Citrus Sinensis ID: 033603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHcc
Coil and Loop (DISEMBL)
MAALKLVCALLLCILVtapvtnaitcgqvtgslAPCIAFlrtggrfppppccngvrslngaarttpdRQAACNCLKQayrsipginanvaaglprqcgvsipykispntdcsrvr
Flexible Loop (DISEMBL)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQcgvsipykispntdcsrvr
Low Complexity Region (SEG)
MaalklvcalllcilvtaPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR
Disordered region (IsUnstruct)
***LKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKI**********
Disordered Region (DISOPRED)
*AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV*
Disordered Region (DISEMBL)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP********
Disordered Region (DISPRO)
*AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDC****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q39950	116	Non-specific lipid-transf	N/A	no	0.973	0.965	0.628	1e-35
Q43017	117	Non-specific lipid-transf	N/A	no	0.982	0.965	0.587	1e-32
Q9M5X8	117	Non-specific lipid-transf	N/A	no	0.982	0.965	0.570	2e-32
P85894	91	Non-specific lipid-transf	N/A	no	0.791	1.0	0.706	8e-31
Q9M5X7	115	Non-specific lipid-transf	N/A	no	0.965	0.965	0.587	2e-30
Q43129	120	Non-specific lipid-transf	N/A	no	0.982	0.941	0.582	6e-30
Q42762	116	Non-specific lipid-transf	N/A	no	0.982	0.974	0.582	9e-30
Q42952	114	Non-specific lipid-transf	N/A	no	0.947	0.956	0.594	1e-29
Q43748	117	Non-specific lipid-transf	N/A	no	0.982	0.965	0.543	2e-28
P27056	114	Non-specific lipid-transf	N/A	no	0.947	0.956	0.558	5e-28

>sp|Q39950|NLTP_HELAN Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA + C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Helianthus annuus (taxid: 4232)

>sp|Q43017|NLTP1_PRUDU Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC++V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  
Sbjct: 5   AMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNL 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct: 64  ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 88/114 (77%), Gaps = 1/114 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC++V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  
Sbjct: 5   AMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNL 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct: 64  AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus avium (taxid: 42229)

>sp|P85894|LTP1_MORNI Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI 
Sbjct: 1   ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct: 60  GLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Morus nigra (taxid: 85232)

>sp|Q9M5X7|NLTP_MALDO Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 85/114 (74%), Gaps = 3/114 (2%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A  KL   + LC+ V+  V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG 
Sbjct: 5   AVTKLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGL 61

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct: 62  ARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Malus domestica (taxid: 3750)

>sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 3   ALKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNG 60
           +LKL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN 
Sbjct: 6   SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNS 65

Query: 61  AARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct: 66  AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gossypium hirsutum (taxid: 3635)

>sp|Q42762|NLTP1_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 3   ALKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNG 60
           +LKL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN 
Sbjct: 2   SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNS 61

Query: 61  AARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct: 62  AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gossypium hirsutum (taxid: 3635)

>sp|Q42952|NLTP1_TOBAC Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 82/111 (73%), Gaps = 2/111 (1%)

Query: 5   KLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAART 64
           K+ C ++LC++V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ART
Sbjct: 6   KIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSART 63

Query: 65  TPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           T DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct: 64  TEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. Binds cis-unsaturated fatty acids and jasmonic acid with a higher affinity than linear chain fatty acids. Formation of the complex with jasmonic acid results in a conformational change facilitating the LPT1 binding on the elicitin plasma membrane receptor that is known to be involved in plant defense induction. May also play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Nicotiana tabacum (taxid: 4097)

>sp|Q43748|NLTP_BETVU Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 2   AALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGA 61
           A +K  CAL++C++V AP+  AITCG V   LAPCI +L+ G   P   CC G++SLN A
Sbjct: 5   AFVKFTCALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSA 63

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           A +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ + 
Sbjct: 64  AASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Also has fungicide activity.

Beta vulgaris (taxid: 161934)

>sp|P27056|NLTP1_SOLLC Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 2/111 (1%)

Query: 5   KLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAART 64
           K+ C +LLC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+T
Sbjct: 6   KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKT 63

Query: 65  TPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           T DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct: 64  TADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
20385449	115	lipid-transfer protein [Citrus sinensis]	0.991	0.991	0.758	6e-39
218775151	115	nonspecific lipid transfer protein [Citr	0.991	0.991	0.732	4e-37
329762910	115	lipid transfer protein [Dimocarpus longa	0.991	0.991	0.681	9e-37
337730994	116	non-specific lipid-transfer protein [Hel	0.973	0.965	0.637	2e-34
337730995	116	non-specific lipid-transfer protein [Hel	0.973	0.965	0.637	3e-34
337730996	116	non-specific lipid-transfer protein [Hel	0.973	0.965	0.637	4e-34
337730997	116	non-specific lipid-transfer protein [Hel	0.973	0.965	0.637	4e-34
6093512	116	RecName: Full=Non-specific lipid-transfe	0.973	0.965	0.628	6e-34
319801076	102	lipid transfer protein [Helianthus annuu	0.886	1.0	0.669	2e-32
7012724	120	lipid transfer protein precursor [Gossyp	0.973	0.933	0.631	4e-32

