Citrus Sinensis ID: 033715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQaqgnrpargttqgslnhqecapkchyrcsatsykkpclffcqkccakclcvpagtygnkqtcpcynnwktkrggpkcp
Flexible Loop (DISEMBL)
MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGtygnkqtcpcynnwktkrggpkcp
Low Complexity Region (SEG)
marmlrlvvlfvalmlvlvaQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP
Disordered region (IsUnstruct)
***MLRLVVLFVALMLVLVAQNQAAGTGI************************ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWK*********
Disordered Region (DISOPRED)
****LRLVVLFVALMLVLVAQNQAA*****************************CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKR******
Disordered Region (DISEMBL)
MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQ*******************QECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWK*********
Disordered Region (DISPRO)
*ARMLRLVVLFVALMLVLVAQNQAAGTGIA******************SLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKT******C*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
P27057	112	Protein GAST1 OS=Solanum	N/A	no	0.619	0.625	0.828	5e-30
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.566	0.666	0.75	6e-24
Q6NMQ7	101	Gibberellin-regulated pro	yes	no	0.893	1.0	0.481	6e-24
Q6GKX7	106	Gibberellin-regulated pro	no	no	0.920	0.981	0.535	4e-23
P46690	106	Gibberellin-regulated pro	no	no	0.858	0.915	0.463	4e-21
A8MR46	103	Gibberellin-regulated pro	no	no	0.911	1.0	0.495	2e-18
Q84J95	97	Gibberellin-regulated pro	no	no	0.619	0.721	0.736	6e-18
P86888	63	Peamaclein OS=Prunus pers	N/A	no	0.522	0.936	0.559	2e-12
O80641	87	Gibberellin-regulated pro	no	no	0.548	0.712	0.483	9e-12
O82328	108	Gibberellin-regulated pro	no	no	0.646	0.675	0.438	1e-10

>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 64/70 (91%)

Query: 44  GTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNW 103
           G ++G L+ Q+C PKC YRCS TSYKKPC+FFCQKCCAKCLCVPAGTYGNKQ+CPCYNNW
Sbjct: 43  GVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNW 102

Query: 104 KTKRGGPKCP 113
           KTKRGGPKCP
Sbjct: 103 KTKRGGPKCP 112

Solanum lycopersicum (taxid: 4081)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 50  LNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGG 109
           L   +C P+C YRCSATS+KKPC+FFCQKCCA CLCVP G YGNKQ+CPCYNNWKT+ G 
Sbjct: 33  LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGK 92

Query: 110 PKCP 113
           PKCP
Sbjct: 93  PKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 65/110 (59%), Gaps = 9/110 (8%)

Query: 4   MLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRC 63
           M +L+  F+ L ++                +  +          GSL   +C  +C  RC
Sbjct: 1   MAKLITSFLLLTILFT---------FVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRC 51

Query: 64  SATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           S T Y KPC+FFCQKCCAKCLCVP GTYGNKQ CPCYNNWKT++GGPKCP
Sbjct: 52  SNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GKX7|GASAC_ARATH Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 8/112 (7%)

Query: 4   MLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPA--RGTTQGSLNHQECAPKCHY 61
           M++L+V+FV   L+   Q           +L++Q   PA  +   +GSL  +EC   C Y
Sbjct: 1   MMKLIVVFVISSLLFATQFSNG------DELESQAQAPAIHKNGGEGSLKPEECPKACEY 54

Query: 62  RCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           RCSATS++KPCLFFC KCC KCLCVP+GTYG+K+ CPCYNNW TK GGPKCP
Sbjct: 55  RCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 65/110 (59%), Gaps = 13/110 (11%)

Query: 4   MLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRC 63
           +L L+VLF+   +V+ +    +G+ +  SQ         +    GSL   +C  +C  RC
Sbjct: 10  LLTLIVLFMLQTMVMAS----SGSNVKWSQ---------KRYGPGSLKRTQCPSECDRRC 56

Query: 64  SATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
             T Y K C+ FC KCC KCLCVP G YGNKQ C CYNNWKT+ GGPKCP
Sbjct: 57  KKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta.

