Citrus Sinensis ID: 033505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Secondary Structure (PSIPRED)
ccHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHcccccccccEEEcccccEEcccccccEEEEEcccEEEEEEEcccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHEHccccEEEEcHHcccEEEEEcccEEEEEEEEccHHHcccccEEEcccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAkreappgekpepvrtHLRNMIIVPEMIGSIIGvyngktfnqveikpeMIGHYLAEFsisykpvkhgrpgigathssrfiplk
Flexible Loop (DISEMBL)
MSTDELAKLFSArarrrfqrglkrkpmalikklrkakreappgekpepvrthLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHgrpgigathssrfiplk
Low Complexity Region (SEG)
MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered region (IsUnstruct)
***************************************************HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH*****************
Disordered Region (DISOPRED)
**TDELAKLFSARARR*****LKRKPMALIKKL***************VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS*RFIPLK
Disordered Region (DISEMBL)
MSTDELAKLFSARARRRFQRGLKRKPMALIKK**************EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISPRO)
*STDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGI*ATHS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q945U1	153	40S ribosomal protein S15	N/A	no	1.0	0.771	0.966	3e-61
P31674	154	40S ribosomal protein S15	yes	no	1.0	0.766	0.932	5e-60
O65059	151	40S ribosomal protein S15	N/A	no	1.0	0.781	0.940	1e-59
Q9FY65	150	40S ribosomal protein S15	yes	no	1.0	0.786	0.881	2e-55
Q9FY64	152	40S ribosomal protein S15	no	no	1.0	0.776	0.932	3e-53
Q08112	152	40S ribosomal protein S15	no	no	1.0	0.776	0.932	3e-53
Q9FY66	152	40S ribosomal protein S15	no	no	1.0	0.776	0.822	3e-52
P34737	152	40S ribosomal protein S15	yes	no	1.0	0.776	0.762	4e-50
Q9FIX6	149	40S ribosomal protein S15	no	no	1.0	0.791	0.872	4e-48
Q9UTQ6	154	40S ribosomal protein S15	yes	no	1.0	0.766	0.720	2e-45

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1

 Score =  233 bits (594), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/118 (96%), Positives = 115/118 (97%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           M TDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVP
Sbjct: 36  MGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVP 95

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 96  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Elaeis oleifera (taxid: 80265)

>sp|P31674|RS15_ORYSJ 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2

 Score =  229 bits (583), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 115/118 (97%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVP
Sbjct: 37  MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 96

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 97  EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65059|RS15_PICMA 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1

 Score =  227 bits (579), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/118 (94%), Positives = 115/118 (97%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           M+++EL KLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 34  MTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Picea mariana (taxid: 3335)

>sp|Q9FY65|RS153_ARATH 40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1

 Score =  214 bits (544), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 109/118 (92%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L KLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVP
Sbjct: 33  MSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVP 92

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 93  EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY64|RS154_ARATH 40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1

 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1

 Score =  206 bits (524), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY66|RS152_ARATH 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 107/118 (90%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           M TD+L +LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+P
Sbjct: 35  MPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|P34737|RS15_PODAS 40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 106/118 (89%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           +++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VP
Sbjct: 35  LTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 95  EMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Podospora anserina (taxid: 5145)

>sp|Q9FIX6|RS155_ARATH 40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=3 SV=1

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 108/118 (91%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MS ++L K FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVP
Sbjct: 32  MSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVP 91

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 92  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTQ6|RS15B_SCHPO 40S ribosomal protein S15-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps15b PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 97/118 (82%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           +S ++L  LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+P
Sbjct: 37  LSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILP 96

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct: 97  EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
357521277	154	40S ribosomal protein S15-like protein [	1.0	0.766	0.983	8e-61
255551941	151	40S ribosomal protein S15, putative [Ric	1.0	0.781	0.974	9e-61
255559955	152	40S ribosomal protein S15, putative [Ric	1.0	0.776	0.974	1e-60
313586481	151	40S ribosomal protein S15D [Hevea brasil	1.0	0.781	0.983	2e-60
225432923	151	PREDICTED: 40S ribosomal protein S15-lik	1.0	0.781	0.983	3e-60
388518697	152	unknown [Medicago truncatula]	1.0	0.776	0.974	4e-60
223469631	151	40S ribosomal protein S15-like protein [	1.0	0.781	0.974	4e-60
351725659	155	uncharacterized protein LOC100499657 [Gl	1.0	0.761	0.974	5e-60
351722029	155	uncharacterized protein LOC100499781 [Gl	1.0	0.761	0.974	5e-60
388507654	151	unknown [Lotus japonicus]	1.0	0.781	0.974	6e-60

>gi|357521277|ref|XP_003630927.1| 40S ribosomal protein S15-like protein [Medicago truncatula] gi|355524949|gb|AET05403.1| 40S ribosomal protein S15-like protein [Medicago truncatula] gi|388496760|gb|AFK36446.1| unknown [Medicago truncatula]

 Score =  237 bits (604), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 116/118 (98%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLFSARARRRFQRGL RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 37  MSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 96

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 97  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551941|ref|XP_002517015.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223543650|gb|EEF45178.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 117/118 (99%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLF+ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 34  MSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559955|ref|XP_002520996.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223539833|gb|EEF41413.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 117/118 (99%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLF+ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 95  EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586481|gb|ADR71251.1| 40S ribosomal protein S15D [Hevea brasiliensis]

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/118 (98%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 34  MSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432923|ref|XP_002284241.1| PREDICTED: 40S ribosomal protein S15-like isoform 1 [Vitis vinifera] gi|359477606|ref|XP_003632002.1| PREDICTED: 40S ribosomal protein S15-like isoform 2 [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/118 (98%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 34  MSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518697|gb|AFK47410.1| unknown [Medicago truncatula]

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLFS+RARRRFQRGL RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 35  MSTDELVKLFSSRARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 94

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 95  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223469631|gb|ACM90156.1| 40S ribosomal protein S15-like protein [Jatropha curcas]

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           M+TDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 34  MTTDELVKLFPARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725659|ref|NP_001237868.1| uncharacterized protein LOC100499657 [Glycine max] gi|255625583|gb|ACU13136.1| unknown [Glycine max]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL K+FSARARRRFQRGL RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 38  MSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 97

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 98  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722029|ref|NP_001235950.1| uncharacterized protein LOC100499781 [Glycine max] gi|255626483|gb|ACU13586.1| unknown [Glycine max]

 Score =  234 bits (597), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 116/118 (98%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL K+FSARARRRFQRGL RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP
Sbjct: 38  MSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 97

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 98  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507654|gb|AFK41893.1| unknown [Lotus japonicus]

 Score =  234 bits (597), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/118 (97%), Positives = 115/118 (97%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTDEL KLFSARARRRFQRGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct: 34  MSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVP 93

