Citrus Sinensis ID: 033628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MSNQVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSNQVAPLIAGMAVAAAAYAGKYGIRAWQafkarpptarmrkfyeggfqpVMTRREAALILgvrestptekvkEAHRRVMVanhpdaggshyLASKINEAKDIMLrrtkgsnsaf
Flexible Loop (DISEMBL)
MSNQVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKfyeggfqpvMTRREAALIlgvrestptekvkeahRRVMVAnhpdaggshylaSKINEAKDIMLRRtkgsnsaf
Low Complexity Region (SEG)
MSNQVapliagmavaaaayaGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Disordered region (IsUnstruct)
*****APLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGV****************************************************
Disordered Region (DISOPRED)
**NQVAPLIAGMAVAAAAYAGKYGIR******************************AALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDI************
Disordered Region (DISEMBL)
MSNQVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Disordered Region (DISPRO)
***QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR********
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNQVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q8RV04	112	Mitochondrial import inne	yes	no	0.947	0.973	0.788	2e-46
Q9SF33	112	Mitochondrial import inne	no	no	0.817	0.839	0.829	1e-39
Q9LYY2	112	Mitochondrial import inne	no	no	0.947	0.973	0.798	7e-39
Q3ZBN8	116	Mitochondrial import inne	yes	no	0.817	0.810	0.5	1e-23
Q5RF34	116	Mitochondrial import inne	yes	no	0.817	0.810	0.490	7e-23
Q96DA6	116	Mitochondrial import inne	yes	no	0.817	0.810	0.490	7e-23
Q5RCP4	150	DnaJ homolog subfamily C	no	no	0.913	0.7	0.486	2e-22
Q9Y5T4	150	DnaJ homolog subfamily C	no	no	0.913	0.7	0.486	3e-22
Q78YY6	149	DnaJ homolog subfamily C	yes	no	0.834	0.644	0.485	1e-21
Q6PBT7	115	Mitochondrial import inne	no	no	0.808	0.808	0.490	1e-20

>sp|Q8RV04|TI141_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=3 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 97/109 (88%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           P IAG+AVAA A AG+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES
Sbjct: 4   PFIAGVAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRES 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 64  VAAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF33|TI142_ARATH Mitochondrial import inner membrane translocase subunit TIM14-2 OS=Arabidopsis thaliana GN=TIM14-2 PE=3 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 80/94 (85%)

Query: 22  KYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMV 81
           KYGI AWQAFK RP   RMRKFYEGGFQ  M RREAALILGVRES   EKVKEAHRRVMV
Sbjct: 19  KYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVMV 78

Query: 82  ANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
           ANHPDAGGSHYLASKINEAKD+ML +TK S SAF
Sbjct: 79  ANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY2|TI143_ARATH Mitochondrial import inner membrane translocase subunit TIM14-3 OS=Arabidopsis thaliana GN=TIM14-3 PE=3 SV=1

 Score =  158 bits (400), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 94/109 (86%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           P+IAG AVAAAA AG+YGI AWQAFKARP   RMR+FYEGGFQ  MTRREAALILGVRES
Sbjct: 4   PMIAGAAVAAAAVAGRYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRES 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              +KVKEAHRRVMVANHPDAGGSHYLASKINEAKD+ML ++  S SAF
Sbjct: 64  VVADKVKEAHRRVMVANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBN8|TIM14_BOVIN Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 72/102 (70%), Gaps = 8/102 (7%)

Query: 11  GMAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILG 62
           G+ +AAA +AG+Y ++A         Q F++ P TA    +Y GGF+P MT+REAALILG
Sbjct: 9   GLTIAAAGFAGRYALQAMKHMEPQVKQVFQSLPKTAFSGGYYRGGFEPKMTKREAALILG 68

Query: 63  VRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           V  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 69  VSPTANKAKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Bos taurus (taxid: 9913)

>sp|Q5RF34|TIM14_PONAB Mitochondrial import inner membrane translocase subunit TIM14 OS=Pongo abelii GN=DNAJC19 PE=3 SV=3

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 8/102 (7%)

Query: 11  GMAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILG 62
           G+ +AAA +AG+Y ++A         Q F++ P +A    +Y GGF+P MT+REAALILG
Sbjct: 9   GLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILG 68

Query: 63  VRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           V  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 69  VSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Pongo abelii (taxid: 9601)

>sp|Q96DA6|TIM14_HUMAN Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens GN=DNAJC19 PE=1 SV=3

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 8/102 (7%)

Query: 11  GMAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILG 62
           G+ +AAA +AG+Y ++A         Q F++ P +A    +Y GGF+P MT+REAALILG
Sbjct: 9   GLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILG 68

Query: 63  VRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           V  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 69  VSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Homo sapiens (taxid: 9606)

>sp|Q5RCP4|DJC15_PONAB DnaJ homolog subfamily C member 15 OS=Pongo abelii GN=DNAJC15 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 73/113 (64%), Gaps = 8/113 (7%)

Query: 5   VAPLIA-GMAVAAAAYAGKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRRE 56
           V  LIA G+ VAA A+AG+Y  R W+  +        +  T  +  +Y+GGF+  M+RRE
Sbjct: 37  VRSLIAVGLGVAAFAFAGRYAFRIWKPLEQVITETAKKISTPSLSSYYKGGFEKKMSRRE 96

Query: 57  AALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
           A LILGV  S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct: 97  AGLILGVSPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Pongo abelii (taxid: 9601)

>sp|Q9Y5T4|DJC15_HUMAN DnaJ homolog subfamily C member 15 OS=Homo sapiens GN=DNAJC15 PE=1 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 72/113 (63%), Gaps = 8/113 (7%)

Query: 5   VAPLIA-GMAVAAAAYAGKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRRE 56
           V  LIA G+ VAA A+AG+Y  R W+  +        +  T     +Y+GGF+  M+RRE
Sbjct: 37  VRSLIAVGLGVAALAFAGRYAFRIWKPLEQVITETAKKISTPSFSSYYKGGFEQKMSRRE 96

Query: 57  AALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
           A LILGV  S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct: 97  AGLILGVSPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Homo sapiens (taxid: 9606)

>sp|Q78YY6|DJC15_MOUSE DnaJ homolog subfamily C member 15 OS=Mus musculus GN=Dnajc15 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 71/105 (67%), Gaps = 9/105 (8%)

Query: 8   LIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRK--------FYEGGFQPVMTRREAAL 59
           L  G+ VAA A+AG+Y  + W+  + +  TA  RK        +Y+GGF+  M++REA+L
Sbjct: 39  LAVGLGVAAVAFAGRYAFQIWKPLE-QVITATARKISSPSFSSYYKGGFEQKMSKREASL 97

Query: 60  ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           ILGV  S    K++ AH+R+M+ NHPD GGS YLASKINEAKD++
Sbjct: 98  ILGVSPSAGKAKIRTAHKRIMILNHPDKGGSPYLASKINEAKDLL 142

Mus musculus (taxid: 10090)

>sp|Q6PBT7|TIM14_DANRE Mitochondrial import inner membrane translocase subunit TIM14 OS=Danio rerio GN=dnajc19 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 9/102 (8%)

Query: 11  GMAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILG 62
           G+ +AAA + G+Y +RA         QA +A   +A    +Y GGF P M RREA+LILG
Sbjct: 9   GLTLAAAGFTGRYAVRAMKHMEPQVKQALEA-SKSAFGSGYYRGGFDPKMNRREASLILG 67

Query: 63  VRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           V  +    K++EAHR++M+ NHPD GGS YLA+KINEAKD++
Sbjct: 68  VSPTANKTKIREAHRKLMILNHPDRGGSPYLAAKINEAKDLL 109

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
224069344	112	predicted protein [Populus trichocarpa]	0.947	0.973	0.880	1e-49
18403957	112	chaperone DnaJ-domain containing protein	0.947	0.973	0.788	9e-45
242052047	112	hypothetical protein SORBIDRAFT_03g00540	0.947	0.973	0.788	6e-44
297823385	112	DNAJ heat shock N-terminal domain-contai	0.947	0.973	0.761	7e-44
195639528	112	mitochondrial import inner membrane tran	0.947	0.973	0.779	1e-43
414876263	112	TPA: import inner membrane translocase s	0.947	0.973	0.770	1e-43
239985483	112	mitochondrial import inner membrane tran	0.947	0.973	0.770	1e-43
115471001	114	Os07g0192300 [Oryza sativa Japonica Grou	0.973	0.982	0.767	1e-43
168040967	112	predicted protein [Physcomitrella patens	0.947	0.973	0.798	2e-43
326498039	112	predicted protein [Hordeum vulgare subsp	0.947	0.973	0.770	5e-43