>gi|20385449|gb|AAM21292.1|AF369931_1 lipid-transfer protein [Citrus sinensis]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 97/116 (83%), Gaps = 2/116 (1%)

Query: 1   MAALKLVCALLLCILVTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLV AL+LC+LVT P++  AITCGQV+GSLAPCI FLR+GG  P P CCNGVRSLN
Sbjct: 1   MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            AARTTPDRQ ACNCLKQA  SIP +N N AAGLP  CGVSIPYKIS +TDCS+VR
Sbjct: 60  AAARTTPDRQTACNCLKQAAGSIPNLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 115

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218775151|dbj|BAH03575.1| nonspecific lipid transfer protein [Citrus jambhiri]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 95/116 (81%), Gaps = 2/116 (1%)

Query: 1   MAALKLVCALLLCILVTAPVT-NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLV AL+LC+LVT P++  AITCGQV+ +LAPCI +LR GG  P P CCNGVRSLN
Sbjct: 1   MAALKLVSALVLCMLVTGPLSAQAITCGQVSSALAPCIFYLRAGGPIPVP-CCNGVRSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            AARTTPDRQ ACNCLKQA  SIP +N N A GLPR CGVSIPYKIS +TDCS+VR
Sbjct: 60  AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 115

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329762910|gb|AEC04836.1| lipid transfer protein [Dimocarpus longan]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 97/116 (83%), Gaps = 2/116 (1%)

Query: 1   MAALKLVCALLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLN 59
           MAALKLVCAL+ C+LV +PV  A ITCGQVT S+APCI +LR+GG  PPP CCNG++SLN
Sbjct: 1   MAALKLVCALVACMLVVSPVAQAAITCGQVTSSVAPCIQYLRSGGSVPPP-CCNGIKSLN 59

Query: 60  GAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            AARTTPDRQ AC CL+ A ++IPGIN N+AAGLP +CGV+IPYKIS +T+C+ V+
Sbjct: 60  NAARTTPDRQQACRCLQNAAKAIPGINTNLAAGLPGKCGVNIPYKISTSTNCASVK 115

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730994|gb|AEI70827.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A+TCGQV+ SLAPCI +L  GG  PP  CCNGV+ LN AA
Sbjct: 5   AMMVLCAVVTCMVVAAPYAEALTCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKGLNNAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI G+NA  AA LP +CGVSIPYKISP TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASLPGKCGVSIPYKISPGTDCSKVQ 116

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730995|gb|AEI70828.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A+TCGQV+ SLAPCI +L  GG  PP  CCNGV+SLN AA
Sbjct: 5   AMMVLCAVVTCMVVVAPYAEALTCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI GIN   AA LP +CGV+IPYKISP TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYSSISGINEGNAASLPGKCGVNIPYKISPGTDCSKVQ 116

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730996|gb|AEI70829.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A++CGQV+ SLAPCI +L  GG  PP  CCNGV+ LN AA
Sbjct: 5   AMMVLCAVVTCMVVVAPYAEALSCGQVSSSLAPCIGYLTKGGAVPPA-CCNGVKGLNNAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI GINA  AA LP +CGVSIPYKISP TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGINAGNAASLPGKCGVSIPYKISPGTDCSKVQ 116

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337730997|gb|AEI70830.1| non-specific lipid-transfer protein [Helianthus annuus]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA++ C++V AP   A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAVVTCMVVAAPYAEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNCAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI GINA  AA LP +CGVSIPYKISP+TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGINAGNAASLPGKCGVSIPYKISPSTDCSKVQ 116

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6093512|sp|Q39950.1|NLTP_HELAN RecName: Full=Non-specific lipid-transfer protein; Short=LTP; Short=NsLTP; AltName: Full=SDI-9; Flags: Precursor gi|1050918|emb|CAA63340.1| lipid transfer protein [Helianthus annuus]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 3   ALKLVCALLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAA 62
           A+ ++CA + C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA
Sbjct: 5   AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAA 63

Query: 63  RTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           +TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct: 64  KTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319801076|emb|CBW38498.1| lipid transfer protein [Helianthus annuus]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 84/103 (81%), Gaps = 1/103 (0%)

Query: 13  CILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAAC 72
           C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC
Sbjct: 1   CMVVAAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAAC 59

Query: 73  NCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            CLK AY SI G+NA  AA LP +CGVSIPYKISP+TDCS+V+
Sbjct: 60  GCLKSAYNSISGVNAGNAASLPGKCGVSIPYKISPSTDCSKVQ 102

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7012724|gb|AAF35186.1|AF195865_1 lipid transfer protein precursor [Gossypium hirsutum] gi|208427033|gb|ACI26698.1| lipid transfer protein [Gossypium hirsutum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 90/114 (78%), Gaps = 2/114 (1%)

Query: 4   LKLVCALLLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGA 61
           LKL C ++LC++V AP+   A+TCGQVT SLAPCI +LR TG    PP CC+G++SLN A
Sbjct: 7   LKLACVVVLCMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSLNSA 66

Query: 62  ARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           A+TTPDRQAAC C+K A   IPGIN  +A+GLP +CGV+IPYKISP+TDCS V+
Sbjct: 67  AQTTPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSVK 120