Arabidopsis thaliana (taxid: 3702)

>sp|A8MR46|GASAD_ARATH Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 67/113 (59%), Gaps = 10/113 (8%)

Query: 1   MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCH 60
           MA  L ++V  + ++ +L++ +      + A         P            EC P+C 
Sbjct: 1   MATKLSIIVFSIVVLHLLLSAHMHFLINVCAECETKSAIPPLL----------ECGPRCG 50

Query: 61  YRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
            RCS T YKKPCLFFC KCC KCLCVP GTYGNKQ CPCYNNWKTK GGPKCP
Sbjct: 51  DRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J95|GASA5_ARATH Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 58/72 (80%), Gaps = 2/72 (2%)

Query: 42  ARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYN 101
           ARG   G L  Q+C  KC +RCSATS+KKPC+FFC KCC KCLCVP GT+GNKQTCPCYN
Sbjct: 28  ARGG--GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYN 85

Query: 102 NWKTKRGGPKCP 113
           NWKTK G PKCP
Sbjct: 86  NWKTKEGRPKCP 97

Gibberellin-regulated protein that acts as a negative regulator of gibberellin-induced flowering and stem growth. May inhibit flowering and inflorescence growth via a pathway involving GAI and by enhancing FLC expression and repressing FT and LFY. Acts as a negative regulator in thermotolerance by resogulating both salicylic acid (SA) signaling and heat shock-protein accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|P86888|PMLN_PRUPE Peamaclein OS=Prunus persica PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 39/59 (66%)

Query: 55  CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           C  KC  RCS   Y++ CL +C  CC KC CVP+GTYGNK  CPCY + K  +G PKCP
Sbjct: 5   CDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63

Prunus persica (taxid: 3760)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 38/62 (61%)

Query: 52  HQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPK 111
              C  KC+ RCS     + CL +C  CC KC CVP+GT+G+K  CPCY + K  +GG K
Sbjct: 26  DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSK 85

Query: 112 CP 113
           CP
Sbjct: 86  CP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O82328|GASA7_ARATH Gibberellin-regulated protein 7 OS=Arabidopsis thaliana GN=GASA7 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 39/73 (53%)

Query: 41  PARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCY 100
           PA  +  G    + C  KC  RC     K  CL +C  CC  C CVP+GTYGNK  C CY
Sbjct: 36  PAPQSKDGPALEKWCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACY 95

Query: 101 NNWKTKRGGPKCP 113
            +  + +G PKCP
Sbjct: 96  RDKLSSKGTPKCP 108

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
146454672	117	gibberellin induced protein [Sonneratia	1.0	0.965	0.637	8e-37
146454670	117	gibberellin induced protein [Sonneratia	1.0	0.965	0.620	6e-36
146454676	117	gibberellin induced protein [Sonneratia	1.0	0.965	0.620	1e-35
146454674	117	gibberellin induced protein [Sonneratia	1.0	0.965	0.612	2e-35
255578447	116	GAST1 protein precursor, putative [Ricin	1.0	0.974	0.601	3e-34
383932364	111	GASA-like protein [Gossypium hirsutum] g	0.964	0.981	0.652	2e-33
357509559	120	Gibberellin induced protein [Medicago tr	0.973	0.916	0.593	3e-32
59042581	117	GASA2-like protein [Pelargonium zonale]	0.991	0.957	0.591	4e-32
12003266	112	gibberellin-induced protein 1 [Petunia x	0.955	0.964	0.651	4e-32
16516821	112	gibberellin induced protein 3 [Petunia x	0.955	0.964	0.642	5e-32

>gi|146454672|gb|ABQ42002.1| gibberellin induced protein [Sonneratia caseolaris]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 92/116 (79%), Gaps = 3/116 (2%)

Query: 1   MARMLRLVVLFVALMLVLV-AQNQAAGTGIAASQLQAQGNRPAR--GTTQGSLNHQECAP 57
           MA++  +++LF A + VL+  + +A+ +G+AA++LQ QG    +  G ++GSL  QEC P
Sbjct: 2   MAKLASILILFAAFLFVLLLDETKASSSGVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 58  KCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           +C  RCSATSYKKPCLFFCQKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSYKKPCLFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