>gi|224069344|ref|XP_002326335.1| predicted protein [Populus trichocarpa] gi|222833528|gb|EEE72005.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 101/109 (92%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLI GMAVAA AYAG+YGI+AWQAFKARPPTARMRKFYEGGFQ VMTRREAALILGVRES
Sbjct: 4   PLIMGMAVAATAYAGRYGIQAWQAFKARPPTARMRKFYEGGFQSVMTRREAALILGVRES 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
           T  +KVKEAHRRVMVANHPDAGGSHYLASKINEAKDI+L +TKG  SAF
Sbjct: 64  TAADKVKEAHRRVMVANHPDAGGSHYLASKINEAKDILLGKTKGGGSAF 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403957|ref|NP_565824.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|75330641|sp|Q8RV04.1|TI141_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM14-1; AltName: Full=Chaperone DnaJ-domain containing protein 1 gi|20197532|gb|AAM15117.1| expressed protein [Arabidopsis thaliana] gi|20197993|gb|AAM15345.1| expressed protein [Arabidopsis thaliana] gi|21536803|gb|AAM61135.1| DNAJ protein-like [Arabidopsis thaliana] gi|110737575|dbj|BAF00729.1| hypothetical protein [Arabidopsis thaliana] gi|114050699|gb|ABI49499.1| At2g35795 [Arabidopsis thaliana] gi|330254068|gb|AEC09162.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 97/109 (88%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           P IAG+AVAA A AG+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES
Sbjct: 4   PFIAGVAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRES 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 64  VAAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052047|ref|XP_002455169.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor] gi|241927144|gb|EES00289.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 96/109 (88%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLIAG+AVAA A AG+YGI+AWQA+KARP   RMRKFYEGGFQP+M RREAALILGVRE+
Sbjct: 4   PLIAGLAVAATALAGRYGIQAWQAYKARPIVPRMRKFYEGGFQPMMNRREAALILGVRET 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 64  ANAEKVKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823385|ref|XP_002879575.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325414|gb|EFH55834.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 97/109 (88%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           P IAG+AVAA A AG+YGI+AWQAFKARPP  +++KFY+GGFQP MT+REAALILG+R+S
Sbjct: 4   PFIAGVAVAATALAGRYGIQAWQAFKARPPRPKIKKFYDGGFQPTMTKREAALILGIRQS 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 64  VAAEKVKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195639528|gb|ACG39232.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 95/109 (87%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLIAG+AVAA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+
Sbjct: 4   PLIAGLAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRET 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 64  ANAEKVKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414876263|tpg|DAA53394.1| TPA: import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 95/109 (87%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLIAG+A+AA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+
Sbjct: 4   PLIAGLAIAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRET 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 64  ANAEKVKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239985483|ref|NP_001146932.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays] gi|195605332|gb|ACG24496.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 95/109 (87%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLIAG+AVAA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+
Sbjct: 4   PLIAGLAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRET 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              EKVKEAH+RVM+ANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 64  ANAEKVKEAHKRVMIANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115471001|ref|NP_001059099.1| Os07g0192300 [Oryza sativa Japonica Group] gi|113610635|dbj|BAF21013.1| Os07g0192300, partial [Oryza sativa Japonica Group]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 95/112 (84%)

Query: 4   QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGV 63
           Q  PLIAG+ VAAAA AG+Y I+AW A+KARP   RMRKFYEGGFQP MTRREA LILGV
Sbjct: 3   QATPLIAGLTVAAAALAGRYSIQAWNAYKARPVVPRMRKFYEGGFQPTMTRREAGLILGV 62

Query: 64  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
           RE+   EKVKEAH++VMVANHPDAGGSHYLASKINEAKDI+L +TKG  SAF
Sbjct: 63  RENAHPEKVKEAHKKVMVANHPDAGGSHYLASKINEAKDILLGKTKGGGSAF 114

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168040967|ref|XP_001772964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675697|gb|EDQ62189.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 95/109 (87%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           P IAG++VAAAA AGKY I AWQAFKARP TARMRKFYEGGFQPVMTRREAALILGVRES
Sbjct: 4   PFIAGLSVAAAAMAGKYSIEAWQAFKARPATARMRKFYEGGFQPVMTRREAALILGVRES 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              +KVKEAHRRVM ANHPDAGGS ++ASKINEAKD +L + +GS SAF
Sbjct: 64  AAQDKVKEAHRRVMQANHPDAGGSDFIASKINEAKDHLLGQKRGSGSAF 112

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326498039|dbj|BAJ94882.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326498277|dbj|BAJ98566.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507336|dbj|BAJ95745.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 95/109 (87%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 66
           PLIAG+AVAA A AG+YGI+AWQA+KARP   RMRKFYEGGFQ  MTRREA LILG+RE+
Sbjct: 4   PLIAGLAVAATALAGRYGIQAWQAYKARPIVPRMRKFYEGGFQATMTRREAGLILGIREN 63

Query: 67  TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
              +KVKEAH+RVMVANHPDAGGSHYLASKINEAKD++L +TKG  SAF
Sbjct: 64  VRPDKVKEAHKRVMVANHPDAGGSHYLASKINEAKDVLLGKTKGGGSAF 112

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2828254	112	AT2G35795 [Arabidopsis thalian	0.826	0.848	0.8	2.6e-38
TAIR|locus:2075004	112	AT3G09700 "AT3G09700" [Arabido	0.826	0.848	0.831	1.5e-37
TAIR|locus:2143488	112	AT5G03030 "AT5G03030" [Arabido	0.826	0.848	0.8	2.7e-36
UNIPROTKB|Q3ZBN8	116	DNAJC19 "Mitochondrial import	0.704	0.698	0.543	7.2e-20
UNIPROTKB|Q96DA6	116	DNAJC19 "Mitochondrial import	0.704	0.698	0.530	2.5e-19
UNIPROTKB|F1SGA9	116	DNAJC19 "Uncharacterized prote	0.704	0.698	0.530	2.5e-19
ZFIN|ZDB-GENE-040801-216	149	dnajc15 "DnaJ (Hsp40) homolog,	0.730	0.563	0.494	6.5e-19
UNIPROTKB|E1BXD6	148	DNAJC15 "Uncharacterized prote	0.773	0.601	0.479	1.7e-18
UNIPROTKB|Q9Y5T4	150	DNAJC15 "DnaJ homolog subfamil	0.773	0.593	0.468	2.8e-18
UNIPROTKB|A1A4R3	149	DNAJC15 "Uncharacterized prote	0.773	0.597	0.468	3.6e-18

TAIR|locus:2828254 AT2G35795 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 76/95 (80%), Positives = 86/95 (90%)

Query:    21 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 80
             G+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES   EKVKEAHR+VM
Sbjct:    18 GRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEKVKEAHRKVM 77

Query:    81 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
             VANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct:    78 VANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2075004 AT3G09700 "AT3G09700" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 79/95 (83%), Positives = 81/95 (85%)

Query:    21 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 80
             GKYGI AWQAFK RP   RMRKFYEGGFQ  M RREAALILGVRES   EKVKEAHRRVM
Sbjct:    18 GKYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVM 77

Query:    81 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
             VANHPDAGGSHYLASKINEAKD+ML +TK S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2143488 AT5G03030 "AT5G03030" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/95 (80%), Positives = 82/95 (86%)

Query:    21 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 80
             G+YGI AWQAFKARP   RMR+FYEGGFQ  MTRREAALILGVRES   +KVKEAHRRVM
Sbjct:    18 GRYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRESVVADKVKEAHRRVM 77

Query:    81 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 115
             VANHPDAGGSHYLASKINEAKD+ML ++  S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q3ZBN8 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/81 (54%), Positives = 60/81 (74%)

Query:    29 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 88
             Q F++ P TA    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGVSPTANKAKIRDAHRRIMLLNHPDKG 94

Query:    89 GSHYLASKINEAKDIMLRRTK 109
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q96DA6 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query:    29 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 88
             Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    89 GSHYLASKINEAKDIMLRRTK 109
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0007601 "visual perception" evidence=IMP

GO:0016021 "integral to membrane" evidence=NAS

GO:0006626 "protein targeting to mitochondrion" evidence=NAS;TAS

GO:0048806 "genitalia development" evidence=IMP

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SGA9 DNAJC19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query:    29 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 88
             Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    89 GSHYLASKINEAKDIMLRRTK 109
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0048806 "genitalia development" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-040801-216 dnajc15 "DnaJ (Hsp40) homolog, subfamily C, member 15" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query:    21 GKYGIRAWQAF------KARP-PTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 73
             G+Y    W+         A+  P++    +Y+GGF+  MTRREA+LILG+  ++   KV+
Sbjct:    53 GRYAFHLWRPLGQVITEAAKKFPSSSFSAYYKGGFEQKMTRREASLILGISPTSTKTKVR 112

Query:    74 EAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
             EAHRR+MV NHPD GGS YLA+KINEAKD++
Sbjct:   113 EAHRRIMVLNHPDKGGSPYLAAKINEAKDLL 143

GO:0048793 "pronephros development" evidence=IEA

UNIPROTKB|E1BXD6 DNAJC15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/96 (47%), Positives = 63/96 (65%)

