Citrus Sinensis ID: 033774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Secondary Structure (PSIPRED)
ccccEEEEcccccccccEEEEEccccccccccccccccccEEEEEccHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccEEEEEccccccccccccccccccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
manfvvqlpktnsfnlkrfcvsassngnppgssesrgsgpvilelpldkirrplmrtrandqNKVKELMDSIQQIglqvpvrtnhppppravNLIILVEIFSLAKYCLPMII
Flexible Loop (DISEMBL)
manfvvqlpktnsfnLKRFCVSASsngnppgssesrgsgpvilelpldkirrplmrtrandqnkVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Low Complexity Region (SEG)
MANFVVQLPKTNSFNLKRFCVsassngnppgssesrgsgpVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Disordered region (IsUnstruct)
*************FNLKRFC*****************************************************QIGLQVP*********RAVNLIILVEIFSLAKYCLPMI*
Disordered Region (DISOPRED)
**NFV*QLPKTNSFN****************************ELPLDKIRRPLMR*****QNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Disordered Region (DISEMBL)
MANFVVQLPKTNSFNLKRFCVSA**************SGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Disordered Region (DISPRO)
*ANFVVQLPKTNSFNLKRFCVSA**************SGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPMII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8GY89	125	Sulfiredoxin, chloroplast	no	no	0.375	0.336	0.857	2e-14

>sp|Q8GY89|SRX_ARATH Sulfiredoxin, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SRX PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 42/42 (100%)

Query: 40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPV 81
          P+I+ELPL+KIRRPLMRTR+NDQNKVKELMDSI+QIGLQVP+
Sbjct: 38 PMIVELPLEKIRRPLMRTRSNDQNKVKELMDSIRQIGLQVPI 79

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in a peroxiredoxin. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase. Required to switch on the antioxidant pathway to regenerate the oxidative damage. In mitochondrion, catalyzes the retroreduction of the inactive sulfinic form of atypical Prx IIF using thioredoxin as reducing agent.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 9EC: 8EC: .EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224120300	125	predicted protein [Populus trichocarpa]	0.696	0.624	0.695	2e-22
255565301	127	Sulfiredoxin-1, putative [Ricinus commun	0.705	0.622	0.638	5e-20
449455397	129	PREDICTED: sulfiredoxin, chloroplastic/m	0.714	0.620	0.662	3e-19
449521112	129	PREDICTED: sulfiredoxin, chloroplastic/m	0.714	0.620	0.650	1e-18
351727875	128	uncharacterized protein LOC100527425 [Gl	0.687	0.601	0.697	1e-18
357475223	125	hypothetical protein MTR_4g084180 [Medic	0.687	0.616	0.686	1e-17
281199945	129	sulfiredoxin precursor protein [Pisum sa	0.705	0.612	0.629	2e-17
388519127	128	unknown [Lotus japonicus]	0.687	0.601	0.616	5e-17
225423668	122	PREDICTED: BEACH domain-containing prote	0.669	0.614	0.634	1e-16
147815976	127	hypothetical protein VITISV_007512 [Viti	0.660	0.582	0.641	2e-16

>gi|224120300|ref|XP_002318295.1| predicted protein [Populus trichocarpa] gi|222858968|gb|EEE96515.1| predicted protein [Populus trichocarpa]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSS-ESRGSGPVILELPLDKIRRPLMRTRA 59
          MANFV++LP T+    + F +SASSNG  PG+S  ++  GPVILELPLDKIRRPLMRTRA
Sbjct: 1  MANFVLRLPATS---FRGFSISASSNGAVPGTSTRAQNGGPVILELPLDKIRRPLMRTRA 57

Query: 60 NDQNKVKELMDSIQQIGLQVPV 81
          ND NKVKELMDSI++IGLQVP+
Sbjct: 58 NDPNKVKELMDSIKEIGLQVPI 79

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565301|ref|XP_002523642.1| Sulfiredoxin-1, putative [Ricinus communis] gi|223537094|gb|EEF38728.1| Sulfiredoxin-1, putative [Ricinus communis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 67/83 (80%), Gaps = 4/83 (4%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSASSNGNPPGS--SESRGSGPVILELPLDKIRRPLMRTR 58
          M+NFVV++    + NL+   VSASSNG  PG+  S+++  GPVI+ELPLDKIRRPLMRTR
Sbjct: 1  MSNFVVRVGA--AANLRSLSVSASSNGAAPGNDKSKTQNGGPVIVELPLDKIRRPLMRTR 58