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.826	0.826	0.541	8.4e-26
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.8	0.821	0.552	2.2e-25
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.834	0.813	0.53	2.9e-25
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.782	0.989	0.538	1.8e-23
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.817	0.764	0.51	7.8e-23
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.834	0.813	0.53	3.4e-22
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.826	0.798	0.479	1.3e-20
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.8	0.754	0.467	1.7e-20
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.791	0.764	0.489	2.5e-19
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.8	0.779	0.521	3.1e-19

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 52/96 (54%), Positives = 70/96 (72%)

Query:    20 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY 79
             V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   
Sbjct:    21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTA 79

Query:    80 RSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
             +SI G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    80 KSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/96 (55%), Positives = 70/96 (72%)

Query:    20 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY 79
             V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A 
Sbjct:    21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA 79

Query:    80 RSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
             +   G+N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:    80 K---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 53/100 (53%), Positives = 74/100 (74%)

Query:    19 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLK 76
             P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++
Sbjct:    20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQ 78

Query:    77 QAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
              A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:    79 GAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 49/91 (53%), Positives = 67/91 (73%)

Query:    24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
             +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query:    84 GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
             GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    60 GINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 51/100 (51%), Positives = 68/100 (68%)

Query:    19 PVTN--AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCL 75
             P+T   A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+
Sbjct:    20 PITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCI 79

Query:    76 KQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 112
             K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:    80 KNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 53/100 (53%), Positives = 68/100 (68%)

Query:    19 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLK 76
             P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+
Sbjct:    20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQ 78

Query:    77 QAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
              A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:    79 SAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 46/96 (47%), Positives = 60/96 (62%)

Query:    19 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA 78
             P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A
Sbjct:    21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLA 79

Query:    79 YRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
              + I G+N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:    80 GKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             A++CGQV   LAPC+A++          CC+GV+ LNG AR++PDR+ AC CLK    SI
Sbjct:    30 ALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLATSI 89

Query:    83 PGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
               IN    +G+P +CGVS+P+ IS +T+C+ V
Sbjct:    90 KSINMGKVSGVPGKCGVSVPFPISMSTNCNNV 121

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/92 (48%), Positives = 55/92 (59%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +I
Sbjct:    28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTI 86

Query:    83 PGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
             PGIN + A  LP +CGV+I    S   DC+ +
Sbjct:    87 PGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 49/94 (52%), Positives = 60/94 (63%)

Query:    23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
             AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++
Sbjct:    26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARAL 84

Query:    83 PG-INANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
                +NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:    85 GSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43304	NLTPD_BRAOT	No assigned EC number	0.5087	0.9739	0.9491	N/A	no
Q0IQK9	NLTP1_ORYSJ	No assigned EC number	0.5824	0.7826	0.7758	yes	no
A0AT29	NLTP2_LENCU	No assigned EC number	0.5614	0.9652	0.9406	N/A	no
Q43129	NLTP2_GOSHI	No assigned EC number	0.5826	0.9826	0.9416	N/A	no
Q43748	NLTP_BETVU	No assigned EC number	0.5438	0.9826	0.9658	N/A	no
Q42616	NLTP3_BRANA	No assigned EC number	0.5423	0.9913	0.9743	N/A	no
Q42615	NLTP2_BRANA	No assigned EC number	0.5350	0.9652	0.9487	N/A	no
Q42614	NLTP1_BRANA	No assigned EC number	0.5254	0.9913	0.9743	N/A	no
Q03461	NLTP2_TOBAC	No assigned EC number	0.5315	0.9478	0.9561	N/A	no
O24418	NLTP6_GOSHI	No assigned EC number	0.5304	0.9826	0.9416	N/A	no
Q42952	NLTP1_TOBAC	No assigned EC number	0.5945	0.9478	0.9561	N/A	no
Q39950	NLTP_HELAN	No assigned EC number	0.6283	0.9739	0.9655	N/A	no
Q42641	NLTPA_BRAOT	No assigned EC number	0.5043	0.9652	0.9406	N/A	no
A0AT31	NLTP5_LENCU	No assigned EC number	0.5438	0.9739	0.9655	N/A	no
Q42642	NLTPB_BRAOT	No assigned EC number	0.5508	0.9913	0.9743	N/A	no
Q9M5X6	NLTP_PYRCO	No assigned EC number	0.5263	0.9652	0.9652	N/A	no
Q9M5X7	NLTP_MALDO	No assigned EC number	0.5877	0.9652	0.9652	N/A	no
O24037	NLTP1_SOLPN	No assigned EC number	0.5585	0.9478	0.9561	N/A	no
O24038	NLTP2_SOLPN	No assigned EC number	0.5405	0.9478	0.9561	N/A	no
Q9M5X8	NLTP_PRUAV	No assigned EC number	0.5701	0.9826	0.9658	N/A	no
Q9SW93	SCA_LILLO	No assigned EC number	0.5130	0.9826	1.0	N/A	no
Q43017	NLTP1_PRUDU	No assigned EC number	0.5877	0.9826	0.9658	N/A	no
Q42589	NLTP1_ARATH	No assigned EC number	0.5217	0.9652	0.9406	yes	no
P27056	NLTP1_SOLLC	No assigned EC number	0.5585	0.9478	0.9561	N/A	no
Q43019	NLTP3_PRUDU	No assigned EC number	0.5470	0.9652	0.9024	N/A	no
P27631	NLTP_DAUCA	No assigned EC number	0.5700	0.9130	0.875	N/A	no
Q42762	NLTP1_GOSHI	No assigned EC number	0.5826	0.9826	0.9741	N/A	no
Q3YMR2	NLTP2_SOLCI	No assigned EC number	0.5405	0.9478	0.9561	N/A	no
Q39794	NLTP_GERHY	No assigned EC number	0.5089	0.9652	0.9568	N/A	no
P93224	NLTP2_SOLLC	No assigned EC number	0.5612	0.8347	0.8421	N/A	no
O23758	NLTP_CICAR	No assigned EC number	0.5689	0.9913	0.9827	N/A	no
P85894	LTP1_MORNI	No assigned EC number	0.7065	0.7913	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	4e-39
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-10
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	3e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	1e-04