Query:    21 GKYGIRAWQAF-KARPPTAR------MRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 73
             G+Y    W+   +A   TA+      +  +Y+GGF+  M+RREA+LILGV  S    K++
Sbjct:    52 GRYAFHLWKPLGQAITETAKKISTSSLSLYYKGGFEQKMSRREASLILGVSPSADKAKIR 111

Query:    74 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
              AHRR+M+ NHPD GGS YLA+KINEAKD++   TK
Sbjct:   112 AAHRRIMILNHPDKGGSPYLATKINEAKDLLESSTK 147

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y5T4 DNAJC15 "DnaJ homolog subfamily C member 15" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/96 (46%), Positives = 60/96 (62%)

Query:    21 GKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 73
             G+Y  R W+  +        +  T     +Y+GGF+  M+RREA LILGV  S    K++
Sbjct:    54 GRYAFRIWKPLEQVITETAKKISTPSFSSYYKGGFEQKMSRREAGLILGVSPSAGKAKIR 113

Query:    74 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
              AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct:   114 TAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A1A4R3 DNAJC15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:    21 GKYGIRAWQAF-KARPPTAR------MRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 73
             G+Y  + W+   +    TA+         +Y+GGF+  M+RREA+LILGV  S    K++
Sbjct:    53 GRYAFQIWKPLGQVITETAKKISTPSFSSYYKGGFEQKMSRREASLILGVSPSASKAKIR 112

Query:    74 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
              AHRR+M+ NHPD GGS YLA+KINEAKD++   TK
Sbjct:   113 AAHRRIMILNHPDKGGSPYLATKINEAKDLLEATTK 148

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYY2	TI143_ARATH	No assigned EC number	0.7981	0.9478	0.9732	no	no
Q5RF34	TIM14_PONAB	No assigned EC number	0.4901	0.8173	0.8103	yes	no
Q96DA6	TIM14_HUMAN	No assigned EC number	0.4901	0.8173	0.8103	yes	no
P91454	TIM14_CAEEL	No assigned EC number	0.4705	0.8434	0.8660	yes	no
Q5B4H1	TIM14_EMENI	No assigned EC number	0.5	0.8695	0.9523	yes	no
Q3ZBN8	TIM14_BOVIN	No assigned EC number	0.5	0.8173	0.8103	yes	no
Q4WI88	TIM14_ASPFU	No assigned EC number	0.5157	0.8086	0.8857	yes	no
Q54QN1	TIM14_DICDI	No assigned EC number	0.3893	0.9130	0.9292	yes	no
Q9SF33	TI142_ARATH	No assigned EC number	0.8297	0.8173	0.8392	no	no
Q8RV04	TI141_ARATH	No assigned EC number	0.7889	0.9478	0.9732	yes	no
Q9VTJ8	TIM14_DROME	No assigned EC number	0.4587	0.8434	0.8220	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	1e-22
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	5e-05
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-05
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	8e-05
pfam00226	63	pfam00226, DnaJ, DnaJ domain	0.003
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.003

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 84.9 bits (210), Expect = 1e-22
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 15/114 (13%)

Query: 7   PLIAGMAVAAAAYAGKYGIRAWQAFKARPPT--------------ARMRKFYEGGFQPVM 52
           P++A +       A +YG R  +  K                   +   K    GF+  M
Sbjct: 4   PIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPM 62

Query: 53  TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 106
           ++ EA  IL +  +   E+++EAH+++M+ NHPD GGS Y+ASK+NEAKD++L+
Sbjct: 63  SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116

Length = 116

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 52  MTRREAALILGVRESTPTEKVKEAHRRVMVANHPD---AGGSHYLASKINEAKDIMLRRT 108
           M +++   +LGV ++   +++++A+R++    HPD   +  +H    +INEA D++L + 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60

Query: 109 K 109
           K
Sbjct: 61  K 61

Length = 372

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 60  ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLAS-----KINEAKDIM 104
           ILGV      +++K+A+R++ +  HPD        +     +INEA +++
Sbjct: 6   ILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 37.1 bits (87), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 60  ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLA----SKINEAKDI 103
           ILGV      E++K+A+R++ +  HPD       A     +INEA ++
Sbjct: 5   ILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEV 52

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 60  ILGVRESTPTEKVKEAHRRVMVANHPD----AGGSHYLASKINEAKDI 103
           ILGV      E++K+A+R++ +  HPD       +     +INEA ++
Sbjct: 5   ILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEV 52

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 20/76 (26%)

Query: 35  PPTARMR------KFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 88
               R +      K YE              +L + +   T ++K+A+R++ + +HPD G
Sbjct: 16  FDGGRRKREVDNEKLYE--------------VLNLSKDCTTSEIKKAYRKLAIKHHPDKG 61

Query: 89  GSHYLASKINEAKDIM 104
           G      +I+ A +++
Sbjct: 62  GDPEKFKEISRAYEVL 77

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	99.97
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	99.94
PTZ00100	116	DnaJ chaperone protein; Provisional	99.94
KOG3442	132	consensus Uncharacterized conserved protein [Funct	99.87
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.67
PHA03102	153	Small T antigen; Reviewed	99.65
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.6
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.58
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.55
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.55
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.53
PRK14296	372	chaperone protein DnaJ; Provisional	99.52
PRK14288	369	chaperone protein DnaJ; Provisional	99.47
PRK14286	372	chaperone protein DnaJ; Provisional	99.46
PRK14299	291	chaperone protein DnaJ; Provisional	99.46
PRK14279	392	chaperone protein DnaJ; Provisional	99.46
PRK14287	371	chaperone protein DnaJ; Provisional	99.45
PRK14282	369	chaperone protein DnaJ; Provisional	99.44
PRK14276	380	chaperone protein DnaJ; Provisional	99.43
PRK14285	365	chaperone protein DnaJ; Provisional	99.42
PRK14298	377	chaperone protein DnaJ; Provisional	99.42
PRK14280	376	chaperone protein DnaJ; Provisional	99.42
PRK10767	371	chaperone protein DnaJ; Provisional	99.42
PRK14294	366	chaperone protein DnaJ; Provisional	99.42
PHA02624	647	large T antigen; Provisional	99.41
PRK14283	378	chaperone protein DnaJ; Provisional	99.41
PRK14297	380	chaperone protein DnaJ; Provisional	99.41
PRK14301	373	chaperone protein DnaJ; Provisional	99.41
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PRK14278	378	chaperone protein DnaJ; Provisional	99.4
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.4
PRK14295	389	chaperone protein DnaJ; Provisional	99.4
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.39
PRK14281	397	chaperone protein DnaJ; Provisional	99.39
PRK14277	386	chaperone protein DnaJ; Provisional	99.38
PRK14291	382	chaperone protein DnaJ; Provisional	99.36
PRK14300	372	chaperone protein DnaJ; Provisional	99.36
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.35
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.33
PRK14284	391	chaperone protein DnaJ; Provisional	99.33
PRK14292	371	chaperone protein DnaJ; Provisional	99.33
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.32
PRK14289	386	chaperone protein DnaJ; Provisional	99.32
PRK14290	365	chaperone protein DnaJ; Provisional	99.32
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.31
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.29
PRK14293	374	chaperone protein DnaJ; Provisional	99.26
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.19
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.17
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.14
PRK01356	166	hscB co-chaperone HscB; Provisional	99.11
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.11
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.11
PRK05014	171	hscB co-chaperone HscB; Provisional	99.11
PRK00294	173	hscB co-chaperone HscB; Provisional	99.05
PRK03578	176	hscB co-chaperone HscB; Provisional	99.04
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.0
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.94
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	98.82
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	98.81
PRK01773	173	hscB co-chaperone HscB; Provisional	98.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.65
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.61
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.59
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.53
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.51
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.4
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.66
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.53
PF13446	62	RPT: A repeated domain in UCH-protein	97.17
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.87
KOG0431	453	consensus Auxilin-like protein and related protein	96.2
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	95.74
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.41
PF02529	37	PetG: Cytochrome B6-F complex subunit 5; InterPro:	84.48
PRK00665	37	petG cytochrome b6-f complex subunit PetG; Reviewe	83.45
CHL00008	37	petG cytochrome b6/f complex subunit V	83.3