Query: 59 ANDQNKVKELMDSIQQIGLQVPV 81
          AND  KV++LMDSI+QIGLQVP+
Sbjct: 59 ANDPTKVQDLMDSIEQIGLQVPI 81

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455397|ref|XP_004145439.1| PREDICTED: sulfiredoxin, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 67/83 (80%), Gaps = 3/83 (3%)

Query: 1  MAN-FVVQLPKTNSFNLKRFCVSASSNGNPPGSSES-RGSGPVILELPLDKIRRPLMRTR 58
          MAN F+++ P  +S +L+    SASSNG  P S+ S  GSGP+ILELPL+KIRRPLMRTR
Sbjct: 2  MANLFILKFPSFSS-SLRTVSASASSNGAHPLSAGSGNGSGPMILELPLEKIRRPLMRTR 60

Query: 59 ANDQNKVKELMDSIQQIGLQVPV 81
          AND +KVKELMDSIQ+IGLQVP+
Sbjct: 61 ANDPDKVKELMDSIQEIGLQVPI 83

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521112|ref|XP_004167575.1| PREDICTED: sulfiredoxin, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 67/83 (80%), Gaps = 3/83 (3%)

Query: 1  MAN-FVVQLPKTNSFNLKRFCVSASSNGNPPGSSES-RGSGPVILELPLDKIRRPLMRTR 58
          MAN F+++ P  +S +L+    SASSNG  P S+ S  GSGP+IL+LPL+KIRRPLMRTR
Sbjct: 2  MANLFILKFPSFSS-SLRTVSASASSNGAHPLSAGSGNGSGPMILQLPLEKIRRPLMRTR 60

Query: 59 ANDQNKVKELMDSIQQIGLQVPV 81
          AND +KVKELMDSIQ+IGLQVP+
Sbjct: 61 ANDPDKVKELMDSIQKIGLQVPI 83

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727875|ref|NP_001235896.1| uncharacterized protein LOC100527425 [Glycine max] gi|255632314|gb|ACU16515.1| unknown [Glycine max]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 65/86 (75%), Gaps = 9/86 (10%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSASSNGN--PPGSSESRGSG---PVILELPLDKIRRPLM 55
          MANFV+Q P T    L+ F VSASSN N  PPG S S   G   PVILELPLDKIRRPLM
Sbjct: 1  MANFVLQFPNT----LRSFAVSASSNSNGAPPGGSGSSSGGGGGPVILELPLDKIRRPLM 56

Query: 56 RTRANDQNKVKELMDSIQQIGLQVPV 81
          RTR NDQNKV ELMDSI++IGLQVP+
Sbjct: 57 RTRTNDQNKVLELMDSIKEIGLQVPI 82

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475223|ref|XP_003607897.1| hypothetical protein MTR_4g084180 [Medicago truncatula] gi|85719364|gb|ABC75369.1| ParB-like nuclease [Medicago truncatula] gi|355508952|gb|AES90094.1| hypothetical protein MTR_4g084180 [Medicago truncatula] gi|388516001|gb|AFK46062.1| unknown [Medicago truncatula]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 65/83 (78%), Gaps = 6/83 (7%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSASSN--GNPPGSSESRGSGPVILELPLDKIRRPLMRTR 58
          MANFV+Q+P T    L+ F V ASSN  G   G S S G GPVILELPLDKIRRP+MRTR
Sbjct: 1  MANFVLQVPNT----LRSFTVFASSNPNGALSGGSGSGGVGPVILELPLDKIRRPMMRTR 56

Query: 59 ANDQNKVKELMDSIQQIGLQVPV 81
          +NDQNKV+ELMDSI +IGLQVP+
Sbjct: 57 SNDQNKVQELMDSISEIGLQVPI 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281199945|gb|ADA57704.1| sulfiredoxin precursor protein [Pisum sativum]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 2/81 (2%)