Source: Sonneratia caseolaris

Species: Sonneratia caseolaris

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454670|gb|ABQ42001.1| gibberellin induced protein [Sonneratia alba]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 3/116 (2%)

Query: 1   MARMLRLVVLFVALMLVLV-AQNQAAGTGIAASQLQAQGNRPAR--GTTQGSLNHQECAP 57
           MA++  +++LF A + VL+  + +A+ + +AA++LQ QG    +  G ++GSL  QEC P
Sbjct: 2   MAKLASILILFAAFLFVLLLEETEASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 58  KCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           +C  RCSATSYKKPC+FFCQKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSYKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454676|gb|ABQ42004.1| gibberellin induced protein [Sonneratia apetala]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 91/116 (78%), Gaps = 3/116 (2%)

Query: 1   MARMLRLVVLFVALMLVLV-AQNQAAGTGIAASQLQAQGNRPAR--GTTQGSLNHQECAP 57
           MA++  +++LF A + VL+  + +A+ + +AA++LQ QG    +  G ++GSL  QEC P
Sbjct: 2   MAKLASILILFAAFLFVLLLDETKASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 58  KCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           +C  RCSATSYKKPC+FFCQKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSYKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

Source: Sonneratia apetala

Species: Sonneratia apetala

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454674|gb|ABQ42003.1| gibberellin induced protein [Sonneratia ovata]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 91/116 (78%), Gaps = 3/116 (2%)

Query: 1   MARMLRLVVLFVALMLVLV-AQNQAAGTGIAASQLQAQGNRPAR--GTTQGSLNHQECAP 57
           MA++  +++LF A + VL+  + +A+ + +AA++LQ QG    +  G ++GSL  QEC P
Sbjct: 2   MAKLASILILFAAFLFVLLLDETKASSSVVAANELQLQGRDINKMYGISEGSLRPQECGP 61

Query: 58  KCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           +C  RCSATS+KKPC+FFCQKCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 62  RCTRRCSATSFKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTKRGGPKCP 117

Source: Sonneratia ovata

Species: Sonneratia ovata

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578447|ref|XP_002530088.1| GAST1 protein precursor, putative [Ricinus communis] gi|223530399|gb|EEF32287.1| GAST1 protein precursor, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 82/113 (72%)

Query: 1   MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCH 60
           M R     +  +ALML+ + ++ A+ +   A Q Q   + P  G+TQGSL  Q+C P+C 
Sbjct: 4   MMRKASFAMFVLALMLLFILESHASTSEAPAPQPQQNSSLPKYGSTQGSLQPQDCGPQCT 63

Query: 61  YRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
            RCS T Y KPC+FFCQKCCAKCLCVP+GTYGNKQTCPCYNNWKTKRGGPKCP
Sbjct: 64  RRCSKTQYHKPCMFFCQKCCAKCLCVPSGTYGNKQTCPCYNNWKTKRGGPKCP 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932364|gb|AFH57279.1| GASA-like protein [Gossypium hirsutum] gi|445069058|gb|AGE15503.1| GA-stimulated transcript-like protein 7 [Gossypium hirsutum]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 88/115 (76%), Gaps = 6/115 (5%)

Query: 1   MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRP--ARGTTQGSLNHQECAPK 58
           MA+ L +V+L   L++VL+ + QA+    + SQ Q QGN      G TQGSL  QEC P+
Sbjct: 1   MAKSLVIVMLCFLLVIVLLGEIQAS----SPSQKQRQGNHGNGMYGATQGSLRPQECGPR 56

Query: 59  CHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           C  RCSAT+YKKPC+FFCQKCCAKCLCVP GTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 57  CTQRCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQSCPCYNNWKTKRGGPKCP 111

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509559|ref|XP_003625068.1| Gibberellin induced protein [Medicago truncatula] gi|87241442|gb|ABD33300.1| Gibberellin regulated protein [Medicago truncatula] gi|355500083|gb|AES81286.1| Gibberellin induced protein [Medicago truncatula]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 84/123 (68%), Gaps = 13/123 (10%)

Query: 1   MARMLRLVVLFVALMLVLVAQNQAAGTGIAASQLQAQGNRPAR----------GTTQGSL 50
           MAR + +VVLF+  ML+L  QN A    I  S ++A   +P++          G T+GSL
Sbjct: 1   MARKMCIVVLFLVQMLLLPLQNHAE---IVVSTVEAPAPQPSKSSGTNQFPNHGITEGSL 57

