Citrus Sinensis ID: 033749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccccccccccccccccccccEEEEEccccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHccccccccEEEcEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHEEcccHHHcccccccccccccccEEEEEEccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHcccccccccccEEEEEc
Coil and Loop (DISEMBL)
MGSGEKNLRHFHlhlphlhhhgkkqvirdvpkgclaikvgqgeeqqrVVVPVIYFNHPLFMQLLKEAEEeygfdqkgtitipchVEEFRYVQgmidrenslhhhhhvgcfrv
Flexible Loop (DISEMBL)
MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKvgqgeeqqrvVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENslhhhhhvgcfrv
Low Complexity Region (SEG)
MGSGEKNlrhfhlhlphlhhhGKKQVIRDVPKGCLAIKvgqgeeqqrvvvpvIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV
Disordered region (IsUnstruct)
********RHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMI*****************
Disordered Region (DISOPRED)
*********************************CLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDR*****HHHHVGCFRV
Disordered Region (DISEMBL)
MGSGEKNLRHFHLHLPH*********IRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV
Disordered Region (DISPRO)
*****K*LRHFHLH*P**********IRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSL***HHVGCFRV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.625	0.760	0.424	4e-10
P33081	82	Auxin-induced protein 15A	no	no	0.705	0.963	0.4	5e-10
P33079	93	Auxin-induced protein 10A	no	no	0.517	0.623	0.508	5e-10
P33082	82	Auxin-induced protein X15	no	no	0.544	0.743	0.5	9e-10
P33080	92	Auxin-induced protein X10	no	no	0.544	0.663	0.468	3e-09
P33083	90	Auxin-induced protein 6B	no	no	0.589	0.733	0.434	9e-09

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 27 IRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD-QKGTITIPCHV 85
          + D PKG LA+ VG  E  +R V+PV + N PLF  LL +AEEE+G+D   G +TIPC  
Sbjct: 22 VLDAPKGYLAVYVG--ENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSE 79

Query: 86 EEFRYVQGMIDRE 98
          + F+++   +  +
Sbjct: 80 DLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 13 LHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYG 72
            LP +    K     D PKG LA+ VG  E+ +R V+PV Y N P F  LL +AEEE+G
Sbjct: 3  FRLPGIRKASKAA---DAPKGYLAVYVG--EKLKRFVIPVSYLNQPSFQDLLSQAEEEFG 57

Query: 73 FD-QKGTITIPCHVEEFRYVQGMID 96
          +D   G +TIPC  + F+ +   ++
Sbjct: 58 YDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 3/61 (4%)

Query: 29 DVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD-QKGTITIPCHVEE 87
          DVPKG  A+ VG  ++ +R  +PV Y N P F +LL +AEEE+G+D   G +TIPC  EE
Sbjct: 25 DVPKGYAAVYVG--DKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 82

Query: 88 F 88
          F
Sbjct: 83 F 83

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 29 DVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD-QKGTITIPCHVEE 87
          D PKG LA+ VG  E+ +R V+PV Y N P F  LL +AEEE+G+D   G +TIPC  E 
Sbjct: 16 DAPKGYLAVYVG--EKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEV 73

Query: 88 FRYV 91
          F+ +
Sbjct: 74 FQRI 77

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 29 DVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD-QKGTITIPCHVEE 87
          +VPKG L + VG  ++ +R ++PV Y N P F  LL +AEEE+G+D   G +TIPC  +E
Sbjct: 24 EVPKGYLVVYVG--DKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDE 81

Query: 88 FRYV 91
          F  V
Sbjct: 82 FLTV 85

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 29 DVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGF-DQKGTITIPCHVEE 87
          DV KG LA+ VG  E+ +R V+PV Y N P F  LL +AEEE+G+    G +TIPC  + 
Sbjct: 24 DVEKGYLAVYVG--EKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDV 81

