Citrus Sinensis ID: 033710

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
cccccccHHHHHHHHHHHcccccccEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHcc
cccccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEccHHHcccccccccHHHHHHHHHcc
MANSNLPRRIIKETQRllsepapgisaspsednmRYFNVMilgptqspyeggvfklelflpeeypmaapkVRFLTkiyhpnidkLGRICLDIlkdkwspalQIRTVLLRYCEL
MANSNLPRRIIKEtqrllsepapgisaspsedNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKdkwspalqirTVLLRYCEL
MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
**********************************RYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYC**
*****LP***IKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
******PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query113 2.2.26 [Sep-21-2011]
Q94A97153 Ubiquitin-conjugating enz no no 0.955 0.705 1.0 1e-58
Q9FZ48153 Ubiquitin-conjugating enz no no 0.955 0.705 0.990 4e-58
Q5R7J6152 Ubiquitin-conjugating enz yes no 0.929 0.690 0.828 9e-48
P61089152 Ubiquitin-conjugating enz no no 0.929 0.690 0.828 9e-48
P61088152 Ubiquitin-conjugating enz yes no 0.929 0.690 0.828 9e-48
Q0P5K3152 Ubiquitin-conjugating enz yes no 0.929 0.690 0.828 9e-48
Q9EQX9152 Ubiquitin-conjugating enz yes no 0.929 0.690 0.828 1e-47
Q4R4I1152 Ubiquitin-conjugating enz N/A no 0.929 0.690 0.819 5e-47
P35128151 Ubiquitin-conjugating enz yes no 0.929 0.695 0.790 9e-47
Q86K32154 Probable ubiquitin-conjug yes no 0.929 0.681 0.809 2e-46
>sp|Q94A97|UBC35_ARATH Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1 Back     alignment and function desciption
 Score =  224 bits (570), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
           MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL
Sbjct: 1   MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60

Query: 61  PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
           PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL
Sbjct: 61  PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
Catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Required for postreplication repair of UV-damaged DNA and for adaptating root developmental programs to suboptimal availability of iron.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9
>sp|Q9FZ48|UBC36_ARATH Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7J6|UBE2N_PONAB Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1 Back     alignment and function description
>sp|P61089|UBE2N_MOUSE Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1 Back     alignment and function description
>sp|P61088|UBE2N_HUMAN Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1 Back     alignment and function description
>sp|Q0P5K3|UBE2N_BOVIN Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1 Back     alignment and function description
>sp|Q9EQX9|UBE2N_RAT Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1 Back     alignment and function description
>sp|Q4R4I1|UBE2N_MACFA Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1 Back     alignment and function description
>sp|P35128|UBE2N_DROME Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1 Back     alignment and function description
>sp|Q86K32|UBE2N_DICDI Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query113
79321461112 ubiquitin-conjugating enzyme E2 35 [Arab 0.973 0.982 1.0 8e-58
3834310163 Similar to Ubiquitin-conjugating enzyme 0.991 0.687 0.973 2e-57
359807381153 uncharacterized protein LOC100805631 [Gl 0.955 0.705 1.0 5e-57
225461646153 PREDICTED: ubiquitin-conjugating enzyme 0.955 0.705 1.0 5e-57
224121530153 predicted protein [Populus trichocarpa] 0.955 0.705 1.0 5e-57
18412149153 ubiquitin-conjugating enzyme E2 35 [Arab 0.955 0.705 1.0 6e-57
116787013153 unknown [Picea sitchensis] gi|116791120| 0.955 0.705 0.990 1e-56
351725729153 uncharacterized protein LOC100500231 [Gl 0.955 0.705 0.990 2e-56
18394416153 ubiquitin-conjugating enzyme E2 36 [Arab 0.955 0.705 0.990 2e-56
414881043134 TPA: putative ubiquitin-conjugating enzy 0.964 0.813 0.981 2e-56
>gi|79321461|ref|NP_001031298.1| ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] gi|332198045|gb|AEE36166.1| ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  227 bits (578), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
           MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL
Sbjct: 1   MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60