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 94  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2018324	152	RPS15 "cytosolic ribosomal pro	1.0	0.776	0.932	1.8e-55
TAIR|locus:2184772	152	AT5G09510 [Arabidopsis thalian	1.0	0.776	0.932	1.8e-55
TAIR|locus:2184752	150	AT5G09500 [Arabidopsis thalian	1.0	0.786	0.881	9.2e-52
TAIR|locus:2158382	149	AT5G43640 [Arabidopsis thalian	1.0	0.791	0.872	8.3e-51
TAIR|locus:2184847	152	AT5G09490 [Arabidopsis thalian	1.0	0.776	0.822	3.2e-49
FB|FBgn0034138	148	RpS15 "Ribosomal protein S15"	1.0	0.797	0.813	6.7e-49
UNIPROTKB|G4MYJ0	153	MGG_10370 "40S ribosomal prote	1.0	0.771	0.788	9.8e-48
ASPGD|ASPL0000005393	182	AN5997 [Emericella nidulans (t	1.0	0.648	0.771	1.2e-47
ZFIN|ZDB-GENE-030131-9092	145	rps15 "ribosomal protein S15"	1.0	0.813	0.771	2e-47
UNIPROTKB|F1NNC3	153	RPS15 "40S ribosomal protein S	1.0	0.771	0.779	2.6e-47

TAIR|locus:2018324 RPS15 "cytosolic ribosomal protein S15" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct:    35 MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVP 94

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    95 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184772 AT5G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 110/118 (93%), Positives = 113/118 (95%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVP
Sbjct:    35 MSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVP 94

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    95 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2184752 AT5G09500 [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 104/118 (88%), Positives = 109/118 (92%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MSTD+L KLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVP
Sbjct:    33 MSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVP 92

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:    93 EMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2158382 AT5G43640 [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 103/118 (87%), Positives = 108/118 (91%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MS ++L K FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVP
Sbjct:    32 MSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVP 91

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:    92 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

TAIR|locus:2184847 AT5G09490 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 97/118 (82%), Positives = 107/118 (90%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             M TD+L +LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+P
Sbjct:    35 MPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMP 94

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:    95 EMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

FB|FBgn0034138 RpS15 "Ribosomal protein S15" [Drosophila melanogaster (taxid:7227)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 96/118 (81%), Positives = 106/118 (89%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             M  ++L +L  +RARRRF RGLKRKPMALIKKLRKAK+EAPP EKPE V+THLRNMIIVP
Sbjct:    31 MPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVP 90

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EM GSIIGVYNGK F QVE+KPEMIGHYL EF+++YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    91 EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|G4MYJ0 MGG_10370 "40S ribosomal protein S15" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 93/118 (78%), Positives = 107/118 (90%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             +++D+L  +  ARARRR  RGLKRKPM LIKKLRKAK+EA P EKP+ V+THLR+MI+VP
Sbjct:    36 LTSDQLRDVVHARARRRINRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVP 95

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGS+IG+Y+GK FNQVEIKPEM+GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    96 EMIGSVIGIYSGKEFNQVEIKPEMVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000005393 AN5997 [Emericella nidulans (taxid:162425)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/118 (77%), Positives = 107/118 (90%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             +S+++L  +  ARARRRF RGLKRKPM LIKKLRKAK+EA P EKP+ V+THLR+MI+VP
Sbjct:    65 LSSEQLRDVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVP 124

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EMIGS+IG+Y+GK FNQ+E+KPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   125 EMIGSVIGIYSGKEFNQIEVKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 182

GO:0005730 "nucleolus" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-9092 rps15 "ribosomal protein S15" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 91/118 (77%), Positives = 108/118 (91%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+M+I+P
Sbjct:    28 MSYEQLMQLYSARQRRRLNRGLRRKQQSLLKRLRKAKKEAPPMEKPEVVKTHLRDMVILP 87

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    88 EMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NNC3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 92/118 (77%), Positives = 108/118 (91%)

Query:     1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
             MS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+P
Sbjct:    36 MSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILP 95

Query:    61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
             EM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    96 EMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8ZWL4	RS19_PYRAE	No assigned EC number	0.5338	0.9915	0.7405	yes	no
C5A282	RS19_THEGJ	No assigned EC number	0.5254	0.9661	0.8571	yes	no
Q9YF74	RS19_AERPE	No assigned EC number	0.5175	0.9491	0.7777	yes	no
O65059	RS15_PICMA	No assigned EC number	0.9406	1.0	0.7814	N/A	no
Q975I5	RS19_SULTO	No assigned EC number	0.4830	0.9745	0.8214	yes	no
C6A163	RS19_THESM	No assigned EC number	0.4830	0.9661	0.8571	yes	no
Q9XVP0	RS15_CAEEL	No assigned EC number	0.6949	1.0	0.7814	yes	no
Q18GF3	RS19_HALWD	No assigned EC number	0.4789	0.9661	0.8142	yes	no
Q08112	RS151_ARATH	No assigned EC number	0.9322	1.0	0.7763	no	no
P34737	RS15_PODAS	No assigned EC number	0.7627	1.0	0.7763	yes	no
A3DNB1	RS19_STAMF	No assigned EC number	0.5254	0.9915	0.8181	yes	no
O94715	RS15A_SCHPO	No assigned EC number	0.7203	1.0	0.7712	yes	no
O28358	RS19_ARCFU	No assigned EC number	0.4745	0.9152	0.8120	yes	no
Q5JDH3	RS19_PYRKO	No assigned EC number	0.5254	0.9661	0.8571	yes	no
P54018	RS19_METJA	No assigned EC number	0.5169	1.0	0.7763	yes	no
P31674	RS15_ORYSJ	No assigned EC number	0.9322	1.0	0.7662	yes	no
Q56K10	RS15_BOVIN	No assigned EC number	0.7711	1.0	0.8137	yes	no
Q01855	RS15_YEAST	No assigned EC number	0.6694	0.9745	0.8098	yes	no
Q5RDI7	RS15_PONAB	No assigned EC number	0.7796	1.0	0.8137	no	no
O59422	RS19_PYRHO	No assigned EC number	0.5508	0.9661	0.8636	yes	no
P62842	RS15_MESAU	No assigned EC number	0.7796	1.0	0.8137	N/A	no
P62843	RS15_MOUSE	No assigned EC number	0.7796	1.0	0.8137	yes	no
B1L708	RS19_KORCO	No assigned EC number	0.4915	0.9661	0.8636	yes	no
P62841	RS15_HUMAN	No assigned EC number	0.7796	1.0	0.8137	yes	no
P62846	RS15_CHICK	No assigned EC number	0.7796	1.0	0.8137	yes	no
P62844	RS15_PIG	No assigned EC number	0.7796	1.0	0.8137	yes	no
P62845	RS15_RAT	No assigned EC number	0.7796	1.0	0.8137	yes	no
Q4JB44	RS19_SULAC	No assigned EC number	0.4745	0.9745	0.8214	yes	no
Q8U002	RS19_PYRFU	No assigned EC number	0.5508	0.9661	0.8636	yes	no
B9LSS3	RS19_HALLT	No assigned EC number	0.4745	0.9745	0.8156	yes	no
B6YSL7	RS19_THEON	No assigned EC number	0.5254	0.9661	0.8571	yes	no
O26114	RS19_METTH	No assigned EC number	0.4661	1.0	0.8676	yes	no
P15010	RS19_HALSA	No assigned EC number	0.4491	0.9745	0.8214	yes	no
Q9UTQ6	RS15B_SCHPO	No assigned EC number	0.7203	1.0	0.7662	yes	no
P20342	RS15_XENLA	No assigned EC number	0.7457	1.0	0.8137	N/A	no
A5UL85	RS19_METS3	No assigned EC number	0.4661	1.0	0.8676	yes	no
Q3IMY4	RS19_NATPD	No assigned EC number	0.4830	0.9745	0.8214	yes	no
P20284	RS19_HALMA	No assigned EC number	0.4661	0.9745	0.8214	yes	no
Q945U1	RS15_ELAOL	No assigned EC number	0.9661	1.0	0.7712	N/A	no
P70066	RS15_XIPMA	No assigned EC number	0.7457	1.0	0.8137	N/A	no
Q9V1T9	RS19_PYRAB	No assigned EC number	0.5508	0.9661	0.8636	yes	no
P51429	RS15_NAEGR	No assigned EC number	0.5593	1.0	0.9833	N/A	no
B0R660	RS19_HALS3	No assigned EC number	0.4491	0.9745	0.8214	yes	no
Q9FY65	RS153_ARATH	No assigned EC number	0.8813	1.0	0.7866	yes	no
Q9FY64	RS154_ARATH	No assigned EC number	0.9322	1.0	0.7763	no	no
Q54N17	RS15_DICDI	No assigned EC number	0.6947	0.7966	0.6527	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020133001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (185 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)	•			•	•	•	•		0.984
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)	•			•	•	•	•		0.972
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)	•			•	•	•	•		0.963
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)	•			•	•	•	•		0.952
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)	•			•	•	•	•		0.948
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.924
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.918
	GSVIVG00024035001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.899
	GSVIVG00001285001	SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (246 aa)	•			•	•	•			0.895
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•	•	•	•		0.892

