Citrus Sinensis ID: 033533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MATPPVPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE
Secondary Structure (PSIPRED)
cccccccEEEcccEEEEEEEEcccccccccccccccccccccccccccEEEccEEEcccccccEEEEEccccccccEEccccEEEEccccccEEEEEEccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEHEEEEEEEEcccccccccccccccccccccccccHHHHcccccEcccccccEEEEEEccccccccccccccEEEEccccccEEEEEEccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MATPPVPVVASLAKVKLFsimpssssssrsrpshslkskpalcapvkqeVEVGIMCescngkgwlvcdfcggqktnvkaqnnriyrrcptcravgyvlcskckvfkcvtfpnyddge
Flexible Loop (DISEMBL)
MATPPVPVVASLAKVKLFSIMPssssssrsrpshslkskpalcapVKQEVEVGIMCESCNGKGWLVCDFCGGQKTnvkaqnnriyrrcPTCRAVGYVLcskckvfkcvtfpnyddge
Low Complexity Region (SEG)
MATPPVPVVASLAKVKLFSIMpssssssrsrpshslkskpALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE
Disordered region (IsUnstruct)
**************VKL************************LCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNY****
Disordered Region (DISOPRED)
****PVP*VASLAKVKLFSIM*****************************EVGIMCESCNGKGWLVCDFCGGQKT****Q*NRIYRRCPTCRAVGYVLCSKCKVFKCVT*P******
Disordered Region (DISEMBL)
MATPPVPVVASLAKVKLFSI*******************PALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE
Disordered Region (DISPRO)
**TPPVPVVASLAKVKLFSIMPS**************SKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATPPVPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
P63966	382	Chaperone protein DnaJ 2	yes	no	0.461	0.141	0.338	0.0008
P63967	382	Chaperone protein DnaJ 2	yes	no	0.461	0.141	0.338	0.0008

>sp|P63966|DNAJ2_MYCTU Chaperone protein DnaJ 2 OS=Mycobacterium tuberculosis GN=dnaJ2 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 50  VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVGYVL 98
           V+  ++C+ C GKG       + CD CGG+      Q + +      R CPTCR VG V+
Sbjct: 139 VDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPCPTCRGVGVVI 198

Query: 99  CSKCK 103
              C+
Sbjct: 199 PDPCQ 203

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Mycobacterium tuberculosis (taxid: 1773)

>sp|P63967|DNAJ2_MYCBO Chaperone protein DnaJ 2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=dnaJ2 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 50  VEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRCPTCRAVGYVL 98
           V+  ++C+ C GKG       + CD CGG+      Q + +      R CPTCR VG V+
Sbjct: 139 VDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPCPTCRGVGVVI 198

Query: 99  CSKCK 103
              C+
Sbjct: 199 PDPCQ 203

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycobacterium bovis (taxid: 1765)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
225429842	101	PREDICTED: uncharacterized protein LOC10	0.803	0.930	0.712	3e-34
224121432	121	predicted protein [Populus trichocarpa]	0.846	0.818	0.592	5e-28
449442018	112	PREDICTED: uncharacterized protein LOC10	0.649	0.678	0.740	2e-27
297821739	126	hypothetical protein ARALYDRAFT_481294 [	0.829	0.769	0.585	9e-27
357466565	117	hypothetical protein MTR_3g109170 [Medic	0.880	0.880	0.567	2e-26
30682394	132	chaperone protein dnaJ-related protein [	0.675	0.598	0.644	3e-26
351723979	132	uncharacterized protein LOC100527416 [Gl	0.743	0.659	0.622	9e-26
116782334	116	unknown [Picea sitchensis]	0.837	0.844	0.54	1e-23
168042224	145	predicted protein [Physcomitrella patens	0.623	0.503	0.602	2e-20
357148471	133	PREDICTED: uncharacterized protein LOC10	0.572	0.503	0.544	8e-17

>gi|225429842|ref|XP_002283165.1| PREDICTED: uncharacterized protein LOC100249288 isoform 1 [Vitis vinifera] gi|296081792|emb|CBI20797.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 84/101 (83%), Gaps = 7/101 (6%)

Query: 20  IMPSSSSSSRSRPSHSLKSKPALCAPVKQ---EVEVGIMCESCNGKGWLVCDFCGGQKTN 76
           ++PSSSSS+          KP  CAP++Q   +++VGIMCE CNGKGWL+CDFC GQKTN
Sbjct: 1   MLPSSSSSTMGMRFL----KPPHCAPLQQIQEQIDVGIMCEPCNGKGWLLCDFCKGQKTN 56

Query: 77  VKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE 117
           VKA+NNRIYRRCP+CRA+GYVLCSKCKVFKCVTFPNYDDGE
Sbjct: 57  VKAENNRIYRRCPSCRAIGYVLCSKCKVFKCVTFPNYDDGE 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121432|ref|XP_002330826.1| predicted protein [Populus trichocarpa] gi|222872628|gb|EEF09759.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 79/113 (69%), Gaps = 14/113 (12%)

Query: 19  SIMPSSSSSSRSRPSHSLKS------KPALCAP--------VKQEVEVGIMCESCNGKGW 64
           ++ P+  S  RS PS    +      KP  C+P         +Q+V  GIMCE CNGKGW
Sbjct: 5   TVAPAKISYLRSLPSWPANTTTPRFLKPVNCSPPLQQQVQEEQQQVASGIMCEPCNGKGW 64

Query: 65  LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE 117
           L+CDFC G KTNVKA N R+YRRCP+CRA+GYVLCSKCKVFKCVTFPNY+DGE
Sbjct: 65  LLCDFCKGLKTNVKADNKRLYRRCPSCRAIGYVLCSKCKVFKCVTFPNYNDGE 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442018|ref|XP_004138779.1| PREDICTED: uncharacterized protein LOC101209431 [Cucumis sativus] gi|449499504|ref|XP_004160834.1| PREDICTED: uncharacterized LOC101209431 [Cucumis sativus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 66/77 (85%), Gaps = 1/77 (1%)

Query: 41  ALCAPVKQ-EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLC 99
           A C+P++Q + +  I CE CNGKGW+VCDFC GQKTNVK + NRIYRRCPTCRAVGYVLC
Sbjct: 31  ARCSPIQQVQADSTIDCEPCNGKGWIVCDFCEGQKTNVKVEKNRIYRRCPTCRAVGYVLC 90

Query: 100 SKCKVFKCVTFPNYDDG 116
           S CKVFKCVTFPN++DG
Sbjct: 91  SNCKVFKCVTFPNFNDG 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821739|ref|XP_002878752.1| hypothetical protein ARALYDRAFT_481294 [Arabidopsis lyrata subsp. lyrata] gi|297324591|gb|EFH55011.1| hypothetical protein ARALYDRAFT_481294 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 78/111 (70%), Gaps = 14/111 (12%)

Query: 18  FSIMPSSSSSSRSRPSHSLKSKPALCAPVKQ-----------EVEVGIMCESCNGKGWLV 66
             +MPSS+ S RS   H    KP  C P++Q           + E  I+CE CNGKGWL+
Sbjct: 15  LRLMPSSAPSPRS---HRCLLKPFRCVPLQQQEPQLEQSQQGDDEAVILCEDCNGKGWLI 71

Query: 67  CDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE 117
           CD C GQKTNVK++NNRIYRRCPTC+AVG+VLC KCKVFKCVTFPN +DG+
Sbjct: 72  CDVCNGQKTNVKSENNRIYRRCPTCKAVGFVLCRKCKVFKCVTFPNSEDGD 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466565|ref|XP_003603567.1| hypothetical protein MTR_3g109170 [Medicago truncatula] gi|355492615|gb|AES73818.1| hypothetical protein MTR_3g109170 [Medicago truncatula]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 77/111 (69%), Gaps = 8/111 (7%)

Query: 6   VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWL 65
           +P ++S +  + F + P SS          ++S    C  V  E E  IMC+ CNGKGWL
Sbjct: 12  LPSISSSSHSRSFFVAPYSSK-------QHIRSITIKCVKVDTE-ETNIMCDPCNGKGWL 63

Query: 66  VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDG 116
           VCDFC GQKTNVKA NNRIYRRCP+C+AVGYVLCS CKVFKCVTFP+++D 
Sbjct: 64  VCDFCEGQKTNVKAPNNRIYRRCPSCKAVGYVLCSNCKVFKCVTFPHFNDS 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682394|ref|NP_850052.1| chaperone protein dnaJ-related protein [Arabidopsis thaliana] gi|44917527|gb|AAS49088.1| At2g24395 [Arabidopsis thaliana] gi|62321035|dbj|BAD94100.1| hypothetical protein [Arabidopsis thaliana] gi|330252477|gb|AEC07571.1| chaperone protein dnaJ-related protein [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 70/90 (77%), Gaps = 11/90 (12%)