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score =  125 bits (316), Expect = 4e-39
 Identities = 59/89 (66%), Positives = 68/89 (76%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I+CGQVT  LAPC+ +L  GG  P P CC+GV+SLNG A+TT DRQAACNCLK A   I 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCS 112
           G+N   AAGLP +CGVSIPY ISP+TDCS
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 52.2 bits (125), Expect = 2e-10
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 12/82 (14%)

Query: 26  CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAY--RSIP 83
           CGQV   LAPC  +L+ G + P   CC+ +R L          QA C C         I 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL----------QAQCRCTAIRAIVLGIE 50

Query: 84  GINANVAAGLPRQCGVSIPYKI 105
           GIN   AA LP  CGV++PY I
Sbjct: 51  GINPQAAASLPSMCGVNVPYGI 72

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQ-AYRSIPGINANVAA 91
          LAPC+++L  G   PP  CC+G++S+  +     D +  C  L       +   NA  A 
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRAL 55

Query: 92 GLPRQCGV 99
           LP  CG+
Sbjct: 56 ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 16/85 (18%)

Query: 26  CGQVTGSLAPCIAFLRTGGRFPPPP--CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           CGQV   LAPC+++L  G R  PP   CC+ +R LN          A C CL      + 
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLG 51

Query: 84  GI-----NANVAAGLPRQCGVSIPY 103
            +     NA  AA LP  CGV  PY
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPPPY 76

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.95
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.6
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.47
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.32
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.28
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.08
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.9
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	92.3
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	90.56

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.95  E-value=1.6e-28  Score=158.76  Aligned_cols=89  Identities=66%  Similarity=1.213  Sum_probs=83.2

Q ss_pred             CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (115)
Q Consensus        24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (115)
                      .+|..+...|.||++|++|++..|+++||++++++++.++|+.||+..|+|+++.+.++++||.+|+.+||++||+++||
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            36899999999999999998778999999999999999999999999999998877777669999999999999999999


Q ss_pred             CCCCCCCCC
Q 033603          104 KISPNTDCS  112 (115)
Q Consensus       104 ~i~~~~dC~  112 (115)
                      ||+++|||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.60  E-value=5.8e-16  Score=96.72  Aligned_cols=68  Identities=25%  Similarity=0.546  Sum_probs=54.4

Q ss_pred             ccccccCccccHHHHhcCC--CCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603           26 CGQVTGSLAPCIAFLRTGG--RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (115)
Q Consensus        26 C~~~~~~L~pCl~yl~g~~--~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (115)
                      |+..+..|.||++|+++++  ..|+..||+++|+++        ++  |+|.+.....++.||.++|.+||++||+++|.
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~   70 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP   70 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence            4555578999999999876  368999999999842        33  99986655445569999999999999999873

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.47  E-value=1.9e-14  Score=86.91  Aligned_cols=62  Identities=39%  Similarity=0.852  Sum_probs=47.9

Q ss_pred             ccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCC-CHHHHhhchhhcCC
Q 033603           33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGV   99 (115)
Q Consensus        33 L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~i-n~~~a~~LP~~Cgv   99 (115)
                      |.||++|++|++..|+++||++++++++.     |++..|.++++......++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            57999999988668999999999998753     3444444466655443344 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.32  E-value=1.7e-13  Score=88.46  Aligned_cols=69  Identities=35%  Similarity=0.813  Sum_probs=43.2

Q ss_pred             CCCccccccCcccc---HHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-ccCCCCCHHHHhhchhh
Q 033603           23 AITCGQVTGSLAPC---IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQ   96 (115)
Q Consensus        23 ~~~C~~~~~~L~pC---l~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~-~~~~~in~~~a~~LP~~   96 (115)
                      ..+|.+   .|.||   +.|+.++. .||++||+++|++.+.       +..|+|  +++.. ..+ +||.+|+.+||++
T Consensus        19 ~~~c~~---~l~~c~~~~~~~~~~~-~Ps~~CC~~l~~~~~~-------~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~   86 (96)
T PF14368_consen   19 CCSCAN---SLLPCCPCLCYVTGGP-APSAACCSALKSVVQA-------DPPCLCQLLNSPGAPGF-GINVTRALALPAA   86 (96)
T ss_dssp             TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC-----------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHH
T ss_pred             cchhHH---HHhccccchhccCCCC-CCCHHHHHHHHHhccC-------CCCCHHHhcCccccccC-CcCHHHHHHHHHH
Confidence            456744   46666   78888554 8999999999998531       345777  44443 334 7999999999999