Query: 2  ANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSG-PVILELPLDKIRRPLMRTRAN 60
          +NF++QLP   SF +     ++SSNG+PP    S G   P+I+ELPL+KIRRPLMRTR+N
Sbjct: 4  SNFLLQLP-LRSFTVINVASASSSNGSPPVIGGSSGGVGPMIVELPLEKIRRPLMRTRSN 62

Query: 61 DQNKVKELMDSIQQIGLQVPV 81
          DQNKVKELMDSI+QIGLQVP+
Sbjct: 63 DQNKVKELMDSIRQIGLQVPI 83

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519127|gb|AFK47625.1| unknown [Lotus japonicus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 60/86 (69%), Gaps = 9/86 (10%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGP-----VILELPLDKIRRPLM 55
          MANFV+Q+P T    L+ F VSASSN N      S          V+LELPLDKIRRPLM
Sbjct: 1  MANFVLQVPIT----LRSFTVSASSNSNGAPPGGSGSGCGGGGGPVLLELPLDKIRRPLM 56

Query: 56 RTRANDQNKVKELMDSIQQIGLQVPV 81
          RTRANDQ KV+ELMDSI +IGLQVP+
Sbjct: 57 RTRANDQKKVEELMDSIAEIGLQVPI 82

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423668|ref|XP_002276335.1| PREDICTED: BEACH domain-containing protein lvsE [Vitis vinifera] gi|297737984|emb|CBI27185.3| unnamed protein product [Vitis vinifera]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 7/82 (8%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSAS-SNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRA 59
          M +FVVQ P      L+ F V AS +NG P  S +SRG  PVILELPLDKIRRPL+RTR+
Sbjct: 1  MGSFVVQFPS----KLRNFTVWASPNNGVPFDSPQSRG--PVILELPLDKIRRPLLRTRS 54

Query: 60 NDQNKVKELMDSIQQIGLQVPV 81
          ND  KVKELM+SI++IGLQVP+
Sbjct: 55 NDPEKVKELMESIREIGLQVPI 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815976|emb|CAN68076.1| hypothetical protein VITISV_007512 [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 7/81 (8%)

Query: 1  MANFVVQLPKTNSFNLKRFCVSAS-SNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRA 59
          M +FVVQ P      L+ F V AS +NG P  S +SRG  PVILELPLDKIRRPL+RTR+
Sbjct: 1  MGSFVVQFPS----KLRNFTVWASPNNGVPFDSPQSRG--PVILELPLDKIRRPLLRTRS 54

Query: 60 NDQNKVKELMDSIQQIGLQVP 80
          ND  KVKELM+SI++IGLQVP
Sbjct: 55 NDPEKVKELMESIREIGLQVP 75

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_XII0043 hypothetical protein (126 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
smart00470	89	smart00470, ParB, ParB-like nuclease domain	7e-07
pfam02195	90	pfam02195, ParBc, ParB-like nuclease domain	8e-05

>gnl|CDD|214678 smart00470, ParB, ParB-like nuclease domain

 Score = 43.4 bits (103), Expect = 7e-07
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 44 ELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPV 81
          E+P++K+R    + R   +  ++EL +SI++ GL  P+
Sbjct: 2  EVPIEKLRPNPDQPRLTSEESLEELAESIKENGLLQPI 39

Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity. Length = 89

>gnl|CDD|216926 pfam02195, ParBc, ParB-like nuclease domain

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 44 ELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPV 81
          E+P+DK+R    + R   + +++EL+ SI++ GL  P+
Sbjct: 2  EVPIDKLRPNEDQPRLTSEEELEELIASIKEHGLLQPI 39