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.1e-30  Score=174.12  Aligned_cols=106  Identities=60%  Similarity=0.943  Sum_probs=99.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCchhhhhhhhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHH
Q 033628            4 QVAPLIAGMAVAAAAYAGKYGIR----AWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRV   79 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ra~~~----a~~~~~~~~~~~~~~~~~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L   79 (115)
                      |++++++|++|+++++.+|++++    +|+-.+..+..+.++.||+|+|++.||+.||..||||+++++.+.||++||++
T Consensus         1 ~~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrri   80 (112)
T KOG0723|consen    1 MVSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRI   80 (112)
T ss_pred             CchhHHHhHHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHH
Confidence            57899999999999999999999    77777777767788899999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628           80 MVANHPDAGGSHYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        80 ~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k  109 (115)
                      +..||||+|||||+.+||||||++|+...+
T Consensus        81 M~~NHPD~GGSPYlAsKINEAKdlLe~~~~  110 (112)
T KOG0723|consen   81 MLANHPDRGGSPYLASKINEAKDLLEGTSL  110 (112)
T ss_pred             HHcCCCcCCCCHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999986543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=99.94  E-value=1.2e-27  Score=167.14  Aligned_cols=106  Identities=27%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhh-hhh----hhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 033628            4 QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPT-ARM-RKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHR   77 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~-~~~-~~~----~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr   77 (115)
                      |+++++++++|.|+.+++|+|.+||||+..+.+. ... ...    ........||.+||++||||++..++++|.++|+
T Consensus         1 Ma~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~   80 (127)
T PF03656_consen    1 MAKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK   80 (127)
T ss_dssp             --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence            7899999999999999999999999998743321 111 111    0112345899999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628           78 RVMVANHPDAGGSHYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        78 ~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k  109 (115)
                      +|+..|+|++|||+|+++||.+|+|+|..+.+
T Consensus        81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997653

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.94  E-value=8e-26  Score=155.73  Aligned_cols=102  Identities=35%  Similarity=0.646  Sum_probs=87.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----------hhhhhhh----hCCCCCCCCHHHHHHHhCCCCCCCh
Q 033628            4 QVAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPT----------ARMRKFY----EGGFQPVMTRREAALILGVRESTPT   69 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~----------~~~~~~~----~~~~~~~m~~~eA~~iLgl~~~~~~   69 (115)
                      |+-|+++ +++.++.+++|+++++|++.+..+..          +..+.++    -.+++..|+.+|||+||||++++|.
T Consensus         1 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~   79 (116)
T PTZ00100          1 MMWPIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASK   79 (116)
T ss_pred             CcchHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCH
Confidence            5567777 99999999999999999876654432          1223433    4589999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 033628           70 EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR  106 (115)
Q Consensus        70 ~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~  106 (115)
                      +||+++||+|+++||||++||+|.+++|++|||+|.+
T Consensus        80 ~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~k  116 (116)
T PTZ00100         80 ERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK  116 (116)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999963

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=6e-22  Score=136.91  Aligned_cols=105  Identities=25%  Similarity=0.308  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhhh-------hhCCCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 033628            5 VAPLIAGMAVAAAAYAGKYGIRAWQAFKARPPTAR-MRKF-------YEGGFQPVMTRREAALILGVRESTPTEKVKEAH   76 (115)
Q Consensus         5 ~~~~~~~~~~~~~~~~~ra~~~a~~~~~~~~~~~~-~~~~-------~~~~~~~~m~~~eA~~iLgl~~~~~~~~Ik~~y   76 (115)
                      ++|.++++||+|+.+++|+|.+||||..++..... .+..       -.......||.+||++||||++..+.++|.++|
T Consensus         1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y   80 (132)
T KOG3442|consen    1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY   80 (132)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence            36899999999999999999999999865442211 1111       111223559999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628           77 RRVMVANHPDAGGSHYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        77 r~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k  109 (115)
                      .+|+..|.|.+|||+|+++||.+|+|+|..+.+
T Consensus        81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987765

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.5e-17  Score=130.22  Aligned_cols=60  Identities=30%  Similarity=0.432  Sum_probs=55.0

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |...+.|+||||+.++|.+|||++||+|+++||||++. +   .+.|++|++|||+|.|++||+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa   64 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA   64 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            34567899999999999999999999999999999986 4   478999999999999999986

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=3.6e-16  Score=112.47  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033628           53 TRREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      ..+|++++|||++++  |.++||++||++++++|||+||+++.+++||+||++|.++.+|..
T Consensus         3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence            468999999999999  999999999999999999999999999999999999999988765

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.60  E-value=1.4e-15  Score=124.23  Aligned_cols=64  Identities=20%  Similarity=0.340  Sum_probs=59.1

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 033628           48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ....|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|.++.||+
T Consensus        21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~   84 (421)
T PTZ00037         21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK   84 (421)
T ss_pred             ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence            3455667899999999999999999999999999999999999999999999999999999874

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.58  E-value=5.5e-15  Score=89.37  Aligned_cols=53  Identities=26%  Similarity=0.395  Sum_probs=49.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcccc
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDIMLRRT  108 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-----s~~~~~ki~~Ay~~L~~~~  108 (115)
                      ++|++|||+++++.++|+++|+++++.+|||+++     +.+.+.+|++||++|.++.
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999999988     3578999999999999874

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4.1e-15  Score=117.60  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHhcccccCC
Q 033628           51 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-H---YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-~---~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..+.++.|+||||+.+++..|||++||+|++++|||||.+ |   +.|++|+.||++|+|+.+|.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3455788999999999999999999999999999999863 3   78999999999999999885

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.55  E-value=1.3e-14  Score=86.22  Aligned_cols=51  Identities=29%  Similarity=0.414  Sum_probs=47.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLR  106 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~  106 (115)
                      ++|++|||+++++.++|+++|++|++.+|||++++    ...+.+|++||++|.+
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            36999999999999999999999999999999874    5789999999999974

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.53  E-value=2.3e-14  Score=87.95  Aligned_cols=56  Identities=30%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg-gs~----~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++|+||||+++++.++|+++|+++++.+|||+. ++.    +.+..|++||++|.++.+|.
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence            579999999999999999999999999999995 455    78999999999999987764

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.1e-14  Score=117.01  Aligned_cols=60  Identities=28%  Similarity=0.514  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |+..++|+||||++++|.+|||++||+|++++|||++.   ..+.|++|++||++|.|+.||+
T Consensus         1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~   63 (372)
T PRK14296          1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK   63 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence            44468899999999999999999999999999999975   3478999999999999999885

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=3.9e-14  Score=113.80  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||++++|.+|||++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~   63 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA   63 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence            46799999999999999999999999999999975 3   378999999999999998874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=4.8e-14  Score=113.37  Aligned_cols=60  Identities=30%  Similarity=0.389  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |+..++|+||||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|.++.+|.
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   64 (372)
T PRK14286          1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ   64 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            44468899999999999999999999999999999975 3   478999999999999998874

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=6.2e-14  Score=109.41  Aligned_cols=59  Identities=27%  Similarity=0.399  Sum_probs=53.1

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKG  110 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr  110 (115)
                      |+..++|+||||++++|.+||+++||+|++++|||++.+   .+.+++|++||++|.++.+|
T Consensus         1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr   62 (291)
T PRK14299          1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR   62 (291)
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHH
Confidence            445688999999999999999999999999999999864   47899999999999998776

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=7.5e-14  Score=112.99  Aligned_cols=58  Identities=26%  Similarity=0.359  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..+.|+||||+++++.+|||++||+|++++|||+++ +   .+.|++|++||++|.|+.||+
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~   69 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK   69 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            368899999999999999999999999999999975 3   378999999999999999884

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=8.1e-14  Score=112.03  Aligned_cols=59  Identities=25%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...++|++|||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~   63 (371)
T PRK14287          2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA   63 (371)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence            34578999999999999999999999999999999854   368999999999999998874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1e-13  Score=111.34  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=53.5

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |...+.|+||||++++|.+||+++||+|++++|||++..     .+.|++|++||++|.++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   65 (369)
T PRK14282          1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA   65 (369)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence            344578999999999999999999999999999999752     368999999999999998875

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.43  E-value=1.4e-13  Score=110.98  Aligned_cols=59  Identities=22%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +..++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   63 (380)
T PRK14276          2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA   63 (380)
T ss_pred             CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence            34588999999999999999999999999999999754   478999999999999998874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=1.8e-13  Score=109.82  Aligned_cols=57  Identities=23%  Similarity=0.459  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||++++|.+||+++||+|++++|||+++ +   .+.|++|++||++|.++.+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA   63 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence            47899999999999999999999999999999975 3   367999999999999998874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=2.2e-13  Score=109.79  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=52.8

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..++|+||||++++|.+||+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~   64 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA   64 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence            3588999999999999999999999999999999854   368899999999999998875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=1.8e-13  Score=110.14  Aligned_cols=60  Identities=27%  Similarity=0.416  Sum_probs=53.7

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |...++|+||||++++|.++|+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (376)
T PRK14280          1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA   63 (376)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence            334688999999999999999999999999999999753   478999999999999998874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=1.9e-13  Score=109.62  Aligned_cols=60  Identities=25%  Similarity=0.423  Sum_probs=53.3

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~---~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |+..++|+||||++++|.++|+++||+|++++|||+++ ++   +.|++|++||++|.++.+|.
T Consensus         1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (371)
T PRK10767          1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA   64 (371)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence            34468899999999999999999999999999999975 33   68899999999999988764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=1.7e-13  Score=109.84  Aligned_cols=60  Identities=27%  Similarity=0.416  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |+..++|+||||++++|.+||+++||+|++++|||++++    .+.|++|++||++|.++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~   64 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG   64 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            455688999999999999999999999999999999863    378999999999999998774

