Citrus Sinensis ID: 033766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATTQSRLCKKR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEcccccccEEcccccccccccccEEEEEccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEccccccccEEEEHccHHccccccEEEEEcccccHHHHcccccccHHHHHHcc
Coil and Loop (DISEMBL)
MMLLGQVADEFLLRRaetewfvegDFDAYVRQmrqphswggepellmsshvlkmpitvymrdktsgslkNLSEYgqeygkenpirvlyhgyghydllrghdattqsrlckkr
Flexible Loop (DISEMBL)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDllrghdattqsrlckkr
Low Complexity Region (SEG)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATTQSRLCKKR
Disordered region (IsUnstruct)
***LGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT***LKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGH************
Disordered Region (DISOPRED)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDAT****LC***
Disordered Region (DISEMBL)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA**********
Disordered Region (DISPRO)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATT********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATTQSRLCKKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.892	0.315	0.7	3e-39
Q6GM06	294	OTU domain-containing pro	N/A	no	0.794	0.302	0.287	0.0001
P38747	307	OTU domain-containing pro	yes	no	0.758	0.276	0.323	0.0002
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.785	0.291	0.330	0.0006

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 85/100 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +VADEF+ RR ETEWFVEGDFD YVRQ+R PH WGGEPEL M+SHVL+MPITVYM+D
Sbjct: 209 LRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKD 268

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA 102
             +G L +++EYGQEYGK++PIRVLYHG+GHYD L  H++
Sbjct: 269 DKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYDALLLHES 308

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 11  FLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKN 70
           FL   +  + + + +F  Y   +    +WGG+ EL   SH+LK PI V   +     +  
Sbjct: 200 FLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQAESLPIVI-- 257

Query: 71  LSEYGQEYGKENPIRVLY--HGYG---HYDLLRGHDATTQS 106
               G+EY  + PI ++Y  H YG   HY+ +   D +T++
Sbjct: 258 ----GEEYSNK-PITLVYMRHAYGLGEHYNSVEQLDTSTEN 293

Xenopus laevis (taxid: 8355)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 14/99 (14%)

Query: 9   DEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSL 68
           D+F+    + E     D D Y ++M     WGGE E+L  SHV   PI++ M      S 
Sbjct: 218 DDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM------SG 271

Query: 69  KNLSEYGQEYGKENPIRVLY--HGYG---HYDLLRGHDA 102
           + +  Y  E GK   ++++Y  H Y    HY+ L  HD+
Sbjct: 272 RPIQVYN-ECGKNPELKLVYYKHSYALGEHYNSL--HDS 307

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%)

Query: 11  FLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKN 70
           FL      + + + +F+ Y   +    +WGG+ EL   SH+L+ PI V   D  S  +  
Sbjct: 206 FLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQMDSPSIIV-- 263

Query: 71  LSEYGQEY-GKENPIRVLY--HGYG---HYDLLR-GHDATTQS 106
               G+EY GK  PI ++Y  H YG   HY+ ++   DATT++
Sbjct: 264 ----GEEYSGK--PIILVYMRHAYGLGEHYNSVKLLTDATTEN 300

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
255547784	167	OTU domain-containing protein 6B, putati	0.937	0.628	0.723	3e-39
147779061	806	hypothetical protein VITISV_002512 [Viti	0.857	0.119	0.729	3e-39
359481937	340	PREDICTED: OTU domain-containing protein	0.857	0.282	0.729	6e-39
225425830	155	PREDICTED: OTU domain-containing protein	0.955	0.690	0.682	1e-37
297817112	313	hypothetical protein ARALYDRAFT_486235 [	0.892	0.319	0.69	1e-37
6729524	304	putative protein [Arabidopsis thaliana]	0.892	0.328	0.7	1e-37
357148394	310	PREDICTED: OTU domain-containing protein	0.857	0.309	0.729	1e-37
30694718	317	Cysteine proteinases-like protein [Arabi	0.892	0.315	0.7	1e-37
222641815	369	hypothetical protein OsJ_29825 [Oryza sa	0.857	0.260	0.729	1e-37
218202361	369	hypothetical protein OsI_31841 [Oryza sa	0.857	0.260	0.729	1e-37

>gi|255547784|ref|XP_002514949.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223546000|gb|EEF47503.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 87/105 (82%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +VADEF+ RR +TEWF+E DFD YV QMRQPH WGGEPELLMSSHVLK+PITVYMRD
Sbjct: 62  LRAKVADEFIKRRRDTEWFLEDDFDTYVGQMRQPHVWGGEPELLMSSHVLKIPITVYMRD 121

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATTQSR 107
           + SGSLK ++EYGQEYGKENPI VLYHGYGHYD L+      +S+
Sbjct: 122 RNSGSLKVIAEYGQEYGKENPICVLYHGYGHYDALQNQTTDIKSK 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +V DEF+ RR+ETEWF+EGDFD YV QMR+PH WGGEPEL M+SHVL+MPITVYM D
Sbjct: 700 LRAEVVDEFIRRRSETEWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYD 759

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
           K SG L  ++EYGQEYGKENPIRVLYHG+GHY+ L+
Sbjct: 760 KDSGGLIAIAEYGQEYGKENPIRVLYHGFGHYESLQ 795

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481937|ref|XP_003632695.1| PREDICTED: OTU domain-containing protein At3g57810-like [Vitis vinifera]

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +V DEF+ RR+ETEWF+EGDFD YV QMR+PH WGGEPEL M+SHVL+MPITVYM D
Sbjct: 234 LRAEVVDEFIRRRSETEWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYD 293

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
           K SG L  ++EYGQEYGKENPIRVLYHG+GHY+ L+
Sbjct: 294 KDSGGLIAIAEYGQEYGKENPIRVLYHGFGHYESLQ 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425830|ref|XP_002266448.1| PREDICTED: OTU domain-containing protein At3g57810 [Vitis vinifera] gi|297738381|emb|CBI27582.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 89/107 (83%)