Query: 51  NHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGP 110
             QEC P+C  RCS T YKKPCLFFC KCCAKCLCVP G YGNKQ CPCYNNWKTKRGGP
Sbjct: 58  QPQECGPRCTNRCSNTQYKKPCLFFCNKCCAKCLCVPPGYYGNKQVCPCYNNWKTKRGGP 117

Query: 111 KCP 113
           KCP
Sbjct: 118 KCP 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|59042581|gb|AAW83819.1| GASA2-like protein [Pelargonium zonale]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 80/115 (69%), Gaps = 3/115 (2%)

Query: 2   ARMLRLVVLFVALMLVLVAQNQAAGTGIA---ASQLQAQGNRPARGTTQGSLNHQECAPK 58
           A+ L +V+  + +M +L+  N A  + I    + Q  +Q N    G T+GSL  QEC P+
Sbjct: 3   AKKLCIVIFPLVIMFLLLQDNFATSSSITEAPSPQPHSQSNHTMYGITEGSLQPQECGPR 62

Query: 59  CHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           C  RCS T YKKPCLFFC KCCAKCLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 63  CSERCSNTQYKKPCLFFCNKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 117

Source: Pelargonium zonale

Species: Pelargonium zonale

Genus: Pelargonium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12003266|gb|AAG43509.1|AF210049_1 gibberellin-induced protein 1 [Petunia x hybrida] gi|16516819|emb|CAD10103.1| putative gibberellin induced protein 2 [Petunia x hybrida]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 6   RLVVLFVALMLVLVAQNQAA-GTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCS 64
           +L ++   L++VL+AQNQ +    +  S++Q +GN    G +QGSL+ Q+C PKC YRCS
Sbjct: 4   KLSIVLFVLLVVLLAQNQVSMAKKVLDSKVQRRGNDQIYGVSQGSLHPQDCQPKCTYRCS 63

Query: 65  ATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
            TS+KKPC+FFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTK GGPKCP
Sbjct: 64  KTSFKKPCMFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKEGGPKCP 112

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16516821|emb|CAD10104.1| gibberellin induced protein 3 [Petunia x hybrida]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 6   RLVVLFVALMLVLVAQNQAA-GTGIAASQLQAQGNRPARGTTQGSLNHQECAPKCHYRCS 64
           +L ++   L++VL+AQNQ +    +  +++Q +GN    G +QGSL+ Q+C PKC YRCS
Sbjct: 4   KLSIILFVLLVVLLAQNQVSMAKMVLDAKVQRRGNDQIYGVSQGSLHPQDCQPKCTYRCS 63

Query: 65  ATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
            TS+KKPC+FFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTK GGPKCP
Sbjct: 64  KTSFKKPCMFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKEGGPKCP 112

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.716	0.764	0.638	7.9e-30
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.619	0.721	0.736	7.1e-29
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.584	0.653	0.742	3.9e-28
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.530	0.582	0.816	5e-28
TAIR|locus:2150896	106	GASA4 "AT5G15230" [Arabidopsis	0.584	0.622	0.636	1.4e-23
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.522	0.678	0.508	4.7e-16
TAIR|locus:4010713424	90	AT1G10588 [Arabidopsis thalian	0.575	0.722	0.515	1.3e-15
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	0.522	0.662	0.516	3.3e-15
TAIR|locus:2060485	108	AT2G14900 "AT2G14900" [Arabido	0.646	0.675	0.438	6.9e-15
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.530	0.218	0.508	4.9e-14

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 53/83 (63%), Positives = 64/83 (77%)

Query:    33 QLQAQGNRPA--RGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGT 90
             +L++Q   PA  +   +GSL  +EC   C YRCSATS++KPCLFFC KCC KCLCVP+GT
Sbjct:    24 ELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGT 83

Query:    91 YGNKQTCPCYNNWKTKRGGPKCP 113
             YG+K+ CPCYNNW TK GGPKCP
Sbjct:    84 YGHKEECPCYNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 53/72 (73%), Positives = 58/72 (80%)