Query: 88 FRYVQGMID 96
          F+++   ++
Sbjct: 82 FQHITSFLN 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225453575	115	PREDICTED: auxin-induced protein 10A5 [V	0.973	0.947	0.805	1e-42
224128011	110	SAUR family protein [Populus trichocarpa	0.982	1.0	0.866	9e-42
224064344	111	SAUR family protein [Populus trichocarpa	0.991	1.0	0.839	1e-40
357512597	105	Auxin-induced protein X15 [Medicago trun	0.919	0.980	0.754	1e-39
302143962	116	unnamed protein product [Vitis vinifera]	0.892	0.862	0.742	3e-36
225455256	121	PREDICTED: indole-3-acetic acid-induced	0.866	0.801	0.755	1e-35
15226425	121	SAUR-like auxin-responsive protein [Arab	0.928	0.859	0.635	2e-35
357464091	135	Auxin-induced protein 10A5 [Medicago tru	0.901	0.748	0.725	2e-35
297810077	122	auxin-responsive family protein [Arabido	0.875	0.803	0.72	2e-35
388498934	114	unknown [Medicago truncatula]	0.901	0.885	0.725	6e-35

>gi|225453575|ref|XP_002263012.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 101/118 (85%), Gaps = 9/118 (7%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MGSGEK L +FHLHLPHLH  GKKQ  RDVPKGCLAIKVGQGEEQQR +VPVIYFNHPLF
Sbjct: 1   MGSGEKGLLNFHLHLPHLH--GKKQY-RDVPKGCLAIKVGQGEEQQRFIVPVIYFNHPLF 57

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHV------GCFRV 112
           MQLLKEAEEEYGF+Q+G ITIPCHVEEFRYVQGMIDRE+SLH  +H       GCFRV
Sbjct: 58  MQLLKEAEEEYGFEQQGAITIPCHVEEFRYVQGMIDREHSLHPQNHNHHHHHGGCFRV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128011|ref|XP_002320219.1| SAUR family protein [Populus trichocarpa] gi|222860992|gb|EEE98534.1| SAUR family protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 103/112 (91%), Gaps = 2/112 (1%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MGSGEK+LR+FHLHLPHLHHH K+   RDVPKGCLAIKVGQGEEQQR VVPVIYFNHPLF
Sbjct: 1   MGSGEKSLRNFHLHLPHLHHHKKQ--ARDVPKGCLAIKVGQGEEQQRFVVPVIYFNHPLF 58

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV 112
           +QLLKEAEEEYGFDQKGTI+IPCHVEEFR VQGMIDRE S+HHHH VGCFR 
Sbjct: 59  IQLLKEAEEEYGFDQKGTISIPCHVEEFRNVQGMIDREKSIHHHHLVGCFRA 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064344|ref|XP_002301429.1| SAUR family protein [Populus trichocarpa] gi|222843155|gb|EEE80702.1| SAUR family protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 102/112 (91%), Gaps = 1/112 (0%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MG GEK+L++FHLHLP+LHHH  K+  RDVPKGCLAIKVGQGEEQQR VVPVIYFNHPLF
Sbjct: 1   MGGGEKSLKNFHLHLPNLHHHHHKKQARDVPKGCLAIKVGQGEEQQRFVVPVIYFNHPLF 60

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV 112
           +QLLKEAEEEYGFDQKGTITIPCHVEEF YVQGMID+E  + HHHHVGCFRV
Sbjct: 61  IQLLKEAEEEYGFDQKGTITIPCHVEEFMYVQGMIDKEKPI-HHHHVGCFRV 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512597|ref|XP_003626587.1| Auxin-induced protein X15 [Medicago truncatula] gi|355501602|gb|AES82805.1| Auxin-induced protein X15 [Medicago truncatula]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 91/110 (82%), Gaps = 7/110 (6%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MGSGE++ + F LH       GKKQ  R VPKGCLAIKVGQGE+QQR VVPVIYFNHPLF
Sbjct: 1   MGSGERSFKGFLLH-------GKKQEFRGVPKGCLAIKVGQGEDQQRFVVPVIYFNHPLF 53

