~~~~  199 (236)
T 3bdn_A          142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ-AVEPGDFCIARLGGD-EFTFKKLIRGSG  199 (236)
T ss_dssp             EEECCSSSSCCCSSCSSCCCSSCEEEECCSS-CCCTTSEEEEESTTT-CCCCEEEECCSS
T ss_pred             EEEEeCCCcCCCCCCCCcCCCCCEEEECCCC-CCCCCcEEEEEECCC-eEEEEEEEEcCC
Confidence            4689999999      999999999999844 699999999987532 469999987443

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=95.21  E-value=0.037  Score=38.82  Aligned_cols=45  Identities=11%  Similarity=0.112  Sum_probs=36.0

Q ss_pred             CCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECCC
Q 033489           56 GSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNIL  104 (118)
Q Consensus        56 ~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~  104 (118)
                      ++|.+.-++||.++|++.  ++..|+++++..++  +.++||+...++.
T Consensus       113 ~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~  157 (189)
T 2fjr_A          113 TDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR  157 (189)
T ss_dssp             SSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT
T ss_pred             CCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC
Confidence            456665589999999986  48889999998765  4699999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	99.56
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	98.75
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	98.75
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.5
d1hr0w_	71	Translational initiation factor 1, IF1 {Escherichi	84.85

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.2e-15  Score=111.43  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             CeEEEeCCCccccCcCCCEEEEecc---------------CCCCCCCcEEEEEeCCC-CcCEEEEEEEECCCceEEE
Q 033489           49 PVVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVNILLTLFF  109 (118)
Q Consensus        49 ~~~~V~g~SM~Ptl~~GD~vlv~k~---------------~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~~~~~~  109 (118)
                      +++.|+|+||+|||+.||+++|+|.               ...+++||+|+|+.+.+ ...++|||+|+|||...+.
T Consensus         6 ~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pGD~i~~~   82 (247)
T d1b12a_           6 EPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYD   82 (247)
T ss_dssp             EEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEE
T ss_pred             EEEEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCccccccccCCCCCeEEEe
Confidence            3799999999999999999999982               13579999999998765 3469999999999987754

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.1e-08  Score=68.81  Aligned_cols=51  Identities=29%  Similarity=0.412  Sum_probs=44.4

Q ss_pred             eEEEeCCCcccc-CcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489           50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI  103 (118)
Q Consensus        50 ~~~V~g~SM~Pt-l~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g  103 (118)
                      ...|.|+||+|+ +++||++++++. .+++.||++++..+++  .++||+...++
T Consensus        40 ~lrV~GdSM~~~~i~~gd~viv~~~-~~~~~G~ivv~~~~ge--~~vKrl~~~~~   91 (126)
T d1jhfa2          40 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDDE--VTVKRLKKQGN   91 (126)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETTE--EEEEEEEEETT
T ss_pred             EEEEcCCcccCcccCCCEEEEEecc-ccccCCCEEEEEECCE--EEEEEEEEcCC
Confidence            589999999998 999999999984 5799999999998763  69999987643

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=98.75  E-value=1.6e-08  Score=65.69  Aligned_cols=51  Identities=18%  Similarity=0.387  Sum_probs=42.7

Q ss_pred             eEEEeCCCc------cccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489           50 VVVVLSGSM------EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN  102 (118)
Q Consensus        50 ~~~V~g~SM------~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~  102 (118)
                      ...|.|+||      +|++++||.+++++. .+++.||+|++..++. +.++||+.-.+
T Consensus         7 ~l~V~GdSM~~~~~~ep~i~~Gd~viVd~~-~~~~~g~ivva~~~~~-~~~vKr~~~~~   63 (101)
T d1f39a_           7 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFKKLIRDS   63 (101)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECTTS-CEEEEEEEEET
T ss_pred             EEEEeCCccCCCcccCCCcCCCCEEEEEec-CccCCCCEEEEEECCC-eEEEEEEEEcC
Confidence            468999999      899999999999984 5799999998876654 35899997654

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1e-07  Score=62.41  Aligned_cols=47  Identities=30%  Similarity=0.464  Sum_probs=41.2

Q ss_pred             eEEEeCCCc-cccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEE
Q 033489           50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVI   99 (118)
Q Consensus        50 ~~~V~g~SM-~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI   99 (118)
                      ...|.|+|| +|.+.+||++++++. .+++.||+|++..+++  .++||..
T Consensus        22 ~~rV~GdSM~~~gI~~GDlliVd~~-~~~~~g~ivva~i~ge--~~vKrl~   69 (105)
T d1umua_          22 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDGE--FTVKKLQ   69 (105)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETTE--EEEEEEE
T ss_pred             EEEEcCCccccCccCCCCEEEEEcc-cccccCcEEEEEECCE--EEEEEEE
Confidence            589999999 588999999999984 5799999999998864  6899975

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=84.85  E-value=0.31  Score=28.66  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=16.5

Q ss_pred             cCcCCCEEEEeccCCCCCCCcEE
Q 033489           61 GFKRGDILFLHMSKDPIRAGEIV   83 (118)
Q Consensus        61 tl~~GD~vlv~k~~~~~~~GDIV   83 (118)
                      -+.+||.|.|..+..++.+|||+
T Consensus        46 ~i~~GD~V~Vel~pyd~~kgrIi   68 (71)
T d1hr0w_          46 RILPGDRVVVEITPYDPTRGRIV   68 (71)
T ss_dssp             CCCTTCEEEEECCTTCTTCCEEC
T ss_pred             EecCCCEEEEEECccCCCcEEEE
Confidence            35678888887766677777775