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
PTZ00096	143	PTZ00096, PTZ00096, 40S ribosomal protein S15; Pro	5e-73
TIGR01025	135	TIGR01025, rpsS_arch, ribosomal protein S19(archae	4e-65
PRK04038	134	PRK04038, rps19p, 30S ribosomal protein S19P; Prov	5e-52
pfam00203	81	pfam00203, Ribosomal_S19, Ribosomal protein S19	1e-38
COG0185	93	COG0185, RpsS, Ribosomal protein S19 [Translation,	2e-36
PRK00357	92	PRK00357, rpsS, 30S ribosomal protein S19; Reviewe	6e-13
TIGR01050	92	TIGR01050, rpsS_bact, ribosomal protein S19, bacte	9e-12
CHL00050	92	CHL00050, rps19, ribosomal protein S19	9e-10

>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional

 Score =  213 bits (544), Expect = 5e-73
 Identities = 83/116 (71%), Positives = 99/116 (85%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           +  +EL +LF AR RRR  RG+KRK   L+KKLRKAK+   PGEKP+ V+THLR+MIIVP
Sbjct: 28  LPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRDMIIVP 87

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIP 116
           EM+GS++GVYNGK FN VEIKPEMIGHYL EFSI+YKPV+HG+PG+GATHSSRFIP
Sbjct: 88  EMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKPVRHGKPGVGATHSSRFIP 143

Length = 143

>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein S19(archaeal)/S15(eukaryotic)

 Score =  193 bits (491), Expect = 4e-65
 Identities = 87/118 (73%), Positives = 98/118 (83%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MS +ELAKL  AR RRR +RGL  K   L+KKLRKAK+EAP GEKPE +RTH R+MII+P
Sbjct: 18  MSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILP 77

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+GS +GVYNGK F QVEIKPEMIGHYL EFSI+ KPVKHGRPGIGAT SS F+PLK
Sbjct: 78  EMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGRPGIGATRSSMFVPLK 135

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 135

>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional

 Score =  160 bits (406), Expect = 5e-52
 Identities = 67/118 (56%), Positives = 88/118 (74%), Gaps = 3/118 (2%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MS +E A+L  AR RR  +RGL  +   L++K+RKA+RE    +K   +RTH+R+MII+P
Sbjct: 20  MSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKKGRVIRTHVRDMIILP 76

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+G  I VYNGK F +VEI PEMIGHYL EF+++ K V+HG PGIGAT SS+F+PLK
Sbjct: 77  EMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPGIGATRSSKFVPLK 134

Length = 134

>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19

 Score =  124 bits (313), Expect = 1e-38
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 20  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
           R LK+ P   +K LRK K+E    EK E ++T  R   I+PEM+G  I VYNGK F  V 
Sbjct: 1   RSLKKGPFVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVY 59

Query: 80  IKPEMIGHYLAEFSISYKPVKH 101
           I PEM+GH L EF+ + K V H
Sbjct: 60  ITPEMVGHKLGEFAPTRKFVGH 81

Length = 81

>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

 Score =  118 bits (299), Expect = 2e-36
 Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 14  ARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGK 73
            RR  ++G       L+KK+RKAK       K +P++T  R   I+PEM+G  I V+NGK
Sbjct: 1   MRRSLKKGPFVDK-HLLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGK 55

Query: 74  TFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 111
            F  VEI  EM+GH L EF+ +   V HG  GI AT S
Sbjct: 56  KFVPVEITEEMVGHKLGEFAPTRTFVGHGADGIKATRS 93

Length = 93

>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed

 Score = 59.4 bits (145), Expect = 6e-13
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+ P     L+KK+ KA      G+K + ++T  R   I+PE +G  I V+NG+   
Sbjct: 3  RSLKKGPFVDGHLLKKVEKANES---GDK-KVIKTWSRRSTILPEFVGLTIAVHNGRKHV 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           V +   M+GH L EF+
Sbjct: 59 PVYVTENMVGHKLGEFA 75

Length = 92

>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle

 Score = 56.2 bits (136), Expect = 9e-12
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+ P     L+KK+ K         K + ++T  R   I+PEMIG  I V+NGK F 
Sbjct: 3  RSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFI 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           V I  +M+GH L EF+
Sbjct: 59 PVYITEDMVGHKLGEFA 75

The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 92

>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19

 Score = 51.1 bits (123), Expect = 9e-10
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+ P     L+KK+ K   +    E+ E + T  R   I+P MIG  I V+NGK   
Sbjct: 3  RSLKKNPFVANHLLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHI 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           + I  +M+GH L EF+
Sbjct: 59 PIYITDQMVGHKLGEFA 75