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCF 110
           MQLLKEAEEEYGFD KG ITIPC VEEFR ++G+IDRE SLHH+HHVGCF
Sbjct: 54  MQLLKEAEEEYGFDHKGAITIPCRVEEFRNIRGLIDREKSLHHNHHVGCF 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143962|emb|CBI23067.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 88/101 (87%), Gaps = 1/101 (0%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MGSGEKN  +FH+H+ H + + KK+ +RD+PKGCLA+ VGQGEEQQR V+PVIY NHPLF
Sbjct: 1   MGSGEKNFLNFHMHVHHGNGNNKKE-MRDIPKGCLAVLVGQGEEQQRFVIPVIYINHPLF 59

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSL 101
           M+LLKEAEEEYGF+QKG ITIPCHVEEFRYVQGMID+E  L
Sbjct: 60  MELLKEAEEEYGFEQKGPITIPCHVEEFRYVQGMIDKEKPL 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455256|ref|XP_002273092.1| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera] gi|147833400|emb|CAN64099.1| hypothetical protein VITISV_014898 [Vitis vinifera]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 1  MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
          MGSGEKN  +FH+H+ H + + KK+ +RD+PKGCLA+ VGQGEEQQR V+PVIY NHPLF
Sbjct: 1  MGSGEKNFLNFHMHVHHGNGNNKKE-MRDIPKGCLAVLVGQGEEQQRFVIPVIYINHPLF 59

Query: 61 MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRE 98
          M+LLKEAEEEYGF+QKG ITIPCHVEEFRYVQGMID+E
Sbjct: 60 MELLKEAEEEYGFEQKGPITIPCHVEEFRYVQGMIDKE 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226425|ref|NP_182192.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|3831443|gb|AAC69926.1| putative auxin-regulated protein [Arabidopsis thaliana] gi|28950689|gb|AAO63268.1| At2g46690 [Arabidopsis thaliana] gi|110736081|dbj|BAF00013.1| putative auxin-regulated protein [Arabidopsis thaliana] gi|330255647|gb|AEC10741.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 94/129 (72%), Gaps = 25/129 (19%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIR--DVPKGCLAIKVG-QGEEQQRVVVPVIYFNH 57
           MG+GEK L+ F LH        +KQ ++  DVPKGCLAIKVG QGEEQQR +VPV+YFNH
Sbjct: 1   MGTGEKTLKSFQLH--------RKQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNH 52

Query: 58  PLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSLH--------------H 103
           PLFMQLLKEAE+EYGFDQKGTITIPCHVEEFRYVQ +ID E S++              +
Sbjct: 53  PLFMQLLKEAEDEYGFDQKGTITIPCHVEEFRYVQALIDGERSVYNGNNHHHRHGGRDQY 112

Query: 104 HHHVGCFRV 112
           HH VGCFR 
Sbjct: 113 HHLVGCFRA 121

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464091|ref|XP_003602327.1| Auxin-induced protein 10A5 [Medicago truncatula] gi|355491375|gb|AES72578.1| Auxin-induced protein 10A5 [Medicago truncatula]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 83/102 (81%), Gaps = 1/102 (0%)

Query: 11  FHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEE 70
           FHLH+PHL+ H   +  +D+PKGCLA+ VGQGEEQQ+ V+PVIY NHPLFMQLLKEAEEE
Sbjct: 35  FHLHIPHLNFHHHHEKNKDIPKGCLAVMVGQGEEQQKFVIPVIYINHPLFMQLLKEAEEE 94

Query: 71  YGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV 112
           YGFD KG I IPC VEEFR VQGMID E S HHHHH  CF+V
Sbjct: 95  YGFDHKGPIIIPCQVEEFRTVQGMIDMEKS-HHHHHAWCFKV 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810077|ref|XP_002872922.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297318759|gb|EFH49181.1| auxin-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 85/100 (85%), Gaps = 2/100 (2%)