>PHA02624 large T antigen; Provisional

Probab=99.41  E-value=3.7e-13  Score=113.94  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 033628           54 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS  113 (115)
Q Consensus        54 ~~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~~  113 (115)
                      .+++|++|||++++  +.++||++||++++++|||+||+++.+++|++||++|.++.++.+.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            56899999999999  9999999999999999999999999999999999999998887764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=2.3e-13  Score=109.59  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..+.|++|||++++|.+||+++||+|++++|||++.   ..+.|++|++||++|.++.+|.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~   64 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ   64 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence            458899999999999999999999999999999974   4578999999999999998864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=2.8e-13  Score=109.08  Aligned_cols=58  Identities=22%  Similarity=0.410  Sum_probs=52.8

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..++|++|||++++|.++|+++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   64 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA   64 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence            358899999999999999999999999999999975 2   368999999999999998875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=2.6e-13  Score=109.17  Aligned_cols=59  Identities=22%  Similarity=0.378  Sum_probs=53.1

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +..++|+||||++++|.++|+++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         2 ~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   64 (373)
T PRK14301          2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA   64 (373)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            3468899999999999999999999999999999975 3   358999999999999998874

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.2e-13  Score=108.38  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=51.8

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..|+||||+++++.+|||++||+|+++|||||+.+. +.|++|.+|||+|.|+.||.
T Consensus         5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            358999999999999999999999999999999865 89999999999999988863

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=2.4e-13  Score=109.52  Aligned_cols=57  Identities=23%  Similarity=0.305  Sum_probs=52.2

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~---~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||++++|.++|+++||+|++++|||+++++   +.|++|++||++|.++.+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   62 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR   62 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence            4689999999999999999999999999999998764   57899999999999988874

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.40  E-value=2.9e-13  Score=106.25  Aligned_cols=60  Identities=22%  Similarity=0.353  Sum_probs=53.6

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      |+..+.|++|||++++|.++|+++||+|++++|||++.   ....|++|++||++|.++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence            44468899999999999999999999999999999975   4578999999999999988763

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=3.6e-13  Score=108.94  Aligned_cols=57  Identities=26%  Similarity=0.388  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence            58899999999999999999999999999999975 2   378999999999999998764

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.39  E-value=9.6e-13  Score=101.93  Aligned_cols=58  Identities=31%  Similarity=0.426  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHhccc
Q 033628           50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG---G-SH-------YLASKINEAKDIMLRR  107 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg---g-s~-------~~~~ki~~Ay~~L~~~  107 (115)
                      ..++.++||++|||++++|.++||++||+|+++||||+.   | ++       +.+++|++||++|++.
T Consensus       195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            368899999999999999999999999999999999994   2 22       5789999999999863

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.39  E-value=4.8e-13  Score=108.39  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||+++++.++|+++||+|++++|||++++    .+.+++|++||++|.++.+|+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   63 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR   63 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence            478999999999999999999999999999999863    478999999999999988764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.38  E-value=4.5e-13  Score=108.15  Aligned_cols=57  Identities=32%  Similarity=0.413  Sum_probs=52.0

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||++++|.++|+++||+|++++|||++. +   .+.|++|++||++|.++.+|.
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   65 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA   65 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58899999999999999999999999999999975 3   368999999999999998774

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=9.3e-13  Score=106.22  Aligned_cols=57  Identities=30%  Similarity=0.384  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||+++++.++|+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~   62 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK   62 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            467999999999999999999999999999999853   478999999999999998774

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=1e-12  Score=105.60  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||++++|.+||+++||+|++++|||++.+   .+.+++|++||++|.++.+|+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~   62 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA   62 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence            478999999999999999999999999999999753   468999999999999988764

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.2e-12  Score=98.62  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=53.2

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk----ggs~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..-+.++||||+++++..|||++||+|..++||||    +++.+.+..|+.||+.|.|...|-
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sre  159 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRE  159 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHH
Confidence            33466999999999999999999999999999999    678899999999999999887653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.33  E-value=1.7e-12  Score=103.50  Aligned_cols=55  Identities=29%  Similarity=0.383  Sum_probs=50.6

Q ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           57 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        57 A~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .|+||||+++++.++|+++||+|++++|||++.+   .+.|++|++||++|.++.+|.
T Consensus         2 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   59 (354)
T TIGR02349         2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA   59 (354)
T ss_pred             hHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence            6899999999999999999999999999999853   478999999999999988764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=1.7e-12  Score=104.97  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=51.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||++++|.++||++||+|++++|||++.+    .+.|++|++||++|.++.+|.
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   61 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE   61 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence            57999999999999999999999999999999863    468999999999999988763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=2.3e-12  Score=103.47  Aligned_cols=56  Identities=25%  Similarity=0.383  Sum_probs=51.6

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||++++|.++|+++||+|++++|||++++   .+.+++|++||++|.++.+|+
T Consensus         3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~   61 (371)
T PRK14292          3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA   61 (371)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            57999999999999999999999999999999864   478899999999999998874

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.9e-12  Score=105.03  Aligned_cols=60  Identities=18%  Similarity=0.311  Sum_probs=54.5

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ......|++|||+.+++.++|+.+||+|++++|||++++     .+.|+.|+.||++|.+++.|+
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~   69 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA   69 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence            355788999999999999999999999999999999875     378999999999999998874

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=1.9e-12  Score=104.49  Aligned_cols=59  Identities=25%  Similarity=0.383  Sum_probs=53.0

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...++|++|||++++|.+||+++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   65 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS   65 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3468899999999999999999999999999999975 3   368999999999999998775

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=2.4e-12  Score=103.27  Aligned_cols=57  Identities=26%  Similarity=0.344  Sum_probs=51.6

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||++++|.+||+++||+|++++|||++.+     .+.|++|++||++|.++.+|.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR   64 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence            467999999999999999999999999999999753     278899999999999988774

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=5.3e-12  Score=97.64  Aligned_cols=59  Identities=27%  Similarity=0.405  Sum_probs=53.9

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...+-|.+|||.++++.++||++||+|++++|||++|+    +..|..||.||++|.|..+|.
T Consensus        29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence            36788999999999999999999999999999999875    378999999999999998873

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.1e-12  Score=100.15  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628           50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+++.+++|+||||+++++..|||.+|++|++++|||.+-   ....|++|.+|||+|.++.||.
T Consensus        38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence            4455558999999999999999999999999999999864   4578999999999999998874

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=5.7e-12  Score=101.37  Aligned_cols=57  Identities=25%  Similarity=0.329  Sum_probs=51.8

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||++++|.++|+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence            367999999999999999999999999999999753   478999999999999998874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.9e-11  Score=99.48  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=53.9

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...|.|.+|||++++|.+||+++||++...+||||.-|+       +.|++|.+|||+|.|+++|.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa   72 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA   72 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            345899999999999999999999999999999998755       67999999999999999874

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.7e-11  Score=85.37  Aligned_cols=59  Identities=27%  Similarity=0.340  Sum_probs=52.9

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~----~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...+.|+||||.++++.++|+++||++++++|||+++ ++    +.+..|++||++|.++.+|.
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~   67 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA   67 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence            3467899999999999999999999999999999975 33    78999999999999988764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.4e-11  Score=93.06  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s~---~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..|.|.|||++++++..+|+++|+..++++|||||. +|   +.|+++.+||++|.++..|.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~   65 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA   65 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            468899999999999999999999999999999985 54   78999999999999988764

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.11  E-value=1e-10  Score=85.11  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|++|||++.  +|.++|+++|++|.+++|||+..+.       +.+..||+||++|.++.+|+
T Consensus         3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra   67 (166)
T PRK01356          3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA   67 (166)
T ss_pred             CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46899999997  7899999999999999999997543       23579999999999998875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.11  E-value=8.5e-11  Score=103.47  Aligned_cols=59  Identities=22%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...+.|+||||++++|..+||++||+|++++|||++.+   ...|++|++||++|.++.+|.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk  632 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK  632 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence            34688999999999999999999999999999999863   367999999999999999885

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.11  E-value=8.2e-11  Score=101.56  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=51.6

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~---~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||+++++.++|+++||+|++++|||++++.   ..+++|++||++|.++.+|+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa   61 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA   61 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            3679999999999999999999999999999998753   46899999999999988875

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.11  E-value=1.4e-10  Score=84.76  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..|++|||++.  +|..+|+++|++|.+.+|||+..  ++       ..++.||+||++|.++.+|+
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra   68 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA   68 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence            46899999996  78899999999999999999943  22       35678999999999999876

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.05  E-value=2.7e-10  Score=83.46  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             HHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s-------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ....+++|||++.  ++.++|+++|++|.+++|||+..  +       ...++.||+||++|.++.+|+
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            3457999999998  78899999999999999999953  2       135788999999999999886