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PTZ00096	143	40S ribosomal protein S15; Provisional	100.0
TIGR01025	135	rpsS_arch ribosomal protein S19(archaeal)/S15(euka	100.0
PRK04038	134	rps19p 30S ribosomal protein S19P; Provisional	100.0
KOG0898	152	consensus 40S ribosomal protein S15 [Translation,	100.0
COG0185	93	RpsS Ribosomal protein S19 [Translation, ribosomal	100.0
CHL00050	92	rps19 ribosomal protein S19	100.0
TIGR01050	92	rpsS_bact ribosomal protein S19, bacterial/organel	100.0
PF00203	81	Ribosomal_S19: Ribosomal protein S19; InterPro: IP	100.0
PRK00357	92	rpsS 30S ribosomal protein S19; Reviewed	100.0
PLN03147	92	ribosomal protein S19; Provisional	100.0
KOG0899	93	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>PTZ00096 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=1.7e-55  Score=328.07  Aligned_cols=116  Identities=72%  Similarity=1.237  Sum_probs=113.7

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||+|||++|+||||||++.||+...+..|+++++++++.+++++|+++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus        28 m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~~~~~~~~~k~~~ikT~~R~~~IlP~mVG~ti~VyNGK~fv~V~I  107 (143)
T PTZ00096         28 LPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEI  107 (143)
T ss_pred             CCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHHhhhcccccCCcceeEecccCeeCccccCcEEEEEcCCeeEeeEe
Confidence            89999999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcee
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIP  116 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvp  116 (118)
                      +||||||||||||+||+++.||+||+|||+||+|||
T Consensus       108 ~~eMIGhkLGEFa~Trk~~~Hg~pGigATrSS~fvp  143 (143)
T PTZ00096        108 KPEMIGHYLGEFSITYKPVRHGKPGVGATHSSRFIP  143 (143)
T ss_pred             ccCeeceeeccccCCcccccCCCCCcCcccccccCC
Confidence            999999999999999999999999999999999998

>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic)

Probab=100.00  E-value=7.4e-55  Score=322.22  Aligned_cols=118  Identities=74%  Similarity=1.154  Sum_probs=112.8

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      |+++||++|+||||||++.|++...+..|+++++++++....++++++|+||+|+|+|+|+|||++|+||||++|++|+|
T Consensus        18 m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k~~~~~~~g~k~~~IKT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I   97 (135)
T TIGR01025        18 MSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEI   97 (135)
T ss_pred             CCHHHHHHHcCcccCcccccCCchhhHHHHHHHHHHHhccccccCCcceEEeccCCeeChhhcCcEEEEEcCCeeEEEEe
Confidence            89999999999999999999999999999999998876555567789999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +||||||||||||+||+++.|++||+|||+||+|||||
T Consensus        98 ~~eMVGhklGEFa~Trk~~~Hg~pGigAt~ss~fvplK  135 (135)
T TIGR01025        98 KPEMIGHYLGEFSITRKPVKHGRPGIGATRSSMFVPLK  135 (135)
T ss_pred             cCCeeceeecccccCcccCcCCCCCcCccccccceeCc
Confidence            99999999999999999999999999999999999997

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.

>PRK04038 rps19p 30S ribosomal protein S19P; Provisional

Probab=100.00  E-value=1.4e-53  Score=315.07  Aligned_cols=115  Identities=58%  Similarity=0.982  Sum_probs=108.2

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||+|||++|+||||||++.|+....+..|+++++++++.   ++++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus        20 m~~~~~~~l~~ar~RRsl~KGp~~~~~~LlkKi~k~~~~---~~k~~~ikT~sR~s~IlP~~VG~ti~VyNGk~fv~v~I   96 (134)
T PRK04038         20 MSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKKGRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEI   96 (134)
T ss_pred             CCHHHHHHHcchhhhhhhccCCCcchHHHHHHHHHHHhc---ccCCcceeEeccCCeeChhhcCeEEEEecCceeEeEEe
Confidence            899999999999999999999988788899999987653   33457899999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +||||||||||||+||+++.|++||+|||+||+|||||
T Consensus        97 ~~eMVGhklGEFa~Trk~~~Hg~pGigAT~sS~fvplK  134 (134)
T PRK04038         97 VPEMIGHYLGEFALTRKRVQHGSPGIGATRSSKFVPLK  134 (134)
T ss_pred             ccCccceeeccccCCcccCcCCCCCcCccccccceeCc
Confidence            99999999999999999999999999999999999997

>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-52  Score=311.28  Aligned_cols=118  Identities=84%  Similarity=1.321  Sum_probs=116.6

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||.+|+++|+|||+||+++||+|++|..|+++||++++++++.+||++|+||.|||+|+|+|||..|+|||||.|.+|+|
T Consensus        35 ms~~~~~~l~~ar~rrR~~RGL~~k~~~liKklrkAkk~A~~~ekpe~VkTHlR~mII~PEMvGs~VGVyNGK~FnqvEi  114 (152)
T KOG0898|consen   35 MSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKLRKAKKEAPPMEKPEVVKTHLRNMIIVPEMVGSMVGVYNGKTFNQVEI  114 (152)
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHhhcCcccCcHHHHHHhhcceeeHhhhcceEEEecCcccceeec
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +|||||||||||++|+||++|++||+|||+||.|+|||
T Consensus       115 KPEMIGhYL~eFsiTykpvkHgrpgigat~SsrfipLk  152 (152)
T KOG0898|consen  115 KPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK  152 (152)
T ss_pred             cHHHHhhhhhhccccccccccCCCCCCcccccccccCC
Confidence            99999999999999999999999999999999999997

>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-42  Score=241.58  Aligned_cols=90  Identities=49%  Similarity=0.754  Sum_probs=81.9

Q ss_pred             hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+|+   .|++++++++..   +. +++|+||||+|+|||+|||++|+||||++|+||+|+||||||||||||+
T Consensus         1 ~~RSlkkGp~~~~~Ll~Kv~~~~~~---~~-k~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV~I~~eMVGHkLGEFap   76 (93)
T COG0185           1 MRRSLKKGPFVDKHLLKKVRKAKES---GK-KKPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEITEEMVGHKLGEFAP   76 (93)
T ss_pred             CCcccccCccccHHHHHHHHHHHhc---cC-CCcceeeecccEechhhcCcEEEEEcCceEEEEEechhhcceecccccc
Confidence            5788999988   678888877652   32 3899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCCCCCCCC
Q 033505           95 SYKPVKHGRPGIGATHS  111 (118)
Q Consensus        95 Trk~~~h~~~g~gat~s  111 (118)
                      ||++++|+.+|++||+|
T Consensus        77 TR~~~~H~~~~~~atr~   93 (93)
T COG0185          77 TRTFVGHGADGIKATRS   93 (93)
T ss_pred             eecccccCCCCcCcccC
Confidence            99999999999999986

