Citrus Sinensis ID: 033767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MDVVSQLQKQFIDFSSSlyregyvddqfsqlhklqdesspDFVVEVASLFFDDAEKLINSMARALeqpcvdfkqvdshvhqlkgssssigalRVKNVCIAFRSFCDAQNREG
Flexible Loop (DISEMBL)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQlkgssssigalrvKNVCIAFRSFCDAQNREG
Low Complexity Region (SEG)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG
Disordered region (IsUnstruct)
*********QFIDFSSSLYREGYVDDQFSQLH*******PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD******
Disordered Region (DISOPRED)
*******QKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFR**********
Disordered Region (DISEMBL)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG
Disordered Region (DISPRO)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8L9T7	157	Histidine-containing phos	yes	no	0.982	0.700	0.693	1e-38
Q9SAZ5	155	Histidine-containing phos	no	no	0.982	0.709	0.621	1e-34
Q9ZNV8	156	Histidine-containing phos	no	no	0.982	0.705	0.594	5e-33
Q9ZNV9	154	Histidine-containing phos	no	no	0.991	0.720	0.589	1e-27
Q6VAK4	149	Histidine-containing phos	no	no	0.946	0.711	0.523	3e-26
Q9LU15	127	Histidine-containing phos	no	no	0.821	0.724	0.510	1e-23
Q9SSC9	154	Histidine-containing phos	no	no	0.973	0.707	0.463	2e-13
O94321	295	Multistep phosphorelay re	yes	no	0.741	0.281	0.305	4e-05

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 94/111 (84%), Gaps = 1/111 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+
Sbjct: 5   VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64

Query: 63  RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
            +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREG
Sbjct: 65  ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 90/111 (81%), Gaps = 1/111 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MA
Sbjct: 4   LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMA 63

Query: 63  RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           RAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EG
Sbjct: 64  RALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 91/111 (81%), Gaps = 1/111 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MA
Sbjct: 4   LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMA 63

Query: 63  RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           RAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EG
Sbjct: 64  RALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct: 1   MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E 
Sbjct: 60  LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 78/107 (72%), Gaps = 1/107 (0%)

Query: 7   LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
           L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65

Query: 66  EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           EQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+G
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 21  EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
           +GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+   DF ++DS++H
Sbjct: 9   QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68

Query: 81  QLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           Q KGSS+SIGA +VK  C  FR +C A N EG
Sbjct: 69  QFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEK-LINSMA 62
           V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EK L N   
Sbjct: 6   VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query: 63  RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
             +++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR G
Sbjct: 66  LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 28  FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
           F QL ++ D+   +F   +   +F+ AE  I  + +ALE    D K++ S  H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALE--AKDLKKLSSLGHFLKGSSA 228

Query: 88  SIGALRVKNVCIAFRSFCDAQNREG 112
            +G  +++ VC   +++   ++R+G
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDG 253

Binds to the msc4 response regulator which is part of a multistep phosphorelay system that transmits oxidative stress signals to the spc1 MAPK cascade.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224140391	152	histidine phosphotransfer protein [Popul	1.0	0.736	0.794	1e-46
52673260	152	putative histidine-containing phosphotra	1.0	0.736	0.785	3e-46
52673258	152	putative histidine-containing phosphotra	1.0	0.736	0.776	6e-46
224090945	152	histidine phosphotransfer protein [Popul	1.0	0.736	0.767	1e-45
255567590	152	Histidine-containing phosphotransfer pro	1.0	0.736	0.758	2e-45
52673254	152	putative histidine-containing phosphotra	1.0	0.736	0.758	3e-45
298103704	152	putative histidine phosphotransfer prote	1.0	0.736	0.732	5e-43
359479780	151	PREDICTED: histidine-containing phosphot	0.973	0.721	0.715	3e-41
225451088	150	PREDICTED: histidine-containing phosphot	1.0	0.746	0.660	6e-40
388511671	152	unknown [Lotus japonicus]	1.0	0.736	0.651	8e-39

>gi|224140391|ref|XP_002323566.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222868196|gb|EEF05327.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 102/112 (91%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDVVSQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+N+
Sbjct: 1   MDVVSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVMEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREG
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREG 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673260|emb|CAH56502.1| putative histidine-containing phosphotransfer protein 3b [Populus x canadensis]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 102/112 (91%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDV+SQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+N+
Sbjct: 1   MDVLSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVMEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREG
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673258|emb|CAH56501.1| putative histidine-containing phosphotransfer protein 3a [Populus x canadensis]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 102/112 (91%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDVVSQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+++
Sbjct: 1   MDVVSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVIEVVSLFFEDCEKLVSN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVC+AF++FC+AQNREG
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCVAFKTFCEAQNREG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090945|ref|XP_002309127.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222855103|gb|EEE92650.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 103/112 (91%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QLQ+Q+ DF++ LY EG+VDDQF+QL KLQDESSPDFVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLQRQYTDFTTLLYHEGFVDDQFTQLQKLQDESSPDFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREG
Sbjct: 61  MAKALEQQDVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREG 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567590|ref|XP_002524774.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223535958|gb|EEF37617.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 102/112 (91%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD++SQ Q+   DF++SLYREGYVDDQF+QL KLQDESSPDFV+EVASLFF+D EKL+N+
Sbjct: 1   MDLISQWQRSIADFTASLYREGYVDDQFTQLQKLQDESSPDFVMEVASLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MARALE   VDFKQVDSHVHQLKGSSSS+GA R+KNVCIAFR++C++Q+REG
Sbjct: 61  MARALEPRAVDFKQVDSHVHQLKGSSSSMGAARIKNVCIAFRTYCESQDREG 112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673254|emb|CAH56499.1| putative histidine-containing phosphotransfer protein 1 [Populus x canadensis]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 104/112 (92%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QLQ+Q+ DF++ LY+EG+VDDQF+QL KLQDESSPDFVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLQRQYTDFTTLLYQEGFVDDQFTQLQKLQDESSPDFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFK+VDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREG
Sbjct: 61  MAKALEQQDVDFKRVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103704|emb|CBM42553.1| putative histidine phosphotransfer protein 5 [Populus x canadensis]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 101/112 (90%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QL++Q  DFS+ LYREG+VDDQF+QL KLQDESSP FVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLRRQIADFSAFLYREGFVDDQFTQLQKLQDESSPGFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R++NVCIAF+++C+ QNR+G
Sbjct: 61  MAKALEQQIVDFKQVDSHVHQLKGSSSSIGAARIQNVCIAFKTYCEGQNRDG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479780|ref|XP_002272153.2| PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera] gi|296086667|emb|CBI32302.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 97/109 (88%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V QLQ+QF D+++SL+REG++DDQF+QL KLQDE++PDFV EV SLFFDD+EKL+N+MA+
Sbjct: 3   VGQLQRQFTDYTASLFREGFLDDQFTQLQKLQDENNPDFVFEVVSLFFDDSEKLVNNMAK 62

Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           ALEQ  V+FKQVD+HVHQ KGSSSSIGA RVKNVC+ FR+FC+ QN EG
Sbjct: 63  ALEQQTVEFKQVDAHVHQFKGSSSSIGAHRVKNVCVTFRNFCEQQNIEG 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451088|ref|XP_002265307.1| PREDICTED: histidine-containing phosphotransfer protein 1 [Vitis vinifera] gi|298205016|emb|CBI34323.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 99/112 (88%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD V QLQ+Q +D+++ L++EG+++DQF+QL +LQDE++PDFVVEV SLFF+D+E+L+N 
Sbjct: 1   MDGVVQLQRQLLDYTTQLFQEGFLNDQFTQLQQLQDETNPDFVVEVVSLFFEDSERLLNE 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           +A  L+Q  +DF++VDSHVHQLKGSSSSIGA RV+NVCIAFR+FCDAQN EG
Sbjct: 61  LANTLDQQSIDFRKVDSHVHQLKGSSSSIGAQRVQNVCIAFRNFCDAQNTEG 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511671|gb|AFK43897.1| unknown [Lotus japonicus]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 96/112 (85%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD V QLQ++  +  ++++REG++DDQFSQL KLQDE+SPDFV+EV ++FFDD+E L+NS
Sbjct: 1   MDHVIQLQRKLREHETAMFREGFLDDQFSQLQKLQDETSPDFVIEVVTMFFDDSENLLNS 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           MARALEQ  VDFKQ+D+HVHQ KGSS+S+GA RVKN+C+ FR+FC+ QN EG
Sbjct: 61  MARALEQVPVDFKQIDAHVHQYKGSSASVGAARVKNLCVPFRNFCETQNLEG 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.982	0.700	0.693	8e-37
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	1.0	0.722	0.622	2e-33
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	1.0	0.717	0.596	3.7e-32
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.982	0.714	0.594	9.8e-32
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.973	0.707	0.463	1.6e-22
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.482	0.323	0.607	9.1e-13
POMBASE|SPBC725.02	295	mpr1 "histidine-containing res	0.883	0.335	0.281	3.4e-07
ASPGD|ASPL0000046660	172	ypdA [Emericella nidulans (tax	0.741	0.482	0.317	3.8e-07
UNIPROTKB|G4MTL0	135	MGG_07173 "Uncharacterized pro	0.785	0.651	0.315	7.8e-07
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.625	0.593	0.281	8.1e-05

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/111 (69%), Positives = 94/111 (84%)

Query:     3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
             VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+
Sbjct:     5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64

Query:    63 RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
              +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREG
Sbjct:    65 ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 71/114 (62%), Positives = 92/114 (80%)

Query:     1 MD-VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLIN 59
             MD +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI+
Sbjct:     1 MDTLIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLIS 60

Query:    60 SMARALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
             +MARAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EG
Sbjct:    61 NMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 68/114 (59%), Positives = 93/114 (81%)

Query:     1 MD-VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLIN 59
             MD +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI+
Sbjct:     1 MDALIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLIS 60

Query:    60 SMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
             +MARAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EG
Sbjct:    61 NMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 66/111 (59%), Positives = 87/111 (78%)

Query:     1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
             MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct:     1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query:    61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNRE 111
             ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E
Sbjct:    60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVE 110

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/110 (46%), Positives = 79/110 (71%)

Query:     4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
             V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++  
Sbjct:     6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query:    64 AL-EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
              L ++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR G
Sbjct:    66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query:    22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC--VDFKQV 75
             G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MARAL++    VDF Q+
Sbjct:    24 GFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQM 79

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 122 (48.0 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 29/103 (28%), Positives = 55/103 (53%)

Query:    12 IDFSSSLYREGYVDDQ--FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC 69
             + F   L ++  + D   F QL ++ D+   +F   +   +F+ AE  I  + +ALE   
Sbjct:   153 MSFEDELIQDKQLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK- 211

Query:    70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
              D K++ S  H LKGSS+ +G  +++ VC   +++   ++R+G
Sbjct:   212 -DLKKLSSLGHFLKGSSAVLGLTKMRKVCERIQNYGSLRSRDG 253

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IMP

ASPGD|ASPL0000046660 ypdA [Emericella nidulans (taxid:162425)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%)

Query:    28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
             F Q+ ++ DE   +F   +   FFD AE   + M +ALE       ++ S  H LKGSS+
Sbjct:    35 FEQILEMDDEDEHEFSQGIVYGFFDQAESTFDKMEKALEDK--KLSELSSLGHFLKGSSA 92

Query:    88 SIGALRVKNVCIAFRSFCDAQNREG 112
             +IG  +VK+ C   + +   ++  G
Sbjct:    93 TIGLTKVKDACEKIQHYGAGKDESG 117

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query:    23 YVDDQ-FSQLHKL-QDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
             +VD   F Q+ ++ +DE+  DF   +   FF+ AE+    M +AL+    D K++ S  H
Sbjct:     7 HVDSTTFEQILEMDEDEAERDFSKPLVMGFFEQAEETFEKMDKALKDR--DLKELSSLGH 64

Query:    81 QLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
              LKGSS+++G  +VK+ C   + + +    +G
Sbjct:    65 FLKGSSATLGFTKVKDSCQVIQQYGNKLKLDG 96

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 20/71 (28%), Positives = 40/71 (56%)

Query:    28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
             +S L  LQ+    ++   +  +F  D+E+ +  +  A+E   +D +++    H  KGSSS
Sbjct:     7 YSVLSALQEVMEDEYPT-LLDVFLKDSEQRLAQLRLAVETGNLDLQELSLTAHSFKGSSS 65

Query:    88 SIGALRVKNVC 98
             ++GAL++  +C
Sbjct:    66 NMGALQLSQLC 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.42    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  509 (54 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.73u 0.15s 12.88t   Elapsed:  00:00:00
  Total cpu time:  12.73u 0.15s 12.88t   Elapsed:  00:00:00
  Start:  Fri May 10 03:20:12 2013   End:  Fri May 10 03:20:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9T7	AHP5_ARATH	No assigned EC number	0.6936	0.9821	0.7006	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XVI1041	histidine phosphotransfer protein (153 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00140701	response regulator (144 aa)							•		0.681
	PtpRR3	response regulator (687 aa)							•		0.679