Q ss_pred             cCCCCCC
Q 033603           97 CGVSIPY  103 (115)
Q Consensus        97 Cgv~~p~  103 (115)
                      ||++.|.
T Consensus        87 Cg~~~~~   93 (96)
T PF14368_consen   87 CGVPVPP   93 (96)
T ss_dssp             CTSS-S-
T ss_pred             cCCCCCC
Confidence            9999885

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.28  E-value=2.2e-12  Score=79.25  Aligned_cols=58  Identities=29%  Similarity=0.708  Sum_probs=47.3

Q ss_pred             cCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceee--ccc-cccCCCCCHHHHhhchhhcCCCCC
Q 033603           31 GSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQA-YRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        31 ~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~--~~~-~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +.|.+|++|++++. .||++||+.+|+           |..|+|.  ++. +.++  ||.++|.+||++||+++|
T Consensus         4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence            37999999999775 799999999997           2369994  332 2334  899999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.08  E-value=1e-10  Score=71.85  Aligned_cols=69  Identities=48%  Similarity=0.936  Sum_probs=52.6

Q ss_pred             ccccccCccccHHHHhcC--CCCCCcccccchhhhhcccCCCcCCcccceeeccc--cccCCC---CCHHHHhhchhhcC
Q 033603           26 CGQVTGSLAPCIAFLRTG--GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA--YRSIPG---INANVAAGLPRQCG   98 (115)
Q Consensus        26 C~~~~~~L~pCl~yl~g~--~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~--~~~~~~---in~~~a~~LP~~Cg   98 (115)
                      |......+.+|.+|++++  ...|+.+||++++.+.         ...|+|....  ...+..   ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            556666778999999987  4578899999999984         2469996432  222211   58999999999999


Q ss_pred             CCCCC
Q 033603           99 VSIPY  103 (115)
Q Consensus        99 v~~p~  103 (115)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99875

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.90  E-value=2.5e-11  Score=77.76  Aligned_cols=70  Identities=40%  Similarity=0.861  Sum_probs=52.8

Q ss_pred             cccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccccccC----------CCCCHHHHhhch
Q 033603           27 GQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSI----------PGINANVAAGLP   94 (115)
Q Consensus        27 ~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~----------~~in~~~a~~LP   94 (115)
                      ......+.+|.+|++++...|+..||++|+++..          .|+|  ++......          .+++..+|.+||
T Consensus         9 ~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~----------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP   78 (90)
T PF00234_consen    9 SPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLDP----------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP   78 (90)
T ss_dssp             GTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred             hhccccccccHHHHhcccccchHHHhHHHHHHhH----------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3333458999999999866799999999999843          4676  44433321          258899999999


Q ss_pred             hhcCCCCCCCCCCCCCC
Q 033603           95 RQCGVSIPYKISPNTDC  111 (115)
Q Consensus        95 ~~Cgv~~p~~i~~~~dC  111 (115)
                      +.||+++|+     +||
T Consensus        79 ~~C~v~~~~-----~~C   90 (90)
T PF00234_consen   79 SMCNVSPPY-----TDC   90 (90)
T ss_dssp             HHTTSSSSS-----S-G
T ss_pred             HHCCCCCCC-----CCC
Confidence            999999997     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=92.30  E-value=0.086  Score=33.81  Aligned_cols=71  Identities=27%  Similarity=0.533  Sum_probs=44.0

Q ss_pred             cCccccHHHHhc----CCCCCCcccccchhhhhcccCCCcCCccccee--eccccccCCCCCHH-HHhhchhhcCCCCCC
Q 033603           31 GSLAPCIAFLRT----GGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINAN-VAAGLPRQCGVSIPY  103 (115)
Q Consensus        31 ~~L~pCl~yl~g----~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~~~in~~-~a~~LP~~Cgv~~p~  103 (115)
                      ..|.-|.+.+..    .+..+..+||+-++.|.+.      --+.|+|  +|...-.+-++|.+ ....|-..||...| 
T Consensus         7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p-   79 (85)
T PF14547_consen    7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP-   79 (85)
T ss_pred             hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc-
Confidence            367778888711    1124678999999998653      1357999  44332221123332 45577788999887 


Q ss_pred             CCCCCCCC
Q 033603          104 KISPNTDC  111 (115)
Q Consensus       104 ~i~~~~dC  111 (115)
                         ++|.|
T Consensus        80 ---~gf~C   84 (85)
T PF14547_consen   80 ---SGFTC   84 (85)
T ss_pred             ---CCCcC
Confidence               66666

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=90.56  E-value=0.3  Score=31.33  Aligned_cols=71  Identities=27%  Similarity=0.489  Sum_probs=41.5

Q ss_pred             ccccccCccccHHHHhcC----CCCCCcccccchhhhhcccCCCcCCcccceeeccccccCC-CCCHH-HHhhchhhcCC
Q 033603           26 CGQVTGSLAPCIAFLRTG----GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP-GINAN-VAAGLPRQCGV   99 (115)
Q Consensus        26 C~~~~~~L~pCl~yl~g~----~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~-~in~~-~a~~LP~~Cgv   99 (115)
                      |......|.-|..-+..-    +..|..+||.-++.+.+.     | -+.|+|-..-++.++ ++|.+ +..-|-..||-
T Consensus         4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi~~~~pv~l~llln~CGk   77 (85)
T cd01958           4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGISINIPVALSLLLNSCGR   77 (85)
T ss_pred             CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence            443334566777766421    225668999999988653     1 367999532222221 23333 34455667999