Query: 1   MGSGEKNLRHFHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLF 60
           MGSG+K + H+  H+P LHHH        VPKGCLA+KVGQGEEQ+R V+PV+YFNHPLF
Sbjct: 1   MGSGDKVMSHWSFHIPRLHHHEHDH--EKVPKGCLAVKVGQGEEQERFVIPVMYFNHPLF 58

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENS 100
           +QLLKEAEEE+GF QKGTITIPCHVEEFRYV+G+IDREN+
Sbjct: 59  VQLLKEAEEEFGFSQKGTITIPCHVEEFRYVRGLIDRENT 98

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498934|gb|AFK37533.1| unknown [Medicago truncatula]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 83/102 (81%), Gaps = 1/102 (0%)

Query: 11  FHLHLPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEE 70
           FHLH+PHL+ H   +  +D+PKGCLA+ VGQGEEQQ+ V+PVIY NHPLFMQLLKEAEEE
Sbjct: 14  FHLHIPHLNFHHHHEKNKDIPKGCLAVMVGQGEEQQKFVIPVIYINHPLFMQLLKEAEEE 73

Query: 71  YGFDQKGTITIPCHVEEFRYVQGMIDRENSLHHHHHVGCFRV 112
           YGFD KG I IPC VEEFR VQGMID E S HHHHH  CF+V
Sbjct: 74  YGFDHKGPIIIPCQVEEFRTVQGMIDMEKS-HHHHHAWCFKV 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.794	0.735	0.609	6.6e-26
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.741	0.680	0.621	2.2e-25
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.901	0.742	0.588	3.6e-25
TAIR|locus:2168611	142	AT5G53590 "AT5G53590" [Arabido	0.687	0.542	0.475	5.4e-15
TAIR|locus:2101771	170	AT3G60690 [Arabidopsis thalian	0.392	0.258	0.613	7.4e-11
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.651	0.384	0.441	1.5e-10
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.616	0.439	0.457	2.5e-10
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.589	0.412	0.441	1.1e-09
TAIR|locus:2127555	160	AT4G22620 "AT4G22620" [Arabido	0.562	0.393	0.453	1.8e-09
TAIR|locus:2050832	162	SAUR36 "AT2G45210" [Arabidopsi	0.589	0.407	0.477	2.9e-09

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 64/105 (60%), Positives = 71/105 (67%)

Query:    23 KKQV-IRDVPKGCLAIKXXXXXXXXXXXXXXI-YFNHPLFMQLLKEAEEEYGFDQKGTIT 80
             K+ V ++DVPKGCLAIK              + YFNHPLFMQLLKEAE+EYGFDQKGTIT
Sbjct:    16 KQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTIT 75

Query:    81 IPCHVEEFRYVQGMIDRENSL-----HHH--------HH-VGCFR 111
             IPCHVEEFRYVQ +ID E S+     HHH        HH VGCFR
Sbjct:    76 IPCHVEEFRYVQALIDGERSVYNGNNHHHRHGGRDQYHHLVGCFR 120

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/95 (62%), Positives = 65/95 (68%)

Query:    30 VPKGCLAIKXXXXXXXXXXXXXXIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFR 89
             VPKGCLA+K              +YFNHPLF QLLKEAEEE+GF QKGTITIPCHVEEFR
Sbjct:    28 VPKGCLAVKVGQGEEQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEFR 87

Query:    90 YVQGMIDRENSL---------HHHHH---VGCFRV 112
             YVQG+IDREN+          HHHHH   + CFRV
Sbjct:    88 YVQGLIDRENTRFLGTNLLDHHHHHHNHLIRCFRV 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/102 (58%), Positives = 65/102 (63%)

Query:     1 MGSGEKNXXXXXXXXXXXXXXGKKQVIRDVPKGCLAIKXXXXXXXXXXXXXXI-YFNHPL 59
             MGSGEK                 K  I+DVPKGCLAIK              + YFNHPL
Sbjct:     1 MGSGEKILKSVHSNRPNNVKSNSKHGIKDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPL 60