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG3388	136	consensus Predicted transcription regulator/nuclea	99.57
COG5119	119	Uncharacterized protein, contains ParB-like nuclea	98.85
TIGR03454	325	partition_RepB plasmid partitioning protein RepB.	98.34
smart00470	89	ParB ParB-like nuclease domain. Plasmid RK2 ParB p	98.21
TIGR00180	187	parB_part ParB-like partition proteins. This model	98.16
PRK13866	336	plasmid partitioning protein RepB; Provisional	98.15
TIGR03764	258	ICE_PFGI_1_parB integrating conjugative element, P	98.15
COG1475	240	Spo0J Stage 0 sporulation protein J (antagonist of	97.83
PF02195	90	ParBc: ParB-like nuclease domain; InterPro: IPR003	97.75
PRK13832	520	plasmid partitioning protein; Provisional	97.41
TIGR03734	554	PRTRC_parB PRTRC system ParB family protein. A nov	96.97
PRK13698	323	plasmid-partitioning protein; Provisional	96.21

>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]

Probab=99.57  E-value=2.6e-15  Score=112.93  Aligned_cols=76  Identities=30%  Similarity=0.546  Sum_probs=65.1

Q ss_pred             CcceeEEeccCCcccccceEEeccCCC-CCCCCCCCCCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHh-----
Q 033774            1 MANFVVQLPKTNSFNLKRFCVSASSNG-NPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQ-----   74 (112)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~s~g-~~~~~~~ae~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre-----   74 (112)
                      |||.++|+|.+    +|+|++|++|++ .++            +++||++|.||++  +++|++|+++||+|++.     
T Consensus         1 ~~~~~~r~~~s----~~s~~~S~~S~s~~~p------------v~~~mSei~rPi~--pvLd~qKi~slm~Tmkn~~~c~   62 (136)
T KOG3388|consen    1 MANLMMRLPIS----LRSFSTSAHSSSGSPP------------VEGPMSEIVRPIP--PVLDLQKIRSLMETMKNDQNCV   62 (136)
T ss_pred             Cchhhhhcchh----hhhheeehhccCCCCc------------eecchhhcccCCC--cccCHHHHHHHHHHhcCCCccc
Confidence            89999999999    999999988664 444            7899999999998  89999999999887765     


Q ss_pred             ---------cCCCCCeeeecCCCCCcccEE
Q 033774           75 ---------IGLQVPVRTNHPPPPRAVNLI   95 (112)
Q Consensus        75 ---------~GLr~PIDVleV~p~~~~n~~   95 (112)
                               .|+++||||+|+. -+|+.+.
T Consensus        63 les~d~~~~aGelpPiDvl~v~-~~G~~~Y   91 (136)
T KOG3388|consen   63 LESEDSIRQAGELPPIDVLEVD-SEGGDYY   91 (136)
T ss_pred             hhhHHHHHhcCCCCCceEEEEe-cCCceEE
Confidence                     6999999999998 5565543

>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]

Probab=98.85  E-value=2.4e-09  Score=79.26  Aligned_cols=47  Identities=36%  Similarity=0.494  Sum_probs=41.0

Q ss_pred             CeEEecccccccCCCCCCCCCCHHHHHHHHHHH---------------HhcCCCCCeeee--cCCC
Q 033774           40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSI---------------QQIGLQVPVRTN--HPPP   88 (112)
Q Consensus        40 ~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SI---------------re~GLr~PIDVl--eV~p   88 (112)
                      ..++||||++|+||++  +++|+.||+++|++.               .+.|-++||||+  ++++
T Consensus         8 v~~~EiplseirRPlp--pvlDp~Kv~am~~tM~g~t~~~sc~l~e~~a~aGelpPvDVL~~~v~G   71 (119)
T COG5119           8 VNIQEIPLSEIRRPLP--PVLDPNKVNAMMETMTGKTPPASCGLTEEDAAAGELPPVDVLTFEVDG   71 (119)
T ss_pred             ccceeccHHHhhcCCC--CCCCHHHHHHHHHHhcCCCCCccccchHhHHhcCCCCCceeEEEEecC
Confidence            4689999999999999  899999999997665               667999999999  5554

>TIGR03454 partition_RepB plasmid partitioning protein RepB

Probab=98.34  E-value=1.2e-06  Score=72.52  Aligned_cols=55  Identities=27%  Similarity=0.471  Sum_probs=46.8