Query:    42 ARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYN 101
             ARG   G L  Q+C  KC +RCSATS+KKPC+FFC KCC KCLCVP GT+GNKQTCPCYN
Sbjct:    28 ARGG--GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYN 85

Query:   102 NWKTKRGGPKCP 113
             NWKTK G PKCP
Sbjct:    86 NWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 49/66 (74%), Positives = 54/66 (81%)

Query:    48 GSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKR 107
             GSL   +C  +C  RCS T Y KPC+FFCQKCCAKCLCVP GTYGNKQ CPCYNNWKT++
Sbjct:    36 GSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQ 95

Query:   108 GGPKCP 113
             GGPKCP
Sbjct:    96 GGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 49/60 (81%), Positives = 50/60 (83%)

Query:    54 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
             EC P+C  RCS T YKKPCLFFC KCC KCLCVP GTYGNKQ CPCYNNWKTK GGPKCP
Sbjct:    44 ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2150896 GASA4 "AT5G15230" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 42/66 (63%), Positives = 46/66 (69%)

Query:    48 GSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKR 107
             GSL   +C  +C  RC  T Y K C+ FC KCC KCLCVP G YGNKQ C CYNNWKT+ 
Sbjct:    41 GSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQE 100

Query:   108 GGPKCP 113
             GGPKCP
Sbjct:   101 GGPKCP 106

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 30/59 (50%), Positives = 38/59 (64%)

Query:    55 CAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
             C  KC+ RCS     + CL +C  CC KC CVP+GT+G+K  CPCY + K  +GG KCP
Sbjct:    29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713424 AT1G10588 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 34/66 (51%), Positives = 39/66 (59%)

Query:    49 SLNHQECAPKCHYRCS-ATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKR 107
             S +   C  KC  RCS A    + CL  C  CC KC CVP+GTYGNK  CPCY + K  +
Sbjct:    25 SADSSACGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSK 84

Query:   108 GGPKCP 113
             GG KCP
Sbjct:    85 GGSKCP 90

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query:    55 CAPKCHYRCSATSYKKPCLFFCQKCCAKC-LCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
             C  KC+ RCS    +  CL +C  CC KC  CVP+GTYGNK  CPCY + K  +G  KCP
Sbjct:    30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2060485 AT2G14900 "AT2G14900" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 32/73 (43%), Positives = 39/73 (53%)

Query:    41 PARGTTQGSLNHQECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCY 100
             PA  +  G    + C  KC  RC     K  CL +C  CC  C CVP+GTYGNK  C CY
Sbjct:    36 PAPQSKDGPALEKWCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACY 95

Query:   101 NNWKTKRGGPKCP 113
              +  + +G PKCP
Sbjct:    96 RDKLSSKGTPKCP 108

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 31/61 (50%), Positives = 36/61 (59%)

Query:    54 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTC-PCYNNWKTKRGGPKC 112
             +C P C  RC   S K  C+  C  CC +C CVP GTYGNK+ C  CY N KT+ G  KC
Sbjct:   215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query:   113 P 113
             P
Sbjct:   275 P 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NMQ7	GASA6_ARATH	No assigned EC number	0.4818	0.8938	1.0	yes	no
P27057	GAST1_SOLLC	No assigned EC number	0.8285	0.6194	0.625	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025322001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (103 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	4e-29

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 99.3 bits (248), Expect = 4e-29
 Identities = 44/60 (73%), Positives = 45/60 (75%)

Query: 54  ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP 113
           +C  KC  RCS TS KKPCL  C KCCAKCLCVP GTYGNK  CPCYNNWKT  G PKCP
Sbjct: 1   DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=5.7e-37  Score=203.08  Aligned_cols=60  Identities=58%  Similarity=1.333  Sum_probs=59.4

Q ss_pred             CChhHhhHHhhcCCCCChHHHHHHHhccCccccCCCCCCCCCCCCcccccccCCCCCCCC
Q 033715           54 ECAPKCHYRCSATSYKKPCLFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKRGGPKCP  113 (113)
Q Consensus        54 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~kC~CVP~GtyGnk~~CPCY~~m~t~~g~pKCP  113 (113)
                      ||+++|++|||+++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00