Query: 39  KPALCAPVK-QEVEVG----------IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRR 87
           KP  C P++ QE ++           I+CE CNGKGWL+CDFC GQKTNVK++NNRIYRR
Sbjct: 39  KPFRCVPLQEQEPQLDQSQQGDDNAVILCEDCNGKGWLLCDFCKGQKTNVKSENNRIYRR 98

Query: 88  CPTCRAVGYVLCSKCKVFKCVTFPNYDDGE 117
           CPTC+AVG+VLC KCKVFKCVTFPN +DG+
Sbjct: 99  CPTCKAVGFVLCRKCKVFKCVTFPNSEDGD 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723979|ref|NP_001235762.1| uncharacterized protein LOC100527416 [Glycine max] gi|255632296|gb|ACU16506.1| unknown [Glycine max]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 71/98 (72%), Gaps = 11/98 (11%)

Query: 21  MPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ 80
           MP   S  ++ P HS  + P          + GI+ E CNG GWLVCDFC GQKTNVKA+
Sbjct: 44  MPWPCSLRQAPPLHSHSTTP----------QAGIVREPCNGTGWLVCDFCNGQKTNVKAE 93

Query: 81  NN-RIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDGE 117
           NN RIYRRCP+C+AVGYVLCSKCKVFKCVTFPN++D E
Sbjct: 94  NNKRIYRRCPSCKAVGYVLCSKCKVFKCVTFPNFNDSE 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782334|gb|ABK22469.1| unknown [Picea sitchensis]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 19  SIMPSSSSSSRSRPSHSLK-SKPALCAPVKQEVE-VGIMCESCNGKGWLVCDFCGGQKTN 76
           + +PS SS S SRP+ + + +  A   P +QEV+  GI+C+ C GKGW+VCDFC GQK N
Sbjct: 15  TALPSPSSWSNSRPAFTQRITCRASALPSQQEVKGAGILCDPCKGKGWVVCDFCEGQKIN 74

Query: 77  VKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNYDDG 116
           V+AQ+ R YRRCP+CRA G+++C +CKV+KC+TFP+  DG
Sbjct: 75  VQAQSKRFYRRCPSCRASGFLICQQCKVYKCLTFPDGKDG 114

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168042224|ref|XP_001773589.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675128|gb|EDQ61627.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 44  APVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCK 103
           AP ++E ++ + C +CNGKG+L+CDFC GQKTNV+ + N+ YRRCP+CRAVG V+C +CK
Sbjct: 72  APAEEEGDMNLPCNTCNGKGFLLCDFCKGQKTNVQVRANKFYRRCPSCRAVGVVICPQCK 131

Query: 104 VFKCVTFPNYDDG 116
           V+KCVTFP+  DG
Sbjct: 132 VYKCVTFPDGVDG 144

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357148471|ref|XP_003574777.1| PREDICTED: uncharacterized protein LOC100830128 [Brachypodium distachyon]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 49  EVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVLCSKCKVFKC 107
           E E  + C+ C G GWL+C FC G+K NVK++++ RIYRRCPTC+A GY+LC++C+V++C
Sbjct: 65  EEEGVVECQECGGAGWLLCGFCKGKKNNVKSESSPRIYRRCPTCKAAGYILCARCRVYRC 124

Query: 108 VTFPNYDD 115
           +TFP   D
Sbjct: 125 ITFPETAD 132

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:504955942	132	AT2G24395 "AT2G24395" [Arabido	0.547	0.484	0.812	4.4e-29
UNIPROTKB|P63966	382	dnaJ2 "Chaperone protein DnaJ	0.512	0.157	0.350	0.00018
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.418	0.263	0.357	0.00024
UNIPROTKB|G4N8Z4	59	MGG_17224 "Uncharacterized pro	0.367	0.728	0.404	0.00045
TAIR|locus:2019479	368	AT1G64500 [Arabidopsis thalian	0.521	0.165	0.359	0.00045
TAIR|locus:2009482	110	AT1G22630 [Arabidopsis thalian	0.384	0.409	0.367	0.00093

TAIR|locus:504955942 AT2G24395 "AT2G24395" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 52/64 (81%), Positives = 60/64 (93%)

Query:    54 IMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKCKVFKCVTFPNY 113
             I+CE CNGKGWL+CDFC GQKTNVK++NNRIYRRCPTC+AVG+VLC KCKVFKCVTFPN 
Sbjct:    65 ILCEDCNGKGWLLCDFCKGQKTNVKSENNRIYRRCPTCKAVGFVLCRKCKVFKCVTFPNS 124

Query:   114 DDGE 117
             +DG+
Sbjct:   125 EDGD 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P63966 dnaJ2 "Chaperone protein DnaJ 2" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 27/77 (35%), Positives = 37/77 (48%)

Query:    43 CAP--VKQ-EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNNRI-----YRRC 88
             CA    KQ  V+  ++C+ C GKG       + CD CGG+      Q + +      R C
Sbjct:   129 CATGVTKQVTVDTAVLCDRCQGKGTNGDSVPIPCDTCGGRGEVQTVQRSLLGQMLTSRPC 188

Query:    89 PTCRAVGYVL---CSKC 102
             PTCR VG V+   C +C
Sbjct:   189 PTCRGVGVVIPDPCQQC 205

GO:0005618 "cell wall" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query:    53 GIMCESCNGKGWLVCDFCGGQKTNVKAQNNR----IYR--RCPTCRAVGYVLCSKC 102
             G  C +C G G ++CD CGG     KA N +    +Y    CP C   G ++C  C
Sbjct:    99 GGSCRNCQGSGAVLCDMCGGTG-KWKALNRKRAKDVYEFTECPNCYGRGKLVCPVC 153

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|G4N8Z4 MGG_17224 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query:    56 CESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVLCSKC 102
             C SC+G G   C  CGG  +++ A+       CP C A G V CS C
Sbjct:     9 CSSCSGTGQCTCLRCGGTGSDIFAECGI----CPHCYARGQVPCSAC 51

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019479 AT1G64500 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00045, P = 0.00045
 Identities = 23/64 (35%), Positives = 29/64 (45%)

Query:    44 APVKQEVEVG-IMCESCNGKGWLVCDFCGG--QKTNVKAQNNRIYRRCPTCRAVGYVLCS 100
             A V++  E G + CE C G  WL C  CGG  +   V A     + RC  C   G + C 
Sbjct:   304 ARVERVGEEGRLTCEGCGGARWLPCFECGGSCKVAAVGAAKGERWERCVKCNENGLIRCP 363

Query:   101 KCKV 104
              C V
Sbjct:   364 VCFV 367

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query:    56 CESCNGKGWLVCDFCGGQKTNVKAQNNRIYRR--CPTCRAVGYVLCSKC 102
             CE+C  KG + C  C G   N K  N  ++ R  C  C+  G   C KC
Sbjct:    51 CETCGAKGAIECPGCKGTGKNKK--NGNMFERWKCFDCQGFGMKSCPKC 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.466    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117        98   0.00091  102 3  11 22  0.48    29
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  132 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.51u 0.07s 10.58t   Elapsed:  00:00:01
  Total cpu time:  10.51u 0.07s 10.58t   Elapsed:  00:00:01
  Start:  Thu May  9 17:31:00 2013   End:  Thu May  9 17:31:01 2013

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032364001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (387 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-05
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-04
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	3e-04
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	0.001
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	0.001
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.001
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.003

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 46  VKQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN---RIYRRCPTCRAVGY 96
           V  EV   + CE+C G G+       VC  CGG  +    Q     RI + CPTC   G 
Sbjct: 149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGG--SGEIYQRGGFFRISQTCPTCGGEGV 206

Query: 97  V--LCSKCK 103
           +   CSKC 
Sbjct: 207 LREPCSKCN 215

Length = 382

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 16/73 (21%)

Query: 46  VKQEVEV--GIMCESCNGKGW------LVCDFCGGQKTNVKAQ-----NNRIYRRCPTCR 92
           V ++V V   ++C+ C+GKG       + CD CGG+      Q          R CPTCR
Sbjct: 130 VTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR 189

Query: 93  AVGYVL---CSKC 102
            VG V+   C +C
Sbjct: 190 GVGEVIPDPCHEC 202

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 49  EVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVLCSK 101
            ++    CE C+G G         C  CGG     ++Q    I   CP CR +G V+ S 
Sbjct: 140 RIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSP 199