Query: 6   QVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTS 65
           +V DEF+ RRA+TEWF+EGDFD YV +MRQPH WGGEPELLMSSHVL+MPITVYM +K S
Sbjct: 49  KVVDEFIKRRADTEWFLEGDFDDYVLRMRQPHIWGGEPELLMSSHVLQMPITVYMSEKNS 108

Query: 66  GSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATTQSRLCKKR 112
             LK ++EYGQEYGKE+PI V+YHGYGHYD L+   +T +S+  K+R
Sbjct: 109 NDLKVIAEYGQEYGKEDPICVVYHGYGHYDALQNPASTKKSKSRKQR 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817112|ref|XP_002876439.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata] gi|297322277|gb|EFH52698.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 88/100 (88%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +VADEF+ RR ETEWFVEGDFD+YVRQ+R+PH WGGEPEL ++SHVL+MPITVYM+D
Sbjct: 205 LRTKVADEFIKRRQETEWFVEGDFDSYVRQIREPHVWGGEPELFIASHVLQMPITVYMKD 264

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA 102
           + +G L +++EYGQEYGK++PIRVLYHG+GHYD L  H++
Sbjct: 265 EKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYDALLIHES 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6729524|emb|CAB67609.1| putative protein [Arabidopsis thaliana]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 85/100 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +VADEF+ RR ETEWFVEGDFD YVRQ+R PH WGGEPEL M+SHVL+MPITVYM+D
Sbjct: 196 LRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKD 255

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA 102
             +G L +++EYGQEYGK++PIRVLYHG+GHYD L  H++
Sbjct: 256 DKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYDALLLHES 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357148394|ref|XP_003574746.1| PREDICTED: OTU domain-containing protein At3g57810-like [Brachypodium distachyon]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L   VADEF+ RR ETEWF+EGDFD YV Q+RQPH WGGEPEL M+SHVL+MPITVYMRD
Sbjct: 204 LRSMVADEFVTRREETEWFIEGDFDTYVSQIRQPHVWGGEPELFMASHVLQMPITVYMRD 263

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
           + SG L  ++EYGQEYGKE+PI+VLYHG+GHYD L+
Sbjct: 264 EDSGGLITIAEYGQEYGKEDPIKVLYHGFGHYDSLQ 299

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694718|ref|NP_850716.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|145332883|ref|NP_001078307.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|75155093|sp|Q8LBZ4.1|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gi|21555880|gb|AAM63953.1| unknown [Arabidopsis thaliana] gi|109946583|gb|ABG48470.1| At3g57810 [Arabidopsis thaliana] gi|332646184|gb|AEE79705.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|332646185|gb|AEE79706.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|407078834|gb|AFS88948.1| deubiquitinating enzyme OTU4 isoform ia [Arabidopsis thaliana]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 85/100 (85%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L  +VADEF+ RR ETEWFVEGDFD YVRQ+R PH WGGEPEL M+SHVL+MPITVYM+D
Sbjct: 209 LRTRVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKD 268

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA 102
             +G L +++EYGQEYGK++PIRVLYHG+GHYD L  H++
Sbjct: 269 DKAGGLISIAEYGQEYGKDDPIRVLYHGFGHYDALLLHES 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222641815|gb|EEE69947.1| hypothetical protein OsJ_29825 [Oryza sativa Japonica Group]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 84/96 (87%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L   VADEF+ RRAETEWFVEGDFDAYV ++R+PH WGGEPELLM+SHVL+MPITVYM D
Sbjct: 263 LRAMVADEFIKRRAETEWFVEGDFDAYVSRIRKPHVWGGEPELLMASHVLRMPITVYMHD 322

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
           K +G L  ++EYGQEYGKE+PI+VL+HG+GHYD L+
Sbjct: 323 KEAGGLIAIAEYGQEYGKEDPIQVLFHGFGHYDALQ 358

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218202361|gb|EEC84788.1| hypothetical protein OsI_31841 [Oryza sativa Indica Group]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 84/96 (87%)

Query: 3   LLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRD 62
           L   VADEF+ RRAETEWFVEGDFDAYV ++R+PH WGGEPELLM+SHVL+MPITVYM D
Sbjct: 263 LRAMVADEFIKRRAETEWFVEGDFDAYVSRIRKPHVWGGEPELLMASHVLRMPITVYMHD 322

Query: 63  KTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
           K +G L  ++EYGQEYGKE+PI+VL+HG+GHYD L+
Sbjct: 323 KEAGGLIAIAEYGQEYGKEDPIQVLFHGFGHYDALQ 358

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.866	0.305	0.711	4.9e-37
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.687	0.329	0.347	5.1e-07
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.758	0.276	0.333	2.8e-06
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.723	0.276	0.312	0.00019
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.616	0.157	0.287	0.00036
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.616	0.213	0.311	0.00047
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.723	0.275	0.302	0.00052
UNIPROTKB|Q96G74	571	OTUD5 "OTU domain-containing p	0.767	0.150	0.238	0.00065

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/97 (71%), Positives = 84/97 (86%)

Query:     6 QVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTS 65
             +VADEF+ RR ETEWFVEGDFD YVRQ+R PH WGGEPEL M+SHVL+MPITVYM+D  +
Sbjct:   212 RVADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKA 271

Query:    66 GSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDA 102
             G L +++EYGQEYGK++PIRVLYHG+GHYD L  H++
Sbjct:   272 GGLISIAEYGQEYGKDDPIRVLYHGFGHYDALLLHES 308

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 32/92 (34%), Positives = 47/92 (51%)

Query:    22 VEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSG-------SLKNLSEY 74
             V+     + +++ +   WGGE ELL+ S + K PI VY+ +   G           + EY
Sbjct:   143 VDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVYIPEHEHGRGGGYGPGFIPIQEY 202

Query:    75 GQEY----GK----ENPIRVLYHGYGHYDLLR 98
             G E+    GK    +N +R+LY G  HYDLLR
Sbjct:   203 GSEFRGGWGKGKTNKNVVRLLYSGRNHYDLLR 234

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 114 (45.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 33/99 (33%), Positives = 49/99 (49%)

Query:     9 DEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSL 68
             D+F+    + E     D D Y ++M     WGGE E+L  SHV   PI++ M    SG  
Sbjct:   218 DDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SG-- 271

Query:    69 KNLSEYGQEYGKENPIRVLY--HGYG---HYDLLRGHDA 102
             + +  Y  E GK   ++++Y  H Y    HY+ L  HD+
Sbjct:   272 RPIQVYN-ECGKNPELKLVYYKHSYALGEHYNSL--HDS 307

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 30/96 (31%), Positives = 47/96 (48%)

Query:     8 ADEFL--LRRAET-EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT 64
             AD+F+  L    T + +   +F+ Y   +    +WGG+ EL   S VL++PI V   D  
Sbjct:   191 ADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSP 250

Query:    65 SGSLKNLSEYGQEYGKENPIRVLY--HGYG---HYD 95
               ++      G+EY K   I ++Y  H YG   HY+
Sbjct:   251 CITI------GEEYDKPK-ITLIYMRHAYGLGEHYN 279

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 97 (39.2 bits), Expect = 0.00036, P = 0.00036
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query:    26 FDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPIR 85
             F+ Y+++MR+  +WGG  E+  +S    + IT++  D+    + N   +  E  K   I 
Sbjct:   121 FEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQMDQPRWEIVN--HFPPE--KNKTIH 176

Query:    86 VLYHGYGHYDLLR 98
             + YH   HY+ +R
Sbjct:   177 LSYHNDEHYNSVR 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 94 (38.1 bits), Expect = 0.00047, P = 0.00047
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query:    25 DFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPI 84
             D D Y+ ++     WG + E+L  S V   PI++YM      S   ++E+GQ    E  +
Sbjct:   250 DLDDYINELTTTAMWGSDMEILALSKVFNCPISIYM---AGASTLTINEHGQL--PELKL 304

Query:    85 RVLYHGYG---HYDLLR 98
                 H +G   HY+ LR
Sbjct:   305 GYYKHSFGLGEHYNSLR 321

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 93 (37.8 bits), Expect = 0.00052, P = 0.00052
 Identities = 29/96 (30%), Positives = 47/96 (48%)

Query:     8 ADEFL--LRRAET-EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT 64
             +D+FL  L    T + +   +F  Y   +    +WGG+ EL   SH+L+ PI +   D  
Sbjct:   192 SDDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAP 251

Query:    65 SGSLKNLSEYGQEYGKENPIRVLY--HGYG---HYD 95
                +      G+EY + NP+ ++Y  H YG   HY+
Sbjct:   252 PIIV------GEEYPR-NPLVLVYMRHAYGLGEHYN 280

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96G74 OTUD5 "OTU domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00065, P = 0.00065
 Identities = 21/88 (23%), Positives = 45/88 (51%)

Query:    10 EFLLRRAET-EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSL 68
             ++L++ A+    +V  DF  Y+ + R+ +  G   E+   + +   P+ VY     + ++
Sbjct:   249 DYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAV 308

Query:    69 KNLSEY-GQEYGKENPIRVLYHGYGHYD 95
             + ++ + G    ++ PIRV YH   HY+
Sbjct:   309 EPINTFHGIHQNEDEPIRVSYHRNIHYN 336


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.46    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  134 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.64u 0.10s 11.74t   Elapsed:  00:00:01
  Total cpu time:  11.64u 0.10s 11.74t   Elapsed:  00:00:01
  Start:  Fri May 10 03:18:45 2013   End:  Fri May 10 03:18:46 2013

GO:0006508 "proteolysis" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_31841 Putative uncharacterized protein (366 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	5e-14
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	1e-04

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 62.9 bits (153), Expect = 5e-14
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 1   MMLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYM 60
             L   V +     R + E F+E D + Y + + +  +WGG  E+   +H+L++PI VY 
Sbjct: 25  DELREAVVEYLRENREDFEKFLEEDENEYYKWISKDGAWGGNIEIFALAHILRVPIIVYK 84

Query: 61  --RDKTSGSLKNLSEYGQEYGKENPIRVLYHGY----GHY 94
               + +  +K    Y     K+  IR+ Y G      HY
Sbjct: 85  LQGGRITVYIKIYGTY-LPLNKKPVIRLSYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 25  DFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKENPI 84
            +D YV ++    S G   E+   + +LK P        T+      +  G   G     
Sbjct: 235 LWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTN---TASPSIKCNICGT--GFVGEK 289

Query: 85  RVLYHGY--GHYDLLR 98
               H    GHY+   
Sbjct: 290 DYYAHALATGHYNFGE 305

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.95
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.76
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.73
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.69
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.69
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.88
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.84
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	98.82
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	86.83
TIGR02934	67	nifT_nitrog probable nitrogen fixation protein Fix	80.58

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-28  Score=186.20  Aligned_cols=97  Identities=40%  Similarity=0.706  Sum_probs=85.8

Q ss_pred             ChHHHHHHHHHhhCccccccccc----------cCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCcee
Q 033766            1 MMLLGQVADEFLLRRAETEWFVE----------GDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKN   70 (112)
Q Consensus         1 m~lR~~~~~yi~~~~~~fe~fv~----------~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~   70 (112)
                      +.||.++|+||++|.++|.||+.          ++|++||+.|++++.|||+|||.|||.+|++||.||+.+   ++   
T Consensus       190 ~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~---~p---  263 (302)
T KOG2606|consen  190 QKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD---GP---  263 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC---CC---
Confidence            46999999999999999999996          259999999999999999999999999999999999988   33   


Q ss_pred             eeecCCCCCCCCeEEEEECCC----C-cccccccCCCC
Q 033766           71 LSEYGQEYGKENPIRVLYHGY----G-HYDLLRGHDAT  103 (112)
Q Consensus        71 i~~~g~e~~~~~~i~L~Y~~~----g-HYdsv~~~~~~  103 (112)
                      +..||+++++.+||.|+||++    | ||||+.+..+.
T Consensus       264 ~~~~geey~kd~pL~lvY~rH~y~LGeHYNS~~~~~n~  301 (302)
T KOG2606|consen  264 ILEYGEEYGKDKPLILVYHRHAYGLGEHYNSVTPLKNK  301 (302)
T ss_pred             ceeechhhCCCCCeeeehHHhHHHHHhhhccccccccc
Confidence            335899998779999999765    4 99999877654

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=5.4e-19  Score=132.57  Aligned_cols=94  Identities=23%  Similarity=0.347  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHhhCcccc-ccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCC
Q 033766            2 MLLGQVADEFLLRRAET-EWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGK   80 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~f-e~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~   80 (112)
                      +||+.+++.+.+|++.| ++++..+-.+||+||.++.+|||.|||..||..|++.|.|++..     ...|..||++...
T Consensus       140 elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiq-----t~rid~fged~~~  214 (307)
T KOG3288|consen  140 ELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQ-----TVRIDRFGEDKNF  214 (307)
T ss_pred             HHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecc-----eeeehhcCCCCCC
Confidence            69999999999999999 89999999999999999999999999999999999999999865     3457889988655


Q ss_pred             CCeEEEEECCCCcccccccCC
Q 033766           81 ENPIRVLYHGYGHYDLLRGHD  101 (112)
Q Consensus        81 ~~~i~L~Y~~~gHYdsv~~~~  101 (112)
                      ...+.|+|.+. |||++....
T Consensus       215 ~~rv~llydGI-HYD~l~m~~  234 (307)
T KOG3288|consen  215 DNRVLLLYDGI-HYDPLAMNE  234 (307)
T ss_pred             CceEEEEeccc-ccChhhhcc
Confidence            67899999887 999997543

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.73  E-value=6.1e-18  Score=113.24  Aligned_cols=85  Identities=36%  Similarity=0.579  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHh-hCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCC---C
Q 033766            2 MLLGQVADEFL-LRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQ---E   77 (112)
Q Consensus         2 ~lR~~~~~yi~-~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~---e   77 (112)
                      +||+.|++||+ +|++.|++|+.++      +|+++++|||++||+|+|.+|+++|.|++...  +.......+.+   .
T Consensus        28 ~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~   99 (121)
T PF02338_consen   28 ELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPP   99 (121)
T ss_dssp             HHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETT--TBEEEEEEESCEEST
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhCCeEEEEEcCC--CCccceeeecCcccc
Confidence            79999999999 9999999999877      99999999999999999999999999988742  22221222322   2


Q ss_pred             CCCCCeEEEEECC-----CCcc
Q 033766           78 YGKENPIRVLYHG-----YGHY   94 (112)
Q Consensus        78 ~~~~~~i~L~Y~~-----~gHY   94 (112)
                      ....+++.|+|+.     .+||
T Consensus       100 ~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen  100 LESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             TTTTTSEEEEEETEEEEETTEE
T ss_pred             CCCCCeEEEEEcCCccCCCCCC
Confidence            2345789999986     5698

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.69  E-value=1.1e-16  Score=119.67  Aligned_cols=97  Identities=23%  Similarity=0.334  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHhhCccccccccc----cCHHHHHHH-hcCCCCcCChHHHHHHHHhhCCCEEEEEecCC-CCCceeeeecC
Q 033766            2 MLLGQVADEFLLRRAETEWFVE----GDFDAYVRQ-MRQPHSWGGEPELLMSSHVLKMPITVYMRDKT-SGSLKNLSEYG   75 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~----~~~~~Y~~~-m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~-~~~~~~i~~~g   75 (112)
                      .||..++.||+.|+++|+||++    .++++||+. +...+.-+||+.|.|||++|+++|.|+..+++ .+.....+.+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            5899999999999999999998    579999987 56666889999999999999999999999976 34444444554


Q ss_pred             CCC-CCCCeEEEEECCCCccccccc
Q 033766           76 QEY-GKENPIRVLYHGYGHYDLLRG   99 (112)
Q Consensus        76 ~e~-~~~~~i~L~Y~~~gHYdsv~~   99 (112)
                      ++. ...+.|+|+|.. ||||.+++
T Consensus       221 ~~~~~~~~~i~LLyrp-gHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLYRP-GHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEEET-BEEEEEEE
T ss_pred             CccCCCCCEEEEEEcC-CccccccC
Confidence            322 235779999954 79999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=8e-17  Score=119.20  Aligned_cols=97  Identities=23%  Similarity=0.272  Sum_probs=81.2

Q ss_pred             ChHHHHHHHHHhhCcccccccccc--CHHHHHHHhcCCC-CcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCC
Q 033766            1 MMLLGQVADEFLLRRAETEWFVEG--DFDAYVRQMRQPH-SWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQE   77 (112)
Q Consensus         1 m~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~~m~~~~-~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e   77 (112)
                      |.||..++.+|++|+|+|+||+++  ++++||.+-..|. +-.|||+|.|||+++++.|.|..+++..++...-+.|.+ 
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe-  235 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPE-  235 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCcc-
Confidence            689999999999999999999986  8999999988875 569999999999999999999999988665433222322 


Q ss_pred             CCCCCeEEEEECCCCcccccccC
Q 033766           78 YGKENPIRVLYHGYGHYDLLRGH  100 (112)
Q Consensus        78 ~~~~~~i~L~Y~~~gHYdsv~~~  100 (112)
                       +..+.|.|+|. .||||.++++
T Consensus       236 -~s~P~I~LLYr-pGHYdilY~~  256 (256)
T KOG3991|consen  236 -ASAPEIYLLYR-PGHYDILYKK  256 (256)
T ss_pred             -ccCceEEEEec-CCccccccCC
Confidence             34678999995 5799999864

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=4.1e-10  Score=86.10  Aligned_cols=90  Identities=27%  Similarity=0.251  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHhhCcccccccccc-CHHHHHHHhcCCCCcC-ChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEG-DFDAYVRQMRQPHSWG-GEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYG   79 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~-~~~~Y~~~m~~~~~WG-g~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~   79 (112)
                      +||.+|+..+.+|+|.|.+.+.+ +.-.||+|++++..|| |++|+.++|..+++.|.|+.++..     .+..|++..-
T Consensus       139 ~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~~  213 (306)
T COG5539         139 KLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKD-----SEDRYNSHPY  213 (306)
T ss_pred             HHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchh-----HHhhccCChh
Confidence            58999999999999999888875 9999999999999999 999999999999999999988832     2455776532


Q ss_pred             CCCeEEEEECCCCcccccc
Q 033766           80 KENPIRVLYHGYGHYDLLR   98 (112)
Q Consensus        80 ~~~~i~L~Y~~~gHYdsv~   98 (112)
                       ...+.+.|.++ |||...
T Consensus       214 -~q~~~i~f~g~-hfD~~t  230 (306)
T COG5539         214 -VQRISILFTGI-HFDEET  230 (306)
T ss_pred             -hhhhhhhhccc-ccchhh
Confidence             25578889775 999876

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.7e-09  Score=82.68  Aligned_cols=90  Identities=18%  Similarity=0.028  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHhhCcccccccccc-------CHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeec
Q 033766            2 MLLGQVADEFLLRRAETEWFVEG-------DFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEY   74 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~-------~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~   74 (112)
                      ++|..-..|..++.+.|.+|.-+       +|++||..|+-+..||+.+|++|||..|++|+.++...    ++. | .+
T Consensus       205 ~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~~-i-k~  278 (306)
T COG5539         205 EDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTA----SPS-I-KC  278 (306)
T ss_pred             HhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecC----Cce-E-Ee
Confidence            45555667778888999888752       79999999999999999999999999999999998755    333 2 34


Q ss_pred             CCCCCCCCeEEEEE--CCC--Ccccccc
Q 033766           75 GQEYGKENPIRVLY--HGY--GHYDLLR   98 (112)
Q Consensus        75 g~e~~~~~~i~L~Y--~~~--gHYdsv~   98 (112)
                      ++ .+......+.|  |..  ||||++.
T Consensus       279 n~-c~~~~~~e~~~~~Ha~a~GH~n~~~  305 (306)
T COG5539         279 NI-CGTGFVGEKDYYAHALATGHYNFGE  305 (306)
T ss_pred             ec-cccccchhhHHHHHHHhhcCccccC
Confidence            42 12223344555  333  6999974

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=3.7e-09  Score=83.81  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHH---HhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSS---HVLKMPITVYMRDKTSGSLKNLSEYGQEY   78 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als---~~~~~~I~V~~~~~~~~~~~~i~~~g~e~   78 (112)
                      ..|+++++++..+++.|+.|+.+++-+|+++++.++.||+|+|+||+|   .....++.|.+...  ..+..+.+-.++ 
T Consensus       247 ~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~-  323 (371)
T KOG2605|consen  247 HNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKD--TCYIQTPPAIEE-  323 (371)
T ss_pred             HHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccc--cceeccCccccc-
Confidence            479999999999999999999999999999999999999999999999   45566666655441  122222111111 


Q ss_pred             CCCCeEEEEECCCCcccccccC
Q 033766           79 GKENPIRVLYHGYGHYDLLRGH  100 (112)
Q Consensus        79 ~~~~~i~L~Y~~~gHYdsv~~~  100 (112)
                       ....+++.+..--||+..+..
T Consensus       324 -~~~~~~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  324 -SVKMEKYNFWVEVHYNTARHS  344 (371)
T ss_pred             -chhhhhhcccchhhhhhcccc
Confidence             112233333222399999875

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.83  E-value=1.7  Score=28.36  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             CHHHHHHHhcCC--CCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766           25 DFDAYVRQMRQP--HSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY   78 (112)
Q Consensus        25 ~~~~Y~~~m~~~--~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~   78 (112)
                      +++.||.|.++.  .+|-|   ...+|+.+++.|.|--...   .+..+..+++..
T Consensus        35 ~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vkV~~~---~~~~l~~~~d~~   84 (104)
T PF05415_consen   35 TIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVKVLSD---KPYDLLYFVDGA   84 (104)
T ss_pred             HHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEEEcCC---CCceeeEeecCc
Confidence            589999998765  58954   5689999999999844332   233345566543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT

Probab=80.58  E-value=0.13  Score=31.69  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=26.0

Q ss_pred             hhCccc-cccccc-cCHHHHHHHhcCCCCcCChHH
Q 033766           12 LLRRAE-TEWFVE-GDFDAYVRQMRQPHSWGGEPE   44 (112)
Q Consensus        12 ~~~~~~-fe~fv~-~~~~~Y~~~m~~~~~WGg~iE   44 (112)
                      +++.+- +..||. .|+|+=+-.+.+++.|||.+.
T Consensus         6 R~~~~g~l~~YvpKKDLEE~Vv~~e~~~~WGG~v~   40 (67)
T TIGR02934         6 RRNRAGELSAYVPKKDLEEVIVSVEKEELWGGWVT   40 (67)
T ss_pred             EeCCCCCEEEEEECCcchhheeeeecCccccCEEE
Confidence            455554 778887 489999999999999999643

This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-22
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-22
3pfy_A	185	OTU domain-containing protein 5; structural genomi	9e-18
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	6e-17
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	4e-06
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	6e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 85.5 bits (211), Expect = 2e-22
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 10  EFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLK 69
               +       V    + Y+++M   + WG   E  M +  + + I ++    +     
Sbjct: 72  RKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDE--- 128

Query: 70  NLSEYGQEYGKE---NPIRVLYHGYGHYDLLR 98
              E G ++G       + +L+ G  H+D LR
Sbjct: 129 --VEAGIKFGDGDVFTAVNLLHSGQTHFDALR 158

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 86.0 bits (212), Expect = 3e-22
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 6   QVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTS 65
           + A     +       V    + Y+++M   + WG   E  M +  + + I ++    + 
Sbjct: 68  ESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASD 127

Query: 66  GSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
                      +      + +L+ G  H+D LR
Sbjct: 128 EVEAG--IKFGDGDVFTAVNLLHSGQTHFDALR 158

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 73.6 bits (180), Expect = 9e-18
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 6   QVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTS 65
              D  +        +V  DF  Y+ + R+ +  G   E+   + +   P+ VY      
Sbjct: 92  HCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 151

Query: 66  GSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLR 98
            +      +G    ++ PIRV YH   HY+ + 
Sbjct: 152 INT----FHGIHQNEDEPIRVSYHRNIHYNSVV 180

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 71.9 bits (176), Expect = 6e-17
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6   QVADEFLLRRAE-TEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT 64
            V+ E L    +  +  ++     Y + + +  SWGG  E+ + S  L + I V   D  
Sbjct: 52  MVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA- 110

Query: 65  SGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLLRGHDATT 104
                 + ++ ++    N I +L++G  HYD L  ++  T
Sbjct: 111 ----VKIEKFNEDKFD-NYILILFNG-IHYDSLTMNEFKT 144

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 2   MLLGQVADEFLLRRAET-EWFVEGD--FDAY-VRQMRQPHSWGGEPELLMSSHVLKMPIT 57
           + L  +   +L R ++  E F+EG      +  +++           ++  +  L + I 
Sbjct: 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQ 195

Query: 58  VYMRDKTSGSLKNLSEYGQEYGKENPIRVLYHGYGHYDLL 97
           V   D+  G   N   + +  G E  + +LY   GHYD+L
Sbjct: 196 VEYMDRGEGGTTNPHIFPE--GSEPKVYLLYRP-GHYDIL 232

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 21  FVEG--DFDAYVRQMRQPH-SWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQE 77
           F++   D   +     +P  +     ++   S  L + + V   D+   +L     +   
Sbjct: 153 FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALN---HHVFP 209

Query: 78  YGKENPIRVLYHGYGHYDLL 97
                 + +LY    HY++L
Sbjct: 210 EAATPSVYLLYKT-SHYNIL 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.97
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.96
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.95
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.94
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.92
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.92
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.91
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.85
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	94.52
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	88.65

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.97  E-value=2.3e-31  Score=191.67  Aligned_cols=97  Identities=22%  Similarity=0.354  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE   81 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~   81 (112)
                      +||+.||+||++|+++|+|||+++|++||++|+++++|||++||+|||++|+++|.|++.+   +.++.+. .|.+....
T Consensus        88 ~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~---~~~i~i~-~g~~~~~~  163 (185)
T 3pfy_A           88 VVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYS---TEPINTF-HGIHQNED  163 (185)
T ss_dssp             HHHHHHHHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSC---SSCSEEE-CTTSCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECC---CCCeEEe-cCccCCCC
Confidence            6999999999999999999999999999999999999999999999999999999999976   2333331 24444456


Q ss_pred             CeEEEEECCCCcccccccCCC
Q 033766           82 NPIRVLYHGYGHYDLLRGHDA  102 (112)
Q Consensus        82 ~~i~L~Y~~~gHYdsv~~~~~  102 (112)
                      ++|+|+||+.+|||||+++..
T Consensus       164 ~~I~L~Y~~~~HYnSv~~p~~  184 (185)
T 3pfy_A          164 EPIRVSYHRNIHYNSVVNPNK  184 (185)
T ss_dssp             SCEEEEEETTTEEEEEECC--
T ss_pred             CEEEEEECCCCCcccccCCCC
Confidence            899999998889999998753

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.96  E-value=7.3e-29  Score=181.76  Aligned_cols=91  Identities=25%  Similarity=0.343  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHhhCccccc-cccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCC
Q 033766            2 MLLGQVADEFLLRRAETE-WFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGK   80 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe-~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~   80 (112)
                      +||+.||+||++|+++|. +|++++|++||++|+++++|||++||+|||++|+++|.|++.+  ++ +  +..||++. .
T Consensus        48 ~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~--~~-~--~~~~~~~~-~  121 (212)
T 3by4_A           48 DLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID--AV-K--IEKFNEDK-F  121 (212)
T ss_dssp             HHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETT--TT-E--EEEESTTT-C
T ss_pred             HHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECC--CC-C--eEEeCCCC-C
Confidence            699999999999999995 7778899999999999999999999999999999999999976  22 2  34588775 4


Q ss_pred             CCeEEEEECCCCccccccc
Q 033766           81 ENPIRVLYHGYGHYDLLRG   99 (112)
Q Consensus        81 ~~~i~L~Y~~~gHYdsv~~   99 (112)
                      .++|+|+|++ +|||||+.
T Consensus       122 ~~~I~L~Y~g-~HYdsl~~  139 (212)
T 3by4_A          122 DNYILILFNG-IHYDSLTM  139 (212)
T ss_dssp             SEEEEEEECS-SCEEEEEE
T ss_pred             CCeEEEEEcC-CcceEEec
Confidence            6789999985 59999987

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.95  E-value=8.1e-28  Score=173.11  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE   81 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~   81 (112)
                      +||+.|++||++|++.  .+++++|++||++|+++++|||++||+|||++|+++|.|++.+.++ ++..+..||++.. .
T Consensus        66 ~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~~-~  141 (185)
T 3phx_A           66 LTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV-F  141 (185)
T ss_dssp             HHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCCT-T
T ss_pred             HHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCCC-C
Confidence            6999999999999998  4678899999999999999999999999999999999999987542 2344557887653 6


Q ss_pred             CeEEEEECCCCcccccccCCCCch
Q 033766           82 NPIRVLYHGYGHYDLLRGHDATTQ  105 (112)
Q Consensus        82 ~~i~L~Y~~~gHYdsv~~~~~~~~  105 (112)
                      ++|+|+|++.+|||||++..++.+
T Consensus       142 ~~I~L~Y~g~~HYdsl~~~~~~~~  165 (185)
T 3phx_A          142 TAVNLLHSGQTHFDALRILPQFET  165 (185)
T ss_dssp             TSEEEEEETTTEEEEEEECGGGC-
T ss_pred             CEEEEEECCCcCchhceECCCCCC
Confidence            889999998679999998875544

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.94  E-value=2.9e-27  Score=174.09  Aligned_cols=99  Identities=15%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHhhCccccccccccCHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEGDFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEYGKE   81 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~~~~   81 (112)
                      +||+.|++||++|++.  .+++++|++||++|+++++|||++||+|||++|+++|+|++.+.+ +++..+..||++.. .
T Consensus        66 ~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~  141 (219)
T 3phu_A           66 LTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-F  141 (219)
T ss_dssp             HHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-T
T ss_pred             HHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-C
Confidence            6999999999999998  467889999999999999999999999999999999999998844 22444567887753 6


Q ss_pred             CeEEEEECCCCcccccccCCCCc
Q 033766           82 NPIRVLYHGYGHYDLLRGHDATT  104 (112)
Q Consensus        82 ~~i~L~Y~~~gHYdsv~~~~~~~  104 (112)
                      ++|+|+|++.+|||||++..+..
T Consensus       142 ~~I~L~Y~g~~HYdSL~~~~d~~  164 (219)
T 3phu_A          142 TAVNLLHSGQTHFDALRILPQFE  164 (219)
T ss_dssp             TSEEEEEETTTEEEEEEECTTTC
T ss_pred             CeEEEEECCCcCchhheECCCCC
Confidence            88999999867999999887543

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.92  E-value=2.2e-25  Score=165.31  Aligned_cols=95  Identities=20%  Similarity=0.300  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY   78 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~   78 (112)
                      .||..+++||++|+++|+||+++  ++++||+ .++.+++||||+||+|||++|+++|.|++.+++.+..+....|+++ 
T Consensus       137 ~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~-  215 (234)
T 2zfy_A          137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG-  215 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT-
T ss_pred             HHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC-
Confidence            69999999999999999999986  8999998 5888999999999999999999999999998664333444556553 


Q ss_pred             CCCCeEEEEECCCCccccccc
Q 033766           79 GKENPIRVLYHGYGHYDLLRG   99 (112)
Q Consensus        79 ~~~~~i~L~Y~~~gHYdsv~~   99 (112)
                       ..++|+|+|++ ||||+|++
T Consensus       216 -~~p~I~LlY~p-gHYdiLy~  234 (234)
T 2zfy_A          216 -SEPKVYLLYRP-GHYDILYK  234 (234)
T ss_dssp             -CCCSEEEEEET-TEEEEEEC
T ss_pred             -CCCeEEEEECC-CCcccCCC
Confidence             35789999975 79999985

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.92  E-value=2.5e-25  Score=165.10  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY   78 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~   78 (112)
                      .||..++.||++|+++|+||+++  +|++||+ .++.+++||||+||+|||++|+++|.|++.+++.+ .+..+.|.++ 
T Consensus       134 ~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~-~~~~~~~~~~-  211 (234)
T 1tff_A          134 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDT-ALNHHVFPEA-  211 (234)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCC-
T ss_pred             HHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCC-ccccccCCCC-
Confidence            68999999999999999999986  8999999 68899999999999999999999999999985531 1222334432 


Q ss_pred             CCCCeEEEEECCCCcccccccCC
Q 033766           79 GKENPIRVLYHGYGHYDLLRGHD  101 (112)
Q Consensus        79 ~~~~~i~L~Y~~~gHYdsv~~~~  101 (112)
                       ..+.|+|+|++ ||||+|++.+
T Consensus       212 -~~~~I~LlY~p-gHYdily~~~  232 (234)
T 1tff_A          212 -ATPSVYLLYKT-SHYNILYAAD  232 (234)
T ss_dssp             -SSCSEEEEEET-TEEEEEEECC
T ss_pred             -CCCeEEEEECC-CCceecccCC
Confidence             35779999975 6999999875

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.91  E-value=6.2e-25  Score=166.67  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=83.4

Q ss_pred             ChHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeee-cCC
Q 033766            1 MMLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSE-YGQ   76 (112)
Q Consensus         1 m~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~-~g~   76 (112)
                      +.||..++.||++|+++|+||+++  ++++||+ .|+..++||||+||+|||++|+++|.|.+++++.|..+..+. |.+
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~  250 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS  250 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC
Confidence            369999999999999999999985  8999999 799999999999999999999999999999876554333334 522


Q ss_pred             CC-CCCCeEEEEECCCCcccccccCCCCchhhh
Q 033766           77 EY-GKENPIRVLYHGYGHYDLLRGHDATTQSRL  108 (112)
Q Consensus        77 e~-~~~~~i~L~Y~~~gHYdsv~~~~~~~~~~~  108 (112)
                      +. ...+.|+|+|.+ ||||.|+++..+..|+.
T Consensus       251 ~~~~~~p~I~LLYrp-gHYDILY~~~p~~~~~~  282 (284)
T 4dhi_B          251 DDQQIAPEITLLYRP-GHYDVIYKKDSTEASEI  282 (284)
T ss_dssp             CCSCCCCSEEEEEET-TEEEEEEECC-------
T ss_pred             CCCCCCCEEEEeecC-CCccccccCCCCchhhc
Confidence            21 123669999976 79999999987777764

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.85  E-value=1.9e-21  Score=153.39  Aligned_cols=96  Identities=20%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             ChHHHHHHHHHhhCcccccccccc--CHHHHHH-HhcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCC
Q 033766            1 MMLLGQVADEFLLRRAETEWFVEG--DFDAYVR-QMRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQE   77 (112)
Q Consensus         1 m~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~-~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e   77 (112)
                      +.||..++.||+.|+++|+||+++  ++++||+ .|...++||||+||+|||++|+++|.|++.+++.+..+..+.+.++
T Consensus       301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~  380 (399)
T 4ddg_A          301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG  380 (399)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTT
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCC
Confidence            369999999999999999999986  7999999 7999999999999999999999999999988754433333445332


Q ss_pred             CCCCCeEEEEECCCCccccccc
Q 033766           78 YGKENPIRVLYHGYGHYDLLRG   99 (112)
Q Consensus        78 ~~~~~~i~L~Y~~~gHYdsv~~   99 (112)
                        ..+.|+|+|. .||||.|++
T Consensus       381 --~~~~I~LLYr-PgHYDiLY~  399 (399)
T 4ddg_A          381 --SEPKVYLLYR-PGHYDILYK  399 (399)
T ss_dssp             --CCCCCEEEEE-TBEEEEEEC
T ss_pred             --CCCEEEEEEc-CCccccCCC
Confidence              3577999995 579999985

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=94.52  E-value=0.092  Score=41.02  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhhCCCEEEEEec--CC--CCCceeeeecCC---------CCCCCCeEEEEECCCCcccccccCCC
Q 033766           42 EPELLMSSHVLKMPITVYMRD--KT--SGSLKNLSEYGQ---------EYGKENPIRVLYHGYGHYDLLRGHDA  102 (112)
Q Consensus        42 ~iEl~Als~~~~~~I~V~~~~--~~--~~~~~~i~~~g~---------e~~~~~~i~L~Y~~~gHYdsv~~~~~  102 (112)
                      ++.+-+||.++++||+|+...  ++  .|...--..|+.         +.=...||.|+|.+ |||.+|.....
T Consensus       213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~  285 (390)
T 3dkb_A          213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKD  285 (390)
T ss_dssp             HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCS
T ss_pred             HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-Cceeeeeeccc
Confidence            788999999999999999632  11  121110012221         11124689999987 69999998754

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=88.65  E-value=1.7  Score=34.60  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=50.3

Q ss_pred             CHHHHHHHhcCCCCcCChHHHHHHHHhhCCCEEEEEecCC---CCC-ceeeeecCC---------CCCCCCeEEEEECCC
Q 033766           25 DFDAYVRQMRQPHSWGGEPELLMSSHVLKMPITVYMRDKT---SGS-LKNLSEYGQ---------EYGKENPIRVLYHGY   91 (112)
Q Consensus        25 ~~~~Y~~~m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~---~~~-~~~i~~~g~---------e~~~~~~i~L~Y~~~   91 (112)
                      .|+.-+.....||+==-++.+-+||+++++||+|+...--   .|. +-.+ .|+.         +.=...||.|+|.+ 
T Consensus       263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi-~f~GIYLPLlwpp~~C~rsPIvLgY~~-  340 (454)
T 3zrh_A          263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYT-RFQGVYLPLLWEQSFCWKSPIALGYTR-  340 (454)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCC-CCCEEECCTTSCGGGSCSCCEEEEEET-
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCc-ccceeeccCcCCHHHhcCCceEEEecc-
Confidence            5777777777787656689999999999999999974211   010 0001 1221         11024689999987 


Q ss_pred             CcccccccCCC
Q 033766           92 GHYDLLRGHDA  102 (112)
Q Consensus        92 gHYdsv~~~~~  102 (112)
                      |||.++.....
T Consensus       341 gHFsaLV~~~~  351 (454)
T 3zrh_A          341 GHFSALVAMEN  351 (454)
T ss_dssp             TEEEEEEEBCC
T ss_pred             cceeeeeeccc
Confidence            59999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1xbwa_	109	d.58.4.5 (A:) Hypothetical protein IsdG {Staphyloc	0.002

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.87

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.9e-23  Score=148.81  Aligned_cols=96  Identities=16%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhhCcccccccccc--CHHHHHHH-hcCCCCcCChHHHHHHHHhhCCCEEEEEecCCCCCceeeeecCCCC
Q 033766            2 MLLGQVADEFLLRRAETEWFVEG--DFDAYVRQ-MRQPHSWGGEPELLMSSHVLKMPITVYMRDKTSGSLKNLSEYGQEY   78 (112)
Q Consensus         2 ~lR~~~~~yi~~~~~~fe~fv~~--~~~~Y~~~-m~~~~~WGg~iEl~Als~~~~~~I~V~~~~~~~~~~~~i~~~g~e~   78 (112)
                      .||.+++.||++|++.|+||+++  ++++||.+ |..+++|||++||+|||++|+++|.|++.+.+.+. .....++++ 
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~-~~~~~~~~~-  205 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTA-LNHHVFPEA-  205 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCC-
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCc-cccccCCCC-
Confidence            58999999999999999999975  79999987 88899999999999999999999999999865432 222233332 


Q ss_pred             CCCCeEEEEECCCCcccccccCC
Q 033766           79 GKENPIRVLYHGYGHYDLLRGHD  101 (112)
Q Consensus        79 ~~~~~i~L~Y~~~gHYdsv~~~~  101 (112)
                       ..++|+|+|.+ ||||+|++..
T Consensus       206 -~~~~I~Lly~p-gHYdiLY~~~  226 (228)
T d1tffa_         206 -ATPSVYLLYKT-SHYNILYAAD  226 (228)
T ss_dssp             -SSCSEEEEEET-TEEEEEEECC
T ss_pred             -CCCEEEEEeCC-CCcccCccCC
Confidence             35789999965 7999999875