Query: 61  PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRY 110
           PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRY
Sbjct: 61  PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRY 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|3834310|gb|AAC83026.1| Similar to Ubiquitin-conjugating enzyme E2-17 KD gb|D83004 from Homo sapiens. ESTs gb|T88233, gb|Z24464, gb|N37265, gb|H36151, gb|Z34711, gb|AA040983, and gb|T22122 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359807381|ref|NP_001241639.1| uncharacterized protein LOC100805631 [Glycine max] gi|297839753|ref|XP_002887758.1| ubiquitin-conjugating enzyme 1 [Arabidopsis lyrata subsp. lyrata] gi|71040675|gb|AAZ20286.1| ubiquitin-conjugating enzyme 1 [Arachis hypogaea] gi|217075352|gb|ACJ86036.1| unknown [Medicago truncatula] gi|255628881|gb|ACU14785.1| unknown [Glycine max] gi|255641415|gb|ACU20984.1| unknown [Glycine max] gi|297333599|gb|EFH64017.1| ubiquitin-conjugating enzyme 1 [Arabidopsis lyrata subsp. lyrata] gi|378464294|gb|AFC01194.1| ubiquitin-conjugating enzyme [Ammopiptanthus mongolicus] gi|388491284|gb|AFK33708.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225461646|ref|XP_002285421.1| PREDICTED: ubiquitin-conjugating enzyme E2 35 isoform 1 [Vitis vinifera] gi|255564766|ref|XP_002523377.1| Ubiquitin-conjugating enzyme E2 N, putative [Ricinus communis] gi|449438927|ref|XP_004137239.1| PREDICTED: ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus] gi|449483162|ref|XP_004156510.1| PREDICTED: ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus] gi|223537327|gb|EEF38956.1| Ubiquitin-conjugating enzyme E2 N, putative [Ricinus communis] gi|258456188|gb|ACV72277.1| ubiquitin-conjugating enzyme 13 [Citrus sinensis] gi|298352995|gb|ADI76991.1| putative ubiquitin-conjugating enzyme [Cucumis sativus] gi|298352997|gb|ADI76992.1| putative ubiquitin-conjugating enzyme [Cucumis sativus] gi|302142905|emb|CBI20200.3| unnamed protein product [Vitis vinifera] gi|317159577|gb|ADV04063.1| protein binding/ubiquitin-protein ligase 2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224121530|ref|XP_002330723.1| predicted protein [Populus trichocarpa] gi|118482721|gb|ABK93279.1| unknown [Populus trichocarpa] gi|118483536|gb|ABK93666.1| unknown [Populus trichocarpa] gi|118484632|gb|ABK94188.1| unknown [Populus trichocarpa] gi|118484964|gb|ABK94347.1| unknown [Populus trichocarpa] gi|222872499|gb|EEF09630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18412149|ref|NP_565192.1| ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] gi|75332036|sp|Q94A97.1|UBC35_ARATH RecName: Full=Ubiquitin-conjugating enzyme E2 35; AltName: Full=Ubiquitin carrier protein 35 gi|15146240|gb|AAK83603.1| At1g78870/F9K20_8 [Arabidopsis thaliana] gi|21553986|gb|AAM63067.1| E2, ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana] gi|23308287|gb|AAN18113.1| At1g78870/F9K20_8 [Arabidopsis thaliana] gi|66354478|gb|AAY44874.1| ubiquitinating enzyme [Arabidopsis thaliana] gi|332198044|gb|AEE36165.1| ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116787013|gb|ABK24341.1| unknown [Picea sitchensis] gi|116791120|gb|ABK25864.1| unknown [Picea sitchensis] gi|224287055|gb|ACN41228.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|351725729|ref|NP_001235055.1| uncharacterized protein LOC100500231 [Glycine max] gi|255629772|gb|ACU15235.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18394416|ref|NP_564011.1| ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|225446595|ref|XP_002280480.1| PREDICTED: ubiquitin-conjugating enzyme E2 36 isoform 1 [Vitis vinifera] gi|297850090|ref|XP_002892926.1| hypothetical protein ARALYDRAFT_889082 [Arabidopsis lyrata subsp. lyrata] gi|75334547|sp|Q9FZ48.1|UBC36_ARATH RecName: Full=Ubiquitin-conjugating enzyme E2 36; AltName: Full=Ubiquitin carrier protein 36 gi|9802775|gb|AAF99844.1|AC051629_11 Putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana] gi|15450413|gb|AAK96500.1| At1g16890/F17F16.16 [Arabidopsis thaliana] gi|16974499|gb|AAL31253.1| At1g16890/F17F16.16 [Arabidopsis thaliana] gi|21555312|gb|AAM63831.1| E2, ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana] gi|66354480|gb|AAY44875.1| ubiquitinating enzyme [Arabidopsis thaliana] gi|297338768|gb|EFH69185.1| hypothetical protein ARALYDRAFT_889082 [Arabidopsis lyrata subsp. lyrata] gi|302143419|emb|CBI21980.3| unnamed protein product [Vitis vinifera] gi|332191395|gb|AEE29516.1| ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|414881043|tpg|DAA58174.1| TPA: putative ubiquitin-conjugating enzyme family [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query113
UNIPROTKB|J9P4S8152 LOC611801 "Uncharacterized pro 0.929 0.690 0.838 4.4e-45
WB|WBGene00006708151 ubc-13 [Caenorhabditis elegans 0.911 0.682 0.864 4.4e-45
UNIPROTKB|Q0P5K3152 UBE2N "Ubiquitin-conjugating e 0.929 0.690 0.828 1.2e-44
UNIPROTKB|J9P3Q3152 UBE2NL "Uncharacterized protei 0.929 0.690 0.828 1.2e-44
UNIPROTKB|P61088152 UBE2N "Ubiquitin-conjugating e 0.929 0.690 0.828 1.2e-44
UNIPROTKB|F1SQ14152 LOC100519842 "Uncharacterized 0.929 0.690 0.828 1.2e-44
UNIPROTKB|Q5R7J6152 UBE2N "Ubiquitin-conjugating e 0.929 0.690 0.828 1.2e-44
MGI|MGI:1934835152 Ube2n "ubiquitin-conjugating e 0.929 0.690 0.828 1.2e-44
RGD|621096152 Ube2n "ubiquitin-conjugating e 0.929 0.690 0.828 1.2e-44
ZFIN|ZDB-GENE-040426-1291154 ube2nb "ubiquitin-conjugating 0.929 0.681 0.828 1.5e-44
UNIPROTKB|J9P4S8 LOC611801 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 88/105 (83%), Positives = 95/105 (90%)