Query: 102 CKVFKCV 108
           CK   C 
Sbjct: 200 CK--TCH 204

Length = 366

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 46  VKQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN---RIYRRCPTCRAVGY 96
            +  V   + C +C+G G         C  C G       Q        + CPTC   G 
Sbjct: 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGK 194

Query: 97  VL---CSKCK 103
           ++   C KCK
Sbjct: 195 IIKDPCGKCK 204

Length = 371

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 17/65 (26%)

Query: 46  VKQEVEVGIMCESCNGKG----WLVCDFCGGQKTNVKAQNNRIYRRCPTC--RAVGYV-- 97
           V       I C  C GKG    +  C  CGG    +          C  C    V +   
Sbjct: 46  VDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT---------CDICGDIIVPWEEG 96

Query: 98  LCSKC 102
           LC +C
Sbjct: 97  LCPEC 101

Length = 715

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 56  CESCNGKGWL------VCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCK 103
           C+ C G G         C  CGG     ++Q   +I   CP CR  G V+   C KCK
Sbjct: 147 CDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204

Length = 373

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 56  CESCNGKGWLVCDFCGGQKTNV--KAQNNRIYRRCPTCRAVGYVLC 99
           CE C G  ++ C  C G        A     + RCP C   G V C
Sbjct: 102 CEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 17/76 (22%)

Query: 44  APVKQEVEVGIMCESCNG-------KGWLVCDFCGGQKTNVKAQNNRIY------RRCPT 90
             V+ EV+    CE C+G       K    C  C G    V+AQ   I+      + CPT
Sbjct: 130 EEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGA-VRAQARTIFGVVETQQPCPT 188

Query: 91  CRAVGYVL---CSKCK 103
           CR  G ++   C+ C+
Sbjct: 189 CRGEGQIITDPCTVCR 204

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 47  KQEVEVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVG 95
           + E+     CE+C+G G         C  CGG     + Q       +  + CPTC   G
Sbjct: 137 EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEG 196

Query: 96  YVL---CSKCK 103
            ++   CS CK
Sbjct: 197 KIIKEPCSTCK 207

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.66
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.63
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.86
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.83
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.69
PRK14279	392	chaperone protein DnaJ; Provisional	98.37
PRK14286	372	chaperone protein DnaJ; Provisional	98.32
PRK14301	373	chaperone protein DnaJ; Provisional	98.28
PRK14285	365	chaperone protein DnaJ; Provisional	98.28
PRK10767	371	chaperone protein DnaJ; Provisional	98.26
PRK14284	391	chaperone protein DnaJ; Provisional	98.24
PRK14298	377	chaperone protein DnaJ; Provisional	98.24
PRK14300	372	chaperone protein DnaJ; Provisional	98.24
PRK14295	389	chaperone protein DnaJ; Provisional	98.24
PRK14288	369	chaperone protein DnaJ; Provisional	98.21
PRK14294	366	chaperone protein DnaJ; Provisional	98.19
PRK14296	372	chaperone protein DnaJ; Provisional	98.19
PRK14278	378	chaperone protein DnaJ; Provisional	98.18
PRK14282	369	chaperone protein DnaJ; Provisional	98.16
PRK14291	382	chaperone protein DnaJ; Provisional	98.16
PRK14289	386	chaperone protein DnaJ; Provisional	98.15
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.13
PRK14276	380	chaperone protein DnaJ; Provisional	98.09
PRK14280	376	chaperone protein DnaJ; Provisional	98.09
PRK14277	386	chaperone protein DnaJ; Provisional	98.07
PRK14287	371	chaperone protein DnaJ; Provisional	98.06
PRK14290	365	chaperone protein DnaJ; Provisional	98.05
PRK14281	397	chaperone protein DnaJ; Provisional	98.02
PRK14293	374	chaperone protein DnaJ; Provisional	97.99
PTZ00037	421	DnaJ_C chaperone protein; Provisional	97.99
PRK14297	380	chaperone protein DnaJ; Provisional	97.98
PRK14283	378	chaperone protein DnaJ; Provisional	97.94
KOG2813	406	consensus Predicted molecular chaperone, contains	97.93
PRK14292	371	chaperone protein DnaJ; Provisional	97.75
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.7
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.42
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.29
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	97.07
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.04
PRK14296	372	chaperone protein DnaJ; Provisional	96.93
PRK14300	372	chaperone protein DnaJ; Provisional	96.81
PRK14298	377	chaperone protein DnaJ; Provisional	96.81
PRK14279	392	chaperone protein DnaJ; Provisional	96.8
PRK14285	365	chaperone protein DnaJ; Provisional	96.79
PRK14288	369	chaperone protein DnaJ; Provisional	96.79
PRK14280	376	chaperone protein DnaJ; Provisional	96.78
PRK14286	372	chaperone protein DnaJ; Provisional	96.78
PRK10767	371	chaperone protein DnaJ; Provisional	96.75
PRK14282	369	chaperone protein DnaJ; Provisional	96.71
PRK14278	378	chaperone protein DnaJ; Provisional	96.7
PRK14301	373	chaperone protein DnaJ; Provisional	96.69
PRK14284	391	chaperone protein DnaJ; Provisional	96.66
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.64
PRK14276	380	chaperone protein DnaJ; Provisional	96.64
PRK14297	380	chaperone protein DnaJ; Provisional	96.53
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.48
PRK14294	366	chaperone protein DnaJ; Provisional	96.48
PRK14290	365	chaperone protein DnaJ; Provisional	96.47
PRK14295	389	chaperone protein DnaJ; Provisional	96.47
PRK14277	386	chaperone protein DnaJ; Provisional	96.47
PRK14281	397	chaperone protein DnaJ; Provisional	96.45
PRK14289	386	chaperone protein DnaJ; Provisional	96.44
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.34
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.18
PRK14293	374	chaperone protein DnaJ; Provisional	96.15
PRK14287	371	chaperone protein DnaJ; Provisional	96.12
PRK14292	371	chaperone protein DnaJ; Provisional	96.02
PRK14291	382	chaperone protein DnaJ; Provisional	95.98
PRK14283	378	chaperone protein DnaJ; Provisional	95.82
KOG2813	406	consensus Predicted molecular chaperone, contains	95.62
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.44
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	90.98
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	87.25
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	81.44
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	80.78

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.2e-17  Score=132.64  Aligned_cols=74  Identities=30%  Similarity=0.519  Sum_probs=64.7

Q ss_pred             cceeEeeccceeccccCCCCCCCCCCCCCCCCCCCcccCccccccccccCCCCCCCcCeeeCCCCCCCceEEecc-CCcc
Q 033533            6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-NNRI   84 (117)
Q Consensus         6 ~~v~~l~e~g~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~-g~~~   84 (117)
                      -||++|||+|+|.+||.++|   .                     .....|+.|+|.||++|..||||.+++... +...
T Consensus       206 eeV~~LnE~GkL~~lL~~~p---~---------------------~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~  261 (281)
T KOG2824|consen  206 EEVVRLNEEGKLGKLLKGIP---C---------------------EGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGG  261 (281)
T ss_pred             HHhhhhhhcchHHHHHhcCC---C---------------------CCCCcCCCcCCcceEecCCCCCceeeeeeccCCCc
Confidence            37999999999999999885   1                     356899999999999999999999998733 2356


Q ss_pred             eeeCcccCCcceeeCCCCc
Q 033533           85 YRRCPTCRAVGYVLCSKCK  103 (117)
Q Consensus        85 ~~~Cp~C~G~Glv~Cp~C~  103 (117)
                      +.+|+.||+|||++||.|.
T Consensus       262 ~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  262 VLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             EEECcccCCCCceeCCccC
Confidence            8999999999999999995

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.63  E-value=9.6e-17  Score=119.67  Aligned_cols=71  Identities=24%  Similarity=0.511  Sum_probs=60.8

Q ss_pred             cceeEeeccceeccccCCCCCCCCCCCCCCCCCCCcccCccccccccccCCCCCCCcCeeeCCCCCCCceEEeccC--Cc
Q 033533            6 VPVVASLAKVKLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGIMCESCNGKGWLVCDFCGGQKTNVKAQN--NR   83 (117)
Q Consensus         6 ~~v~~l~e~g~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~g--~~   83 (117)
                      .+|.+|||+|+|.++|..++..                       .....|+.|+|.||++|..|+||.+++..++  ..
T Consensus        75 del~~L~e~G~L~~lL~~~~~~-----------------------~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~  131 (147)
T cd03031          75 EEVLRLNESGELRKLLKGIRAR-----------------------AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAG  131 (147)
T ss_pred             HHHHHHHHcCCHHHHHhhcccc-----------------------cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccc
Confidence            4688999999999999877322                       3557799999999999999999999987653  35