Q ss_pred             CCCeEEecccccccCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcc
Q 033774           38 SGPVILELPLDKIRRPLMRTR-ANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAV   92 (112)
Q Consensus        38 ~G~vV~EVPL~~I~RP~~R~r-vlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~   92 (112)
                      .|-.|.+||.+.|+....++| .+|++++++|.+||+++|+++||-|+..+...|.
T Consensus        60 ~g~~v~eldp~~I~~s~~~dR~~~d~~~~~eL~~SIr~~Gq~~PIlVR~~p~~~gr  115 (325)
T TIGR03454        60 EGETVVELDPALIDPSFVRDRLDSDDEAFADLVESIRENGQQVPILVRPHPEAEGR  115 (325)
T ss_pred             CCCceEEeCHHHcCCCCCCCCCCCCHHHHHHHHHHHHHhCCcCCeEEEECCCCCCC
Confidence            488899999999999444444 8899999999999999999999999987654444

Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.

>smart00470 ParB ParB-like nuclease domain

Probab=98.21  E-value=2.9e-06  Score=55.52  Aligned_cols=43  Identities=28%  Similarity=0.497  Sum_probs=37.8

Q ss_pred             ecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        44 EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      +||+++|.. |.+++.. |++++++|.+||++.|..+||.|.+.+
T Consensus         2 ~i~i~~i~~~~~n~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~   45 (89)
T smart00470        2 EVPIEKLRPNPDQPRLT-SEESLEELAESIKENGLLQPIIVRPND   45 (89)
T ss_pred             cccHHHeecCCCCCCcC-CHHHHHHHHHHHHHhCCccCeEEEecC
Confidence            689999995 7764445 999999999999999999999999865

Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.

>TIGR00180 parB_part ParB-like partition proteins

Probab=98.16  E-value=5e-06  Score=61.82  Aligned_cols=48  Identities=21%  Similarity=0.443  Sum_probs=42.4

Q ss_pred             eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033774           41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP   88 (112)
Q Consensus        41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p   88 (112)
                      .+.++|++.|.. |..++..++++++++|.+||++.|+.+||-|+..+.
T Consensus         4 ~~~~ip~~~l~~~~~n~R~~~~~~~i~~L~~SI~~~G~~~Pi~V~~~~~   52 (187)
T TIGR00180         4 GLIEIDIDLLQPNPYQPRKDFSEESLAELIESIKEQGQLQPILVRKHPD   52 (187)
T ss_pred             eeEEeeHHHccCCCCCCCCCCCHHHHHHHHHHHHHhCCccCeEEEECCC
Confidence            367899999998 776556899999999999999999999999998764

This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.

>PRK13866 plasmid partitioning protein RepB; Provisional

Probab=98.15  E-value=4.5e-06  Score=69.93  Aligned_cols=55  Identities=27%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             CCCCeEEecccccccCCCCCCC-CCC-HHHHHHHHHHHHhcCCCCCeeeecCCCCCc
Q 033774           37 GSGPVILELPLDKIRRPLMRTR-AND-QNKVKELMDSIQQIGLQVPVRTNHPPPPRA   91 (112)
Q Consensus        37 ~~G~vV~EVPL~~I~RP~~R~r-vlD-eeKVqELM~SIre~GLr~PIDVleV~p~~~   91 (112)
                      +.|-.|.||+.+.|+.-+.+|| .+| .++++||.+||+++|+++||-|+..+...|
T Consensus        60 ~~g~~v~eid~~~I~~s~~~dRl~~d~d~~~~eL~~SI~~~Gq~~PIlVRp~p~~~g  116 (336)
T PRK13866         60 AAGEAVVSLDPSMIDGSPIADRLPADVDPKFEQLEASISQEGQQVPILVRPHPEAAG  116 (336)
T ss_pred             hCCCeEEEeCHHHccCCcCCCCcCCCccHHHHHHHHHHHHhCCcCCeEEEECCCCCC
Confidence            3888999999999999655577 665 479999999999999999999999875444

>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein

Probab=98.15  E-value=4e-06  Score=68.30  Aligned_cols=47  Identities=23%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033774           41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP   88 (112)
Q Consensus        41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p   88 (112)
                      ....||+++|.+ |.++|..+|++ +++|.+||+++|+++||.|...++
T Consensus         7 ~~~~l~Id~I~Pn~~qPR~~fd~~-l~eLa~SIre~Gl~qPI~Vr~~p~   54 (258)
T TIGR03764         7 TPMVLTLDQLRPYEDNPRTTRNPK-YDEIKASIRERGLDQPPKVTRRPG   54 (258)
T ss_pred             ceEEEEHHHcccCCCCCCCCCCHH-HHHHHHHHHHhCCcCCeEEEecCC
Confidence            356799999999 88777889988 999999999999999999998765

Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.