Query:    60 FMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRENSL 101
             FMQLL+EAEEEYGF+QKGTITIPCHVE FRYVQ MI+RE SL
Sbjct:    61 FMQLLREAEEEYGFEQKGTITIPCHVEVFRYVQDMINRERSL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2168611 AT5G53590 "AT5G53590" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 38/80 (47%), Positives = 48/80 (60%)

Query:    29 DVPKGCLAIKXXXXXXXXXXXXXXI---YFNHPLFMQLLKEAEEEYGFDQKGTITIPCHV 85
             DVPKGC+AI               +   + +HPLF+ LLKEAE+EYGF   G ITIPC V
Sbjct:    45 DVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGV 104

Query:    86 EEFRYVQGMIDRENSLHHHH 105
             +EF++VQ +ID E    H H
Sbjct:   105 DEFKHVQEVIDEETHRRHSH 124

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2101771 AT3G60690 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query:    53 IYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMID 96
             +YFNHPLF +LL+EAEEE+GF Q+G ITIPC   +F+ VQ  I+
Sbjct:   112 VYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDFKRVQTRIE 155

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 34/77 (44%), Positives = 44/77 (57%)

Query:    29 DVPKGCLAIKXXXXXXXXXXXXXXIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEF 88
             DVPKG LA+                Y +H LF  LL++AEEE+GFDQ G +TIPC VE F
Sbjct:    78 DVPKGNLAVYVGPELRRFIIPTS--YLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETF 135

Query:    89 RYVQGMIDRENSLHHHH 105
             +Y+   +  EN+L   H
Sbjct:   136 KYLLKCM--ENNLKDLH 150

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/70 (45%), Positives = 40/70 (57%)

Query:    24 KQVIRDVPKGCLAIKXXXXXXXXXXXXX-XIYFNHPLFMQLLKEAEEEYGFDQKGTITIP 82
             K+  R VP+G L +                IYFNHPLF +LL++AE  +GFDQ G ITIP
Sbjct:    70 KKSNRVVPRGHLVVHVGESDDDTRRVVVPVIYFNHPLFGELLEQAERVHGFDQPGRITIP 129

Query:    83 CHVEEFRYVQ 92
             C V +F  VQ
Sbjct:   130 CRVSDFEKVQ 139

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query:    29 DVPKGCLAIKXXXXXXXXXXXXXXIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEF 88
             DVPKG LA+                + +H LF  LL++AEEEYGFD  G +TIPC VE F
Sbjct:    78 DVPKGYLAVYVGPELRRFIIPTN--FLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETF 135

Query:    89 RYVQGMID 96
             +Y+   I+
Sbjct:   136 KYLLKCIE 143

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2127555 AT4G22620 "AT4G22620" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/64 (45%), Positives = 36/64 (56%)

Query:    30 VPKGCLAIKXXXXXXXXXXXXX-XIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEF 88
             VP+G L +                IYFNHPLF +LL++AE  YGF+Q G I IPC V +F
Sbjct:    79 VPRGHLVVHVGESGEDTRRVVVPVIYFNHPLFGELLEQAERVYGFEQPGRIMIPCRVSDF 138

Query:    89 RYVQ 92
               VQ
Sbjct:   139 EKVQ 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2050832 SAUR36 "AT2G45210" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 32/67 (47%), Positives = 39/67 (58%)

Query:    30 VPKGCLAIKXXXXXXXXXXXXXXI-YFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEF 88
             VP+G LAI               I YFNHPLF +LL+EAE+EYGF  +G ITIPC   +F
Sbjct:    79 VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGITIPCLYSDF 138

Query:    89 RYVQGMI 95
               V+  I
Sbjct:   139 ERVKTRI 145

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:1900057 "positive regulation of leaf senescence" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026137001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (115 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-33
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-14
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-14
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-12
TIGR03289	275	TIGR03289, frhB, coenzyme F420 hydrogenase, subuni	0.001
PRK09325	282	PRK09325, PRK09325, coenzyme F420-reducing hydroge	0.003

