Citrus Sinensis ID: 033500

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAiygdvptptppageaakeDAKSSATKLVI
Flexible Loop (DISEMBL)
MDLANKLTNLAIkainsntvVNTCLIASFAALTLRSVKQQNdieglesekesLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPtppageaakedakssatklvi
Low Complexity Region (SEG)
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI
Disordered region (IsUnstruct)
******LTNLAIKAINSNTVVNTCLIASFAALTLRSV**********************LKKRMWDWKQQLYAEATTESALVPLARLKAIYGD*************************
Disordered Region (DISOPRED)
**********AIKAINSNTVVNTCLIASFAALTLRSVKQQNDI******************KRMWDWKQQLYAEATTESALVPLARLKAIYG*********************TKLVI
Disordered Region (DISEMBL)
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPT********************
Disordered Region (DISPRO)
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVP***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDxxxxxxxxxxxxxxxxxxxxxMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
255545480	160	conserved hypothetical protein [Ricinus	0.932	0.687	0.633	6e-35
449468077	118	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.593	2e-32
315937259	116	hypothetical protein [Jatropha curcas]	0.983	1.0	0.627	3e-32
358248106	120	uncharacterized protein LOC100782626 [Gl	0.991	0.975	0.541	1e-30
224063094	116	predicted protein [Populus trichocarpa]	0.983	1.0	0.601	2e-29
302141823	141	unnamed protein product [Vitis vinifera]	0.949	0.794	0.559	2e-28
225459548	112	PREDICTED: uncharacterized protein LOC10	0.949	1.0	0.559	2e-28
147768186	96	hypothetical protein VITISV_026130 [Viti	0.771	0.947	0.6	4e-25
30694266	118	uncharacterized protein [Arabidopsis tha	0.983	0.983	0.508	9e-24
357440911	216	hypothetical protein MTR_1g073190 [Medic	0.915	0.5	0.478	5e-22

>gi|255545480|ref|XP_002513800.1| conserved hypothetical protein [Ricinus communis] gi|223546886|gb|EEF48383.1| conserved hypothetical protein [Ricinus communis]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 90/112 (80%), Gaps = 2/112 (1%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+ AN+L  LA +A NSN V+N CL+ SFAAL  RS+ QQ DI+ LE+EK++L+K+NK +
Sbjct: 1   MEFANRLVGLASRAANSNAVINVCLVGSFAALCARSIYQQKDIQALEAEKDTLIKSNKAM 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSS 112
           KK MWDWKQQL+AEA +++ALVPLARLKAIYGD   P+ P+G A KEDAKSS
Sbjct: 61  KKTMWDWKQQLFAEAESDAALVPLARLKAIYGD--APSSPSGNAVKEDAKSS 110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468077|ref|XP_004151748.1| PREDICTED: uncharacterized protein LOC101219754 [Cucumis sativus] gi|449500705|ref|XP_004161173.1| PREDICTED: uncharacterized protein LOC101225766 [Cucumis sativus]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 86/118 (72%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           MD A+K       A N NTV+N CL+ SFAALT RS+KQ+  IE LE+EK SL+ +NK L
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
           KK MWDWKQQL+AEA+TESALVPLAR+KAIYG+ P     A  A  EDA S ++KL++
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937259|gb|ADU56184.1| hypothetical protein [Jatropha curcas]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 93/118 (78%), Gaps = 2/118 (1%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+ AN+L   A KA N+NTV+N CL+ +F AL +RSV  Q DIE LE+EKESL+K+NK L
Sbjct: 1   MEFANRLVAAATKAANNNTVINVCLVGAFTALCVRSVNHQKDIEALEAEKESLIKSNKAL 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
           +K MWDWKQ+L+AEA ++SALVPLARLKAIYG+   P+ P G+A KEDAK  A+KLVI
Sbjct: 61  RKTMWDWKQELFAEAHSDSALVPLARLKAIYGE--APSHPTGDAGKEDAKLPASKLVI 116

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248106|ref|NP_001239814.1| uncharacterized protein LOC100782626 [Glycine max] gi|255647783|gb|ACU24352.1| unknown [Glycine max]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/120 (54%), Positives = 88/120 (73%), Gaps = 3/120 (2%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+  N++ ++A +A+NSN V+N CL+ASFA L +RS+ QQ  IE L+ EKESL K+NK +
Sbjct: 1   MEFVNRIVDIATRAVNSNAVINVCLLASFATLGVRSMNQQKTIEALQDEKESLTKSNKSI 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPA--GEAAKEDAKSSATKLVI 118
           +K +WDWKQQLYAEA+ +SA+VPLARLKAIYG+ P P P A   +   +DA SS    +I
Sbjct: 61  RKTLWDWKQQLYAEASADSAVVPLARLKAIYGEAP-PPPRATLADTVTKDANSSGANKII 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063094|ref|XP_002300992.1| predicted protein [Populus trichocarpa] gi|222842718|gb|EEE80265.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/118 (60%), Positives = 91/118 (77%), Gaps = 2/118 (1%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+ AN+L   A KA N+NTV+N CL+ SF  L  RS  QQN+IE L++EK+SLVK+NK +
Sbjct: 1   MEFANRLVAAATKAANNNTVINVCLVGSFLVLAARSANQQNNIEALKAEKDSLVKSNKAM 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
           KK MWDWKQQL++EA T+S LV +ARL+AIYG+   P P  G+A KE+AKSSA+KLVI
Sbjct: 61  KKTMWDWKQQLFSEAETDSDLVTVARLRAIYGE--APPPQTGDAVKEEAKSSASKLVI 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141823|emb|CBI19026.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 6/118 (5%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+  N++ ++A +A N+NTV+N  L+ SFAALT+RSV QQ +IE LE+EKESLVK NK L
Sbjct: 30  MEWGNRVMSIAARAANNNTVINVLLVGSFAALTVRSVNQQRNIEALEAEKESLVKTNKAL 89

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
           KK +WDWKQQL+ E       VPLARLKAIYG+ P      G+A KED+KSS  K ++
Sbjct: 90  KKTVWDWKQQLFGEPQP----VPLARLKAIYGEAPPLQ--TGDAEKEDSKSSVPKFMV 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459548|ref|XP_002285852.1| PREDICTED: uncharacterized protein LOC100260849 [Vitis vinifera]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 6/118 (5%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+  N++ ++A +A N+NTV+N  L+ SFAALT+RSV QQ +IE LE+EKESLVK NK L
Sbjct: 1   MEWGNRVMSIAARAANNNTVINVLLVGSFAALTVRSVNQQRNIEALEAEKESLVKTNKAL 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
           KK +WDWKQQL+ E       VPLARLKAIYG+ P      G+A KED+KSS  K ++
Sbjct: 61  KKTVWDWKQQLFGEPQP----VPLARLKAIYGEAPPLQ--TGDAEKEDSKSSVPKFMV 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768186|emb|CAN73806.1| hypothetical protein VITISV_026130 [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 72/95 (75%), Gaps = 4/95 (4%)

Query: 1  MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
          M+  N++ ++A +A N+NTV+N  L+ SFAALT+RSV QQ +IE LE+EKESLVK NK L
Sbjct: 1  MEWGNRVMSIAARAANNNTVINVLLVGSFAALTVRSVNQQRNIEALEAEKESLVKTNKAL 60

Query: 61 KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVP 95
          KK +WDWKQQL+ E       VPLARLKAIYG+ P
Sbjct: 61 KKTVWDWKQQLFGEPQP----VPLARLKAIYGEAP 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694266|ref|NP_175254.2| uncharacterized protein [Arabidopsis thaliana] gi|38603890|gb|AAR24690.1| At1g48200 [Arabidopsis thaliana] gi|38603976|gb|AAR24731.1| At1g48200 [Arabidopsis thaliana] gi|332194142|gb|AEE32263.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)

Query: 3   LANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKK 62
           +ANK+     +A+N+N V+NTCL  SF  L LRS KQQ  +E L  +KESL K+NK +K 
Sbjct: 1   MANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKL 60

Query: 63  RMWDWKQQLY--AEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
            MW+WKQQL+  A +   +A+VPL+ LKAIYG+V T T  +G+ AKED+K S  K++I
Sbjct: 61  TMWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440911|ref|XP_003590733.1| hypothetical protein MTR_1g073190 [Medicago truncatula] gi|355479781|gb|AES60984.1| hypothetical protein MTR_1g073190 [Medicago truncatula]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 11/119 (9%)

Query: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60
           M+  +K+ ++A +A  +NTV+N  L A FA L  RS  QQ  IE LE+EK+SL K NK +
Sbjct: 1   MEFVHKIVDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSI 60

Query: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGD-----------VPTPTPPAGEAAKED 108
           +  +WDWKQQLYAEA ++SA VPLARL  IYG+           VP+   PAG A + D
Sbjct: 61  RNTLWDWKQQLYAEAASDSAPVPLARLYEIYGEAAPPQQSAPAIVPSARHPAGAAKRGD 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2023777	118	AT1G48200 "AT1G48200" [Arabido	0.983	0.983	0.525	2.2e-27

TAIR|locus:2023777 AT1G48200 "AT1G48200" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query:     3 LANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKK 62
             +ANK+     +A+N+N V+NTCL  SF  L LRS KQQ  +E L  +KESL K+NK +K 
Sbjct:     1 MANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKL 60

Query:    63 RMWDWKQQLYAEATT--ESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
              MW+WKQQL+AEA +   +A+VPL+ LKAIYG+V T T  +G+ AKED+K S  K++I
Sbjct:    61 TMWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.124   0.336    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 23  0.41    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  107 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:14
  Total cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:14
  Start:  Thu May  9 16:01:27 2013   End:  Thu May  9 16:01:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015382001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (149 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PRK00888	105	ftsB cell division protein FtsB; Reviewed	94.0
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	92.57
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	90.9
PF11853	489	DUF3373: Protein of unknown function (DUF3373); In	90.71
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	89.09
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	88.95
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	88.05
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	86.98
PF10828	110	DUF2570: Protein of unknown function (DUF2570); In	85.15
PRK15396	78	murein lipoprotein; Provisional	83.7
smart00338	65	BRLZ basic region leucin zipper.	81.67
PHA03162	135	hypothetical protein; Provisional	81.63

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=94.00  E-value=0.29  Score=34.90  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             hchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033500           35 RSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQ   70 (118)
Q Consensus        35 RS~~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~   70 (118)
                      +=..++.++++++++.+.|+++|..|+..+-.||.+
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~   63 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            345678899999999999999999999999999974

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=92.57  E-value=0.86  Score=29.77  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHhhhchhhhhh-------hhhhHHhHHHHHHHhHHHHHHH
Q 033500           20 VVNTCLIASFAALTLRSVKQQND-------IEGLESEKESLVKANKDLKKRM   64 (118)
Q Consensus        20 vI~~~l~~sf~~L~~RS~~QQ~~-------Ie~Leaek~SL~k~Nksl~~~M   64 (118)
                      .++++++..++++|+=-+.|++.       |.+++.+.+.+..+|+.|+...
T Consensus         3 ~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei   54 (85)
T TIGR02209         3 KLYVLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEV   54 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555444444444       4455555555555555554433

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.90  E-value=0.49  Score=29.80  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             HHHhhhchhhhhhhhhhHHhHHHHHHHhHHHH
Q 033500           30 AALTLRSVKQQNDIEGLESEKESLVKANKDLK   61 (118)
Q Consensus        30 ~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nksl~   61 (118)
                      ++..++-+.++.++..++.+.+.++++.+.++
T Consensus        37 l~~~~~~~~~r~~~~~~~k~l~~le~e~~~lr   68 (68)
T PF06305_consen   37 LLSLPSRLRLRRRIRRLRKELKKLEKELEQLR   68 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33445558899999999999999999887653

>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised

Probab=90.71  E-value=0.3  Score=43.77  Aligned_cols=30  Identities=30%  Similarity=0.368  Sum_probs=26.3

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQ   69 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq   69 (118)
                      || +||+|+.|.+.|+++.+.|.+++-...+
T Consensus        30 ~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~   59 (489)
T PF11853_consen   30 LQ-KIEALKKQLEELKAQQDDLNDRVDKVEK   59 (489)
T ss_pred             HH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence            44 9999999999999999999998876655

This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=89.09  E-value=1.4  Score=28.03  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             hhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033500           38 KQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA   73 (118)
Q Consensus        38 ~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lfa   73 (118)
                      ..+.+|+.||.+...|..+|..|++.+-.+++++-.
T Consensus        23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~   58 (64)
T PF00170_consen   23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQS   58 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999887654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=88.95  E-value=2.1  Score=27.95  Aligned_cols=25  Identities=28%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             hhhhhhhhhHHhHHHHHHHhHHHHH
Q 033500           38 KQQNDIEGLESEKESLVKANKDLKK   62 (118)
Q Consensus        38 ~QQ~~Ie~Leaek~SL~k~Nksl~~   62 (118)
                      ..+.+|+.+++|-+.|+.+...|.+
T Consensus        35 ~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        35 KLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3588899999999999999998875

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=88.05  E-value=1.1  Score=28.39  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=26.9

Q ss_pred             hhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHH
Q 033500           37 VKQQNDIEGLESEKESLVKANKDLKKRMWDWK   68 (118)
Q Consensus        37 ~~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wK   68 (118)
                      ...+.+|.+|+.+.+.|+++|+.|+..+-.++
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~   51 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERLK   51 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566799999999999999999998887773

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=86.98  E-value=3  Score=28.15  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=22.2

Q ss_pred             cchhhHHHHHHHHHHHHhhhch-------hhhhhhhhhHHhHHHHHHHhHHHH
Q 033500           16 NSNTVVNTCLIASFAALTLRSV-------KQQNDIEGLESEKESLVKANKDLK   61 (118)
Q Consensus        16 n~n~vI~~~l~~sf~~L~~RS~-------~QQ~~Ie~Leaek~SL~k~Nksl~   61 (118)
                      +....+.++++..++++++=.+       ...++++.++.+.+.|..+|..|+
T Consensus        10 ~~~~~l~i~l~~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~   62 (97)
T PF04999_consen   10 KRQKKLIILLVIVVLISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLR   62 (97)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445444444443333       334445555555555555555444

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT

Probab=85.15  E-value=5.4  Score=28.25  Aligned_cols=38  Identities=16%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHh
Q 033500           20 VVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKAN   57 (118)
Q Consensus        20 vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~N   57 (118)
                      +|...++.-+++|+.=++.|.++|+.|.++.+++.++-
T Consensus         4 ~~~~~l~~lvl~L~~~l~~qs~~i~~L~a~n~~q~~tI   41 (110)
T PF10828_consen    4 YIYIALAVLVLGLGGWLWYQSQRIDRLRAENKAQAQTI   41 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555577777778899999999999987654443

3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.

>PRK15396 murein lipoprotein; Provisional

Probab=83.70  E-value=8.7  Score=26.81  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=27.5

Q ss_pred             hcchhhHHHHHHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033500           15 INSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQ   70 (118)
Q Consensus        15 ~n~n~vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~   70 (118)
                      ||..+++-..++.++++|+==+..  .+++.|..+.++|......++...-+-|.+
T Consensus         1 m~~~kl~l~av~ls~~LLaGCAs~--~kvd~LssqV~~L~~kvdql~~dv~~~~~~   54 (78)
T PRK15396          1 MNRTKLVLGAVILGSTLLAGCSSN--AKIDQLSSDVQTLNAKVDQLSNDVNAMRSD   54 (78)
T ss_pred             CchhHHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556655566655555443333  245555555555555555555554444443

>smart00338 BRLZ basic region leucin zipper

Probab=81.67  E-value=5.1  Score=25.47  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=30.6

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAE   74 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lfae   74 (118)
                      .+..|+.||.+...|..+|..|...+-..++++...
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l   59 (65)
T smart00338       24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKL   59 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999998888877643

>PHA03162 hypothetical protein; Provisional

Probab=81.63  E-value=1.7  Score=33.65  Aligned_cols=30  Identities=37%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             hchhhhhhhhhhHHhHHHHHHHhHHHHHHH
Q 033500           35 RSVKQQNDIEGLESEKESLVKANKDLKKRM   64 (118)
Q Consensus        35 RS~~QQ~~Ie~Leaek~SL~k~Nksl~~~M   64 (118)
                      +-.+||-..|+|++|..-|+-|||.|++.|
T Consensus         7 ~~pk~~~tmEeLaaeL~kLqmENK~LKkkl   36 (135)
T PHA03162          7 KCPKAQPTMEDLAAEIAKLQLENKALKKKI   36 (135)
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 16/42 (38%)

Query: 49 EKESLVKANKDLKKRMWDWKQQLYAEATTESALVP-LARLKA 89
          EK++L K    LK         LYA+   +SA  P LA +KA
Sbjct: 18 EKQALKKLQASLK---------LYAD---DSA--PALA-IKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	91.04
3lay_A	175	Zinc resistance-associated protein; salmonella typ	87.07
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	85.2
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	84.04
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.83
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	83.77
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	83.31
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	81.5
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	81.19

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=91.04  E-value=0.24  Score=31.82  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQL   71 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~L   71 (118)
                      -|..++.||.+...|..+|..|...+-.||++|
T Consensus        28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999998876

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=87.07  E-value=1  Score=33.89  Aligned_cols=41  Identities=15%  Similarity=0.171  Sum_probs=31.4

Q ss_pred             chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhccC
Q 033500           36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTES   79 (118)
Q Consensus        36 S~~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~LfaeAa~ds   79 (118)
                      |.+||.++.+|.++-   +++.+.++..||+-+++|-++..+|+
T Consensus        69 T~EQq~ql~~I~~e~---r~~~~~Lr~ql~akr~EL~aL~~a~~  109 (175)
T 3lay_A           69 TTEQQATAQKIYDDY---YTQTSALRQQLISKRYEYNALLTASS  109 (175)
T ss_dssp             CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            378888888876543   45667789999999999988877654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=85.20  E-value=1.9  Score=27.06  Aligned_cols=34  Identities=12%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLY   72 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lf   72 (118)
                      .+..|+.|+.+.+.|..+|..|...+-..++++.
T Consensus        21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~   54 (63)
T 2wt7_A           21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKE   54 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999887777654

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=84.04  E-value=0.87  Score=30.11  Aligned_cols=30  Identities=27%  Similarity=0.235  Sum_probs=27.3

Q ss_pred             chhhhhhhhhhHHhHHHHHHHhHHHHHHHH
Q 033500           36 SVKQQNDIEGLESEKESLVKANKDLKKRMW   65 (118)
Q Consensus        36 S~~QQ~~Ie~Leaek~SL~k~Nksl~~~Mw   65 (118)
                      |...|++++.|+++++.|.++...|...|-
T Consensus        17 SykeqrEle~le~~Ie~LE~~i~~le~~la   46 (89)
T 2lw1_A           17 SYKLQRELEQLPQLLEDLEAKLEALQTQVA   46 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778999999999999999999999887774

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.83  E-value=1.4  Score=27.37  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=23.9

Q ss_pred             hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033500           40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLY   72 (118)
Q Consensus        40 Q~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lf   72 (118)
                      +..++.||.+.+.|..+|..|...+-..++++.
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~   53 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888888888888887777766666543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=83.77  E-value=2.5  Score=26.17  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033500           40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA   73 (118)
Q Consensus        40 Q~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lfa   73 (118)
                      +.+.+.|+.+...|..+-..|+.-+..+|+.|++
T Consensus        28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla   61 (61)
T 1t2k_D           28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5678899999999999999999999999998874

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=83.31  E-value=0.91  Score=28.32  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=26.3

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQ   69 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq   69 (118)
                      .|.++++||.+...|.++|..|+..+-..++
T Consensus        20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A           20 KKEYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999988766654

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=81.50  E-value=3.3  Score=27.24  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 033500           40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEAT   76 (118)
Q Consensus        40 Q~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~LfaeAa   76 (118)
                      ..+++.++.+...|.+.-+.+.+.|-+|+..|.+.-.
T Consensus        76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~  112 (117)
T 2zqm_A           76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR  112 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5678888999999999999999999999998875543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=81.19  E-value=2.8  Score=26.07  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033500           39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLY   72 (118)
Q Consensus        39 QQ~~Ie~Leaek~SL~k~Nksl~~~Mw~wKq~Lf   72 (118)
                      .+..|+.||.+...|..+|..|...+-..++++-
T Consensus        20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A           20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999988887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00