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	3e-12
pfam01627	87	pfam01627, Hpt, Hpt domain	6e-12
COG2198	122	COG2198, ArcB, FOG: HPt domain [Signal transductio	1e-04

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 45  EVASLFFDDAEKLINSMARALEQ--PCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFR 102
           E+  LF ++AE+L+  + RAL +     D  ++    H LKGS++S+G  R+  +     
Sbjct: 3   ELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLE 62

Query: 103 SFCDAQNRE 111
              DA    
Sbjct: 63  DLLDALRDG 71

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 56.6 bits (137), Expect = 6e-12
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 45  EVASLFFDDAEKLINSMARALEQPCV-DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRS 103
           E+  LF ++A +L+  + +AL      D + +    H LKGS+ S+G   +  +      
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 104 FCDAQNREG 112
              A     
Sbjct: 61  LLRAGRDGE 69

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
          PD + E+ ++F ++A   +  +  AL     D   +    H+LKGS++S+G   +  +C
Sbjct: 22 PDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLC 78

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG4747	150	consensus Two-component phosphorelay intermediate	99.83
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.58
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.58
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.5
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.48
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.23
PRK10618	894	phosphotransfer intermediate protein in two-compon	98.94
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.7
PRK11091	779	aerobic respiration control sensor protein ArcB; P	98.57
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.4
PRK10547	670	chemotaxis protein CheA; Provisional	98.15
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.12
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.26
PRK15347	921	two component system sensor kinase SsrA; Provision	96.98
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	93.91
PRK01356	166	hscB co-chaperone HscB; Provisional	91.13
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	89.4
cd08323	86	CARD_APAF1 Caspase activation and recruitment doma	89.23
PRK03578	176	hscB co-chaperone HscB; Provisional	83.53
PRK01773	173	hscB co-chaperone HscB; Provisional	82.76

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.83  E-value=5.6e-20  Score=127.36  Aligned_cols=108  Identities=56%  Similarity=0.948  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +..++.+..++..|++++|++|++|.+|++|.++..|+|+.+++..|++++.+.+..++.|+..+. |+..+....|.+|
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlk   83 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLK   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHcc
Confidence            678999999999999999999999999999999999999999999999999999999999998864 9999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHHhhccCC
Q 033767           84 GSSSSIGALRVKNVCIAFRSFCDAQNREG  112 (112)
Q Consensus        84 Gsa~~lGa~~l~~~c~~lE~~~~~~~~~g  112 (112)
                      ||+.++||.++...|..+...|+.++.+|
T Consensus        84 gssssIGa~kvk~~c~~~~~~~~~~n~eg  112 (150)
T KOG4747|consen   84 GSSSSIGALKVKKVCVGFNEFCEAGNIEG  112 (150)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhhccchh
Confidence            99999999999999999999999999886

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-14  Score=97.51  Aligned_cols=69  Identities=23%  Similarity=0.464  Sum_probs=66.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHh
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDA  107 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~  107 (112)
                      +++++++.+++..|+++.+..++.+..++..+  |+..+.+.||+|||+|+++|+.++...|.+||..++.
T Consensus        19 g~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~   87 (122)
T COG2198          19 GGDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRS   87 (122)
T ss_pred             CCChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHc
Confidence            36799999999999999999999999999999  9999999999999999999999999999999999987

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.58  E-value=1e-14  Score=91.53  Aligned_cols=64  Identities=25%  Similarity=0.512  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033767           45 EVASLFFDDAEKLINSMARAL---EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNR  110 (112)
Q Consensus        45 ~li~~f~~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~~  110 (112)
                      +|+..|+++.+..+..|..++   ..+  |++.+.+.+|+|||+++++|+.++...|..||..++.++.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~   67 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDK   67 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCc
Confidence            589999999999999999999   888  9999999999999999999999999999999999998764

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.50  E-value=7.2e-14  Score=87.99  Aligned_cols=63  Identities=25%  Similarity=0.453  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033767           45 EVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN  109 (112)
Q Consensus        45 ~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~  109 (112)
                      +++..|+++.+..+..|..+...+  |+..+.+.+|+|||+|+++|+..|..+|..+|..++...
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~~--~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~   64 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDAQ--DVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR   64 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCHh--HHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999988  999999999999999999999999999999999988654

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.48  E-value=1.4e-13  Score=88.20  Aligned_cols=64  Identities=31%  Similarity=0.533  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033767           44 VEVASLFFDDAEKLINSMARALE----QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN  109 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~~----~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~  109 (112)
                      .+++..|+++.+..+..|..++.    .+  |++.+...+|+|||+++++|+.++...|..+|.+++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~--d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAE--DLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999    78  999999999999999999999999999999999999865

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.23  E-value=5e-11  Score=101.45  Aligned_cols=84  Identities=20%  Similarity=0.321  Sum_probs=73.7

Q ss_pred             CchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHH
Q 033767           23 YVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFR  102 (112)
Q Consensus        23 ~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE  102 (112)
                      ++|..  .+.......+++.+.+++..|+++.+..+..|..++..+  |+..+++.+|+|||+++++|+.++..+|+.||
T Consensus       863 ll~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le  938 (968)
T TIGR02956       863 LLDEE--QLQQDIEVLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLE  938 (968)
T ss_pred             hcCHH--HHHHHHHhcCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            45543  333333456788999999999999999999999999999  99999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 033767          103 SFCDAQNR  110 (112)
Q Consensus       103 ~~~~~~~~  110 (112)
                      .+++.|+.
T Consensus       939 ~~~~~~~~  946 (968)
T TIGR02956       939 KQGKTGAL  946 (968)
T ss_pred             HhcccCCc
Confidence            99998865

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=98.94  E-value=2.6e-09  Score=92.15  Aligned_cols=65  Identities=17%  Similarity=0.342  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033767           44 VEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNR  110 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~~  110 (112)
                      ..++..|++..+.++..|..++..+  |+..+...||+|||+++++|+..+.++|..||+.++.++.
T Consensus       810 s~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~  874 (894)
T PRK10618        810 SDYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDE  874 (894)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCh
Confidence            4567899999999999999999999  9999999999999999999999999999999999998875