>CHL00050 rps19 ribosomal protein S19

Probab=100.00  E-value=5.2e-37  Score=214.62  Aligned_cols=81  Identities=37%  Similarity=0.555  Sum_probs=71.5

Q ss_pred             hhcCCCCChhh---HHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~~---ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+||.   |+++++++..    ..++++|+||+|+|+|+|+|||++|+||||++|++|+|+||||||||||||+
T Consensus         1 M~RS~wKgpfv~~~Ll~ki~~~~~----~~~~~~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I~~eMVGhklGEFa~   76 (92)
T CHL00050          1 MTRSLKKNPFVANHLLKKIEKLNT----KEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAP   76 (92)
T ss_pred             CCCccccCcccCHHHHHHHHHhhh----ccCCccceEEccccEeChhhcCcEEEEEcCceEEEEEEccccccceeeeEee
Confidence            78999999994   5555555432    2235789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCC
Q 033505           95 SYKPVKHG  102 (118)
Q Consensus        95 Trk~~~h~  102 (118)
                      ||++++|+
T Consensus        77 TRk~~~h~   84 (92)
T CHL00050         77 TRNFRGHA   84 (92)
T ss_pred             eecccccc
Confidence            99999995

>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle

Probab=100.00  E-value=2.7e-36  Score=211.02  Aligned_cols=83  Identities=39%  Similarity=0.606  Sum_probs=72.7

Q ss_pred             hhcCCCCChhh---HHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~~---ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+||.   |+++++++..    ..++++|+||||+|+|+|+|||++|+||||++|++|+|++|||||||||||+
T Consensus         1 MsRS~wKgpfv~~~Ll~ki~k~~~----~~~~~~ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I~~~MvGhklGEFa~   76 (92)
T TIGR01050         1 MSRSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHhhc----ccCCCceEEEecccEEChHHCCcEEEEEcCceEEEEEeCcCeecceeeeeec
Confidence            78999999994   5565555431    2346789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCC
Q 033505           95 SYKPVKHGRP  104 (118)
Q Consensus        95 Trk~~~h~~~  104 (118)
                      ||+++.|++.
T Consensus        77 TRk~~~h~~~   86 (92)
T TIGR01050        77 TRTFKGHAKS   86 (92)
T ss_pred             eeeccccccC
Confidence            9999999753

the Archaea may be designated S15 or S19.

>PF00203 Ribosomal_S19: Ribosomal protein S19; InterPro: IPR002222 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.3e-36  Score=206.56  Aligned_cols=81  Identities=51%  Similarity=0.838  Sum_probs=75.5

Q ss_pred             cCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeeeeecc
Q 033505           20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV   99 (118)
Q Consensus        20 Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Trk~~   99 (118)
                      ||+||+|+.+...++++++.+..+++ ++++||+|+|+|+|+|||++|+||||++|++|+|++|||||||||||+||+++
T Consensus         1 Rs~~K~~~~~~~~l~k~~~~~~~~~k-~~ikt~~R~s~IlP~~vg~~i~VyNGk~f~~i~I~~~miG~klGEF~~Trk~~   79 (81)
T PF00203_consen    1 RSLWKGPFVLKKLLKKIKKLNPSKKK-KVIKTHSRSSTILPEMVGKTIGVYNGKKFVPIKITPEMIGHKLGEFAPTRKPV   79 (81)
T ss_dssp             CCSSSSTHHHHHHHHHHHHHHCTTST-SEEEESSTTSBBSGTGTTSEEEEESSSSEEEEECSSTGTSSBCGCGSSSSSTS
T ss_pred             CCCCcccchhHHHHHHHHHHhhcCCC-cceEEEeCCCCcccceeceEEEEecCceEEEEEecccccceEeeceeeecccC
Confidence            89999999999999888766555554 89999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 033505          100 KH  101 (118)
Q Consensus       100 ~h  101 (118)
                      +|
T Consensus        80 ~H   81 (81)
T PF00203_consen   80 KH   81 (81)
T ss_dssp             CT
T ss_pred             CC
Confidence            88

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The small subunit ribosomal proteins can be categorised as: primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S19 contains 88-144 amino acid residues. In Escherichia coli, S19 is known to form a complex with S13 that binds strongly to 16S ribosomal RNA. Experimental evidence [] has revealed that S19 is moderately exposed on the ribosomal surface, and is designated a secondary rRNA binding protein. S19 belongs to a family of ribosomal proteins [, ] that includes: eubacterial S19; algal and plant chloroplast S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and eukaryotic S15 ('rig' protein).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2XZM_S 2XZN_S 2ZKQ_s 3U5C_P 3O30_I 3U5G_P 3O2Z_I 3IZB_R 1S1H_S 1XMO_S ....

>PRK00357 rpsS 30S ribosomal protein S19; Reviewed

Probab=100.00  E-value=4.3e-36  Score=210.07  Aligned_cols=82  Identities=34%  Similarity=0.558  Sum_probs=72.3

Q ss_pred             hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+|+   .|+++++++..   .+ ++++|+||+|+|+|+|+|||++|+||||++|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgp~v~~~Ll~ki~k~~~---~~-~~~~ikT~sR~s~IlP~~vg~~i~VyNGk~fv~v~I~~emiGhklGEFa~   76 (92)
T PRK00357          1 MARSLKKGPFVDGHLLKKVEKANE---SG-DKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHHhh---cc-CCCceEEeeccCCcCHHHCCceEEEEcCCeeEeEEeccCccceeeeeecc
Confidence            7899999999   46666665542   22 35789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 033505           95 SYKPVKHGR  103 (118)
Q Consensus        95 Trk~~~h~~  103 (118)
                      ||++++|+.
T Consensus        77 Tr~~~~H~~   85 (92)
T PRK00357         77 TRTFRGHAA   85 (92)
T ss_pred             eeccccccc
Confidence            999999974

>PLN03147 ribosomal protein S19; Provisional

Probab=100.00  E-value=3.1e-34  Score=200.62  Aligned_cols=79  Identities=19%  Similarity=0.308  Sum_probs=68.3

Q ss_pred             cCCCCChhhHHH--HHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeeeee
Q 033505           20 RGLKRKPMALIK--KLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYK   97 (118)
Q Consensus        20 Rs~~k~~~~ll~--~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Trk   97 (118)
                      ||+||+||....  ++.++.+      ...+|+||||+|+|+|+|||++|+||||++|++|+|+||||||||||||+||+
T Consensus         1 RS~wKGPfv~~~L~k~~~~~~------~~~~iktwSR~S~IlP~~vg~ti~VyNGk~fv~v~It~~MVGhKlGEFa~Trk   74 (92)
T PLN03147          1 QAIWKGAFVDAFLARIKKKRD------LLLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRK   74 (92)
T ss_pred             CCCccCccccHHHHHHHHHHh------cCCceeEEcccceECHHHcCCEEEEeCCCceEEEEecCCccceeeeccccEec
Confidence            899999995332  3433322      12589999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 033505           98 PVKHGRP  104 (118)
Q Consensus        98 ~~~h~~~  104 (118)
                      ++.|...
T Consensus        75 ~~~hk~~   81 (92)
T PLN03147         75 RRPHRAI   81 (92)
T ss_pred             ccCCCCc
Confidence            9999776