Query:     4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEE 63
             + LPRRIIKETQRLL+EPAPGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEE
Sbjct:     2 ARLPRRIIKETQRLLAEPAPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61

Query:    64 YPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
             YPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL
Sbjct:    62 YPMAAPKVRFITKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 106
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
WB|WBGene00006708 ubc-13 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5K3 UBE2N "Ubiquitin-conjugating enzyme E2 N" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3Q3 UBE2NL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P61088 UBE2N "Ubiquitin-conjugating enzyme E2 N" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQ14 LOC100519842 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R7J6 UBE2N "Ubiquitin-conjugating enzyme E2 N" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1934835 Ube2n "ubiquitin-conjugating enzyme E2N" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621096 Ube2n "ubiquitin-conjugating enzyme E2N" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1291 ube2nb "ubiquitin-conjugating enzyme E2Nb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35128UBE2N_DROME6, ., 3, ., 2, ., 1, 90.79040.92920.6953yesno
P52490UBC13_YEAST6, ., 3, ., 2, ., 1, 90.73330.92920.6862yesno
P61088UBE2N_HUMAN6, ., 3, ., 2, ., 1, 90.82850.92920.6907yesno
Q9EQX9UBE2N_RAT6, ., 3, ., 2, ., 1, 90.82850.92920.6907yesno
Q5R7J6UBE2N_PONAB6, ., 3, ., 2, ., 1, 90.82850.92920.6907yesno
Q86K32UBE2N_DICDI6, ., 3, ., 2, ., 1, 90.80950.92920.6818yesno
Q4R4I1UBE2N_MACFA6, ., 3, ., 2, ., 1, 90.81900.92920.6907N/Ano
Q0P5K3UBE2N_BOVIN6, ., 3, ., 2, ., 1, 90.82850.92920.6907yesno
O13685UBC13_SCHPO6, ., 3, ., 2, ., 1, 90.70870.91150.6959yesno
Q9FZ48UBC36_ARATH6, ., 3, ., 2, ., 1, 90.99070.95570.7058nono
Q94A97UBC35_ARATH6, ., 3, ., 2, ., 1, 91.00.95570.7058nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.190.979
3rd Layer6.3.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027804001
RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (153 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query113
PTZ00390152 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; 1e-61
COG5078153 COG5078, COG5078, Ubiquitin-protein ligase [Posttr 3e-50
pfam00179139 pfam00179, UQ_con, Ubiquitin-conjugating enzyme 1e-49
cd00195141 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca 1e-45
smart00212145 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, 5e-42
PLN00172147 PLN00172, PLN00172, ubiquitin conjugating enzyme; 1e-31
>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information 
 Score =  184 bits (469), Expect = 1e-61
 Identities = 74/103 (71%), Positives = 85/103 (82%)

Query: 6   LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP 65
           + +RI KETQ L ++P PGI A P   N R+F +++ GP  +PYEGG +KLELFLPE+YP
Sbjct: 3   ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYP 62

Query: 66  MAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
           M  PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL
Sbjct: 63  MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 105