Q ss_pred             ceeeCcccCCcceeeC
Q 033533           84 IYRRCPTCRAVGYVLC   99 (117)
Q Consensus        84 ~~~~Cp~C~G~Glv~C   99 (117)
                      ...+|+.||+|||++|
T Consensus       132 ~~~rC~~Cnengl~~c  147 (147)
T cd03031         132 GFLRCPECNENGLVRC  147 (147)
T ss_pred             cEEECCCCCccccccC
Confidence            6799999999999988

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.86  E-value=5e-09  Score=75.59  Aligned_cols=58  Identities=26%  Similarity=0.578  Sum_probs=50.1

Q ss_pred             ccccCCCCCCCcCeeeCCCCCCCceEEecc-C-CcceeeCcccCCcceeeCCCCccceeE
Q 033533           51 EVGIMCESCNGKGWLVCDFCGGQKTNVKAQ-N-NRIYRRCPTCRAVGYVLCSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~v~C~~C~GSGkv~~~~-g-~~~~~~Cp~C~G~Glv~Cp~C~G~~~~  108 (117)
                      .....|..|+|+|...|..|+|+|.+.... + .....+|+.|+|.|.+.|+.|+|.+-+
T Consensus        39 ~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~   98 (111)
T PLN03165         39 ENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQ   98 (111)
T ss_pred             ccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCCCCEEE
Confidence            456899999999999999999999987543 2 245789999999999999999998875

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.83  E-value=7.1e-09  Score=67.44  Aligned_cols=51  Identities=31%  Similarity=0.810  Sum_probs=39.0

Q ss_pred             CCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee----CCCCccce
Q 033533           56 CESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL----CSKCKVFK  106 (117)
Q Consensus        56 C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~----Cp~C~G~~  106 (117)
                      |+.|+|+|.      ..|+.|+|+|+++...    +. .....|+.|+|.|.++    |+.|+|.+
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            789999999      6999999999987643    22 5688999999999997    99999863

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.3e-08  Score=86.04  Aligned_cols=57  Identities=30%  Similarity=0.708  Sum_probs=49.6

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CC-cceeeCcccCCcceee---CCCCcccee
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~  107 (117)
                      .+...|+.|+|+|.      ++|+.|+|+|++....  +. .....|+.|+|+|.++   |+.|.|.+=
T Consensus       140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~  208 (371)
T COG0484         140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR  208 (371)
T ss_pred             ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence            56789999999977      6999999999987665  54 5678999999999998   999999765

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.37  E-value=5.5e-07  Score=75.75  Aligned_cols=58  Identities=28%  Similarity=0.666  Sum_probs=49.3

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|+++...+. .....|+.|+|.|.++   |+.|.|.+-|
T Consensus       171 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v  238 (392)
T PRK14279        171 TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVT  238 (392)
T ss_pred             eccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEE
Confidence            45689999999997      589999999998765543 4578999999999987   9999997765

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.32  E-value=7.4e-07  Score=74.44  Aligned_cols=58  Identities=33%  Similarity=0.640  Sum_probs=49.1

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|.++...|. ....+|+.|+|.|.++   |+.|.|.+-+
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~  215 (372)
T PRK14286        148 PRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQ  215 (372)
T ss_pred             eccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEE
Confidence            45689999999997      689999999998765543 4577999999999987   9999998765

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=8.5e-07  Score=74.11  Aligned_cols=58  Identities=36%  Similarity=0.791  Sum_probs=48.7

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|++....|. ....+|+.|+|.|.++   |+.|.|.+-|
T Consensus       142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  209 (373)
T PRK14301        142 PKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIV  209 (373)
T ss_pred             eecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCcee
Confidence            45689999999997      589999999998765443 4578999999999986   9999997654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=9.7e-07  Score=73.58  Aligned_cols=58  Identities=29%  Similarity=0.746  Sum_probs=48.4

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|..|+|+|+++...|. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  211 (365)
T PRK14285        144 TRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSL  211 (365)
T ss_pred             eecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEE
Confidence            45689999999996      589999999998764443 4578999999999986   9999997743

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.26  E-value=1.4e-06  Score=72.46  Aligned_cols=58  Identities=29%  Similarity=0.678  Sum_probs=48.3

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...|. ....+|+.|+|.|.++   |+.|.|.+-|
T Consensus       140 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  207 (371)
T PRK10767        140 PTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRV  207 (371)
T ss_pred             eecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceE
Confidence            45689999999996      489999999998765543 4567999999999985   9999997754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.24  E-value=1.2e-06  Score=73.48  Aligned_cols=58  Identities=31%  Similarity=0.682  Sum_probs=48.0

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|.++...|. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  223 (391)
T PRK14284        156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRI  223 (391)
T ss_pred             eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCccee
Confidence            45689999999997      589999999998765443 4567999999999986   9999996543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.24  E-value=1.3e-06  Score=73.26  Aligned_cols=58  Identities=28%  Similarity=0.605  Sum_probs=48.1

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|.++...    +. .....|+.|+|.|.++   |+.|.|.+-|
T Consensus       139 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  210 (377)
T PRK14298        139 PRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV  210 (377)
T ss_pred             EeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence            45689999999997      6899999999987542    11 4578999999999886   9999998765

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.24  E-value=1.6e-06  Score=72.35  Aligned_cols=58  Identities=28%  Similarity=0.689  Sum_probs=48.3

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...|. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       143 ~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  210 (372)
T PRK14300        143 SSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRY  210 (372)
T ss_pred             eeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEE
Confidence            45689999999995      689999999998765443 4567999999999986   9999997654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.24  E-value=1.2e-06  Score=73.61  Aligned_cols=57  Identities=26%  Similarity=0.642  Sum_probs=47.9

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCcccee
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~  107 (117)
                      .+...|..|.|+|.      ..|+.|+|+|.++...+. ....+|+.|+|.|.++   |+.|.|.+=
T Consensus       164 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  230 (389)
T PRK14295        164 TSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGR  230 (389)
T ss_pred             eccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence            45688999999996      689999999998765543 4577999999999987   999999653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.21  E-value=2e-06  Score=71.85  Aligned_cols=58  Identities=29%  Similarity=0.675  Sum_probs=47.7

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.     ..|+.|+|+|.++...|. .....|+.|+|.|.++   |+.|.|.+=|
T Consensus       138 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  204 (369)
T PRK14288        138 QYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI  204 (369)
T ss_pred             EeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence            45679999999996     589999999998765543 4567999999999986   9999997543

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.19  E-value=2.2e-06  Score=71.32  Aligned_cols=58  Identities=34%  Similarity=0.754  Sum_probs=48.4

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|.++...|. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       142 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  209 (366)
T PRK14294        142 QKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRV  209 (366)
T ss_pred             eecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEe
Confidence            45689999999997      589999999998765443 4578999999999986   9999997654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.19  E-value=2.1e-06  Score=71.84  Aligned_cols=58  Identities=22%  Similarity=0.574  Sum_probs=47.2

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|.++...  |.   +...+|+.|+|.|.++   |+.|.|.+-|
T Consensus       147 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v  218 (372)
T PRK14296        147 DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKY  218 (372)
T ss_pred             eeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEE
Confidence            45688999999997      5899999999987543  22   3457999999999987   9999997753

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.18  E-value=2.4e-06  Score=71.54  Aligned_cols=58  Identities=40%  Similarity=0.902  Sum_probs=47.1

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+=|
T Consensus       137 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  208 (378)
T PRK14278        137 DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRV  208 (378)
T ss_pred             EeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeE
Confidence            45689999999996      5899999999976543    22 3467999999999987   9999997643

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.16  E-value=3.1e-06  Score=70.51  Aligned_cols=57  Identities=23%  Similarity=0.505  Sum_probs=46.7

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~  107 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+=
T Consensus       150 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  220 (369)
T PRK14282        150 DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGR  220 (369)
T ss_pred             eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCcee
Confidence            45689999999996      5899999999986542    22 3467999999999986   999999764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.16  E-value=2.7e-06  Score=71.26  Aligned_cols=58  Identities=38%  Similarity=0.770  Sum_probs=47.8

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee--CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL--CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~--Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|+++...+. .....|+.|+|.|.+.  |+.|.|.+-+
T Consensus       154 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v  220 (382)
T PRK14291        154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLV  220 (382)
T ss_pred             eeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceE
Confidence            45689999999996      689999999998765433 4578999999999764  9999997754

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.15  E-value=2.4e-06  Score=71.39  Aligned_cols=58  Identities=29%  Similarity=0.679  Sum_probs=48.5

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+-|
T Consensus       152 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  223 (386)
T PRK14289        152 KKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV  223 (386)
T ss_pred             EeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence            45689999999997      6899999999987543    22 3578999999999986   9999999876