>KOG0899 consensus Mitochondrial/chloroplast ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-34  Score=198.80  Aligned_cols=84  Identities=30%  Similarity=0.498  Sum_probs=73.8

Q ss_pred             hhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeeee
Q 033505           17 RFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY   96 (118)
Q Consensus        17 ~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Tr   96 (118)
                      +|+||+||+||+.-..+++.....    .+-+|+||+|+++|||+|||.+|.|||||+|++|+|+|+|||||||||++||
T Consensus         9 Sm~RSvwK~P~V~~~~~rk~~~~~----~~~pikt~sRasTIlP~~Vg~~~~IhNGk~~v~vkIte~mVGHKlGEFapTr   84 (93)
T KOG0899|consen    9 SMTRSVWKGPFVVKFLLRKIEKLK----GKAPIKTWSRASTILPTMVGHTFAIHNGKEHVPVKITEDMVGHKLGEFAPTR   84 (93)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHhc----CCCceeehhhhcchhhhhhCceEEEecCcceeeEEeecchhccccccccchh
Confidence            399999999997666666554321    1358999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCC
Q 033505           97 KPVKHGRP  104 (118)
Q Consensus        97 k~~~h~~~  104 (118)
                      |...|.+.
T Consensus        85 k~~~~akt   92 (93)
T KOG0899|consen   85 KFFGHAKT   92 (93)
T ss_pred             hhhccccC
Confidence            99999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
3iz6_R	154	Localization Of The Small Subunit Ribosomal Protein		4e-61
2zkq_s	145	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-45
3izb_R	142	Localization Of The Small Subunit Ribosomal Protein		2e-42
3zey_I	152	High-resolution Cryo-electron Microscopy Structure		3e-40
3j0l_S	125	Core Of Mammalian 80s Pre-Ribosome In Complex With		4e-31
2xzm_S	144	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-30
1s1h_S	80	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-30
3j20_T	132	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-30
3jyv_S	71	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-25
3fih_S	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-08
2gy9_S	87	Structure Of The 30s Subunit Of A Pre-Translocation		3e-08
1p6g_S	91	Real Space Refined Coordinates Of The 30s Subunit F		3e-08
1vs5_S	92	Crystal Structure Of The Bacterial Ribosome From Es		3e-08
1qkf_A	92	Solution Structure Of The Ribosomal Protein S19 Fro		2e-06
1fka_S	93	Structure Of Functionally Activated Small Ribosomal		2e-06
1pns_S	80	Crystal Structure Of A Streptomycin Dependent Ribos		3e-06
3mr8_S	78	Recognition Of The Amber Stop Codon By Release Fact		5e-06
3fic_S	79	T. Thermophilus 70s Ribosome In Complex With Mrna,		6e-06
3bbn_S	92	Homology Model For The Spinach Chloroplast 30s Subu		6e-06

>pdb|3IZ6|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 154

Iteration: 1
 Score =  229 bits (583), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 110/118 (93%), Positives = 115/118 (97%)
Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVP
Sbjct: 37  MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 96
Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 97  EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>pdb|2ZKQ|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145

Iteration: 1
 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 108/118 (91%)
Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+P
Sbjct: 28  MSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILP 87
Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 88  EMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

>pdb|3IZB|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 142

Iteration: 1
 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 3/118 (2%)
Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MST++  KL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVP
Sbjct: 28  MSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVP 87
Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct: 88  EMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142

>pdb|3ZEY|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 152

Iteration: 1
 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 92/118 (77%)
Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           ++ +E   L  ARARRR  R   R+   L+K+LR+AK+    GEKP+ V+THLR+++I P
Sbjct: 35  LTEEEFKALVHARARRRMNRHADRRAPVLLKRLREAKKNVKAGEKPKAVKTHLRDVVITP 94
Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+GS++G+YNG+ FN VEIK EMIGHYL EFS++YKPV HGRPG GATHSSRFIPLK
Sbjct: 95  EMVGSVVGIYNGRQFNAVEIKGEMIGHYLGEFSLTYKPVAHGRPGFGATHSSRFIPLK 152

>pdb|3J0L|S Chain S, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 125

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 77/101 (76%)
Query: 3   TDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEM 62
           +DELA LF A+ RRR +RG+  K    + K+R++K + P GEKP PV+TH R+MI++PE+
Sbjct: 25  SDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPEL 84
Query: 63  IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 103
           +G I+GVYNGK F  VE+K +MIG YLAEF+++YKP  HG+
Sbjct: 85  VGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGK 125

>pdb|2XZM|S Chain S, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 144

Iteration: 1
 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 3   TDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEM 62
           +DELA LF A+ RRR +RG+  K    + K+R++K + P GEKP PV+TH R+MI++PE+
Sbjct: 35  SDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPEL 94
Query: 63  IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 101
           +G I+GVYNGK F  VE+K +MIG YLAEF+++YKP  H
Sbjct: 95  VGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTH 133

>pdb|1S1H|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 80

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1  RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 80 IKPEMIGHYLAEFSISYKPV 99
          I+PEM+GHYL EFSI+Y PV
Sbjct: 61 IRPEMLGHYLGEFSITYTPV 80

>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 132

Iteration: 1
 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 86/118 (72%), Gaps = 4/118 (3%)
Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MS +ELA+LF AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+P
Sbjct: 19  MSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILP 74
Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG+GAT SS F+ +K
Sbjct: 75  EMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132

>pdb|3JYV|S Chain S, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 71

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 58/71 (81%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1  RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 80 IKPEMIGHYLA 90
          I+PEM+GHYL 
Sbjct: 61 IRPEMLGHYLG 71

>pdb|3FIH|S Chain S, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 79

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1  RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59
Query: 80 IKPEMIGHYLAEFS 93
          +  EM+GH L EF+
Sbjct: 60 VTDEMVGHKLGEFA 73

>pdb|2GY9|S Chain S, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2  RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 80 IKPEMIGHYLAEFS 93
          +  EM+GH L EF+
Sbjct: 61 VTDEMVGHKLGEFA 74

>pdb|1P6G|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2  RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 80 IKPEMIGHYLAEFS 93
          +  EM+GH L EF+
Sbjct: 61 VTDEMVGHKLGEFA 74

>pdb|1VS5|S Chain S, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 3  RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 61
Query: 80 IKPEMIGHYLAEFS 93
          +  EM+GH L EF+
Sbjct: 62 VTDEMVGHKLGEFA 75

>pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein S19 From Thermus Thermophilus Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 49  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 103
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 30  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 84

>pdb|1FKA|S Chain S, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 93

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 49  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 103
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 31  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 85

>pdb|1PNS|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 80

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+        L K       GEK   ++T  R   IVPEM+G  I VYNGK    V 
Sbjct: 2  RSLKKGVFVDDHLLEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60
Query: 80 IKPEMIGHYLAEFS 93
          I   M+GH L EF+
Sbjct: 61 ITENMVGHKLGEFA 74

>pdb|3MR8|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 78

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 33 LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 92
          L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13 LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 93 S 93
          +
Sbjct: 72 A 72

>pdb|3FIC|S Chain S, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 79

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 33 LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 92
          L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13 LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 93 S 93
          +
Sbjct: 72 A 72

>pdb|3BBN|S Chain S, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 18 FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQ 77
            R LK+ P      LRK ++     EK E + T  R   I+P MIG  I ++NG+    
Sbjct: 1  MTRSLKKNPFVANHLLRKIEKLNKKAEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHLP 59
Query: 78 VEIKPEMIGHYLAEFS 93
          + I   M+GH L EF+
Sbjct: 60 IYITDRMVGHKLGEFA 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	7e-65
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	1e-58
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	5e-54
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	2e-12
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	6e-12
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	9e-12
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	2e-11

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s 1s1h_S 3jyv_S* Length = 154

 Score =  192 bits (490), Expect = 7e-65
 Identities = 110/118 (93%), Positives = 115/118 (97%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MSTD+L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVP
Sbjct: 37  MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 96

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 97  EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S* Length = 142

 Score =  176 bits (448), Expect = 1e-58
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 3/118 (2%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           MST++  KL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVP
Sbjct: 28  MSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVP 87

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
           EMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct: 88  EMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S Length = 144

 Score =  164 bits (418), Expect = 5e-54
 Identities = 56/109 (51%), Positives = 79/109 (72%)

Query: 1   MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
           + +DELA LF A+ RRR +RG+  K    + K+R++K + P GEKP PV+TH R+MI++P
Sbjct: 33  LISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIP 92

Query: 61  EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGAT 109
           E++G I+GVYNGK F  VE+K +MIG YLAEF+++YKP  HG+ G    
Sbjct: 93  ELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAAGG 141

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S* 1p6g_S 1p87_S 2aw7_S ... Length = 92

 Score = 56.0 bits (136), Expect = 6e-12
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+ P     L+KK+ KA      G+K +P+RT  R   I P MIG  I V+NG+   
Sbjct: 3  RSLKKGPFIDLHLLKKVEKAVES---GDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHV 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           V +  EM+GH L EF+
Sbjct: 59 PVFVTDEMVGHKLGEFA 75

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 92

 Score = 55.6 bits (135), Expect = 9e-12
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+ P     L++K+ K  ++    EK E + T  R   I+P MIG  I ++NG+   
Sbjct: 3  RSLKKNPFVANHLLRKIEKLNKK---AEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHL 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           + I   M+GH L EF+
Sbjct: 59 PIYITDRMVGHKLGEFA 75

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ... Length = 93

 Score = 54.8 bits (133), Expect = 2e-11
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
          R LK+       L++K+ +   +   GEK   ++T  R   IVPEM+G  I VYNGK   
Sbjct: 3  RSLKKGVFVDDHLLEKVLELNAK---GEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHV 58

Query: 77 QVEIKPEMIGHYLAEFS 93
           V I   M+GH L EF+
Sbjct: 59 PVYITENMVGHKLGEFA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	100.0
3j20_T	132	30S ribosomal protein S19P; archaea, archaeal, KIN	100.0
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	100.0
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	100.0
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	100.0
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	100.0
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	100.0
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	100.0

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*

Probab=100.00  E-value=6.6e-54  Score=318.23  Aligned_cols=115  Identities=69%  Similarity=1.176  Sum_probs=102.7

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||+|||++|+||||||+++||++.++..|++++|++++++++++++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus        28 ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~I  107 (142)
T 3u5c_P           28 MSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEI  107 (142)
T ss_dssp             TCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCBCCGGGTTCEEEEESSSSEEEEEC
T ss_pred             CCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCEeChhHCCCEEEEEcCCeeEEEec
Confidence            89999999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +||||||||||||+||++++|++||+   +||+|||||
T Consensus       108 t~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK  142 (142)
T 3u5c_P          108 RPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK  142 (142)
T ss_dssp             CGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred             ccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence            99999999999999999999999999   999999997

>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-54  Score=318.09  Aligned_cols=114  Identities=56%  Similarity=0.901  Sum_probs=92.7

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||+|||++|+||||||++.||++..+..|+++++++++..    ++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus        19 ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~I   94 (132)
T 3j20_T           19 MSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEI   94 (132)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTCEEEEECSSSEEEEEC
T ss_pred             CCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCcEEEEECCCeeeeeec
Confidence            6889999999999999999999878889999999987543    478999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +||||||||||||+||++++|++||+|||+||+|||||
T Consensus        95 t~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK  132 (132)
T 3j20_T           95 KPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK  132 (132)
T ss_dssp             CGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred             ccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence            99999999999999999999999999999999999997

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s

Probab=100.00  E-value=3.4e-57  Score=339.34  Aligned_cols=118  Identities=93%  Similarity=1.431  Sum_probs=88.2

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      ||+|||++|+||||||+++||++.++..|++++|++++++++++++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus        37 ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~I  116 (154)
T 3iz6_R           37 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEI  116 (154)
T ss_dssp             ---------------------CCCCSCCCCSSCCSCCCSHHHHHTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESS
T ss_pred             CCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcccCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEe
Confidence            78999999999999999999999999999999999988776777788999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  118 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk  118 (118)
                      +|||||||||||++||++++|++||+|||+||+|||||
T Consensus       117 t~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK  154 (154)
T 3iz6_R          117 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  154 (154)
T ss_dssp             SSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred             ccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence            99999999999999999999999999999999999997

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S

Probab=100.00  E-value=4.6e-51  Score=303.64  Aligned_cols=112  Identities=50%  Similarity=0.963  Sum_probs=99.1

Q ss_pred             CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505            1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI   80 (118)
Q Consensus         1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I   80 (118)
                      |++|||++|+||||||++.|+....+..|+++++++++++++++++++|+||||+|+|+|+|||++|+|||||+|++|+|
T Consensus        33 m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKTwsR~stIlPemVG~ti~VyNGK~fvpV~I  112 (144)
T 2xzm_S           33 LISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEV  112 (144)
T ss_dssp             SSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEECCTTCBCCGGGTTCEEEEECSSSEEEEEC
T ss_pred             CCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEEeccCcCcCHhHCCcEEEEecCCeeeeeee
Confidence            78999999999999999999999878899999999998777778889999999999999999999999999999999999