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.04  E-value=3.3e-10  Score=83.16  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             HHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...+++|||++.  ++..+|+++|++|.+++|||+..  +.       ..++.||+||++|.++.+|+
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra   73 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA   73 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence            578999999996  68999999999999999999954  22       23578999999999999875

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.6e-10  Score=86.23  Aligned_cols=56  Identities=18%  Similarity=0.323  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg------s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||..+++..+|+++|++|.+++|||++.      ....|+.++.||.+|.++.+|+
T Consensus        15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~   76 (264)
T KOG0719|consen   15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA   76 (264)
T ss_pred             CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7899999999999999999999999999999983      3478999999999999988774

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.1e-09  Score=93.26  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHhCCCCC----CChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhc
Q 033628           50 PVMTRREAALILGVRES----TPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIML  105 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~----~~~~~Ik~~yr~L~~~~HPDkgg-s~~~~~ki~~Ay~~L~  105 (115)
                      ..|+.++||+||+++-+    .++++||++|++|+.+||||||+ .-+.|.++|+|||+|.
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            46899999999999965    45699999999999999999997 4589999999999998

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.4e-09  Score=82.99  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=51.8

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++.|++|||+.+.++.+|.++||+|+.+||||++.+   ..+|.+|..||++|.++..|.
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt   92 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT   92 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence            4788999999999999999999999999999999754   368999999999999876554

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.3e-09  Score=87.16  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+||.+|||.+++|.++||+.||+++...|||||-.   .+.|+++..|||+|.+..+|.
T Consensus       235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~  294 (490)
T KOG0720|consen  235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK  294 (490)
T ss_pred             CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            478999999999999999999999999999999865   488999999999999888764

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.74  E-value=1.3e-08  Score=74.59  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=48.7

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--CH-------HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--SH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg--s~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.+++|||++.  ++...++++|+.|.+.+|||+-.  ++       +..+.||+||.+|+++.+|+
T Consensus         3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA   69 (173)
T PRK01773          3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA   69 (173)
T ss_pred             ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence            46899999997  89999999999999999999842  22       45688999999999999876

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.8e-08  Score=82.49  Aligned_cols=60  Identities=27%  Similarity=0.426  Sum_probs=53.9

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CC----HHHHHHHHHHHHHhcccccCCCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GS----HYLASKINEAKDIMLRRTKGSNS  113 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg-gs----~~~~~ki~~Ay~~L~~~~kr~~~  113 (115)
                      +.++|.|||+..+++.++|+++||++.+.||||++ |+    .-.|+++-+||.+|.++.+|.+.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~  436 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF  436 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence            56889999999999999999999999999999997 45    35789999999999999988764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.65  E-value=3.4e-08  Score=79.89  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=53.0

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-------~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      ..++.|+||||..++++.||.++||+|+.+.|||.--+.       ..|.-|..|+|+|.++.+|.+
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq  458 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ  458 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence            457899999999999999999999999999999986554       357779999999999998753

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.61  E-value=6.2e-08  Score=69.88  Aligned_cols=45  Identities=16%  Similarity=0.114  Sum_probs=38.8

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 033628           67 TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        67 ~~~~~Ik~~yr~L~~~~HPDkgg--s-------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++..+|+++|++|.+.+|||+..  +       ...++.||+||++|.++.+|+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra   56 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA   56 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence            57899999999999999999832  2       256789999999999999886

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.59  E-value=1.5e-07  Score=77.90  Aligned_cols=55  Identities=20%  Similarity=0.307  Sum_probs=48.6

Q ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 033628           57 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        57 A~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .|+|||++.+++..+||++||+|..++||||-..         .+....|+.||+.|.+...|.
T Consensus       100 PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re  163 (610)
T COG5407         100 PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE  163 (610)
T ss_pred             hHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3999999999999999999999999999999543         256788999999999887664

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7.1e-08  Score=72.44  Aligned_cols=57  Identities=28%  Similarity=0.397  Sum_probs=49.7

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-----~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+++.|||+..+++.++|+++|+++++.+|||++.+.     ..+.+|.+||++|.++.+|.
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~   64 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK   64 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence            4789999999999888999999999999999997554     34678889999999888765

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.8e-07  Score=70.91  Aligned_cols=52  Identities=33%  Similarity=0.404  Sum_probs=47.5

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhc
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIML  105 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~  105 (115)
                      ..|.+.|||++++++.++++++|.+|++++|||.|.   |...|.+|.+||..+.
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvl  100 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVL  100 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999985   6789999999999443

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=3.2e-07  Score=69.06  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HH----HHHHHHHHHHhcccc
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YL----ASKINEAKDIMLRRT  108 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-~~----~~ki~~Ay~~L~~~~  108 (115)
                      .+|++|.+++..+.++|+++||+|....|||+|.+. +.    |--|..||..|.++.
T Consensus        54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~  111 (250)
T KOG1150|consen   54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK  111 (250)
T ss_pred             ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence            579999999999999999999999999999999764 33    445788999888766

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=7.4e-05  Score=58.83  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=49.8

Q ss_pred             HHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCC---CC---CHHHHHHHHHHHHHhcccccCCC
Q 033628           55 REAALILGVRES---TPTEKVKEAHRRVMVANHPDA---GG---SHYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        55 ~eA~~iLgl~~~---~~~~~Ik~~yr~L~~~~HPDk---gg---s~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      .+-|.+|||+.-   ++.++|.+++++.+.+||||+   ||   ..+.|.-|..||++|.++.+|.+
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~q  109 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ  109 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhh
Confidence            567999999974   788999999999999999998   34   45788999999999999887753

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00011  Score=53.56  Aligned_cols=50  Identities=28%  Similarity=0.441  Sum_probs=42.2

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDA---GGSH--------YLASKINEAKDIM  104 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDk---ggs~--------~~~~ki~~Ay~~L  104 (115)
                      .++|.+||++...+..+|+++|+.++..+|||+   -|++        ..+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999998   3433        4456677777754

>PF13446 RPT: A repeated domain in UCH-protein

Probab=97.17  E-value=0.0027  Score=38.64  Aligned_cols=48  Identities=23%  Similarity=0.260  Sum_probs=37.7

Q ss_pred             CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q 033628           51 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIML  105 (115)
Q Consensus        51 ~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~  105 (115)
                      .|+.++||++||++++.+.+.|-..|+.... .      +|.......+|-..|-
T Consensus         1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~------~P~~~~~~r~AL~~Ia   48 (62)
T PF13446_consen    1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-D------DPSQKDTLREALRVIA   48 (62)
T ss_pred             CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-c------ChHhHHHHHHHHHHHH
Confidence            3899999999999999999999999999888 2      3344455566655554

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.0018  Score=47.03  Aligned_cols=60  Identities=22%  Similarity=0.254  Sum_probs=49.0

Q ss_pred             CHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcccccCCC
Q 033628           53 TRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        53 ~~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkgg-------s--~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      +....+.++|.+..  ++++.+...|-...+..|||+.+       +  .+...++|+||+.|.++..|++
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~   76 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARAR   76 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            45677899988875  78888888999999999999843       2  2557889999999999988763

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.20  E-value=0.0056  Score=51.01  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             CCChHHHHHHHHHHHHHhCCCCC-C---CH---HHHHHHHHHHHH
Q 033628           66 STPTEKVKEAHRRVMVANHPDAG-G---SH---YLASKINEAKDI  103 (115)
Q Consensus        66 ~~~~~~Ik~~yr~L~~~~HPDkg-g---s~---~~~~ki~~Ay~~  103 (115)
                      -++.+.||++|||..+..||||- +   +.   |++.+|+.++..
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~e  443 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSE  443 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHH
Confidence            37899999999999999999992 2   22   666776665543

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=95.74  E-value=0.014  Score=43.52  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=36.0

Q ss_pred             CCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccc
Q 033628           64 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR  107 (115)
Q Consensus        64 ~~~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~  107 (115)
                      +++++.|||++++.++..+|    +|++....+|..|||.|.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999    89999999999999988743

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.052  Score=39.48  Aligned_cols=45  Identities=20%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             CChHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcccccCC
Q 033628           67 TPTEKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        67 ~~~~~Ik~~yr~L~~~~HPDkggs~---------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.+.++..|+.+...+|||+.++.         ..+..+|.||..|+++.+|+
T Consensus        15 ~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra   68 (174)
T COG1076          15 IDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA   68 (174)
T ss_pred             HHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3567889999999999999996532         34567999999999887654

>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG)

Probab=84.48  E-value=3  Score=23.13  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628            4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP   35 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~   35 (115)
                      |+-|++.|+++..-.++ .-.|+.||.|+++..
T Consensus         1 MvEplL~GiVlGli~vtl~Glfv~Ay~QY~Rg~   33 (37)
T PF02529_consen    1 MVEPLLSGIVLGLIPVTLAGLFVAAYLQYRRGN   33 (37)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred             CCchhhhhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence            56788888888766664 667889999987654

The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.