>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]

Probab=97.83  E-value=2.8e-05  Score=57.23  Aligned_cols=45  Identities=27%  Similarity=0.446  Sum_probs=40.4

Q ss_pred             eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeec
Q 033774           41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNH   85 (112)
Q Consensus        41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVle   85 (112)
                      .+.++++..|.. |+++++.+|++++++|.+||+++|+.+||-|..
T Consensus         3 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~l~~SI~~~G~~~Pi~v~~   48 (240)
T COG1475           3 RVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRP   48 (240)
T ss_pred             cceecCHHHcCCCCCCCCccCCHHHHHHHHHHHHHhCCcCCeeEee
Confidence            567889999998 666666899999999999999999999999996

>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA

Probab=97.75  E-value=1.4e-05  Score=51.61  Aligned_cols=43  Identities=28%  Similarity=0.506  Sum_probs=34.9

Q ss_pred             ecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        44 EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      +||++.|.. +...+.. +++++++|.+||++.|+.+||.|...+
T Consensus         2 ~v~~~~l~~~~~~~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~   45 (90)
T PF02195_consen    2 EVPISKLKPSPDNPRKD-DPEKIEELAESIKENGQLQPIIVRRRN   45 (90)
T ss_dssp             EEEGGGEE-SBS-HHHH-HHHHHHHHHHHHHHHGCSS-EEEEEEC
T ss_pred             eEeHHHCCCCCCCCCCC-CHHHHHHHHHHHHhcCCCCCcEEEeec
Confidence            689999994 5532224 899999999999999999999999987

ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....

>PRK13832 plasmid partitioning protein; Provisional

Probab=97.41  E-value=0.0003  Score=62.37  Aligned_cols=47  Identities=13%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             eEEecccccccC-CCCCCCCC-CHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           41 VILELPLDKIRR-PLMRTRAN-DQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        41 vV~EVPL~~I~R-P~~R~rvl-DeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      .+.+||++.|.. |.++|+.+ |++++++|.+||+++|+.+||-|+..+
T Consensus         2 ~L~~Id~~~L~~nP~NpRr~~~~~e~I~ELAaSIr~~GLLQPIiVRp~~   50 (520)
T PRK13832          2 ELRKVDPRALKDNPDNTRRSKSSPQSDALLLATIKAVGIVQPPVVSPEE   50 (520)
T ss_pred             eeEEecHHHCCcCCCCCCCCCCCHHHHHHHHHHHHHhCCccCcEEEecC
Confidence            467899999998 88666654 689999999999999999999999754

>TIGR03734 PRTRC_parB PRTRC system ParB family protein

Probab=96.97  E-value=0.0014  Score=58.21  Aligned_cols=39  Identities=26%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033774           50 IRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP   88 (112)
Q Consensus        50 I~RP~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p   88 (112)
                      |+.+..+|+.+|+++++||.+||+++|+.+||-|+..+.
T Consensus         2 i~~~~NPRk~~d~~~IeELA~SIr~~GlLQPIlVRp~~~   40 (554)
T TIGR03734         2 IVPGNNPRRYFDPAEMAELVESIRAKGVLQPILVRPVPG   40 (554)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCccCeEEEEcCC
Confidence            566777777999999999999999999999999996643

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.

>PRK13698 plasmid-partitioning protein; Provisional

Probab=96.21  E-value=0.0053  Score=51.60  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCCC-CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           55 MRTR-ANDQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        55 ~R~r-vlDeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      .|+. .|||+++++|.+||+++|+++||-|++++
T Consensus        78 ~R~Q~~f~e~sL~dL~~SIk~~G~~qPiivR~~~  111 (323)
T PRK13698         78 ERDQELLTEDSLDDLIPSFLLTGQQTPAFGRRVS  111 (323)
T ss_pred             CcchhhCCHHHHHHHHHHHHHhCCCcCeEEEEeC
Confidence            5666 99999999999999999999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1yzs_A	121	Sulfiredoxin; PARB domain fold, oxidoreductase; NM	3e-11
1xw3_A	110	Sulfiredoxin; retroreduction, sulfinic acid, perox	6e-08

>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A* Length = 121

 Score = 55.0 bits (132), Expect = 3e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 22 SASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP 80
              +G   G S   G    +  +PL  + RPL      D  KV+ L+D+I++    VP
Sbjct: 5  GPGPSGGAQGGSIHSGRIAAVHNVPLSVLIRPLPSV--LDPAKVQSLVDTIREDPDSVP 61

>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X* Length = 110

 Score = 46.1 bits (109), Expect = 6e-08
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 29 PPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPV 81
          P  S  S     V   +PL  + RPL      D  KV+ L+D+I++    VP 
Sbjct: 2  PHMSIHSGRIAAVH-NVPLSVLIRPLPSV--LDPAKVQSLVDTIREDPDSVPP 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
1xw3_A	110	Sulfiredoxin; retroreduction, sulfinic acid, perox	99.59
1yzs_A	121	Sulfiredoxin; PARB domain fold, oxidoreductase; NM	99.59
1vz0_A	230	PARB, chromosome partitioning protein PARB; nuclea	98.22
1vk1_A	242	Conserved hypothetical protein; reductive methylat	96.72

>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*

Probab=99.59  E-value=1.6e-15  Score=107.82  Aligned_cols=57  Identities=21%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             CeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecCCCCCcccEEEee
Q 033774           40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHPPPPRAVNLIILV   98 (112)
Q Consensus        40 ~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV~p~~~~n~~~~~   98 (112)
                      ..|++|||++|++|+|  |++|++||+|||+||+++|++ +||+|+|+++.+++|-..|+
T Consensus        12 ~~v~~IPi~~I~~p~~--~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li   69 (110)
T 1xw3_A           12 AAVHNVPLSVLIRPLP--SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSF   69 (110)
T ss_dssp             EEEEEEEGGGEECCSC--CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECC
T ss_pred             ceEEEeCHHHccCCCC--CccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEE
Confidence            4799999999999999  599999999999999999998 89999999998888876655

>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*

Probab=99.59  E-value=2e-15  Score=109.33  Aligned_cols=60  Identities=22%  Similarity=0.277  Sum_probs=54.1

Q ss_pred             CCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecCCCCCcccEEEee
Q 033774           37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHPPPPRAVNLIILV   98 (112)
Q Consensus        37 ~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV~p~~~~n~~~~~   98 (112)
                      ..-..|++|||++|+||++  |++|++||+|||+||+++||+ +||||+|+++.+|+|-..++
T Consensus        20 ~~~~~i~~IPl~~I~~p~~--r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~   80 (121)
T 1yzs_A           20 GRIAAVHNVPLSVLIRPLP--SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSF   80 (121)
T ss_dssp             SCCCCEEEEEGGGEECCCC--CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECC
T ss_pred             CCcceEEEeeHHHeeCCCC--CcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEE
Confidence            3445889999999999998  699999999999999999998 89999999998888876665

>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1

Probab=98.22  E-value=3.3e-07  Score=69.57  Aligned_cols=47  Identities=32%  Similarity=0.468  Sum_probs=41.9

Q ss_pred             eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      .+.+||++.|.. |.++++.+|++++++|.+||++.|+.+||.|...+
T Consensus        22 ~i~~i~i~~I~~~~~npR~~~~~~~~~eLa~SI~~~G~l~PI~V~~~~   69 (230)
T 1vz0_A           22 GVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQG   69 (230)
T ss_dssp             -CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEET
T ss_pred             ceEEEEHHHcccCCCCCCccCCHHHHHHHHHHHHHcCceeCeEEEEeC
Confidence            578999999999 78766689999999999999999999999998753

>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2

Probab=96.72  E-value=0.0013  Score=50.42  Aligned_cols=42  Identities=17%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             eEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecC
Q 033774           41 VILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHP   86 (112)
Q Consensus        41 vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV   86 (112)
                      .+..+|++.|.    ++..+|++|+++|++||++.|.. +||-|...
T Consensus        17 ~i~~i~~~~i~----p~e~~~~~~~~~l~~sI~~~G~~~~PIiV~~~   59 (242)
T 1vk1_A           17 EYVFIELDKMX----PHEQLVQRELEDFIESVTGSGIFWKPMLLAKI   59 (242)
T ss_dssp             CCEEEEGGGEE----CSBCCCHHHHHHHHHHHHHHCEECSCEEEEEC
T ss_pred             eEEEEehhhcC----CCcCCCHHHHHHHHHHHHHhCCccCCEEEEec
Confidence            34555555554    34578999999999999999998 99999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1xw3a1	110	d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sap	2e-06

>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Sulfiredoxin-like
domain: Sulfiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-06
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 30 PGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVR 82
          P  S   G    +  +PL  + RPL      D  KV+ L+D+I++    VP  
Sbjct: 2  PHMSIHSGRIAAVHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPI 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1xw3a1	110	Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1vz0a2	93	Putative partitioning protein ParB/Spo0J {Thermus	98.66
d1vk1a_	232	Hypothetical protein PF0380 {Pyrococcus furiosus [	96.95

>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Sulfiredoxin-like
domain: Sulfiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.2e-12  Score=89.07  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             eEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCC-CCCeeeecCCCCCcccEEEeee
Q 033774           41 VILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGL-QVPVRTNHPPPPRAVNLIILVE   99 (112)
Q Consensus        41 vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GL-r~PIDVleV~p~~~~n~~~~~~   99 (112)
                      .|++||+++|+||+|  |.+|++++++|++||++.|+ ++||.|++++++++++-..++.
T Consensus        13 ~i~~IPl~~I~~p~~--r~~d~~~i~eL~~SI~~~G~~~ppivV~~~~~~~~~~~Y~li~   70 (110)
T d1xw3a1          13 AVHNVPLSVLIRPLP--SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFG   70 (110)
T ss_dssp             EEEEEEGGGEECCSC--CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCS
T ss_pred             eEEEecHHHcCCCCC--CCCCHHHHHHHHHHHHhhhcccCcceEEeecccCCCCcEEEEe
Confidence            799999999999999  56999999999999999996 5789999999988887655543

>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: ParB-like nuclease domain
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=2.3e-09  Score=70.19  Aligned_cols=46  Identities=33%  Similarity=0.502  Sum_probs=41.0

Q ss_pred             EEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033774           42 ILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP   87 (112)
Q Consensus        42 V~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~   87 (112)
                      |.+||++.|.+ |.++|+.+|++++++|++||++.|+.+||.|+..+
T Consensus         1 I~~Ipi~~i~~~p~npR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~   47 (93)
T d1vz0a2           1 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQG   47 (93)
T ss_dssp             CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEET
T ss_pred             CeEEEHHHCccCCCCCCCcCCHHHHHHHHHHHHhCCCCceeEEEEcC
Confidence            46899999998 88766688999999999999999999999998643

>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Hypothetical protein PF0380
domain: Hypothetical protein PF0380
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.00028  Score=52.13  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             EEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec
Q 033774           42 ILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH   85 (112)
Q Consensus        42 V~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle   85 (112)
                      |.++.+..|.. +++|++.+|++++++|.+||+++|.. +||.|..
T Consensus         3 v~~ie~~~i~~~~l~P~~~~~~~~l~~L~~sI~~~G~~~ppivv~~   48 (232)
T d1vk1a_           3 VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAK   48 (232)
T ss_dssp             EECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEE
T ss_pred             ceecceeEeccccCCCCccCCHHHHHHHHHHHHHcCCCCCCEEEee
Confidence            34555555555 56666799999999999999999965 5665543