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.13  E-value=3.2e-06  Score=69.67  Aligned_cols=58  Identities=34%  Similarity=0.701  Sum_probs=47.7

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccC----C-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQN----N-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g----~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|..|+|+|.++...+    . ....+|+.|+|.|.++   |+.|.|.+-|
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (354)
T TIGR02349       141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV  212 (354)
T ss_pred             ecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEe
Confidence            45689999999995      68999999999875432    2 3467999999999986   9999998764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.09  E-value=4.2e-06  Score=70.05  Aligned_cols=58  Identities=24%  Similarity=0.551  Sum_probs=47.0

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|.++...    |. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       144 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~  215 (380)
T PRK14276        144 NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE  215 (380)
T ss_pred             eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEE
Confidence            45689999999997      5899999999976542    22 3467999999999986   9999996643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.09  E-value=4.7e-06  Score=69.64  Aligned_cols=58  Identities=28%  Similarity=0.643  Sum_probs=47.0

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|+++...    |. .....|+.|+|.|.++   |+.|.|.+=|
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (376)
T PRK14280        141 PKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV  212 (376)
T ss_pred             eeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence            45689999999996      5899999999976543    21 3467999999999986   9999997744

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.07  E-value=5e-06  Score=69.72  Aligned_cols=58  Identities=28%  Similarity=0.607  Sum_probs=47.3

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...    |. ....+|+.|+|.|.++   |+.|.|.+-|
T Consensus       153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  224 (386)
T PRK14277        153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI  224 (386)
T ss_pred             EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence            45689999999986      6899999999876543    22 3457999999999987   9999997754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.06  E-value=5e-06  Score=69.49  Aligned_cols=58  Identities=28%  Similarity=0.589  Sum_probs=46.8

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|++....    |. .....|+.|+|.|.++   |+.|.|.+-+
T Consensus       136 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  207 (371)
T PRK14287        136 PREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKV  207 (371)
T ss_pred             eeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEE
Confidence            45689999999995      6899999999876543    22 3467999999999986   9999997654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.05  E-value=7.3e-06  Score=68.19  Aligned_cols=58  Identities=26%  Similarity=0.605  Sum_probs=47.2

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.     ..|+.|+|+|+++...  |.   ....+|+.|+|.|.++   |+.|.|.+-+
T Consensus       147 ~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  217 (365)
T PRK14290        147 RRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV  217 (365)
T ss_pred             eecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence            45688999999997     5899999999876543  22   2347999999999886   9999998875

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.02  E-value=6.7e-06  Score=69.25  Aligned_cols=58  Identities=29%  Similarity=0.599  Sum_probs=46.9

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.     ..|+.|+|+|.++...    |. ....+|+.|+|.|.++   |+.|.|.+=|
T Consensus       161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  231 (397)
T PRK14281        161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK  231 (397)
T ss_pred             EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence            45689999999997     5899999999986543    22 3467999999999986   9999996654

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.99  E-value=8.4e-06  Score=68.02  Aligned_cols=58  Identities=31%  Similarity=0.674  Sum_probs=46.8

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...    |. ....+|..|+|.|.++   |+.|.|.+-|
T Consensus       141 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (374)
T PRK14293        141 PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVK  212 (374)
T ss_pred             eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCccc
Confidence            45689999999987      5799999999876543    22 3457999999999985   9999997653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=97.99  E-value=8.5e-06  Score=69.57  Aligned_cols=58  Identities=24%  Similarity=0.723  Sum_probs=46.6

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee-----CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~-----Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.     ..|+.|+|+|.++...  +.   ....+|+.|+|.|.++     |+.|.|.+-|
T Consensus       148 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v  220 (421)
T PTZ00037        148 NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVK  220 (421)
T ss_pred             eccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCccee
Confidence            45689999999997     5899999999865432  21   3467999999999985     9999997765

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.98  E-value=9.8e-06  Score=67.75  Aligned_cols=57  Identities=32%  Similarity=0.633  Sum_probs=46.7

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~  107 (117)
                      .+...|..|.|+|.      ..|+.|+|+|+++...    |. ....+|+.|+|.|.++   |+.|.|.+-
T Consensus       146 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  216 (380)
T PRK14297        146 TRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGK  216 (380)
T ss_pred             eeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeE
Confidence            45689999999996      5899999999876532    22 3578999999999986   999999764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.94  E-value=1.1e-05  Score=67.41  Aligned_cols=58  Identities=28%  Similarity=0.621  Sum_probs=47.3

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|.|+|.      ..|+.|+|+|.++...    |. ....+|..|+|.|..+   |..|.|.+.|
T Consensus       144 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  215 (378)
T PRK14283        144 RHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV  215 (378)
T ss_pred             eeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceee
Confidence            45678999999886      5899999999987543    22 3467999999999985   9999998875

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=5e-06  Score=70.22  Aligned_cols=54  Identities=30%  Similarity=0.708  Sum_probs=40.1

Q ss_pred             cCCCCCCCcCeeeCCCCCCCceEEec-----------------c---------CCcceeeCcccCCcceeeCCCCcccee
Q 033533           54 IMCESCNGKGWLVCDFCGGQKTNVKA-----------------Q---------NNRIYRRCPTCRAVGYVLCSKCKVFKC  107 (117)
Q Consensus        54 ~~C~~C~G~G~v~C~~C~GSGkv~~~-----------------~---------g~~~~~~Cp~C~G~Glv~Cp~C~G~~~  107 (117)
                      ..|..|.|.|.++|+.|+|+|...-.                 +         ++++..+|+.|.|.|++.|.+|+|.+=
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs  267 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS  267 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence            67999999999999999999932100                 0         124567788888888888888887653

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.75  E-value=3e-05  Score=64.49  Aligned_cols=57  Identities=26%  Similarity=0.592  Sum_probs=45.5

Q ss_pred             ccccCCCCCCCcCe-------eeCCCCCCCceEEecc----CC-cceeeCcccCCcceee---CCCCcccee
Q 033533           51 EVGIMCESCNGKGW-------LVCDFCGGQKTNVKAQ----NN-RIYRRCPTCRAVGYVL---CSKCKVFKC  107 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-------v~C~~C~GSGkv~~~~----g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~  107 (117)
                      .+...|..|.|+|.       ..|..|+|+|.++...    |. ....+|+.|+|.|.++   |+.|.|.+=
T Consensus       137 ~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (371)
T PRK14292        137 DRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGR  208 (371)
T ss_pred             EeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceE
Confidence            45688999999985       5899999999876432    22 3457999999999986   999999664

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.70  E-value=3.6e-05  Score=49.95  Aligned_cols=39  Identities=33%  Similarity=0.791  Sum_probs=28.9

Q ss_pred             ccccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcc
Q 033533           51 EVGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVG   95 (117)
Q Consensus        51 ~~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~G   95 (117)
                      .....|..|+|+|+               .+|+.|+|+|+++ .     ..+|+.|+|+|
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-----~~~C~~C~G~g   66 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-----KDPCKTCKGSG   66 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-----SSB-SSSTTSS
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-----CCCCCCCCCcC
Confidence            35578999999998               4899999999987 2     35999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.42  E-value=0.00013  Score=65.69  Aligned_cols=24  Identities=33%  Similarity=0.696  Sum_probs=19.5

Q ss_pred             cCCCCCCCcCe-----eeCCCCCCCceEE
Q 033533           54 IMCESCNGKGW-----LVCDFCGGQKTNV   77 (117)
Q Consensus        54 ~~C~~C~G~G~-----v~C~~C~GSGkv~   77 (117)
                      ..|..|+|+|+     ..|+.|+|+|++.
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~   31 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSD   31 (715)
T ss_pred             ccccccCCCceEeeeeeeccccccccccc
Confidence            46889999988     3699999998863

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00022  Score=60.60  Aligned_cols=40  Identities=30%  Similarity=0.682  Sum_probs=34.9

Q ss_pred             cccCCCCCCCcCe-------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGW-------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~-------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|+|.             .+|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------~~pC~~C~G~G~v~  210 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------KDPCGKCKGKGRVK  210 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------CCCCCCCCCCCeEe
Confidence            5679999999995             5899999999987       35999999999964

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00054  Score=57.68  Aligned_cols=56  Identities=23%  Similarity=0.603  Sum_probs=46.5