>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed

Probab=83.45  E-value=3.1  Score=23.05  Aligned_cols=32  Identities=19%  Similarity=0.479  Sum_probs=22.9

Q ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628            4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP   35 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~   35 (115)
                      |+-|++.|+++..--+. .-.|+.||.|+++..
T Consensus         1 MvEplL~GiVLGlipiTl~GlfvaAylQYrRg~   33 (37)
T PRK00665          1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQYKRGN   33 (37)
T ss_pred             CcchhhhhHHHHhHHHHHHHHHHHHHHHHhccc
Confidence            55677888777655544 667889999987644

>CHL00008 petG cytochrome b6/f complex subunit V

Probab=83.30  E-value=3.2  Score=22.99  Aligned_cols=32  Identities=9%  Similarity=0.229  Sum_probs=23.0

Q ss_pred             chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 033628            4 QVAPLIAGMAVAAAAYA-GKYGIRAWQAFKARP   35 (115)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~ra~~~a~~~~~~~~   35 (115)
                      |+-|++.|+++..--+. .-.|+.||.|+++..
T Consensus         1 MvE~lL~GiVLGlipvTl~GlfvaAylQYrRg~   33 (37)
T CHL00008          1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGD   33 (37)
T ss_pred             CcchhhhhHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence            56678888777655544 667889999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
2guz_A	71	Structure Of The Tim14-tim16 Complex Of The Mitocho		2e-16

>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial Protein Import Motor Length = 71

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 43  FYEGGFQPVMTRREAALILGVRESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAK 101
           F +GGF P M  +EA  IL + E+T T+K +KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 2   FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61
Query: 102 DIMLRR 107
           D + +R
Sbjct: 62  DFLEKR 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
2guz_A	71	Mitochondrial import inner membrane translocase su	3e-31
2guz_B	65	Mitochondrial import inner membrane translocase su	6e-21
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-04
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-04

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score =  104 bits (261), Expect = 3e-31
 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 43  FYEGGFQPVMTRREAALILGVRESTPT-EKVKEAHRRVMVANHPDAGGSHYLASKINEAK 101
           F +GGF P M  +EA  IL + E+T T +K+KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 2   FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61

Query: 102 DIMLRRTK 109
           D + +R  
Sbjct: 62  DFLEKRGI 69

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65

 Score = 78.4 bits (193), Expect = 6e-21
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 52  MTRREAALILGVRESTPT---EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 108
           MT  E+  IL + ES      +K+      +   N  + GGS YL SK+  A + +    
Sbjct: 1   MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 60

Query: 109 K 109
            
Sbjct: 61  A 61

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 60  ILGV-RESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 109
           +L + R+       +++A+++  +  HPD GGSH L  ++N           
Sbjct: 16  LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVY 67

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 60  ILGV-RESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 104
           +LG+ R +      +++A+ +     HPD GG      K+N     M
Sbjct: 16  LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKM 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2guz_A	71	Mitochondrial import inner membrane translocase su	99.88
2guz_B	65	Mitochondrial import inner membrane translocase su	99.88
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.76
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.68
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.68
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.64
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.63
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.62
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.62
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.61
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.61
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.61
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.6
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.6
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.59
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.57
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.57
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.56
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.56
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.54
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.54
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.51
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.51
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.47
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.4
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.4
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.38
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.37
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.34
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.34
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.3
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.26
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.27

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5.3e-23  Score=129.39  Aligned_cols=69  Identities=51%  Similarity=0.851  Sum_probs=65.0

Q ss_pred             hhhhCCCCCCCCHHHHHHHhCCCC-CCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccC
Q 033628           42 KFYEGGFQPVMTRREAALILGVRE-STPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKG  110 (115)
Q Consensus        42 ~~~~~~~~~~m~~~eA~~iLgl~~-~~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr  110 (115)
                      .||.|++...|+.+|+|+||||++ ++|.++|+++||+|++++|||++|+++.|++|++||++|.++..|
T Consensus         1 ~~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A            1 GFLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            367899999999999999999999 799999999999999999999999999999999999999987654

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.7e-23  Score=128.74  Aligned_cols=58  Identities=29%  Similarity=0.420  Sum_probs=55.4

Q ss_pred             CCHHHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 033628           52 MTRREAALILGVRES---TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        52 m~~~eA~~iLgl~~~---~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~k  109 (115)
                      ||.+||++||||+++   ++.++|+++||+|+..||||+|||+|++++||+|+++|..+.+
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~   61 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELA   61 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999   8999999999999999999999999999999999999987654

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.76  E-value=6e-19  Score=112.96  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=58.1

Q ss_pred             CCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q 033628           52 MTRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSA  114 (115)
Q Consensus        52 m~~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~~~  114 (115)
                      .+..++|+||||+++  ++.++|+++||+|++++|||++|+.+.|++|++||++|.++.+|.+..
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            345789999999999  999999999999999999999999999999999999999988876643

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.68  E-value=9.5e-17  Score=104.82  Aligned_cols=62  Identities=13%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccccc
Q 033628           48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~k  109 (115)
                      ...+++..++|+||||+++++.++|+++||+|++++|||++++     .+.|++|++||++|.+...
T Consensus         9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~   75 (88)
T 1iur_A            9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            3567889999999999999999999999999999999999875     4789999999999998654

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=6.4e-17  Score=105.56  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=55.0

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhcccccCCCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAG---GSHYLASKINEAKDIMLRRTKGSNS  113 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg---gs~~~~~ki~~Ay~~L~~~~kr~~~  113 (115)
                      .++|+||||+++++.++|+++||+|++++|||++   +..+.|++|++||++|.++.+|+.+
T Consensus        27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence            5789999999999999999999999999999998   5678999999999999999998765

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.5e-16  Score=103.52  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           48 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        48 ~~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ....|+..++|+||||+++++.++|+++|++|++++|||++++    .+.|++|++||++|.++.+|.
T Consensus        10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A           10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4556788999999999999999999999999999999999863    578999999999999987763

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=99.61  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++..++|+||||+++++.++|+++|++|++++|||++++    .+.|++|++||++|.++.+|.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   67 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK   67 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            445678999999999999999999999999999999864    578999999999999987763

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.62  E-value=5.2e-16  Score=101.44  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=54.4

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkg-gs~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...++|+||||+++++.++|+++|++|++++|||++ ++.+.|++|++||++|.++.+|.
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE   65 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence            446899999999999999999999999999999997 68899999999999999987763

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.2e-16  Score=101.01  Aligned_cols=60  Identities=23%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++..++|+||||+++++.++|+++|++|++++|||++++   .+.|.+|++||++|.++.+|.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~   66 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK   66 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence            345678999999999999999999999999999999986   468999999999999987653

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.61  E-value=1.6e-16  Score=108.20  Aligned_cols=59  Identities=22%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             HHHHHHHhCCCCCCCh--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033628           54 RREAALILGVRESTPT--EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~--~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      ..++|+||||+++++.  ++|+++||+|++++|||++++.+.|++|++||++|.++.+|+.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~   67 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHH
Confidence            4578999999999988  9999999999999999999999999999999999999999876

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.61  E-value=7.5e-16  Score=96.49  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||+++++.++|+++|++|++++|||++++ .+.|++|++||++|.++.+|.
T Consensus         8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence            478999999999999999999999999999999864 789999999999999988763

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.8e-16  Score=98.82  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~-----~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...++|+||||+++++.++|+++|++|++++|||++++.     +.|++|++||++|.++.+|.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            345789999999999999999999999999999998752     57999999999999988763

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.2e-16  Score=99.22  Aligned_cols=60  Identities=25%  Similarity=0.291  Sum_probs=53.9

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++..++|+||||+++++.++|+++|++|++++|||++++   .+.|++|++||++|.++.+|.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   66 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK   66 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            455688999999999999999999999999999999864   578999999999999987763

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=1.1e-15  Score=102.74  Aligned_cols=63  Identities=21%  Similarity=0.328  Sum_probs=55.9

Q ss_pred             CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           49 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        49 ~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...++..++|+||||+++++.++|+++|++|++++|||++++    .+.|++|++||++|.++.+|.
T Consensus        11 ~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   77 (109)
T 2ctw_A           11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN   77 (109)
T ss_dssp             CTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            344566789999999999999999999999999999999874    478999999999999988764

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=99.45  Aligned_cols=58  Identities=26%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..++|+||||+++++.++|+++|++|++++|||++++     .+.|++|++||++|.++.+|.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS   70 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3578999999999999999999999999999999864     368999999999999987753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=2.1e-15  Score=97.67  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg---s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..++|+||||+++++.++|+++|++|++++|||+++   ..+.|++|++||++|.++.+|.
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence            457899999999999999999999999999999986   3578999999999999987763

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.2e-15  Score=101.75  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           52 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        52 m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +...++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|.++.+|.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            445789999999999999999999999999999999874    689999999999999988764

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.56  E-value=4.4e-16  Score=101.56  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhcccccCC
Q 033628           50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----------SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg----------s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..|+..++|+||||+++++.++|+++|++|++++|||++.          ..+.|.+|++||++|.++.+|.
T Consensus        11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4566789999999999999999999999999999999964          2378999999999999988764

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.56  E-value=1.9e-15  Score=95.47  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++|+||||++++|.++|+++|++|++++|||++++   .+.|++|++||++|.++.+|.
T Consensus         4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   62 (77)
T 1hdj_A            4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            46999999999999999999999999999999863   588999999999999987763

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=5.3e-15  Score=104.56  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHhcccccCC
Q 033628           50 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH----------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~----------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+..++|+||||+++++.++|+++||+|++++|||++++.          +.+.+|++||++|.++.+|+
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~   76 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR   76 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345667999999999999999999999999999999997532          78999999999999998875

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=7.5e-15  Score=97.40  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=51.0

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++|+||||+++++.++|+++|++|++++|||++++     .+.|++|++||++|.++.+|.
T Consensus         3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~   63 (99)
T 2lgw_A            3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE   63 (99)
T ss_dssp             CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999999999999999999999874     368999999999999987763

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.51  E-value=7.1e-15  Score=98.51  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=52.9

Q ss_pred             HHHHHHHhCCCCCC-ChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 033628           54 RREAALILGVREST-PTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        54 ~~eA~~iLgl~~~~-~~~~Ik~~yr~L~~~~HPDkggs-------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ..++|+||||++++ +.++|+++||+|++++|||++++       .+.|++|++||++|.++.+|.
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            35789999999999 99999999999999999999876       478999999999999988763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.51  E-value=1.8e-15  Score=109.84  Aligned_cols=59  Identities=22%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             HHHHHHHhCCCCCCC--hHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033628           54 RREAALILGVRESTP--TEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        54 ~~eA~~iLgl~~~~~--~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      ..++|+||||+++++  .++|+++||+|++++|||++++.+.+++|++||++|.++.+|+.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~   70 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   70 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999987  69999999999999999999999999999999999999988753

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.47  E-value=3e-15  Score=99.55  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=50.8

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++|+||||+++++.++|+++||+|++++|||++++    .+.+++|++||++|.++.+|.
T Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   63 (103)
T 1bq0_A            4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (103)
T ss_dssp             CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred             CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            56899999999999999999999999999999864    478999999999999987753

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.40  E-value=2.2e-14  Score=112.70  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           49 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        49 ~~~m~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...|+..++|+||||+++++.++|+++||+|++++|||++++   .+.|++|++||++|.++.+|.
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~   87 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA   87 (329)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhc
Confidence            456788999999999999999999999999999999999754   578999999999999998875

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.40  E-value=1.5e-13  Score=99.43  Aligned_cols=56  Identities=21%  Similarity=0.352  Sum_probs=50.9

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++|+||||+++++.++|+++||+|++++|||+++ +   .+.|++|++||++|.++.+|.
T Consensus         3 ~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5799999999999999999999999999999985 2   478999999999999988763

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.38  E-value=5.7e-14  Score=92.45  Aligned_cols=51  Identities=18%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLR  106 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-------~~~~~ki~~Ay~~L~~  106 (115)
                      ..|++|||++.++.++||++||++++++|||++.+       ...|+.|++||++|.+
T Consensus        34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            34899999999999999999999999999999643       3579999999999975

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.37  E-value=2.5e-13  Score=97.96  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             HHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVREST--PTEKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs--~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||++++  |.++|+++||+|++++|||++++  .       ..|..||+||++|.++.+|+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            579999999997  99999999999999999999653  2       47899999999999998774

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.34  E-value=6.2e-13  Score=98.57  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcccccCC
Q 033628           50 PVMTRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        50 ~~m~~~eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkggs--~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++....+.|+||||+++  +|.++|+++||+|.+++|||++++  .       +.+++||+||++|.++.+|+
T Consensus        38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            33334578999999986  799999999999999999999652  1       45789999999999998874

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.30  E-value=3.4e-13  Score=98.41  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=51.5

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ++.|+||||++.++.++|+++||+|++++|||++.+       .+.|.+|++||++|.++.+|.
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~  180 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP  180 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence            467999999999999999999999999999999642       358999999999999998886

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.26  E-value=4.2e-13  Score=90.12  Aligned_cols=53  Identities=17%  Similarity=0.092  Sum_probs=46.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhcccc
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDIMLRRT  108 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg----s-------~~~~~ki~~Ay~~L~~~~  108 (115)
                      .++|+|||++. +|.++||++||+|++++||||+.    +       .+.|++|++||++|.++.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            46789999986 99999999999999999999942    3       468999999999999864

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.13  E-value=7.2e-12  Score=91.11  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             HHHHHHh------CCCC-CCChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALIL------GVRE-STPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iL------gl~~-~~~~~~Ik~~yr~L~~~~HPDkgg-s~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...|+||      |+.+ ++|.++|+++||+|++++|||+++ +.+.|.+|++||++|.++.+|+
T Consensus        11 ~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~   75 (181)
T 3uo3_A           11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS   75 (181)
T ss_dssp             CCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred             CCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence            4679999      4655 799999999999999999999987 6788999999999999998764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.04  E-value=2e-11  Score=102.80  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkgg-s---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      ...+.|+||||++++|.++|+++||+|++++|||+++ +   .+.+++|++||++|.++.+|.
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~   81 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   81 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence            4568899999999999999999999999999999985 2   468899999999999988764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.27  E-value=7.1e-07  Score=67.82  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=49.2

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcccccCCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs~~-------~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      +.+++||+....+.+++++.|+++.+.+|||+..++.       .++.|++||++|.++.+|..
T Consensus       383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~  446 (450)
T 2y4t_A          383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK  446 (450)
T ss_dssp             CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred             hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence            3467889999999999999999999999999987653       78999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.75
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.69
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.57
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.51
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.48
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.37
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.34

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.75  E-value=3.3e-19  Score=113.12  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 033628           54 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  112 (115)
Q Consensus        54 ~~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~~  112 (115)
                      ..++|+||||++++  |.++|+++|+++++++|||+||+++.|++||+||++|.++.+|.+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~   70 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHH
Confidence            46889999999986  999999999999999999999999999999999999999887654

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.69  E-value=2.5e-18  Score=115.13  Aligned_cols=57  Identities=23%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             HHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~--~~~~Ik~~yr~L~~~~HPDkggs~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .+.|+||||+.++  +.++||++||+|++++|||+||+.+.|++|++||++|.++.+|+
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~   66 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHH
Confidence            4779999999997  78899999999999999999999999999999999999988865

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4.6e-16  Score=97.08  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=50.1

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||++++|.++|+++|++|++.+|||++++    ...|.+|++||++|.++.+|.
T Consensus         4 dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   63 (75)
T d1xbla_           4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (75)
T ss_dssp             CTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred             CHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            56899999999999999999999999999999753    367999999999999987763

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=93.29  Aligned_cols=57  Identities=14%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccccc
Q 033628           53 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTK  109 (115)
Q Consensus        53 ~~~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-----~~~~~ki~~Ay~~L~~~~k  109 (115)
                      ..+|+|+|||+++++|.++|+++|++|++++|||++++     .+.|++|++||++|.+...
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999753     2568999999999986543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.8e-15  Score=95.67  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=50.3

Q ss_pred             HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhcccccCC
Q 033628           55 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        55 ~eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs----------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .++|+||||+++++.++|+++|++|++.+|||++..          .+.|..|++||++|.++.+|.
T Consensus        16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_          16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            478999999999999999999999999999998632          256889999999999987764

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.5e-14  Score=89.30  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=50.7

Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs---~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|+||||++++|.++|+++|+++.+++|||++.+   .+.+..|++||++|.++.+|.
T Consensus         4 dyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHH
Confidence            46999999999999999999999999999999764   377899999999999988763

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.5e-13  Score=85.32  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCC--CCH-------HHHHHHHHHHHHhcccccCC
Q 033628           56 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAG--GSH-------YLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        56 eA~~iLgl~~~--~~~~~Ik~~yr~L~~~~HPDkg--gs~-------~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      +.|++|||+.+  +|.++|+++|+++++.+|||+.  .++       ..++.|++||++|.++.+|+
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~   68 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57999999986  5689999999999999999984  222       45678999999999998874

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=6e-14  Score=91.55  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 033628           57 AALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  111 (115)
Q Consensus        57 A~~iLgl~~~~~~~~Ik~~yr~L~~~~HPDkggs-------~~~~~ki~~Ay~~L~~~~kr~  111 (115)
                      .|++||+++.+|.++|+++|+++++.+|||++++       ...|+.|++||++|.++.+|+
T Consensus        35 ~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~   96 (98)
T d1nz6a_          35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP   96 (98)
T ss_dssp             SCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHh
Confidence            4889999999999999999999999999998553       257899999999999999886