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  110 bits (277), Expect = 5e-33
 Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 15 LPHLHHHGKKQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFD 74
                   K    DVPKG  A+ VG  EE +R VVP+ Y NHPLF +LL  AEEE+GFD
Sbjct: 20 SGRSRGSSSKSSSADVPKGHFAVYVG--EETRRFVVPISYLNHPLFQELLDRAEEEFGFD 77

Query: 75 QKGTITIPCHVEEFRYVQGMI 95
          Q G +TIPC V  F ++  M+
Sbjct: 78 QDGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 64.0 bits (155), Expect = 1e-14
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 30  VPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQK-GTITIPCHVEEF 88
           VPKG +A+ VG+  E++R VVP+ Y NHPLF + L  AEEE GF    G +TIPC  E F
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Query: 89  RYV 91
            ++
Sbjct: 99  LHL 101

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 62.5 bits (152), Expect = 4e-14
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 29  DVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEF 88
           DVPKG   + VG  E + R +VP+ +  HP F  LL++AEEE+GFD    +TIPC    F
Sbjct: 39  DVPKGHFPVYVG--ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVF 96

Query: 89  RYVQGMI 95
           R +  MI
Sbjct: 97  RSLTSMI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 58.2 bits (140), Expect = 2e-12
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 30 VPKGCLAIKVGQG--EEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQK-GTITIPCHVE 86
          VPKG +A+ VG+    E++R VVP+ + NHP F + L  AEEE+GF+   G +TIPC  E
Sbjct: 35 VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 87 EF 88
           F
Sbjct: 95 VF 96

Length = 105

>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQ 92
           + +LKEA  EYG ++ GT+  PC V   R  Q
Sbjct: 80  LSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQ 111

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively. Length = 275

>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit beta; Validated

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 61  MQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQ 92
           + +LKEA  EYG D+ G +  PC ++  R  Q
Sbjct: 82  VSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQ 113

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	99.98
PLN03090	104	auxin-responsive family protein; Provisional	99.98
PLN03219	108	uncharacterized protein; Provisional	99.97
PLN03220	105	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	87.78
PRK02315	233	adaptor protein; Provisional	85.03
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.61

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=99.98  E-value=1.1e-32  Score=194.07  Aligned_cols=67  Identities=57%  Similarity=0.987  Sum_probs=64.7

Q ss_pred             cCCCCCceEEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHhcCCCCCCceEEcCcHHHHHHHHHHH
Q 033749           27 IRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMI   95 (112)
Q Consensus        27 ~~~vpkG~~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~~G~L~IPC~~~~Fe~vl~~l   95 (112)
                      ..++|+||||||||  ++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+.
T Consensus        33 ~~~vp~G~~~VyVG--~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   33 ESDVPKGHFAVYVG--EERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             cCCCCCCeEEEEeC--ccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence            48899999999998  78999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=99.98  E-value=1.4e-32  Score=196.33  Aligned_cols=69  Identities=45%  Similarity=0.829  Sum_probs=65.8

Q ss_pred             cccCCCCCceEEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHhcCCCCCCceEEcCcHHHHHHHHHHH
Q 033749           25 QVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMI   95 (112)
Q Consensus        25 ~~~~~vpkG~~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~~G~L~IPC~~~~Fe~vl~~l   95 (112)
                      ..+.+|||||||||||  ++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++||.
T Consensus        35 ~~~~~vpkG~~aVyVG--~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         35 GLPLDVPKGHFPVYVG--ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             cCCCCCCCCcEEEEEC--CCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            4677899999999998  67899999999999999999999999999999999999999999999999986

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=5e-32  Score=194.68  Aligned_cols=72  Identities=44%  Similarity=0.740  Sum_probs=66.3

Q ss_pred             ccccCCCCCceEEEEEccCCcceEEEEeccccCcHHHHHHHHHHHHhcCCCC-CCceEEcCcHHHHHHHHHHH
Q 033749           24 KQVIRDVPKGCLAIKVGQGEEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQ-KGTITIPCHVEEFRYVQGMI   95 (112)
Q Consensus        24 ~~~~~~vpkG~~aVYVG~g~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~-~G~L~IPC~~~~Fe~vl~~l   95 (112)
                      ...+.+|||||+|||||+++|++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++|+...
T Consensus        33 ~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         33 TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            4556789999999999965679999999999999999999999999999997 69999999999999999764