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.70  E-value=1.6e-07  Score=79.86  Aligned_cols=67  Identities=24%  Similarity=0.308  Sum_probs=62.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      ..+++.+.+++..|.++....+.++..+...+  |+..+.+++|+|||+++++|+..+..+|.++|.++
T Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~  885 (914)
T PRK11466        819 LMGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQP  885 (914)
T ss_pred             hcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence            45677789999999999999999999999999  99999999999999999999999999999999864

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=98.57  E-value=2.3e-07  Score=78.03  Aligned_cols=77  Identities=16%  Similarity=0.262  Sum_probs=67.4

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033767           30 QLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ  108 (112)
Q Consensus        30 ~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~  108 (112)
                      .+..+.+..++..+.+.+..|.+..+..++.+..++..+  |+..+...+|+|||+++++|+..++.+|..+|.....+
T Consensus       670 ~l~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~  746 (779)
T PRK11091        670 MLEQYVELVGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPA  746 (779)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccc
Confidence            344444445677888999999999999999999999999  99999999999999999999999999999999765544

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.40  E-value=3.7e-06  Score=71.38  Aligned_cols=70  Identities=23%  Similarity=0.360  Sum_probs=66.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ  108 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~  108 (112)
                      .+.++...+++..|.++.+..+..+..++...  |+..+..++|++||+++++|+.++..+|..+|..++.+
T Consensus       820 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~  889 (919)
T PRK11107        820 AGKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSG  889 (919)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence            56778889999999999999999999999999  99999999999999999999999999999999998865

>PRK10547 chemotaxis protein CheA; Provisional

Probab=98.15  E-value=1.3e-05  Score=67.68  Aligned_cols=62  Identities=19%  Similarity=0.386  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---hcCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           44 VEVASLFFDDAEKLINSMARA---LEQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a---~~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      .+++..|++++.+.++.|+..   ++..|.|.   ..+.+.+|+|||+|+++|...+..+|..+|...
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~ll   71 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLL   71 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHH
Confidence            478999999999999888875   44444454   467899999999999999999999999999765

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.12  E-value=9.8e-06  Score=68.94  Aligned_cols=66  Identities=23%  Similarity=0.383  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           40 PDFVVEVASLFFDDAEKLINSMARAL---EQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        40 ~~~~~~li~~f~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      .....+++..|+.++++.+..|..++   +..|.|.   ..+.+.||+|||+|+++|...+.++|..+|...
T Consensus         3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~l   74 (716)
T COG0643           3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLL   74 (716)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHH
Confidence            34567899999999999999999743   3322354   467899999999999999999999999999753

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.26  E-value=0.004  Score=54.95  Aligned_cols=70  Identities=14%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ  108 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~  108 (112)
                      ..+...+.+++..+...+...+..+..+...+  |...+...+|++||++..+|+..+...|.++|......
T Consensus      1096 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~ 1165 (1197)
T PRK09959       1096 ANDLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSD 1165 (1197)
T ss_pred             CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcC
Confidence            45667889999999999999999999999999  99999999999999999999999999999999776543

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.98  E-value=0.0034  Score=53.54  Aligned_cols=60  Identities=17%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033767           46 VASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN  109 (112)
Q Consensus        46 li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~  109 (112)
                      +...+.+.....+..+..++..+  |  .+...+|++||+++.+|+..+...|.++|..++.+.
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~  897 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGE  897 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC
Confidence            44455566677888888888887  6  899999999999999999999999999999987764

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=93.91  E-value=0.5  Score=28.97  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=38.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        38 ~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      ++.+-+.++....-......+..|..++..+  ||..+....++||
T Consensus        24 ~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~kLk   67 (78)
T PF07743_consen   24 DDEAELEELKKEIEERIKELIKELAEAFDAK--DWEEAKEALRKLK   67 (78)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cHHHHHHHHHHHH
Confidence            6667888999999899999999999999999  9999999999986

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=91.13  E-value=1.5  Score=31.09  Aligned_cols=59  Identities=10%  Similarity=0.160  Sum_probs=38.4

Q ss_pred             CchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           23 YVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        23 ~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +|.++++.-+++.+..+++-+.++....-......+..|..++..+  ||+.....+-+||
T Consensus        91 fLme~me~rE~le~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~~L~  149 (166)
T PRK01356         91 ELSIFWDEMERIENTILFSDLEKIKNKYELMYKNEIDSLKQAFEEQ--NLSDATIKTSKLK  149 (166)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            3334444444454445555566666666666667778888999888  9988877776654

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=89.40  E-value=3.3  Score=29.06  Aligned_cols=52  Identities=6%  Similarity=0.097  Sum_probs=40.3

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           30 QLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        30 ~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      .+.++....+++-+..+....-.........|..++..+  ||+.....+.+||
T Consensus        89 ~lee~~~~~d~~~L~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk  140 (157)
T TIGR00714        89 ELDEIEQAKDEARLESFIKRVKKMFQTRHQLLVEQLDNQ--TWAAAADYTRKLR  140 (157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            344444455677777888887777788888899999999  9999988887776

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1

Probab=89.23  E-value=3  Score=26.51  Aligned_cols=66  Identities=12%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             HHHHHhhhhhccCchHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 033767           11 FIDFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH   80 (112)
Q Consensus        11 ~~~~~~~~~~~~~ld~~f~~l~~L~~-~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH   80 (112)
                      ....+..+..+|+++..  ..+.++. ....+-...+|+....-.+.-...+..++...  .+..++.+.|
T Consensus        16 v~~ild~L~~~gvlt~~--~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~--~~~~La~lL~   82 (86)
T cd08323          16 TSYIMDHMISDGVLTLD--EEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHE--GYKDLALLLH   82 (86)
T ss_pred             HHHHHHHHHhcCCCCHH--HHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CChHHHHHHh
Confidence            45688888999999977  5666654 34567778899999999999999999999876  6888888765

Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=83.53  E-value=9.5  Score=27.29  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhh
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQ-PCVDFKQVDSHVHQLK   83 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~-~~~D~~~l~~~aH~LK   83 (112)
                      .++++-+..+....-......+..|..+++. +  ||......+.+||
T Consensus       113 ~~d~~~L~~l~~e~~~~~~~~~~~l~~~~~~~~--d~~~A~~~~~kL~  158 (176)
T PRK03578        113 ARDVDALDALLAELRDERRERYAELGALLDSRG--DDQAAAEAVRQLM  158 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHH
Confidence            3466777777777777778888888988877 7  9999888888877

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=82.76  E-value=11  Score=26.98  Aligned_cols=45  Identities=11%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        37 ~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      ..+++-+..+....-......+..|..++..+  ||+.....+-+||
T Consensus       110 ~~d~~~L~~l~~~v~~~~~~~~~~l~~~~~~~--d~~~A~~~~~rL~  154 (173)
T PRK01773        110 QQDEDALTAFSKEIKQEQQAILTELSTALNSQ--QWQQASQINDRLR  154 (173)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            34566666777776667777788888888888  9987777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		4e-29
4euk_B	159	Crystal Structure Length = 159		1e-28
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		2e-27
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		7e-26

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 88/106 (83%)
Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V Q+++Q++D+  S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++  ++ 
Sbjct: 3   VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62
Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
           A++Q  +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN
Sbjct: 63  AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQN 108

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct: 6   MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 64
Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E 
Sbjct: 65  LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 7   LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
           L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66  EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           EQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+G
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 5   SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ-DESSPDFVVEVASLFFDDAEKLINSMAR 63
           + L++Q     SS++  G VD+QF QL  LQ D  +P FV EV +LF DDA+++I+ +A 
Sbjct: 4   AALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAA 63
Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
            L+QP VDF +VD++VHQLKGSS+S+GA +VK  C+ FR  C  +NR+G
Sbjct: 64  LLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	3e-39
3us6_A	153	Histidine-containing phosphotransfer protein type	7e-37
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	3e-23
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	2e-11
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-08
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	4e-08
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	2e-07
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	6e-07

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  127 bits (320), Expect = 3e-39
 Identities = 56/110 (50%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMA 62
            + L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A
Sbjct: 3   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 62

Query: 63  RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
             LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+G
Sbjct: 63  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  121 bits (304), Expect = 7e-37
 Identities = 59/109 (54%), Positives = 89/109 (81%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V Q+++Q++D+  S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++  ++ 
Sbjct: 3   VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62

Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
           A++Q  +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN + 
Sbjct: 63  AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 87.1 bits (215), Expect = 3e-23
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 16  SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQV 75
           S++  E       +++  + D+   DF   +   F D A+     M R L+    +  ++
Sbjct: 2   STIPSEIINWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGE-KNLTEL 59

Query: 76  DSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
           D+  H LKGSS+++G  R+  VC   ++      
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 55.2 bits (133), Expect = 2e-11
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 29  SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
            ++ +L  E   D V  +  +F  + +  I ++             +    H LK S++S
Sbjct: 15  QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAAS 72

Query: 89  IGALRVKNVCIAFRSFCDAQNREG 112
            GA R+    IA      A   + 
Sbjct: 73  FGADRLCERAIAIDKKAKANQLQE 96

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 29 SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
            L +  +   P  + +  ++F       ++ +   L     D K +    H++KG++ S
Sbjct: 15 PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGS 72

Query: 89 IGALRVKNVC 98
          +G   ++ + 
Sbjct: 73 VGLRHLQQLG 82

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123

 Score = 46.8 bits (111), Expect = 4e-08
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
           D   ++  +  D   ++ N +   L     + + +   +H+L GS    G  R+KN+C
Sbjct: 28 TDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
           +  +E+  +  D   + +  +  AL Q   D   + S +H+L G+S   G    + +C
Sbjct: 19 SNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 43.8 bits (103), Expect = 6e-07
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
             V EV +LF + A      +                 VH +KG++  +GA  +  VC
Sbjct: 24 FAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAARGVGAFNLGEVC 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3us6_A	153	Histidine-containing phosphotransfer protein type	99.97
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	99.96
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.9
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.81
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.76
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.76
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.74
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.63
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.59
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.47
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.35
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.29
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.28
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	98.96
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.74
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	91.54
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	90.27
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	87.0
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	82.39
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	82.02

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=99.97  E-value=7.7e-30  Score=178.03  Aligned_cols=108  Identities=55%  Similarity=1.007  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +.+|+.++.+|++|++++|+||++|++|++|.+.++|+|+.++|..|++++++.+..|+.+++.+++|++.+.++||+||
T Consensus         3 ~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK   82 (153)
T 3us6_A            3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK   82 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999889999999999999999999999999999988779999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033767           84 GSSSSIGALRVKNVCIAFRSFCDAQNRE  111 (112)
Q Consensus        84 Gsa~~lGa~~l~~~c~~lE~~~~~~~~~  111 (112)
                      |||+++||.+|+.+|..||.+|+.++.+
T Consensus        83 Gss~~lGa~~l~~~c~~lE~~~~~~~~~  110 (153)
T 3us6_A           83 GSSASIGAQRVKNSCVAFRNFCEEQNID  110 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999865

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=99.96  E-value=3.2e-28  Score=168.76  Aligned_cols=109  Identities=50%  Similarity=0.874  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033767            3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQ   81 (112)
Q Consensus         3 ~~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~~~~-~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (112)
                      +.++|+.|+..+++|+++.|+||.+|++|.+|.++++ |+|+.++|..|+++++..+..|..+++.+++|+..+..++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   81 (149)
T 1yvi_A            2 AAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            5789999999999999999999988999999987778 999999999999999999999999999875689999999999


Q ss_pred             hhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033767           82 LKGSSSSIGALRVKNVCIAFRSFCDAQNRE  111 (112)
Q Consensus        82 LKGsa~~lGa~~l~~~c~~lE~~~~~~~~~  111 (112)
                      |||||+++||.+|+.+|..||.+|+.++.+
T Consensus        82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~  111 (149)
T 1yvi_A           82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRD  111 (149)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999998754

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.90  E-value=1.1e-23  Score=148.56  Aligned_cols=90  Identities=23%  Similarity=0.408  Sum_probs=85.6

Q ss_pred             hhhhccCchH-HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 033767           17 SLYREGYVDD-QFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRV   94 (112)
Q Consensus        17 ~~~~~~~ld~-~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~l   94 (112)
                      ||.+.|+||. +|++|++|.+.+ |+|+.++|..|++++++.+..|+.|++ .+  |+..+..++|+|||||++|||.+|
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV   78 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI   78 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence            5678899995 899999998766 999999999999999999999999999 77  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 033767           95 KNVCIAFRSFCDAQN  109 (112)
Q Consensus        95 ~~~c~~lE~~~~~~~  109 (112)
                      ..+|.+||.+|+.++
T Consensus        79 ~~~C~~le~~~r~~n   93 (167)
T 2r25_A           79 AWVCERIQNLGRKME   93 (167)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999998

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.81  E-value=3.1e-20  Score=124.46  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=81.0

Q ss_pred             hhhhhccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 033767           16 SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVK   95 (112)
Q Consensus        16 ~~~~~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~   95 (112)
                      ..+.+.+++|..  .|.+|.+..|++++.+++..|+++++..+..|..++..+  |+..+.+.+|+|||+|+++|+.+|+
T Consensus         4 ~~~~~~~~lD~~--~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~   79 (125)
T 2a0b_A            4 ENSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ   79 (125)
T ss_dssp             --CHHHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344566788876  777777667899999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 033767           96 NVCIAFRSFCDAQNR  110 (112)
Q Consensus        96 ~~c~~lE~~~~~~~~  110 (112)
                      .+|..+|.+++.++.
T Consensus        80 ~~~~~lE~~~~~~~~   94 (125)
T 2a0b_A           80 QLGQQIQSPDLPAWE   94 (125)
T ss_dssp             HHHHHHTCTTSTTHH
T ss_pred             HHHHHHHHHHHcCCH
Confidence            999999999887653

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.76  E-value=2.2e-19  Score=120.36  Aligned_cols=88  Identities=20%  Similarity=0.304  Sum_probs=79.3

Q ss_pred             hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033767           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI   99 (112)
Q Consensus        20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~   99 (112)
                      +.+.+|..  ++.+|++..+++++.+++..|++++++.+..|+.+...+  |...+.+.+|+|||||+++|+.+|+.+|.
T Consensus         8 ~~~~~d~~--~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~   83 (120)
T 1y6d_A            8 NTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI   83 (120)
T ss_dssp             CCTTTTTT--HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CCccccHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHH
Confidence            34555644  888898878899999999999999999999999988888  88899999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 033767          100 AFRSFCDAQNRE  111 (112)
Q Consensus       100 ~lE~~~~~~~~~  111 (112)
                      .+|..+|.|+..
T Consensus        84 ~lE~~~r~g~~~   95 (120)
T 1y6d_A           84 AIDKKAKANQLQ   95 (120)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHhCCChh
Confidence            999999998754

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.76  E-value=5.1e-18  Score=113.60  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033767           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI   99 (112)
Q Consensus        20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~   99 (112)
                      |..++|-.  ....+ ..|++++..+|+.+|+++.+..+..|+.+++.+  |++.+.+++|+|||+|+++|+.+|..+|.
T Consensus         2 ~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~   76 (119)
T 3myf_A            2 DLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ   76 (119)
T ss_dssp             CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            55667744  44444 378999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 033767          100 AFRSFCDAQNR  110 (112)
Q Consensus       100 ~lE~~~~~~~~  110 (112)
                      .||.++|.|..
T Consensus        77 ~LE~~~r~~~~   87 (119)
T 3myf_A           77 EIESALKRQTP   87 (119)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999863

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.74  E-value=1.3e-17  Score=112.31  Aligned_cols=85  Identities=18%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             ccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033767           21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA  100 (112)
Q Consensus        21 ~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~  100 (112)
                      .+++|-+  .+..+ ..|++++..+|+.+|+++.+.++..|+.+++.+  |++.+.+++|+|||+|+++|+.+|..+|..
T Consensus        12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~   86 (123)
T 3iqt_A           12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL   86 (123)
T ss_dssp             GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3456644  45454 478999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 033767          101 FRSFCDAQNR  110 (112)
Q Consensus       101 lE~~~~~~~~  110 (112)
                      ||.++|.|+.
T Consensus        87 LE~~~r~g~~   96 (123)
T 3iqt_A           87 IEQQLRSGTK   96 (123)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999864

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.63  E-value=2.7e-16  Score=104.27  Aligned_cols=77  Identities=25%  Similarity=0.375  Sum_probs=66.6

Q ss_pred             ccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033767           21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA  100 (112)
Q Consensus        21 ~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~  100 (112)
                      .+.+|-.  .|..+ ..++++|+.+++..|+++++.++..|..+  ..  ||   .+++|+|||||++|||.+|..+|..
T Consensus         8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~   77 (113)
T 2ooc_A            8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER   77 (113)
T ss_dssp             -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4567755  66655 47899999999999999999999999988  44  76   7999999999999999999999999


Q ss_pred             HHHHHHh
Q 033767          101 FRSFCDA  107 (112)
Q Consensus       101 lE~~~~~  107 (112)
                      ||..++.
T Consensus        78 lE~~~~~   84 (113)
T 2ooc_A           78 CEAGQES   84 (113)
T ss_dssp             HHTTSSC
T ss_pred             HHHHhhh
Confidence            9988764

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.59  E-value=6.1e-16  Score=103.18  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=65.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033767           39 SPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNR  110 (112)
Q Consensus        39 ~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~~  110 (112)
                      .+..-.+++..|+++.++++..|..+++.+  |+..+.+.+|+|||+++++|+.++..+|.+||.+++.++.
T Consensus        29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~   98 (116)
T 1sr2_A           29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV   98 (116)
T ss_dssp             HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred             chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence            445677899999999999999999999999  9999999999999999999999999999999999998864

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.47  E-value=1.6e-13  Score=89.09  Aligned_cols=65  Identities=15%  Similarity=0.341  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhc
Q 033767           43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQN  109 (112)
Q Consensus        43 ~~~li~~f~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~---~~~~  109 (112)
                      +.+++..|++++++.+..|..++.        ..  ++..+.+.+|+|||+|+++|+..+..+|..+|..+   +.|+
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~   78 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSE   78 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999985        34  67899999999999999999999999999999876   5554

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.35  E-value=3.9e-12  Score=86.73  Aligned_cols=65  Identities=15%  Similarity=0.350  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033767           44 VEVASLFFDDAEKLINSMARAL--------EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNR  110 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~---~~~~~  110 (112)
                      .+++..|++++++.+..|..++        ...  ++..+.+.+|+|||+|+++|+..+..+|..+|..+   |.|..
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~   78 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI   78 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998        355  78999999999999999999999999999999865   55553

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.29  E-value=3.9e-12  Score=87.43  Aligned_cols=65  Identities=17%  Similarity=0.372  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HHhhcc
Q 033767           44 VEVASLFFDDAEKLINSMARAL--------EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNR  110 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~---~~~~~~  110 (112)
                      .+++..|++++++.+..|+.++        ...  ++..+.+.+|+|||+|+++|+..+..+|..+|..   .|.|..
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~   81 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM   81 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999998        233  5689999999999999999999999999999987   565543

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.28  E-value=1e-11  Score=81.56  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCC---CHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           44 VEVASLFFDDAEKLINSMARALEQ---PCV---DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      .+++..|++++++.+..|..++..   .|.   ++..+.+.+|+|||+|+++|+..+..+|..+|...
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l   72 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV   72 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence            579999999999999999998732   111   35679999999999999999999999999999743

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=98.96  E-value=1.8e-09  Score=74.16  Aligned_cols=63  Identities=21%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           43 VVEVASLFFDDAEKLINSMARALE---QPCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        43 ~~~li~~f~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      ..+++..|++++++.++.|...+.   +.|.|   ...+.+.+|+|||+|+++|+..+..+|..+|...
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll   77 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI   77 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence            468999999999999999998763   33224   3579999999999999999999999999999865

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.74  E-value=3.2e-08  Score=71.98  Aligned_cols=62  Identities=19%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033767           44 VEVASLFFDDAEKLINSMARAL---EQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC  105 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~  105 (112)
                      .+++..|++++.+.+..|...+   +..|.|.   ..+.+.+|+|||+|+++|+..+.++|..+|...
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l   73 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL   73 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence            4689999999999999999875   3334354   578899999999999999999999999999765

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=91.54  E-value=0.95  Score=31.45  Aligned_cols=62  Identities=8%  Similarity=0.045  Sum_probs=46.5

Q ss_pred             hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +..+|.++++.-++|.+..+.+-+.++....-.........|..++..+  ||+.....+.+||
T Consensus       100 d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~  161 (181)
T 3uo3_A          100 DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK  161 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            3445555544445565555666677888888888888889999999999  9999998888776

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=90.27  E-value=1  Score=31.92  Aligned_cols=49  Identities=20%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           33 KLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        33 ~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      .|.+..+.+-+.++-..+-......+..|..++..+  |++.+...+.+||
T Consensus       143 ~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~  191 (207)
T 3bvo_A          143 KLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR  191 (207)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            344444455566777777777777788889999999  9999998888776

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=82.39  E-value=6.8  Score=26.68  Aligned_cols=51  Identities=8%  Similarity=0.120  Sum_probs=36.9

Q ss_pred             HHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           31 LHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        31 l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      |.+.....+.+-+..+....-......+..|..++..+  ||+.....+.+||
T Consensus       102 lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~  152 (171)
T 1fpo_A          102 LDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR  152 (171)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence            33333334555566776666666677788888999999  9999999888776

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=82.02  E-value=4  Score=21.53  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 033767           59 NSMARALEQPCVDFKQVDSHVHQLKG   84 (112)
Q Consensus        59 ~~L~~a~~~~~~D~~~l~~~aH~LKG   84 (112)
                      .++--|...+  |++++..+=|+||+
T Consensus        15 QqiyvA~seG--d~etv~~Le~QL~~   38 (40)
T 1gp8_A           15 KQMDAAASKG--DVETYRKLKAKLKG   38 (40)
T ss_dssp             HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence            3566688899  99999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	3e-30
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	8e-17
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	3e-14
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	1e-12
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	1e-10
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	4e-05

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  103 bits (257), Expect = 3e-30
 Identities = 56/110 (50%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDE-SSPDFVVEVASLFFDDAEKLINSMA 62
            + L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A
Sbjct: 2   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 61

Query: 63  RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
             LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+G
Sbjct: 62  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 111

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.1 bits (166), Expect = 8e-17
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 17  SLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVD 76
            L       ++ ++     DE++        +LF D     +  +         DF  + 
Sbjct: 7   QLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALA 64

Query: 77  SHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG 112
              H+LKG  + +  +  K +C         ++  G
Sbjct: 65  QTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPG 100

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 3e-14
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 26  DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGS 85
              +++  + D+   DF   +   F D A+     M R L+    +  ++D+  H LKGS
Sbjct: 11  TILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGS 68

Query: 86  SSSIGALRVKNVCIAFRSFCDAQNRE 111
           S+++G  R+  VC   ++        
Sbjct: 69  SAALGLQRIAWVCERIQNLGRKMEHF 94

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (138), Expect = 1e-12
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 28  FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
              L +  +   P  + +  ++F       ++ +   L     D K +    H++KG++ 
Sbjct: 9   IPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAG 66

Query: 88  SIGALRVKNVCIAFRSFCDAQNREG 112
           S+G   ++ +    +S       + 
Sbjct: 67  SVGLRHLQQLGQQIQSPDLPAWEDN 91

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 52.0 bits (124), Expect = 1e-10
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 29  SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
            ++ +L  E   D V  +  +F  + +  I ++             +    H LK S++S
Sbjct: 9   QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAAS 66

Query: 89  IGALRVKNVCIAFRSFCDAQNRE 111
            GA R+    IA      A   +
Sbjct: 67  FGADRLCERAIAIDKKAKANQLQ 89

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 37.3 bits (86), Expect = 4e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
             V EV +LF + A      +                 VH +KG++  +GA  +  VC
Sbjct: 16 FAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAARGVGAFNLGEVC 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.94
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.83
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.82
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.8
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.71
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.68
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.03
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	99.01
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	95.14
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	88.1

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.94  E-value=1.1e-26  Score=158.14  Aligned_cols=108  Identities=50%  Similarity=0.872  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhhhhhccCchHHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 033767            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQL   82 (112)
Q Consensus         4 ~~~l~~~~~~~~~~~~~~~~ld~~f~~l~~L~~-~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L   82 (112)
                      .++|+.++..++.+++++|++|.+|.++..|.+ +++|+|+.+|+..|+++++..+..|..+++.+..||..+++.+|+|
T Consensus         2 ~~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~L   81 (142)
T d1yvia1           2 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            578999999999999999999999999999985 6789999999999999999999999999985434999999999999


Q ss_pred             hhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033767           83 KGSSSSIGALRVKNVCIAFRSFCDAQNRE  111 (112)
Q Consensus        83 KGsa~~lGa~~l~~~c~~lE~~~~~~~~~  111 (112)
                      ||||+++||.+++..|..||.+++.++.+
T Consensus        82 KGss~~lGa~~l~~~~~~lE~~~~~~~~~  110 (142)
T d1yvia1          82 KGSSASVGAQKVKFTCMQFRQFCQDKSRD  110 (142)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhHHhhccHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999865

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.8e-20  Score=129.26  Aligned_cols=89  Identities=21%  Similarity=0.415  Sum_probs=81.0

Q ss_pred             hhccCch-HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHHHH
Q 033767           19 YREGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRVKN   96 (112)
Q Consensus        19 ~~~~~ld-~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~   96 (112)
                      ....+|| .+|++|.+|. +++++|+.+||..|+++++..+++|+.++. .+  |+.++.+++|+|||||+++|+.++..
T Consensus         3 ~p~~~id~~~l~~l~~m~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~~--d~~~l~~~aH~lKgss~~~G~~~~~~   79 (166)
T d2r25a1           3 IPSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRIAW   79 (166)
T ss_dssp             CCSCSSCHHHHHHHHHTT-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcccccCHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            3456788 5789999985 779999999999999999999999999995 48  99999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 033767           97 VCIAFRSFCDAQNR  110 (112)
Q Consensus        97 ~c~~lE~~~~~~~~  110 (112)
                      .|..||+.+|.++.
T Consensus        80 ~~~~ie~~~~~~~~   93 (166)
T d2r25a1          80 VCERIQNLGRKMEH   93 (166)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHccccc
Confidence            99999999987754

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.82  E-value=2.5e-21  Score=126.05  Aligned_cols=88  Identities=20%  Similarity=0.304  Sum_probs=82.0

Q ss_pred             hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033767           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI   99 (112)
Q Consensus        20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~   99 (112)
                      +++++|..  .|.+|....|++++.+++..|+++.+..+..|..++..+  |++.+++.+|+|||+|+++|+.+++.+|.
T Consensus         2 ~~~lld~~--~l~~L~~~~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~~   77 (114)
T d1y6da_           2 NTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI   77 (114)
T ss_dssp             CCTTTTTT--HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHCCHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            56889987  777887766789999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 033767          100 AFRSFCDAQNRE  111 (112)
Q Consensus       100 ~lE~~~~~~~~~  111 (112)
                      .||.+++.++.+
T Consensus        78 ~lE~~~~~~~~~   89 (114)
T d1y6da_          78 AIDKKAKANQLQ   89 (114)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHcCChh
Confidence            999999998764

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.1e-20  Score=121.55  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             hccCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033767           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI   99 (112)
Q Consensus        20 ~~~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~   99 (112)
                      .++++|..  .|.++.+..|++++.+++..|+++.+..+..|+.++.++  |++.+.+.+|+|||+|+++|+.++..+|.
T Consensus         3 ~e~~lD~~--~L~~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~~   78 (118)
T d2a0ba_           3 SEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLGQ   78 (118)
T ss_dssp             HHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            45678876  788888777899999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 033767          100 AFRSFCDAQNRE  111 (112)
Q Consensus       100 ~lE~~~~~~~~~  111 (112)
                      .||.+++.++.+
T Consensus        79 ~lE~~~~~~~~~   90 (118)
T d2a0ba_          79 QIQSPDLPAWED   90 (118)
T ss_dssp             HHTCTTSTTHHH
T ss_pred             HHHHHHHcCCHH
Confidence            999999887653

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.5e-18  Score=113.85  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033767           40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNRE  111 (112)
Q Consensus        40 ~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~~~~~~  111 (112)
                      +.|+.+++..|+++++.++..|+.+++.+  ||..+++.||+|||+++++|+.++..+|..||.+++.++.+
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~   99 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVP   99 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHH
Confidence            45788899999999999999999999999  99999999999999999999999999999999999999864

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.68  E-value=1.1e-17  Score=108.08  Aligned_cols=78  Identities=24%  Similarity=0.334  Sum_probs=68.3

Q ss_pred             cCchHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHH
Q 033767           22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAF  101 (112)
Q Consensus        22 ~~ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~c~~l  101 (112)
                      |-||-.  .|.++. +||++++.+++..|+++++..+..+     .+  |++.+++.+|+|||+|+++||.+++++|..|
T Consensus         1 gaiD~~--~L~~~~-ggd~~l~~~ll~~F~e~~~~~~~~l-----~~--d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~l   70 (104)
T d2ooca1           1 GAVDFA--YLEGFA-AGDFAVVDEVLALFREQAALWAPML-----DP--THPGWKDAVHTVKGAARGVGAFNLGEVCERC   70 (104)
T ss_dssp             CCSCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGC-----ST--TSTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHH-----cc--CHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence            446655  888886 6899999999999999999987655     45  8999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 033767          102 RSFCDAQN  109 (112)
Q Consensus       102 E~~~~~~~  109 (112)
                      |.+++.++
T Consensus        71 E~~~~~~~   78 (104)
T d2ooca1          71 EAGQESLE   78 (104)
T ss_dssp             HTTSSCHH
T ss_pred             HHHHHccC
Confidence            99988754

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=3.7e-10  Score=71.54  Aligned_cols=63  Identities=19%  Similarity=0.416  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033767           44 VEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD  106 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~  106 (112)
                      .+++..|++++.+.+..+...+..   .|.|   ...+.+.+|+|||+|+++|...+..+|..+|...+
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   72 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILD   72 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHH
Confidence            478999999999999999887721   2224   45788999999999999999999999999997643

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=6.6e-10  Score=72.48  Aligned_cols=63  Identities=21%  Similarity=0.376  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033767           44 VEVASLFFDDAEKLINSMARAL---EQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD  106 (112)
Q Consensus        44 ~~li~~f~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~c~~lE~~~~  106 (112)
                      .+++..|++++.+.+..+...+   ++.+.|.   ..+.+.+|+|||+|+++|...+..+|..+|...+
T Consensus         3 ~e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   71 (128)
T d1i5na_           3 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD   71 (128)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHH
Confidence            4678999999999999999976   3333344   4788999999999999999999999999998754

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.038  Score=33.17  Aligned_cols=64  Identities=8%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             hhhccCchHHHH---HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033767           18 LYREGYVDDQFS---QLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (112)
Q Consensus        18 ~~~~~~ld~~f~---~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      ..|+..|.++..   .|.+....++++-+..+....-......+..+..++..+  ||........+||
T Consensus        10 ~~DpeFLMeqME~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk   76 (95)
T d1fpoa2          10 VRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR   76 (95)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhH
Confidence            344455555533   444444457888888998888888899999999999999  9999999988886

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.22  Score=27.87  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=34.3

Q ss_pred             chHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 033767           24 VDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR   63 (112)
Q Consensus        24 ld~~f~~l~~L~~~~~~~~~~~li~~f~~~~~~~l~~L~~   63 (112)
                      +|..++++++|....|+.|+..+++.|-.+.++.+..|-+
T Consensus         6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1           6 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            4566789999999999999999999999999988877643