Length = 152
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme Back     alignment and domain information
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 113
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 100.0
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 100.0
PLN00172147 ubiquitin conjugating enzyme; Provisional 100.0
KOG0425171 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 100.0
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 100.0
KOG0426165 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0424158 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 100.0
KOG0427161 consensus Ubiquitin conjugating enzyme [Posttransl 100.0
KOG0422153 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0894 244 consensus Ubiquitin-protein ligase [Posttranslatio 100.0
KOG0423 223 consensus Ubiquitin-protein ligase [Posttranslatio 99.97
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 99.96
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 99.95
KOG0428 314 consensus Non-canonical ubiquitin conjugating enzy 99.93
KOG0895 1101 consensus Ubiquitin-conjugating enzyme [Posttransl 99.81
KOG0895 1101 consensus Ubiquitin-conjugating enzyme [Posttransl 99.77
KOG0429 258 consensus Ubiquitin-conjugating enzyme-related pro 99.77
KOG0896138 consensus Ubiquitin-conjugating enzyme E2 [Posttra 99.64
KOG0897122 consensus Predicted ubiquitin-conjugating enzyme [ 98.83
PF14461133 Prok-E2_B: Prokaryotic E2 family B 98.78
PF08694161 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 98.76
PF05743121 UEV: UEV domain; InterPro: IPR008883 The N-termina 98.41
KOG3357167 consensus Uncharacterized conserved protein [Funct 98.1
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 96.98
KOG2391 365 consensus Vacuolar sorting protein/ubiquitin recep 96.9
smart00591107 RWD domain in RING finger and WD repeat containing 96.6
PF14457162 Prok-E2_A: Prokaryotic E2 family A 96.27
PF14462122 Prok-E2_E: Prokaryotic E2 family E 95.6
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 91.44
KOG4018 215 consensus Uncharacterized conserved protein, conta 86.46
PF09765 291 WD-3: WD-repeat region; InterPro: IPR019162 This e 85.05
PF06113 333 BRE: Brain and reproductive organ-expressed protei 82.79
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-48  Score=256.37  Aligned_cols=113  Identities=50%  Similarity=0.994  Sum_probs=109.4

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCCeEEEeCCC-CCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccCcc
Q 033710            1 MANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH   79 (113)
Q Consensus         1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~~~~-~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i~H   79 (113)
                      |++..+.+||++|++++++++++++++.|.++ |+++|+++|.||++||||||.|+++|.||++||++||+|+|+++|||
T Consensus         1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H   80 (153)
T COG5078           1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH   80 (153)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence            67777999999999999999999999999877 99999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710           80 PNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL  113 (113)
Q Consensus        80 Pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l  113 (113)
                      |||+.+|.||+++|.++|+|++++++||++||+|
T Consensus        81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~sl  114 (153)
T COG5078          81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSL  114 (153)
T ss_pred             CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHH
Confidence            9999999999999999999999999999999975