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--C----CcceeeCcccCCccee-----eCCCCccce
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--N----NRIYRRCPTCRAVGYV-----LCSKCKVFK  106 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g----~~~~~~Cp~C~G~Glv-----~Cp~C~G~~  106 (117)
                      .....|+.|.|.|.     ..|..|.|+|..+...  +    .+....|..|+|.|..     +|+.|.|.+
T Consensus       125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~  196 (337)
T KOG0712|consen  125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAK  196 (337)
T ss_pred             ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccch
Confidence            56789999999999     3699999999865432  2    2568899999999998     699999965

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.04  E-value=0.0005  Score=61.95  Aligned_cols=55  Identities=33%  Similarity=0.718  Sum_probs=47.2

Q ss_pred             cccCCCCCCCcCe------------------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee-CCCCccce
Q 033533           52 VGIMCESCNGKGW------------------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL-CSKCKVFK  106 (117)
Q Consensus        52 ~~~~C~~C~G~G~------------------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~-Cp~C~G~~  106 (117)
                      ....|.-|+|+|+                        ++|+.|+|.|++..      +..|+.|+|.|.+. |..| |..
T Consensus        17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------~~~c~~c~G~gkv~~c~~c-G~~   89 (715)
T COG1107          17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------YDTCPECGGTGKVLTCDIC-GDI   89 (715)
T ss_pred             eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------EeecccCCCceeEEeeccc-cce
Confidence            4577999999998                        58999999999874      78999999999987 9999 767


Q ss_pred             eEeecCC
Q 033533          107 CVTFPNY  113 (117)
Q Consensus       107 ~~~~~~~  113 (117)
                      .+-|+++
T Consensus        90 ~~~~~~~   96 (715)
T COG1107          90 IVPWEEG   96 (715)
T ss_pred             ecCcccc
Confidence            7777654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.93  E-value=0.00078  Score=56.48  Aligned_cols=39  Identities=28%  Similarity=0.812  Sum_probs=33.2

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  219 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-------KNKCKNCKGKGKYL  219 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-------cccccCCCCceEEE
Confidence            4679999999974               799999999986       35799999999763

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.0011  Score=55.54  Aligned_cols=38  Identities=26%  Similarity=0.717  Sum_probs=30.1

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ...|..|+|+|.+           +|+.|+|.|++.       ..+|+.|+|.|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------CCCCCCCCCceEE
Confidence            4678889888864           688888888875       3478888888886

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.00098  Score=55.97  Aligned_cols=39  Identities=31%  Similarity=0.786  Sum_probs=33.1

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|.|.+               +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  211 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------ESPCPVCSGTGKVR  211 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------CCCCCCCCCccEEE
Confidence            4679999999963               799999999975       34799999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.80  E-value=0.0012  Score=55.81  Aligned_cols=39  Identities=28%  Similarity=0.753  Sum_probs=27.3

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+           +|+.|+|+|+++       ..+|..|+|.|.+.
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~g~v~  239 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-------EDPCEECKGTGVTT  239 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-------CCcCCCCCCCeEEE
Confidence            4567888887763           688888887765       23678888777653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.79  E-value=0.0011  Score=55.46  Aligned_cols=39  Identities=28%  Similarity=0.750  Sum_probs=29.3

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+           +|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  212 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------SNPCKSCKGKGSLK  212 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------CCCCCCCCCCCEEe
Confidence            4578888888753           788888888875       34788888888763

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.79  E-value=0.0013  Score=54.97  Aligned_cols=38  Identities=29%  Similarity=0.815  Sum_probs=27.4

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ...|..|+|+|.+           +|+.|+|+|++.       ..+|+.|+|.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v  204 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------KTPCQACKGKTYI  204 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------cccCccCCCcceE
Confidence            4568888888863           588888888765       2468888887765

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.0012  Score=55.25  Aligned_cols=39  Identities=33%  Similarity=0.877  Sum_probs=33.0

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  213 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------KEKCPTCHGKGKVR  213 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------cCCCCCCCCceEEE
Confidence            4689999999863               799999999976       34799999999863

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.78  E-value=0.0012  Score=55.36  Aligned_cols=38  Identities=32%  Similarity=0.770  Sum_probs=27.4

Q ss_pred             cCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           54 IMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        54 ~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ..|..|+|+|.+           +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  216 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------SNPCKTCGGQGLQE  216 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------cccCCCCCCCcEEe
Confidence            568888888753           688888888765       23688888887764

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.0012  Score=54.93  Aligned_cols=39  Identities=28%  Similarity=0.710  Sum_probs=30.5

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+           +|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  208 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------KDPCKKCHGQGRVE  208 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------CCCCCCCCCCceEe
Confidence            3579999998875           599999998875       34799999988763

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.71  E-value=0.0016  Score=54.32  Aligned_cols=39  Identities=28%  Similarity=0.748  Sum_probs=33.0

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  222 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------GEYCHECGGSGRIR  222 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------CCCCCCCCCceeEE
Confidence            4689999999973               699999999975       34799999999764

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.70  E-value=0.0015  Score=54.83  Aligned_cols=39  Identities=28%  Similarity=0.688  Sum_probs=33.0

Q ss_pred             ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.               .+|+.|+|.|+++       ..+|+.|+|.|.+.
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  209 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------PDPCHECAGDGRVR  209 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------CCCCCCCCCceeEe
Confidence            467999999986               3799999999986       34799999999863

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.69  E-value=0.0013  Score=55.13  Aligned_cols=39  Identities=31%  Similarity=0.829  Sum_probs=29.3

Q ss_pred             ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.           .+|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-------THPCPKCKGSGIVQ  210 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-------CCCCCCCCCCceec
Confidence            357888888876           3688888888875       24688888888763

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.66  E-value=0.0013  Score=55.41  Aligned_cols=38  Identities=32%  Similarity=0.830  Sum_probs=30.0

Q ss_pred             ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ...|..|+|+|.           .+|+.|+|.|+++       ..+|+.|+|.|.+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------TDPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------CCcCCCCCCccee
Confidence            467888888887           4788888888875       2478888888876

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.64  E-value=0.0019  Score=55.30  Aligned_cols=42  Identities=29%  Similarity=0.708  Sum_probs=34.5

Q ss_pred             cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|.|.               .+|+.|+|+|+++..     ..+|+.|+|.|.+.
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~  221 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----SKKCKNCSGKGVKK  221 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----cccCCcCCCcceee
Confidence            3568999999994               389999999998742     35899999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.64  E-value=0.0016  Score=54.67  Aligned_cols=39  Identities=31%  Similarity=0.838  Sum_probs=32.9

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  216 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------KEPCQTCHGTGHEK  216 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------cCCCCCCCCceEEE
Confidence            4689999999863               699999999986       34799999999863

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.53  E-value=0.0021  Score=53.83  Aligned_cols=39  Identities=33%  Similarity=0.824  Sum_probs=32.8

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|+.|+|.|++.       ..+|..|+|.|.+.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  218 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-------EDPCNKCHGKGKVR  218 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-------CCCCCCCCCCeEEE
Confidence            4679999999864               799999999976       34899999999753

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.48  E-value=0.0023  Score=52.82  Aligned_cols=39  Identities=33%  Similarity=0.806  Sum_probs=33.1

Q ss_pred             ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.               .+|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------CCCCCCCCCCcEec
Confidence            578999999985               4799999999986       24799999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.48  E-value=0.0023  Score=53.38  Aligned_cols=39  Identities=31%  Similarity=0.723  Sum_probs=30.1

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|.|.+           +|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------VSPCKTCHGQGRVR  210 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------CcCCCCCCCceEee
Confidence            3578889888863           699999988875       34788998888763

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.47  E-value=0.0028  Score=52.83  Aligned_cols=40  Identities=35%  Similarity=0.855  Sum_probs=33.6

Q ss_pred             cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|.|.               .+|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  218 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------EEKCPRCNGTGTVV  218 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------cCCCCCCCCceeEE
Confidence            3568999999995               4899999999975       35899999999863

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.47  E-value=0.0026  Score=53.68  Aligned_cols=39  Identities=26%  Similarity=0.598  Sum_probs=28.8

Q ss_pred             ccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.           .+|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~~~  232 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-------DDPCLVCKGSGRAK  232 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-------ccCCCCCCCCceEe
Confidence            467888888875           3788888888875       24688888888753

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.47  E-value=0.0024  Score=53.64  Aligned_cols=39  Identities=28%  Similarity=0.778  Sum_probs=33.1

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|.|.+               +|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  225 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------TDPCNKCGGTGRIR  225 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------cCCCCCCCCCcEEe
Confidence            4689999999863               699999999986       34799999999873

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0027  Score=53.58  Aligned_cols=40  Identities=35%  Similarity=0.804  Sum_probs=33.7