Q ss_pred             CCC
Q 033603          100 SIP  102 (115)
Q Consensus       100 ~~p  102 (115)
                      ..|
T Consensus        78 ~~P   80 (85)
T cd01958          78 NVP   80 (85)
T ss_pred             cCC
Confidence            887

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		5e-29
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		6e-27
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		4e-26
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		2e-24
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		3e-24
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		8e-22
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		4e-20
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		4e-20
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		2e-18
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		6e-18

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+P
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           G+N N AA LP +CGVSIPYKIS +T+C+ V+
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCATVK 92

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 69/92 (75%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI
Sbjct: 1   AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
             +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct: 60  TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 92

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I 
Sbjct: 1   ITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
           G+NA  AA +P +CGVS+PY IS + DCSRV
Sbjct: 60  GLNAGNAASIPSKCGVSVPYTISASIDCSRV 90

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
           GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            +N N AA +P +C V++PY ISP+ DCSR+
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            +N N AA +P +C V++PY ISP+ DCSR+
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I 
Sbjct: 1   IDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            +N + A  +P +CGV++PY IS N DCSRV
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 25  TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG 84
            CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I  
Sbjct: 2   DCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85  INANVAAGLPRQCGVSIPYKISPNTDCSRV 114
           +N + A  +P +CGV++PY IS N DCSRV
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	4e-38
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	8e-37
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	3e-36
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	5e-36
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	2e-35

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score =  122 bits (308), Expect = 4e-38
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score =  119 bits (300), Expect = 8e-37
 Identities = 59/93 (63%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
            GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  118 bits (296), Expect = 3e-36
 Identities = 61/92 (66%), Positives = 74/92 (80%), Gaps = 1/92 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           ITCGQV+ SLAPCI ++R GG   PP CCNG+R++N  ARTTPDRQAACNCLKQ   S+P
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGA-VPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRVR 115
           G+N N AA LP +CGVSIPYKIS +T+C+ V+
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCATVK 92

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  117 bits (294), Expect = 5e-36
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           I CG V   + PC++++  GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I 
Sbjct: 1   IDCGHVDSLVRPCLSYV-QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            +N + A  +P +CGV++PY IS N DCSRV
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score =  115 bits (290), Expect = 2e-35
 Identities = 49/91 (53%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
           GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.97
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.97
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.97
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.97
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.97
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.96
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.61
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.53
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.49
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	91.12
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	87.1

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.97  E-value=3.9e-34  Score=185.94  Aligned_cols=92  Identities=59%  Similarity=1.068  Sum_probs=86.9

Q ss_pred             CCCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +++|+++...|.||++|++|++ .|++.||+|+++|++.++|+.|||.+|+|+|+.+..+++||.++|.+||++||+++|
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP   79 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence            4789999999999999999876 699999999999999999999999999999988777778999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033603          103 YKISPNTDCSRVR  115 (115)
Q Consensus       103 ~~i~~~~dC~~i~  115 (115)
                      ||||+++||++|+
T Consensus        80 ~~Is~~~dC~~v~   92 (93)
T 2ljo_A           80 YKISTTTNCNTVK   92 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCC
Confidence            9999999999996

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.97  E-value=1.7e-33  Score=182.89  Aligned_cols=93  Identities=61%  Similarity=1.096  Sum_probs=87.0

Q ss_pred             CCCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +++|+++...|.||++|++|++..|+++||++||++++.++|++|||..|+|++....++++||.++|.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            46899999999999999999876788899999999999999999999999999877777778999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033603          103 YKISPNTDCSRVR  115 (115)
Q Consensus       103 ~~i~~~~dC~~i~  115 (115)
                      |||+++|||++|+
T Consensus        81 ~~is~~~dC~~v~   93 (93)
T 1afh_A           81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCSSSCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.97  E-value=3.2e-33  Score=180.99  Aligned_cols=91  Identities=64%  Similarity=1.120  Sum_probs=85.3

Q ss_pred             CCCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +++|+++...|.||++|++|++. |+ +||++||+|++.|+|++|||..|+|+++.+..+++||.++|.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            46899999999999999999886 88 99999999999999999999999999877677778999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033603          103 YKISPNTDCSRVR  115 (115)
Q Consensus       103 ~~i~~~~dC~~i~  115 (115)
                      |||+++|||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1t12_A           79 YKISPSTDCSKVQ   91 (91)
T ss_dssp             SCSSSSSCCTTCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.97  E-value=1.2e-32  Score=178.21  Aligned_cols=91  Identities=54%  Similarity=1.085  Sum_probs=85.3

Q ss_pred             CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (115)
Q Consensus        24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (115)
                      ++|+++...|.||++|++++++ |+++||+++|+|++.|+|+.|||..|+|+++.+.++++||.++|.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999999875 999999999999999999999999999998777777679999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 033603          104 KISPNTDCSRVR  115 (115)
Q Consensus       104 ~i~~~~dC~~i~  115 (115)
                      ||++++||++|+
T Consensus        80 ~is~~~dC~~v~   91 (91)
T 1siy_A           80 KISTSTNCNSIN   91 (91)
T ss_dssp             CSCTTSCSSTTC
T ss_pred             CCCCCCCCccCC
Confidence            999999999986

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.97  E-value=5.1e-33  Score=179.70  Aligned_cols=90  Identities=47%  Similarity=0.992  Sum_probs=84.6

Q ss_pred             CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (115)
Q Consensus        24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (115)
                      ++|+++...|.||++|++|++. |+++||+++|+|++.|+|++|||..|+|+++.+.++++||.++|.+||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999999875 999999999999999999999999999998877777789999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 033603          104 KISPNTDCSRV  114 (115)
Q Consensus       104 ~i~~~~dC~~i  114 (115)
                      ||++++||++|
T Consensus        80 ~is~~~dC~~v   90 (90)
T 1bwo_A           80 TISLNIDCSRV   90 (90)
T ss_dssp             CCCTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence            99999999987

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.96  E-value=2.2e-32  Score=177.32  Aligned_cols=92  Identities=66%  Similarity=1.223  Sum_probs=85.4

Q ss_pred             CCCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +++|+++...|.||++|++|++ .|+++||++||+|++.|+|+.|||..|+|++.....+++||.++|.+||++||+++|
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence            3689999999999999999887 589999999999999999999999999999876666768999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033603          103 YKISPNTDCSRVR  115 (115)
Q Consensus       103 ~~i~~~~dC~~i~  115 (115)
                      |||++++||++|+
T Consensus        80 ~~is~~~dC~~v~   92 (92)
T 2alg_A           80 YKISASTNCATVK   92 (92)
T ss_dssp             SCSSTTSCGGGCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.61  E-value=2.3e-17  Score=103.18  Aligned_cols=71  Identities=28%  Similarity=0.626  Sum_probs=59.0

Q ss_pred             CCCccccccCccccHHHHhcC-CCCCCcccccchhhhhcccCCCcCCcccceeeccc---cccCCCCCHHHHhhchhhcC
Q 033603           23 AITCGQVTGSLAPCIAFLRTG-GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA---YRSIPGINANVAAGLPRQCG   98 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~---~~~~~~in~~~a~~LP~~Cg   98 (115)
                      ..+|+++...|.||++|++++ ...||++||++||+        .|  ..|+|.+..   +.++ +||.++|.+||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~--~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------AD--FACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CC--HHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cC--cCCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            357999999999999999984 45799999999997        13  379997544   4556 699999999999999


Q ss_pred             CCCCCC
Q 033603           99 VSIPYK  104 (115)
Q Consensus        99 v~~p~~  104 (115)
                      +++||.
T Consensus        71 v~~p~~   76 (77)
T 2rkn_A           71 LANAPT   76 (77)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            999873

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.53  E-value=4.3e-16  Score=95.11  Aligned_cols=58  Identities=29%  Similarity=0.615  Sum_probs=48.5

Q ss_pred             CccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           32 SLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        32 ~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      .|.||++|++++. .||++||++||+           |..|+|  +++..... +||.++|.+||++||+++|
T Consensus         6 ~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTCC-CCCHHHHHHHHH-----------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            7899999999876 699999999997           357999  55543222 5899999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.49  E-value=6.5e-16  Score=94.81  Aligned_cols=63  Identities=27%  Similarity=0.616  Sum_probs=51.0

Q ss_pred             CccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        25 ~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +|+..  .|.||++|++++. .||++||++||+           |..|+|  +++..... +||.++|.+||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA-----------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH-----------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            45544  7999999999876 699999999997           356999  56543322 5999999999999999876

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=91.12  E-value=0.011  Score=46.78  Aligned_cols=51  Identities=25%  Similarity=0.591  Sum_probs=31.3

Q ss_pred             cccccchhhhhcccCCCcCCccccee--ecccccc-----CC----CCCHHHHhhchhhcCCCCC--CCCCC
Q 033603           49 PPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRS-----IP----GINANVAAGLPRQCGVSIP--YKISP  107 (115)
Q Consensus        49 ~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~-----~~----~in~~~a~~LP~~Cgv~~p--~~i~~  107 (115)
                      .+||+.|+.+.+        ++-|+|  ++.....     ..    ..-..+|..||..||+..|  .+|+.
T Consensus       429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            579999998742        135888  4332210     00    0113559999999999976  55554

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=87.10  E-value=0.13  Score=31.68  Aligned_cols=72  Identities=25%  Similarity=0.521  Sum_probs=47.3

Q ss_pred             CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhh-chhhcCCCCC
Q 033603           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAG-LPRQCGVSIP  102 (115)
Q Consensus        24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~-LP~~Cgv~~p  102 (115)
                      .+|-    .|.-|.+-+.|.. .|..+||+-++.|.+.     | -++|+|-.--+-++  +|.+...+ |-..||...|
T Consensus         6 ~~CP----kLgvCanvL~g~~-~~~~~CC~Ll~GL~dl-----e-AAvCLCtaik~Lgi--lnlpv~L~llln~Cgk~~P   72 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGSL-GTVDDCCALIGGLGDI-----E-AIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP   72 (80)
T ss_dssp             CCSC----CCGGGGGGGGTCC-TTHHHHHHHHHTSCHH-----H-HHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC
T ss_pred             CCCC----chhHHHHHhCcCC-CCCCccchhhhCcchh-----h-hhhhhhhhccccce--eecChhHHHHHHHhCCcCc
Confidence            4566    5788988885433 3667899999998653     1 36799931112223  46665555 5578999987


Q ss_pred             CCCCCCCCCC
Q 033603          103 YKISPNTDCS  112 (115)
Q Consensus       103 ~~i~~~~dC~  112 (115)
                          +.|.|.
T Consensus        73 ----~gF~C~   78 (80)
T 1hyp_A           73 ----SNATCP   78 (80)
T ss_dssp             ----CCCCCS
T ss_pred             ----CCCCCC
Confidence                667775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-34
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	6e-34

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score =  112 bits (281), Expect = 2e-34
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query: 23  AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI 82
           AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PGINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  111 bits (278), Expect = 6e-34
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 24  ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP 83
           + CGQV   + PC+ ++  GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I 
Sbjct: 1   LNCGQVDSKMKPCLTYV-QGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59

Query: 84  GINANVAAGLPRQCGVSIPYKISPNTDCSRV 114
            +N N AA +P +C V++PY ISP+ DCSR+
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.97
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.97
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.14
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.06

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=8.7e-34  Score=182.75  Aligned_cols=93  Identities=61%  Similarity=1.096  Sum_probs=87.2

Q ss_pred             CCCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCC
Q 033603           23 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        23 ~~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      +++|+++...|.||++||+|++..|++.||+++++|++.++|+.|||.+|+|+++....+++||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            47899999999999999999887899999999999999999999999999999887666657999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033603          103 YKISPNTDCSRVR  115 (115)
Q Consensus       103 ~~i~~~~dC~~i~  115 (115)
                      |||++++||++|+
T Consensus        81 ~pis~~~dCs~i~   93 (93)
T d1fk5a_          81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCcCC
Confidence            9999999999996

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.97  E-value=3.3e-33  Score=179.37  Aligned_cols=91  Identities=46%  Similarity=0.982  Sum_probs=85.3

Q ss_pred             CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603           24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY  103 (115)
Q Consensus        24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~  103 (115)
                      ++|+++...|.||++|++|++ +|++.||+++++|++.++|+.|||.+|+|+++.+..+++||.+||.+||++||+++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~-~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~   79 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPY   79 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHhhHHHHcCCC-CCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCC
Confidence            479999999999999999876 7999999999999999999999999999999876666689999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 033603          104 KISPNTDCSRVR  115 (115)
Q Consensus       104 ~i~~~~dC~~i~  115 (115)
                      |||+++||++|+
T Consensus        80 pis~~~dC~~i~   91 (91)
T d1mida_          80 TISPDIDCSRIY   91 (91)
T ss_dssp             CCCTTCCGGGCC
T ss_pred             CCCCCCCCCCCC
Confidence            999999999996

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.14  E-value=2.3e-12  Score=76.62  Aligned_cols=61  Identities=31%  Similarity=0.720  Sum_probs=51.9

Q ss_pred             ccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccc-cccCCCCCHHHHhhchhhcCCCCC
Q 033603           26 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQA-YRSIPGINANVAAGLPRQCGVSIP  102 (115)
Q Consensus        26 C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~-~~~~~~in~~~a~~LP~~Cgv~~p  102 (115)
                      |+..  .|+||++.+++++ .||.+||+.+|+           |..|+|  +++. ..+|  ||..+|..+-+.||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~y--v~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYGQY--IRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCC-CCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHH--HTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCC-CCcHHHHHHHHh-----------cCCccceecCCccHHHH--cCCHHHHHHHHhcCCCCC
Confidence            5555  6999999999988 799999999998           678999  4654 3444  899999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.06  E-value=2.5e-12  Score=76.89  Aligned_cols=62  Identities=27%  Similarity=0.658  Sum_probs=52.5

Q ss_pred             CccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-ccCCCCCHHHHhhchhhcCCCC
Q 033603           25 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQCGVSI  101 (115)
Q Consensus        25 ~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~-~~~~~in~~~a~~LP~~Cgv~~  101 (115)
                      .|+..  .|+||++.++++. .||.+||+.+|+           |..|+|  +++.. .+|  ||..+|..+-..||+++
T Consensus         2 ~C~p~--~L~~C~~ai~~g~-~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~y--v~spnarkv~~aCgvp~   65 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGA-RPTAACCSSLRA-----------QQGCFCQFAKDPRYGRY--VNSPNARKAVSSCGIAL   65 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCC-STTHHHHHHHHH-----------HHHHHHHHTTCSSHHHH--TTTTTGGGCCCCCSSCS
T ss_pred             CCChh--hccccHHHHhCCC-CCcHHHHHHHHh-----------cCCccceeccCccHHHH--cCCHHHHHHHHhcCCCC
Confidence            47665  7999999999988 699999999998           678999  46653 344  89999999999999998


Q ss_pred             C
Q 033603          102 P  102 (115)
Q Consensus       102 p  102 (115)
                      |
T Consensus        66 P   66 (69)
T d1l6ha_          66 P   66 (69)
T ss_dssp             C
T ss_pred             C
Confidence            7