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14461 Prok-E2_B: Prokaryotic E2 family B Back     alignment and domain information
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes Back     alignment and domain information
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub) Back     alignment and domain information
>KOG3357 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information
>PF14457 Prok-E2_A: Prokaryotic E2 family A Back     alignment and domain information
>PF14462 Prok-E2_E: Prokaryotic E2 family E Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL Back     alignment and domain information
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query113
2c2v_B154 Crystal Structure Of The Chip-Ubc13-Uev1a Complex L 5e-49
3hct_B155 Crystal Structure Of Traf6 In Complex With Ubc13 In 7e-49
1j7d_B152 Crystal Structure Of Hmms2-Hubc13 Length = 152 7e-49
4epo_B155 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 8e-49
3von_C148 Crystalstructure Of The Ubiquitin Protease Length = 1e-48
1jat_A155 Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng 2e-44
1jbb_A153 Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 2e-44
2gmi_A152 Mms2UBC13~UBIQUITIN Length = 152 2e-43
2r0j_A149 Crystal Structure Of The Putative Ubiquitin Conjuga 6e-43
3e95_A151 Crystal Structure Of The Plasmodium Falciparum Ubiq 6e-43
4fh1_A153 S. Cerevisiae Ubc13-N79a Length = 153 1e-42
1qcq_A148 Ubiquitin Conjugating Enzyme Length = 148 1e-27
2oxq_A152 Structure Of The Ubch5 :chip U-Box Complex Length = 2e-27
2ayv_A166 Crystal Structure Of A Putative Ubiquitin-Conjugati 2e-27
3l1y_A157 Crystal Structure Of Human Ubc4 E2 Conjugating Enzy 4e-27
3l1z_A157 Crystal Structure Of The U-Box Domain Of Human E4b 4e-27
3tgd_A152 Crystal Structure Of The Human Ubiquitin-Conjugatin 6e-27
1ur6_A147 Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp 6e-27
2esk_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil 6e-27
3eb6_B149 Structure Of The Ciap2 Ring Domain Bound To Ubch5b 6e-27
2c4o_B165 Crystal Structure Of Human Ubiquitin-Conjugating En 7e-27
2fuh_A146 Solution Structure Of The Ubch5cUB NON-Covalent Com 7e-27
3rpg_A149 Bmi1RING1B-Ubch5c Complex Structure Length = 149 7e-27
1x23_A155 Crystal Structure Of Ubch5c Length = 155 8e-27
1z2u_A150 The 1.1a Crystallographic Structure Of Ubiquitin- C 9e-27
4gpr_A151 Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin 1e-26
2esq_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 2e-26
2esp_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 2e-26
2eso_A149 Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta 2e-26
3jvz_A146 E2~ubiquitin-Hect Length = 146 5e-26
3a33_A150 Ubch5b~ubiquitin Conjugate Length = 150 7e-26
4ii2_C163 Crystal Structure Of Ubiquitin Activating Enzyme 1 9e-26
3ugb_A147 Ubch5c~ubiquitin Conjugate Length = 147 1e-25
4ddg_A 399 Crystal Structure Of Human Otub1UBCH5B~UBUB Length 1e-25
2c4o_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 1e-25
2yho_B149 The Idol-Ube2d Complex Mediates Sterol-Dependent De 2e-25
3oj4_A153 Crystal Structure Of The A20 Znf4, Ubiquitin And Ub 2e-25
3bzh_A194 Crystal Structure Of Human Ubiquitin-Conjugating En 2e-25
2c4p_A165 Crystal Structure Of Human Ubiquitin-Conjugating En 2e-25
1y6l_A149 Human Ubiquitin Conjugating Enzyme E2e2 Length = 14 4e-25
1yh2_A169 Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 7e-25
1jas_A152 Hsubc2b Length = 152 1e-24
1ayz_A169 Crystal Structure Of The Saccharomyces Cerevisiae U 2e-24
4auq_A147 Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 3e-24
1q34_A163 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 5e-24
1z3d_A157 Protein Crystal Growth Improvement Leading To The 2 5e-24
2aak_A152 Ubiquitin Conjugating Enzyme From Arabidopsis Thali 9e-24
4ap4_B153 Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le 3e-23
1zdn_A158 Ubiquitin-Conjugating Enzyme E2s Length = 158 4e-21
2pwq_A216 Crystal Structure Of A Putative Ubiquitin Conjugati 4e-21
2f4z_A193 Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw 7e-21
1fxt_A149 Structure Of A Conjugating Enzyme-Ubiquitin Thioles 1e-20
1tte_A 215 The Structure Of A Class Ii Ubiquitin-Conjugating E 1e-20
1yla_A202 Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington 6e-20
3k9p_A217 The Crystal Structure Of E2-25k And Ubiquitin Compl 6e-20
3e46_A253 Crystal Structure Of Ubiquitin-Conjugating Enzyme E 7e-20
2bep_A159 Crystal Structure Of Ubiquitin Conjugating Enzyme E 7e-20
3k9o_A201 The Crystal Structure Of E2-25k And Ubb+1 Complex L 7e-20
2e2c_A156 E2-C, An Ubiquitin Conjugating Enzyme Required For 1e-19
1i7k_A179 Crystal Structure Of Human Mitotic-Specific Ubiquit 2e-18
2ucz_A165 Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy 2e-17
2awf_A172 Structure Of Human Ubiquitin-Conjugating Enzyme E2 6e-17
1pzv_A164 Crystal Structures Of Two Ubc (E2) Enzymes Of The U 2e-16
2onu_A152 Plasmodium Falciparum Ubiquitin Conjugating Enzyme 2e-15
3rz3_A183 Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len 2e-15
2ob4_A180 Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1 4e-15
3fsh_A168 Crystal Structure Of The Ubiquitin Conjugating Enzy 6e-15
2kly_A167 Solution Structure Of Human Ubiquitin Conjugating E 6e-15
2cyx_A170 Structure Of Human Ubiquitin-Conjugating Enzyme E2 6e-15
3h8k_A164 Crystal Structure Of Ube2g2 Complxed With The G2br 9e-15
1wzv_A155 Crystal Structure Of Ubch8 Length = 155 2e-14
2kjh_A152 Nmr Based Structural Model Of The Ubch8-Ubiquitin C 2e-14
2z5d_A179 Human Ubiquitin-Conjugating Enzyme E2 H Length = 17 4e-14
3sqv_C156 Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L 2e-13
1c4z_D154 Structure Of E6ap: Insights Into Ubiquitination Pat 2e-13
1yf9_A171 Structural Analysis Of Leishmania Major Ubiquitin C 3e-13
2grp_A161 Crystal Structure Of Human Rangap1-Ubc9-Y87a Length 4e-13
2grq_A161 Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt 6e-13
2grr_A161 Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt 6e-13
1kps_A159 Structural Basis For E2-Mediated Sumo Conjugation R 6e-13
2o25_C160 Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi 6e-13
1z5s_A158 Crystal Structure Of A Complex Between Ubc9, Sumo-1 7e-13
2grn_A161 Crystal Structure Of Human Rangap1-Ubc9 Length = 16 7e-13
1u9a_A160 Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16 7e-13
3rcz_B163 Rad60 Sld2 Ubc9 Complex Length = 163 7e-13
3a4s_A163 The Crystal Structure Of The Sld2:ubc9 Complex Leng 7e-13
2gro_A161 Crystal Structure Of Human Rangap1-Ubc9-N85q Length 3e-12
3o2u_A190 S. Cerevisiae Ubc12 Length = 190 6e-12
2uyz_A158 Non-Covalent Complex Between Ubc9 And Sumo1 Length 9e-12
1y8x_A160 Structural Basis For Recruitment Of Ubc12 By An E2- 1e-11
3uio_A158 Complex Between Human Rangap1-Sumo2, Ubc9 And The I 1e-11
3fn1_B167 E2-Ring Expansion Of The Nedd8 Cascade Confers Spec 3e-11
2edi_A173 Solution Structure Of The Uq_con Domain From Human 3e-11
2fo3_A125 Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le 2e-10
1yrv_A169 Novel Ubiquitin-Conjugating Enzyme Length = 169 2e-10
2nvu_C180 Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1 3e-10
3ong_B159 Crystal Structure Of Uba2ufd-ubc9: Insights Into E1 4e-10
2f4w_A187 Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1 4e-10
2gjd_A157 Distinct Functional Domains Of Ubc9 Dictate Cell Su 5e-10
2a7l_A136 Structure Of The Human Hypothetical Ubiquitin-Conju 5e-10
2h2y_A136 Crystal Structure Of Ubiquitin Conjugating Enzyme E 2e-09
2y9o_A172 Pex4p-Pex22p Mutant I Structure Length = 172 2e-09
2y9p_A172 Pex4p-Pex22p Mutant Ii Structure Length = 172 3e-09
2y9m_A172 Pex4p-Pex22p Structure Length = 172 3e-09
3ceg_A 323 Crystal Structure Of The Ubc Domain Of Baculoviral 3e-08
4ds2_A167 Ubiquitin Conjugating Enzyme (Putative) From Trypan 3e-07
2q0v_A156 Crystal Structure Of Ubiquitin Conjugating Enzyme E 8e-06
3e95_C158 Crystal Structure Of The Plasmodium Falciparum Ubiq 9e-06
1jat_B138 Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng 6e-05
2gmi_B137 Mms2UBC13~UBIQUITIN Length = 137 7e-05
2c2v_C142 Crystal Structure Of The Chip-Ubc13-Uev1a Complex L 1e-04
1j74_A145 Crystal Structure Of Mms2 Length = 145 2e-04
1zgu_A139 Solution Structure Of The Human Mms2-Ubiquitin Comp 2e-04
4epo_A149 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 2e-04
3von_B138 Crystalstructure Of The Ubiquitin Protease Length = 2e-04
2a4d_A160 Structure Of The Human Ubiquitin-Conjugating Enzyme 3e-04
2hlw_A170 Solution Structure Of The Human Ubiquitin-Conjugati 3e-04
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (478), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 95/107 (88%)
Query: 2   ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
            ++ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLP
Sbjct: 2   GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 62  EEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
           EEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL
Sbjct: 62  EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLL 108
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155 Back     alignment and structure
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152 Back     alignment and structure
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155 Back     alignment and structure
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148 Back     alignment and structure
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155 Back     alignment and structure
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 Back     alignment and structure
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152 Back     alignment and structure
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149 Back     alignment and structure
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151 Back     alignment and structure
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153 Back     alignment and structure
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148 Back     alignment and structure
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152 Back     alignment and structure
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166 Back     alignment and structure
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157 Back     alignment and structure
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152 Back     alignment and structure
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147 Back     alignment and structure
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149 Back     alignment and structure
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149 Back     alignment and structure
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146 Back     alignment and structure
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149 Back     alignment and structure
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155 Back     alignment and structure
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150 Back     alignment and structure
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151 Back     alignment and structure
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149 Back     alignment and structure