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=8.7e-32  Score=192.64  Aligned_cols=72  Identities=42%  Similarity=0.757  Sum_probs=65.0

Q ss_pred             CccccCCCCCceEEEEEccC--CcceEEEEeccccCcHHHHHHHHHHHHhcCCCC-CCceEEcCcHHHHHHHHHH
Q 033749           23 KKQVIRDVPKGCLAIKVGQG--EEQQRVVVPVIYFNHPLFMQLLKEAEEEYGFDQ-KGTITIPCHVEEFRYVQGM   94 (112)
Q Consensus        23 ~~~~~~~vpkG~~aVYVG~g--~e~~RFvVPv~yLnhP~F~~LL~~AeEEfG~~~-~G~L~IPC~~~~Fe~vl~~   94 (112)
                      +.+.+.+|||||||||||++  .+++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++.-
T Consensus        28 ~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         28 SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             cccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            34567789999999999953  258999999999999999999999999999998 6999999999999999864

>PRK02899 adaptor protein; Provisional

Probab=87.78  E-value=0.5  Score=36.67  Aligned_cols=24  Identities=38%  Similarity=0.830  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCceEE
Q 033749           58 PLFMQLLKEAEEEYGFDQKGTITI   81 (112)
Q Consensus        58 P~F~~LL~~AeEEfG~~~~G~L~I   81 (112)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccCCeEEE
Confidence            467777999999999999999986

>PRK02315 adaptor protein; Provisional

Probab=85.03  E-value=0.71  Score=36.54  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCceEE
Q 033749           58 PLFMQLLKEAEEEYGFDQKGTITI   81 (112)
Q Consensus        58 P~F~~LL~~AeEEfG~~~~G~L~I   81 (112)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCcccCCeEEE
Confidence            579999999999999999999987

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.61  E-value=1.5  Score=28.90  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=43.7

Q ss_pred             EEEEccCCcceEEEEeccccC-cH--HHHHHHHHHHHhcCCCCCCceEEcCcHHHHHHHHHHHhcc
Q 033749           36 AIKVGQGEEQQRVVVPVIYFN-HP--LFMQLLKEAEEEYGFDQKGTITIPCHVEEFRYVQGMIDRE   98 (112)
Q Consensus        36 aVYVG~g~e~~RFvVPv~yLn-hP--~F~~LL~~AeEEfG~~~~G~L~IPC~~~~Fe~vl~~l~~~   98 (112)
                      .+-||    .++|.++.+.|. .|  .|..|++.......-..+|.+-|-++...|++||......
T Consensus         2 ~lNVG----G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    2 RLNVG----GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEET----TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEEC----CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            45677    389999999887 43  7888888652222224479999999999999999888773

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	80.76

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=80.76  E-value=5.8  Score=25.01  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             EEEEEccCCcceEEEEecccc--CcHHHHHHHHHHHHhcCCCCCCceEEc-CcHHHHHHHHHHHhccC
Q 033749           35 LAIKVGQGEEQQRVVVPVIYF--NHPLFMQLLKEAEEEYGFDQKGTITIP-CHVEEFRYVQGMIDREN   99 (112)
Q Consensus        35 ~aVYVG~g~e~~RFvVPv~yL--nhP~F~~LL~~AeEEfG~~~~G~L~IP-C~~~~Fe~vl~~l~~~~   99 (112)
                      +.+.||++.+.++|-+.-..|  ..|.|++++...-.|-   . ..|.|| .+.+.|+.++.......
T Consensus        11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~   74 (109)
T 2vkp_A           11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE   74 (109)
T ss_dssp             EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence            456677545668999988888  6899999997644332   2 688897 69999999888776654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00