Q ss_pred             cCCcceeeeeeeeeeeecccCCCCCCCCCCCc
Q 033505           81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSS  112 (118)
Q Consensus        81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss  112 (118)
                      +||||||||||||+||++++|++||+|||+||
T Consensus       113 teeMVGHKLGEFa~TRk~~~H~~pGigat~s~  144 (144)
T 2xzm_S          113 KFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK  144 (144)
T ss_dssp             CGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred             cccccceeeeceeeecccCccCCCCcCcccCC
Confidence            99999999999999999999999999999997

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=5.3e-40  Score=228.75  Aligned_cols=86  Identities=31%  Similarity=0.519  Sum_probs=76.1

Q ss_pred             hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+||   .|+++++++++   +++ +++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~---~~~-~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3bbn_S            1 MTRSLKKNPFVANHLLRKIEKLNK---KAE-KEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP   76 (92)
T ss_dssp             CCCSCSSCCCCCHHHHHHHHTTTT---TTC-CCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred             CCCccccCcccCHHHHHHHHHHHh---cCC-CcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence            7899999999   46777765543   233 6899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCCCC
Q 033505           95 SYKPVKHGRPGIG  107 (118)
Q Consensus        95 Trk~~~h~~~g~g  107 (118)
                      ||++++|++....
T Consensus        77 Trk~~~H~~~~~~   89 (92)
T 3bbn_S           77 TLNFRGHAKNDNK   89 (92)
T ss_dssp             SSCCSSSCCCCCC
T ss_pred             eecccccCCCccc
Confidence            9999999876544

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...

Probab=100.00  E-value=1e-39  Score=227.65  Aligned_cols=84  Identities=36%  Similarity=0.574  Sum_probs=68.6

Q ss_pred             hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+||   .|+++++++++.   + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~~---~-~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~   76 (93)
T 3a1p_B            1 MPRSLKKGVFVDDHLLEKVLELNAK---G-EKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP   76 (93)
T ss_dssp             --------CCCCHHHHHHHHHHHHH---T-CCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred             CCCccccCcccCHHHHHHHHHHHhc---C-CCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence            7899999999   588888877653   2 36899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCC
Q 033505           95 SYKPVKHGRPG  105 (118)
Q Consensus        95 Trk~~~h~~~g  105 (118)
                      ||++++|++..
T Consensus        77 Trk~~~H~~~~   87 (93)
T 3a1p_B           77 TRTYRGHGKEA   87 (93)
T ss_dssp             CSCCCCTTGGG
T ss_pred             eecccccCccc
Confidence            99999997643

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...

Probab=100.00  E-value=9.4e-40  Score=227.49  Aligned_cols=82  Identities=39%  Similarity=0.593  Sum_probs=70.5

Q ss_pred             hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505           18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI   94 (118)
Q Consensus        18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~   94 (118)
                      |+||+||+||   .|+++++++++.   + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~KGpfv~~~Llkki~k~~~~---~-~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3i1m_S            1 MPRSLKKGPFIDLHLLKKVEKAVES---G-DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP   76 (92)
T ss_dssp             --CCCCSSCCCCHHHHHHHHHHHHT---C-CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred             CCcccccCcCcCHHHHHHHHHHHhc---C-CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence            7899999999   678888877653   2 36899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 033505           95 SYKPVKHGR  103 (118)
Q Consensus        95 Trk~~~h~~  103 (118)
                      ||+++.|++
T Consensus        77 TRk~~~H~~   85 (92)
T 3i1m_S           77 TRTYRGHAA   85 (92)
T ss_dssp             CCCCC----
T ss_pred             EecccccCc
Confidence            999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d2gy9s1	79	d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherich	2e-25
d2uubs1	80	d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus t	6e-24

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

 Score = 89.0 bits (221), Expect = 2e-25
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+ P   +  L+K ++    G+K  P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1  RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59

Query: 80 IKPEMIGHYLAEFSI 94
          +  EM+GH L EF+ 
Sbjct: 60 VTDEMVGHKLGEFAP 74

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

 Score = 85.5 bits (212), Expect = 6e-24
 Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
          R LK+        L K       GEK   ++T  R   IVPEM+G  I VYNGK    V 
Sbjct: 2  RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60

Query: 80 IKPEMIGHYLAEFSI 94
          I   M+GH L EF+ 
Sbjct: 61 ITENMVGHKLGEFAP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d2uubs1	80	Ribosomal protein S19 {Thermus thermophilus [TaxId	100.0
d2gy9s1	79	Ribosomal protein S19 {Escherichia coli [TaxId: 56	100.0

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-36  Score=205.58  Aligned_cols=76  Identities=37%  Similarity=0.569  Sum_probs=65.5

Q ss_pred             hcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeee
Q 033505           19 QRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS   95 (118)
Q Consensus        19 ~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~T   95 (118)
                      .||+||+||   .|++++.++.   ..+ ++++|+||+|+|+|+|+|||++|+|||||+|++|+|++|||||||||||+|
T Consensus         1 ~RS~~Kgpfv~~~Llkki~~~~---~~~-~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It~eMVGhklGEFa~T   76 (80)
T d2uubs1           1 PRSLKKGVFVDDHLLEKVLELN---AKG-EKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPT   76 (80)
T ss_dssp             CCCCCSSCCCCHHHHHHHHTTT---SSC-CCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECCGGGTTSBSGGGSCC
T ss_pred             CCCcccCcCccHHHHHHHHHHH---hcC-CCCcEeEeccccEechHHcceEEEEEeCCeeEeEEeccCcccceeeccccc
Confidence            399999998   4555554432   223 468899999999999999999999999999999999999999999999999


Q ss_pred             eec
Q 033505           96 YKP   98 (118)
Q Consensus        96 rk~   98 (118)
                      |++
T Consensus        77 R~f   79 (80)
T d2uubs1          77 RTY   79 (80)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            975

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9e-37  Score=205.75  Aligned_cols=75  Identities=40%  Similarity=0.602  Sum_probs=67.1

Q ss_pred             cCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeeee
Q 033505           20 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY   96 (118)
Q Consensus        20 Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Tr   96 (118)
                      ||+||+||   .|++++.++....    ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus         1 RS~~KGpfv~~~Llkki~k~~~~~----~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It~eMVGhklGEFa~TR   76 (79)
T d2gy9s1           1 RSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR   76 (79)
T ss_dssp             CCCTTCCCCCTTTTSHHHHGGGGS----CCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCSS
T ss_pred             CCCccCccccHHHHHHHHHHHhcC----CCCcEEEEecccccChHHhCcEEEEEeCCeeEEEEeccCccceeeecccccc
Confidence            89999998   5777777665432    3578999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 033505           97 KP   98 (118)
Q Consensus        97 k~   98 (118)
                      ++
T Consensus        77 ~f   78 (79)
T d2gy9s1          77 TY   78 (79)
T ss_dssp             CC
T ss_pred             cC
Confidence            75