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149 Back     alignment and structure
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149 Back     alignment and structure
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146 Back     alignment and structure
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150 Back     alignment and structure
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163 Back     alignment and structure
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147 Back     alignment and structure
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399 Back     alignment and structure
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 Back     alignment and structure
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149 Back     alignment and structure
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153 Back     alignment and structure
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194 Back     alignment and structure
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165 Back     alignment and structure
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149 Back     alignment and structure
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 Back     alignment and structure
>pdb|1JAS|A Chain A, Hsubc2b Length = 152 Back     alignment and structure
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169 Back     alignment and structure
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 Back     alignment and structure
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163 Back     alignment and structure
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157 Back     alignment and structure
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152 Back     alignment and structure
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153 Back     alignment and structure
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158 Back     alignment and structure
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216 Back     alignment and structure
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193 Back     alignment and structure
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149 Back     alignment and structure
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215 Back     alignment and structure
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202 Back     alignment and structure
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217 Back     alignment and structure
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253 Back     alignment and structure
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159 Back     alignment and structure
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201 Back     alignment and structure
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156 Back     alignment and structure
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179 Back     alignment and structure
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165 Back     alignment and structure
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172 Back     alignment and structure
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164 Back     alignment and structure
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152 Back     alignment and structure
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183 Back     alignment and structure
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180 Back     alignment and structure
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168 Back     alignment and structure
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167 Back     alignment and structure
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170 Back     alignment and structure
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164 Back     alignment and structure
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155 Back     alignment and structure
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152 Back     alignment and structure
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179 Back     alignment and structure
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156 Back     alignment and structure
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154 Back     alignment and structure
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171 Back     alignment and structure
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161 Back     alignment and structure
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161 Back     alignment and structure
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161 Back     alignment and structure
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159 Back     alignment and structure
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158 Back     alignment and structure
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161 Back     alignment and structure
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160 Back     alignment and structure
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163 Back     alignment and structure
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163 Back     alignment and structure
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161 Back     alignment and structure
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190 Back     alignment and structure
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158 Back     alignment and structure
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160 Back     alignment and structure
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158 Back     alignment and structure
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167 Back     alignment and structure
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173 Back     alignment and structure
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125 Back     alignment and structure
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169 Back     alignment and structure
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180 Back     alignment and structure
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159 Back     alignment and structure
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187 Back     alignment and structure
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157 Back     alignment and structure
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136 Back     alignment and structure
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136 Back     alignment and structure
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172 Back     alignment and structure
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172 Back     alignment and structure
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172 Back     alignment and structure
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323 Back     alignment and structure
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167 Back     alignment and structure
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156 Back     alignment and structure
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158 Back     alignment and structure
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138 Back     alignment and structure
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137 Back     alignment and structure
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142 Back     alignment and structure
>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145 Back     alignment and structure
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139 Back     alignment and structure
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149 Back     alignment and structure
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138 Back     alignment and structure
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160 Back     alignment and structure
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query113
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 6e-68
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 2e-67
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 1e-66
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 6e-66
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 5e-65
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 6e-65
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 7e-65
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 8e-65
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 8e-64
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 2e-63
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 3e-63
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 4e-63
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 6e-63
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 3e-62
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 1e-60
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 5e-60
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 6e-60
1tte_A 215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 2e-59
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 3e-59
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 2e-58
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 2e-58
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 7e-58
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 1e-57
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 2e-57
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 2e-57
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 2e-55
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 9e-54
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 1e-53
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 2e-53
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 3e-53
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 5e-53
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 1e-52
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 2e-52
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 2e-52
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 2e-51
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 2e-51
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 3e-51
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 4e-51
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 7e-51
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 8e-51
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 6e-50
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 7e-50
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 1e-49
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 1e-48
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 3e-48
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 8e-48
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 1e-47
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 2e-47
3ceg_A 323 Baculoviral IAP repeat-containing protein 6; apopt 9e-35
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 6e-29
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 3e-05
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154 Back     alignment and structure
 Score =  200 bits (510), Expect = 6e-68
 Identities = 88/112 (78%), Positives = 96/112 (85%)