Q ss_pred             cccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|.|.               .+|+.|+|+|++.       ..+|+.|+|.|.+.
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  232 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------KDRCPACYGEGIKQ  232 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------CCCCCCCCCCccEe
Confidence            4568999999996               3699999999986       34799999999874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.44  E-value=0.0025  Score=53.44  Aligned_cols=40  Identities=28%  Similarity=0.760  Sum_probs=33.5

Q ss_pred             cccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|+|.+               +|+.|+|.|++.       ..+|+.|+|.|.+.
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  224 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------KKKCKKCGGEGIVY  224 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------CcCCCCCCCCcEEe
Confidence            35789999999874               699999999876       34799999999863

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.34  E-value=0.0047  Score=44.65  Aligned_cols=34  Identities=32%  Similarity=0.733  Sum_probs=25.9

Q ss_pred             cCCCCCCCcCe------------eeCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           54 IMCESCNGKGW------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        54 ~~C~~C~G~G~------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ..|..|+|+|+            ..|+.|+|+|++          .|+.|.|+|.+
T Consensus        53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~----------~C~~C~G~G~~   98 (111)
T PLN03165         53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL----------TCTTCQGSGIQ   98 (111)
T ss_pred             cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee----------eCCCCCCCEEE
Confidence            47888888776            368888888762          48888888875

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.18  E-value=0.0034  Score=48.95  Aligned_cols=27  Identities=30%  Similarity=0.709  Sum_probs=20.2

Q ss_pred             cccCCCCCCCcCee-----eCCCCCCCceEEe
Q 033533           52 VGIMCESCNGKGWL-----VCDFCGGQKTNVK   78 (117)
Q Consensus        52 ~~~~C~~C~G~G~v-----~C~~C~GSGkv~~   78 (117)
                      ....|+.|+|+|++     +|+.|+|+|++..
T Consensus        98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             cCCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            35678888888875     3888888887653

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.15  E-value=0.0043  Score=51.87  Aligned_cols=38  Identities=26%  Similarity=0.702  Sum_probs=32.3

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ...|..|+|+|.+               +|+.|+|.|++.       ..+|..|+|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------EDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------ccCCCCCCCCccc
Confidence            4679999999973               699999999976       3479999999986

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.12  E-value=0.0045  Score=51.88  Aligned_cols=39  Identities=33%  Similarity=0.770  Sum_probs=33.2

Q ss_pred             ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.               .+|+.|+|+|++.       ..+|..|+|.|.+.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  208 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------KQKCATCGGKGKVR  208 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------cccCCCCCCeeEEe
Confidence            467999999986               3799999999976       34799999999875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.02  E-value=0.0058  Score=50.92  Aligned_cols=39  Identities=31%  Similarity=0.750  Sum_probs=33.0

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+               +|..|+|.|+..       ..+|+.|+|.|.+.
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  210 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------TDPCTVCRGRGRTL  210 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------CCCCCCCCCceEEe
Confidence            5789999999974               599999999975       35899999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=95.98  E-value=0.0074  Score=50.68  Aligned_cols=37  Identities=32%  Similarity=0.863  Sum_probs=24.4

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCccee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYV   97 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv   97 (117)
                      ...|..|+|+|.+           +|+.|+|+|.+        ...|..|+|.|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------~~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------REPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------ccCCCCCCCCceE
Confidence            4567777777753           67777777742        2367777777765

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.82  E-value=0.0075  Score=50.51  Aligned_cols=39  Identities=31%  Similarity=0.723  Sum_probs=32.7

Q ss_pred             ccCCCCCCCcCee---------------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL---------------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v---------------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|.|.+               +|+.|+|+|+..       ..+|..|+|.|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~g~v~  216 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------EKPCSNCHGKGVVR  216 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------CCCCCCCCCceeec
Confidence            4679999999884               599999999975       34799999999863

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0058  Score=52.03  Aligned_cols=37  Identities=32%  Similarity=0.839  Sum_probs=29.2

Q ss_pred             cccCCCCCCCcCeeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|+|..+|+.|+|.|+          .+|.+|.|.|.+.
T Consensus       233 t~~~C~~C~G~G~~~C~tC~grG~----------k~C~TC~gtgsll  269 (406)
T KOG2813|consen  233 THDLCYMCHGRGIKECHTCKGRGK----------KPCTTCSGTGSLL  269 (406)
T ss_pred             ccchhhhccCCCcccCCcccCCCC----------cccccccCcccee
Confidence            446788888888888888888766          4899999999865

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.44  E-value=0.013  Score=45.70  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             eeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|+.|+|+|++...     ..+|+.|+|.|.+.
T Consensus        99 ~~~C~~C~G~G~~i~~-----~~~C~~C~G~G~v~  128 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRR-----QRECDTCAGTGRFR  128 (186)
T ss_pred             CCcCCCCCCeeEEecC-----CCCCCCCCCccEEe
Confidence            5799999999998742     25899999999874

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.98  E-value=0.15  Score=43.17  Aligned_cols=41  Identities=37%  Similarity=0.807  Sum_probs=30.6

Q ss_pred             ccCCCCCCCcCe----------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW----------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~----------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|.|+|.                .+|..|+|+|..+..     ..+|+.|+|.+.+.
T Consensus       143 ~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~-----kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  143 APKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL-----KDRCKTCSGAKVVR  199 (337)
T ss_pred             CCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc-----cccCcccccchhhh
Confidence            346888888887                578888888886422     45888888888763

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=0.3  Score=40.00  Aligned_cols=55  Identities=31%  Similarity=0.636  Sum_probs=42.8

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEecc--CCcceeeCcccCCcceee---CCCCccce
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQ--NNRIYRRCPTCRAVGYVL---CSKCKVFK  106 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~--g~~~~~~Cp~C~G~Glv~---Cp~C~G~~  106 (117)
                      .....|..|.|.|.      ..|..|+|.|++....  ..... .|..|++.|.+.   |..|.|-.
T Consensus       162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~  227 (288)
T KOG0715|consen  162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAG  227 (288)
T ss_pred             EeecccccccCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcch
Confidence            45578999999998      5999999999765432  22222 699999999997   88888866

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=81.44  E-value=0.76  Score=37.31  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             cccCCCCCCCcCeeeCCCCCCCceEEecc
Q 033533           52 VGIMCESCNGKGWLVCDFCGGQKTNVKAQ   80 (117)
Q Consensus        52 ~~~~C~~C~G~G~v~C~~C~GSGkv~~~~   80 (117)
                      ...++..-.|.+.++|+.|.|+|++-+..
T Consensus        26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq   54 (238)
T PF07092_consen   26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ   54 (238)
T ss_pred             ccCccccccCCCCCcCCCCcCCccCCccc
Confidence            44678888999999999999999987543

The function of this family is unknown.

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=80.78  E-value=1.7  Score=26.91  Aligned_cols=28  Identities=32%  Similarity=0.756  Sum_probs=16.3

Q ss_pred             eeCCCCCCCceEEeccCC----c--ceeeCcccCC
Q 033533           65 LVCDFCGGQKTNVKAQNN----R--IYRRCPTCRA   93 (117)
Q Consensus        65 v~C~~C~GSGkv~~~~g~----~--~~~~Cp~C~G   93 (117)
                      ++|++| |+..+......    .  .++.|..|+.
T Consensus         4 kPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    4 KPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             cCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence            589999 77665543311    1  4556666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 15/73 (20%)

Query: 46  VKQEVEVGIMCESCNGKG-----WLVCDFCGGQKTNVKAQNN-----RIYRRCPTCRAVG 95
            K  +   I+C+ C G+G        C  C GQ      +       R    C  C   G
Sbjct: 31  AKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTG 90

Query: 96  YVL-----CSKCK 103
            ++     C  C 
Sbjct: 91  DIIDPKDRCKSCN 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 16  KLFSIMPSSSSSSRSRPSHSLKSKPALCAPVKQEVEVGI--M--CESCNGKGWLVCDFCG 71
           +L++     +  + SR    LK + AL   ++    V I  +       GK W+  D C 
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGS----GKTWVALDVCL 172

Query: 72  GQKTNVKAQNNRIY----RRCPTCRAV 94
             K      + +I+    + C +   V
Sbjct: 173 SYKV-QCKMDFKIFWLNLKNCNSPETV 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.83
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.8
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.26
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.03
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.85
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.23
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.13
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.02
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.5
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.37

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.83  E-value=3.7e-09  Score=68.67  Aligned_cols=58  Identities=28%  Similarity=0.599  Sum_probs=47.7

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCccee---eCCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYV---LCSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv---~Cp~C~G~~~~  108 (117)
                      .....|..|+|+|.      .+|+.|+|+|+++...+. ....+|+.|+|.|.+   .|+.|.|.+-+
T Consensus         9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A            9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             ccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            46689999999996      689999999998754343 345799999999999   59999997654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=7.9e-09  Score=70.84  Aligned_cols=58  Identities=28%  Similarity=0.667  Sum_probs=48.5

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.      ..|+.|+|+|++....|. ....+|+.|+|.|.++   |+.|.|.+=+
T Consensus        26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   93 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQA   93 (104)
T ss_dssp             SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSSSSCSEE
T ss_pred             eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCCCCeeEE
Confidence            46789999999984      789999999998655444 3467999999999995   9999997755

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.26  E-value=4.9e-07  Score=70.47  Aligned_cols=58  Identities=28%  Similarity=0.709  Sum_probs=46.4

Q ss_pred             ccccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCcceee-----CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYVL-----CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv~-----Cp~C~G~~~~  108 (117)
                      .+...|..|+|+|.     ..|+.|+|+|++....  +.   .....|+.|+|.|.++     |+.|.|.+-+
T Consensus        36 ~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           36 NKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVE  108 (248)
T ss_dssp             EEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             eEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceE
Confidence            45679999999996     7899999999876432  22   3467899999999765     9999997654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.03  E-value=3.9e-06  Score=54.15  Aligned_cols=39  Identities=31%  Similarity=0.750  Sum_probs=33.4

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+           +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~G~~~   77 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------SSBCGGGTTSSEEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------CCcCCCCCCeEEEe
Confidence            4689999999974           799999999976       34899999999874

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=1.1e-05  Score=54.99  Aligned_cols=39  Identities=31%  Similarity=0.747  Sum_probs=33.5

Q ss_pred             ccCCCCCCCcCee-----------eCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGWL-----------VCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~v-----------~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.+           +|+.|+|+|+++       ..+|+.|+|.|.+.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------CCcCCCCCCeeEEE
Confidence            4689999999963           899999999986       35899999999874

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.23  E-value=0.00014  Score=56.54  Aligned_cols=41  Identities=32%  Similarity=0.675  Sum_probs=33.5

Q ss_pred             ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|.               .+|+.|+|+|+++..     ..+|+.|+|.|.+.
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----KDRCKSCNGKKVEN  109 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----TSBCSSSTTSCEEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc-----CCCCcccCCCceEe
Confidence            478999999985               379999999987632     35899999999864

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.13  E-value=0.00025  Score=44.03  Aligned_cols=28  Identities=32%  Similarity=0.681  Sum_probs=20.1

Q ss_pred             cccCCCCCCCcCe---eeCCCCCCCceEEec
Q 033533           52 VGIMCESCNGKGW---LVCDFCGGQKTNVKA   79 (117)
Q Consensus        52 ~~~~C~~C~G~G~---v~C~~C~GSGkv~~~   79 (117)
                      ...+|..|+|+|.   .+|+.|+|+|.+...
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            4567888888887   478888888776543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.02  E-value=0.00037  Score=43.28  Aligned_cols=26  Identities=23%  Similarity=0.634  Sum_probs=16.5

Q ss_pred             ccCCCCCCCcCe---eeCCCCCCCceEEe
Q 033533           53 GIMCESCNGKGW---LVCDFCGGQKTNVK   78 (117)
Q Consensus        53 ~~~C~~C~G~G~---v~C~~C~GSGkv~~   78 (117)
                      ...|+.|+|+|.   .+|+.|+|+|++..
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEE
Confidence            346777777776   36666666666654

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.50  E-value=0.00071  Score=41.95  Aligned_cols=27  Identities=30%  Similarity=0.730  Sum_probs=21.4

Q ss_pred             eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           65 LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        65 v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      .+|+.|+|+|++.       ..+|+.|+|.|++.
T Consensus        10 ~~C~~C~GsG~~i-------~~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREE-------PEPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEET-------TEECTTTTTSSEEE
T ss_pred             ccCcCCcccccCC-------CCcCCCCCCcEEEE
Confidence            5788999998875       25888888888764

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.37  E-value=0.0022  Score=39.69  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=23.8

Q ss_pred             eeeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           64 WLVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        64 ~v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ..+|+.|+|+|++.       ..+|+.|+|.|+++
T Consensus         9 ~~~C~~C~GsG~~~-------~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            9 EVACPKCERAGEIE-------GTPCPACSGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSSEET-------TEECTTTTTSSEEE
T ss_pred             cccCCCCcceeccC-------CCCCccCCCCccEE
Confidence            46999999999974       36899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.91
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.89
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.92
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.72
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	93.8

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=5.8e-10  Score=72.21  Aligned_cols=58  Identities=28%  Similarity=0.628  Sum_probs=48.6

Q ss_pred             ccccCCCCCCCcCe------eeCCCCCCCceEEeccCC-cceeeCcccCCcceee---CCCCccceeE
Q 033533           51 EVGIMCESCNGKGW------LVCDFCGGQKTNVKAQNN-RIYRRCPTCRAVGYVL---CSKCKVFKCV  108 (117)
Q Consensus        51 ~~~~~C~~C~G~G~------v~C~~C~GSGkv~~~~g~-~~~~~Cp~C~G~Glv~---Cp~C~G~~~~  108 (117)
                      .+...|+.|+|+|.      ..|+.|+|+|++....+. .....|+.|+|.|+++   |+.|.|.+-|
T Consensus         9 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_           9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             eeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            46789999999986      679999999998765554 4567899999999985   9999998654

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=5e-10  Score=71.94  Aligned_cols=56  Identities=29%  Similarity=0.710  Sum_probs=46.0

Q ss_pred             ccCCCCCCCcCe-----eeCCCCCCCceEEecc--CC---cceeeCcccCCccee-----eCCCCccceeE
Q 033533           53 GIMCESCNGKGW-----LVCDFCGGQKTNVKAQ--NN---RIYRRCPTCRAVGYV-----LCSKCKVFKCV  108 (117)
Q Consensus        53 ~~~C~~C~G~G~-----v~C~~C~GSGkv~~~~--g~---~~~~~Cp~C~G~Glv-----~Cp~C~G~~~~  108 (117)
                      .+.|+.|+|+|.     ..|+.|+|+|+++...  +.   ....+|+.|+|.|++     .|+.|.|.+.|
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v   72 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVE   72 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEe
Confidence            468999999996     5799999999987543  22   356789999999987     39999999865

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.5e-06  Score=53.80  Aligned_cols=40  Identities=33%  Similarity=0.734  Sum_probs=33.9

Q ss_pred             cccCCCCCCCcCe-----------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           52 VGIMCESCNGKGW-----------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        52 ~~~~C~~C~G~G~-----------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ....|..|+|.|.           .+|+.|+|+|+++.       .+|+.|+|+|.|.
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~-------~~C~~C~G~G~v~   77 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------DPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------SBCGGGTTSSEEE
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC-------CCCCCCCCceEee
Confidence            3467999999997           47999999999862       4899999999874

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=7.8e-06  Score=51.70  Aligned_cols=41  Identities=32%  Similarity=0.675  Sum_probs=33.5

Q ss_pred             ccCCCCCCCcCe---------------eeCCCCCCCceEEeccCCcceeeCcccCCcceee
Q 033533           53 GIMCESCNGKGW---------------LVCDFCGGQKTNVKAQNNRIYRRCPTCRAVGYVL   98 (117)
Q Consensus        53 ~~~C~~C~G~G~---------------v~C~~C~GSGkv~~~~g~~~~~~Cp~C~G~Glv~   98 (117)
                      ...|..|+|+|+               .+|+.|+|+|+++..     ..+|+.|+|.|.+.
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~-----~~~C~~C~G~g~v~   73 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP-----KDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT-----TSBCSSSTTSCEEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC-----CCCCCCCCCeeEeC
Confidence            457999999996               369999999997642     34899999999863

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=93.80  E-value=0.0019  Score=40.55  Aligned_cols=53  Identities=25%  Similarity=0.502  Sum_probs=38.2

Q ss_pred             cCCCCCCCcCe---------eeCCCCCCCceEEecc-----CCcceeeCcccCCccee---eCCCCccce
Q 033533           54 IMCESCNGKGW---------LVCDFCGGQKTNVKAQ-----NNRIYRRCPTCRAVGYV---LCSKCKVFK  106 (117)
Q Consensus        54 ~~C~~C~G~G~---------v~C~~C~GSGkv~~~~-----g~~~~~~Cp~C~G~Glv---~Cp~C~G~~  106 (117)
                      ..|..|+|.+.         ..|..|+|++......     +...-..|..|.+.|..   .|..|.+.+
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~g   81 (90)
T d1m1qa_          12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDG   81 (90)
T ss_dssp             TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSC
T ss_pred             CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCC
Confidence            46999999875         3599999998754322     11234678888888865   399998764