Query: 2   ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
            ++ LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLP
Sbjct: 2   GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61

Query: 62  EEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL 113
           EEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLL    L
Sbjct: 62  EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL 113
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155 Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156 Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179 Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166 Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158 Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150 Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165 Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159 Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216 Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399 Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125 Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201 Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136 Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215 Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149 Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152 Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253 Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193 Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136 Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179 Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167 Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154 Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155 Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183 Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160 Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180 Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157 Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171 Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161 Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167 Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163 Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164 Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160 Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172 Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165 Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156 Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323 Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186 Back     alignment and structure
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query113
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 100.0
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 100.0
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 100.0
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 100.0
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 100.0
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 100.0
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 100.0
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 100.0
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 100.0
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 100.0
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 100.0
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 100.0
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 100.0
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 100.0
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 100.0
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 100.0
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 100.0
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 100.0
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 100.0
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 100.0
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 100.0
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 100.0
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 100.0
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 100.0
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 100.0
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 100.0
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 100.0
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 100.0
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 100.0
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 100.0
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 100.0
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 100.0
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 100.0
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 100.0
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 100.0
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 100.0
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 100.0
1tte_A 215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 100.0
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 100.0
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 100.0
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 100.0
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 100.0
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 100.0
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 100.0
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 100.0
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 100.0
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 100.0
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 100.0
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 100.0
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 100.0
3ceg_A 323 Baculoviral IAP repeat-containing protein 6; apopt 100.0
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 99.97
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 99.84
3r3q_A162 Suppressor protein STP22 of temperature-sensitive 99.82
3obq_A146 Tumor susceptibility gene 101 protein; protein tra 99.6
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 97.16
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 96.93
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 96.92
3zqs_A 186 E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A 95.98
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 95.5
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 94.2
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 92.61
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 92.19
3u3c_B26 Paxillin LD2 peptide; 4-helix bundle, focal adhesi 91.09
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-45  Score=237.84  Aligned_cols=110  Identities=31%  Similarity=0.588  Sum_probs=103.6

Q ss_pred             CchHHHHHHHHHHHhcCCCCCeEEEeCCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccC-cccee
Q 033710            4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNI   82 (113)
Q Consensus         4 ~~~~~RL~~E~~~l~~~~~~gi~~~~~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i-~HPnv   82 (113)
                      +++.+||++|++++++++++|+++.++++|+++|+++|.||++|+||||.|+++|.||++||++||+|+|.|++ |||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv   84 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV   84 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999996 99999


Q ss_pred             eCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710           83 DKLGRICLDILKDKWSPALQIRTVLLRYCEL  113 (113)
Q Consensus        83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~l  113 (113)
                      +.+|.||+++|.++|+|++++++||++|++|
T Consensus        85 ~~~G~iCl~iL~~~W~P~~~i~~vl~si~~l  115 (125)
T 2fo3_A           85 YSNGDICLSLLGDDYNPSLSISGLVLSIISM  115 (125)
T ss_dssp             CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred             CCCCEEEchhcCCCCCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999875
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* Back     alignment and structure
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Back     alignment and structure
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Back     alignment and structure
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens} Back     alignment and structure
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 113
d2a7la1117 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 5e-34
d1z2ua1147 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U 2e-31
d2fo3a1109 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating 6e-31
d2awfa1125 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U 3e-30
d1y6la_148 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 4e-30
d1j7db_149 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H 9e-30
d1jata_152 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 4e-29
d1ayza_153 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 3e-28
d2e2ca_156 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C 3e-28
d2f4wa1157 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, 1e-26
d1pzva_161 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N 2e-26
d1i7ka_146 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H 2e-25
d1s1qa_141 d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 7e-25
d1z3da1149 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U 8e-25
d2a4da1139 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, 2e-24
d2ucza_164 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 1e-23
d1yh2a1154 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U 1e-23
d2uyza1156 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U 1e-23
d1wzva1150 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U 9e-23
d1y8xa1157 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, 3e-22
d1zdna1151 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U 5e-22
d1fzya_149 d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B 9e-22
d1jatb_136 d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B 1e-21
d1yrva1148 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U 1e-20
d1c4zd_144 d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H 2e-20
d2bepa1154 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2 2e-20
d2f4za1161 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca 3e-20
d1yf9a1158 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, 6e-20
d1uzxa_152 d.20.1.2 (A:) Vacuolar protein sorting-associated 3e-19
d2z5da1152 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, 4e-18
d1zuoa1162 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme 2e-12
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 5e-34
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 4   SNLPRRIIKETQRLLSEPAPGISASP--SEDNMRYFNVMILGPTQSPYEGGVFKLELFLP 61
           +++ +R+ KE   L ++P PG++ +    ++++  + V + G   + YEG  F+L     
Sbjct: 2   ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 62  EEYPMAAPKVRFLTKI--YHPNIDKLGRICLDILKDKWSPALQIRTVLL 108
             YP  +P+V F  +    HP++   G ICL IL + WSPAL +++V L
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCL 110
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109 Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152 Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156 Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161 Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149 Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156 Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150 Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157 Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149 Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136 Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148 Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154 Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161 Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158 Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query113
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 100.0
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 100.0
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 100.0
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 100.0
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 100.0
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 100.0
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 100.0
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 100.0
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 100.0
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 100.0
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 100.0
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 100.0
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 99.87
d1uzxa_152 Vacuolar protein sorting-associated {Baker's yeast 99.81
d2in1a1162 Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie 98.65
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 96.87
d2daxa1140 Uncharacterized protein C21orf6 {Human (Homo sapie 91.7
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 91.65
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 91.06
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-45  Score=233.21  Aligned_cols=111  Identities=32%  Similarity=0.634  Sum_probs=104.0

Q ss_pred             CCCCchHHHHHHHHHHHhcCCCCCeEEEe--CCCCCcEEEEEEEcCCCCCCCCCEEEEEEeCCCCCCCCCCeEEEeccC-
Q 033710            1 MANSNLPRRIIKETQRLLSEPAPGISASP--SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-   77 (113)
Q Consensus         1 ma~~~~~~RL~~E~~~l~~~~~~gi~~~~--~~~~~~~w~~~i~gp~~t~y~g~~f~~~i~f~~~YP~~pP~v~f~t~i-   77 (113)
                      ||+.  .|||++|++++++++++|+++.+  .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ 
T Consensus         1 m~~~--~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~   78 (117)
T d2a7la1           1 MASM--QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENI   78 (117)
T ss_dssp             GTTS--CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCC
T ss_pred             CCcH--HHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCc
Confidence            6664  58999999999999999998864  567999999999999999999999999999999999999999999976 


Q ss_pred             -ccceeeCCCcEEcccCCCCCCccccHHHHHHHhhcC
Q 033710           78 -YHPNIDKLGRICLDILKDKWSPALQIRTVLLRYCEL  113 (113)
Q Consensus        78 -~HPnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l  113 (113)
                       |||||+.+|.||+++|.++|+|++++++||++|++|
T Consensus        79 ~~Hpnv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~l  115 (117)
T d2a7la1          79 PVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISM  115 (117)
T ss_dssp             CCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHH
T ss_pred             cccccCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHH
Confidence             999999999999999999999999999999999975
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure