Citrus Sinensis ID: 033812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEVPPKISSFCAITALYYMIRI
Secondary Structure (PSIPRED)
ccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdggggsnggslSYYAILgirkdasfSDIRSAYHKLAMkwhpdrsaknpgvageaKCRFQQIQEAYSVLSdenkrsmydaglydpleeedevppkissfCAITALYYMIRI
Flexible Loop (DISEMBL)
mdggggsngGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYsvlsdenkrSMYDAGLYdpleeedevppkissfCAITALYYMIRI
Low Complexity Region (SEG)
MDggggsnggslsYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEVPPKISSFCAITALYYMIRI
Disordered region (IsUnstruct)
***********LSYYAILGIRKDASFSDIRSAYHKLAMKWH*************AKCRFQQIQEAYSVL************LY***********KISSFCAITALYYMI**
Disordered Region (DISOPRED)
*************YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN****GE*KCRFQQIQEAYSVLSDENKRSMYDAGLY*****************AITALYYMIRI
Disordered Region (DISEMBL)
********GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRS*********AKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEVPPKISSFCAITALYYMIRI
Disordered Region (DISPRO)
*********GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE*******ISSFCAITALYYMIRI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEVPPKISSFCAITALYYMIRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q6P642	242	DnaJ homolog subfamily B	yes	no	0.585	0.268	0.529	7e-15
Q5FWN8	250	DnaJ homolog subfamily B	N/A	no	0.585	0.26	0.514	8e-15
Q5F3Z5	326	DnaJ homolog subfamily B	yes	no	0.585	0.199	0.544	1e-14
Q0III6	242	DnaJ homolog subfamily B	yes	no	0.585	0.268	0.529	2e-14
A6LJ63	373	Chaperone protein DnaJ OS	yes	no	0.657	0.195	0.493	2e-14
Q4R7Y5	241	DnaJ homolog subfamily B	N/A	no	0.585	0.269	0.529	2e-14
Q9QYI7	227	DnaJ homolog subfamily B	yes	no	0.576	0.281	0.537	2e-14
O75190	326	DnaJ homolog subfamily B	no	no	0.585	0.199	0.529	3e-14
Q5R8H0	326	DnaJ homolog subfamily B	no	no	0.585	0.199	0.529	3e-14
Q607A6	377	Chaperone protein DnaJ OS	yes	no	0.558	0.164	0.545	4e-14

>sp|Q6P642|DNJB6_XENTR DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG++++AS  DI+ AY KLA+KWHPD   KNP    EA+ RF+++ EAY VLSD
Sbjct: 2  VEYYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 SKKRDIYD 66

Plays an indispensable role in the organization of krt8/krt18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.
Xenopus tropicalis (taxid: 8364)

>sp|Q5FWN8|DNJ6A_XENLA DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-a PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG++++AS  DI+ AY +LA+KWHPD   KNP    EA+ RF+++ EAY VLSD
Sbjct: 2  VEYYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 SKKRDIYD 66

Plays an indispensable role in the organization of krt8/krt18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.

Xenopus laevis (taxid: 8355)

>sp|Q5F3Z5|DNJB6_CHICK DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG++K AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD
Sbjct: 2  VDYYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 AKKRDIYD 66

Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.

Gallus gallus (taxid: 9031)

>sp|Q0III6|DNJB6_BOVIN DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD
Sbjct: 2  VDYYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 AKKRDIYD 66

Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.

Bos taurus (taxid: 9913)

>sp|A6LJ63|DNAJ_THEM4 Chaperone protein DnaJ OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaJ PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 8/81 (9%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++A+  +IR AY KL  KWHPDR+ +N  +A E   +F++IQEAY VLSD  
Sbjct: 6  YYEILGVSRNATQEEIRQAYKKLIKKWHPDRNYENKKLAEE---KFKEIQEAYEVLSDPE 62

Query: 74 KRSMYDAGLYDPLEEEDEVPP 94
          KR+MYD   Y       +VPP
Sbjct: 63 KRAMYDKFGY-----VGDVPP 78

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

>sp|Q4R7Y5|DNJB6_MACFA DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD
Sbjct: 2  VDYYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 AKKRDIYD 66

Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.

Macaca fascicularis (taxid: 9541)

>sp|Q9QYI7|DNJB8_MOUSE DnaJ homolog subfamily B member 8 OS=Mus musculus GN=Dnajb8 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
          +YY +LG++  AS  DI+ AY KLA++WHPD   KNP    EA+ +F+Q+ EAY VLSD 
Sbjct: 3  NYYEVLGVQSSASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKQVSEAYEVLSDS 59

Query: 73 NKRSMYD 79
           KRS+YD
Sbjct: 60 KKRSVYD 66

Mus musculus (taxid: 10090)

>sp|O75190|DNJB6_HUMAN DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD
Sbjct: 2  VDYYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 AKKRDIYD 66

Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70. Reduces huntingtin aggregation associated with HD. Also reduces cellular toxicity and caspase-3 activity.

Homo sapiens (taxid: 9606)

>sp|Q5R8H0|DNJB6_PONAB DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD
Sbjct: 2  VDYYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSD 58

Query: 72 ENKRSMYD 79
            KR +YD
Sbjct: 59 AKKRDIYD 66

Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Has a stimulatory effect on the ATPase activity of HSP70 in a dose-dependent and time-dependent manner and hence acts as a co-chaperone of HSP70.

Pongo abelii (taxid: 9601)

>sp|Q607A6|DNAJ_METCA Chaperone protein DnaJ OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=dnaJ PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 48/66 (72%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY  LG+ ++AS SDI+ A+ +LAMK+HPDR+  NP    EA+ RF+ ++EAY VLSD  
Sbjct: 6  YYETLGVPRNASDSDIKKAFRRLAMKYHPDRNKDNP----EAEERFKSVKEAYDVLSDPK 61

Query: 74 KRSMYD 79
          KRS YD
Sbjct: 62 KRSAYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
255633060	163	unknown [Glycine max]	0.810	0.552	0.791	9e-35
12321759	97	DnaJ protein, putative [Arabidopsis thal	0.792	0.907	0.820	5e-34
388497224	161	unknown [Lotus japonicus]	0.819	0.565	0.747	1e-33
297853508	156	hypothetical protein ARALYDRAFT_474793 [	0.747	0.532	0.845	1e-33
269999990	163	DnaJ-like protein [Glycine max]	0.810	0.552	0.780	2e-33
359806699	163	chaperone protein DnaJ-like [Glycine max	0.810	0.552	0.780	2e-33
351722303	164	DnaJ-like protein [Glycine max] gi|23428	0.810	0.548	0.782	2e-33
449454042	161	PREDICTED: chaperone protein DnaJ-like [	0.810	0.559	0.769	3e-33
255542846	165	heat shock protein binding protein, puta	0.810	0.545	0.780	3e-33
224123920	160	predicted protein [Populus trichocarpa]	0.765	0.531	0.813	6e-33

>gi|255633060|gb|ACU16885.1| unknown [Glycine max]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSNGGS  YY++LGIR+DASFSDIR+AY KLAM+WHPD+ A+NP  AGEAK RFQ
Sbjct: 1  MDREGGSNGGSC-YYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
          QIQEAYSVLSD++KRSMYDAGLYDPLEEED+
Sbjct: 60 QIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQ 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12321759|gb|AAG50919.1|AC069159_20 DnaJ protein, putative [Arabidopsis thaliana]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 79/89 (88%), Gaps = 1/89 (1%)

Query: 4  GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQ 63
          GGGSN  S SYY ILGIRKDAS SDIR+AY KLAMKWHPDR A+NPGVAGEAK RFQQIQ
Sbjct: 5  GGGSNVRS-SYYTILGIRKDASVSDIRTAYRKLAMKWHPDRYARNPGVAGEAKRRFQQIQ 63

Query: 64 EAYSVLSDENKRSMYDAGLYDPLEEEDEV 92
          EAYSVL+DENKRSMYD GLYDP E++D+V
Sbjct: 64 EAYSVLNDENKRSMYDVGLYDPHEDDDDV 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497224|gb|AFK36678.1| unknown [Lotus japonicus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 78/91 (85%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSNGG   YY++LGIR+DAS SDIR+AY KLAMKWHPDR  +NP   GEAK RFQ
Sbjct: 1  MDREGGSNGGGSCYYSVLGIRRDASSSDIRTAYRKLAMKWHPDRWTRNPATTGEAKRRFQ 60

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
          +IQEAYSVLSD++KRSMYDAGL+DPLEEED+
Sbjct: 61 EIQEAYSVLSDQSKRSMYDAGLHDPLEEEDQ 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853508|ref|XP_002894635.1| hypothetical protein ARALYDRAFT_474793 [Arabidopsis lyrata subsp. lyrata] gi|297340477|gb|EFH70894.1| hypothetical protein ARALYDRAFT_474793 [Arabidopsis lyrata subsp. lyrata]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/84 (84%), Positives = 75/84 (89%), Gaps = 1/84 (1%)

Query: 4  GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQ 63
          GGGSN  S SYY +LGIRKDAS SDIR+AY KLAMKWHPDR A+NPGVAGEAK RFQQIQ
Sbjct: 5  GGGSNNRS-SYYNVLGIRKDASVSDIRTAYRKLAMKWHPDRYARNPGVAGEAKRRFQQIQ 63

Query: 64 EAYSVLSDENKRSMYDAGLYDPLE 87
          EAYSVL+DENKRSMYD GLYDPLE
Sbjct: 64 EAYSVLNDENKRSMYDVGLYDPLE 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269999990|gb|ACZ57923.1| DnaJ-like protein [Glycine max]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 80/91 (87%), Gaps = 1/91 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSN GS  YY++LGIR+DASFSDIR+AY KLAM+WHPD+ A NP  AGEAK RFQ
Sbjct: 1  MDREGGSNAGSC-YYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWALNPATAGEAKRRFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
          QIQEAYSVLSD++KRSMYDAGLYDPLEEED+
Sbjct: 60 QIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQ 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806699|ref|NP_001241290.1| chaperone protein DnaJ-like [Glycine max] gi|255640851|gb|ACU20708.1| unknown [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 80/91 (87%), Gaps = 1/91 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSN GS  YY++LGIR+DASFSDIR+AY KLAM+WHPD+ A NP  AGEAK RFQ
Sbjct: 1  MDREGGSNAGSC-YYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWALNPATAGEAKRRFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
          QIQEAYSVLSD++KRSMYDAGLYDPLEEED+
Sbjct: 60 QIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQ 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722303|ref|NP_001238007.1| DnaJ-like protein [Glycine max] gi|23428796|gb|AAM23263.1| DnaJ-like protein [Glycine max]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 82/92 (89%), Gaps = 2/92 (2%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSNGGS  YY++LGIR+DASFSDIR+AY KLAM+WHPD+ A+NP  AGEAK RFQ
Sbjct: 1  MDREGGSNGGSC-YYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWAQNPATAGEAKRRFQ 59

Query: 61 QIQEAYS-VLSDENKRSMYDAGLYDPLEEEDE 91
          QIQEAYS VLSD++KRSMYDAGLYDPLEEED+
Sbjct: 60 QIQEAYSAVLSDKSKRSMYDAGLYDPLEEEDQ 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454042|ref|XP_004144765.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 80/91 (87%), Gaps = 1/91 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD GGGS+GG+ SYYAILGIRKDAS SDIR+AY KLA+KWHPDR  +NP VAGEAK +FQ
Sbjct: 1  MDRGGGSDGGT-SYYAILGIRKDASLSDIRTAYRKLALKWHPDRWMRNPAVAGEAKRQFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
           +QEAYSVLSD+ KRS+YDAGLYDP EE+DE
Sbjct: 60 LVQEAYSVLSDQTKRSVYDAGLYDPTEEDDE 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542846|ref|XP_002512486.1| heat shock protein binding protein, putative [Ricinus communis] gi|223548447|gb|EEF49938.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGSNGGS  YY++LGIR+DASFSDIR+AY KLAMKWHPD+ A N  VAGE K RFQ
Sbjct: 1  MDREGGSNGGS-CYYSVLGIRRDASFSDIRTAYRKLAMKWHPDKWAGNTAVAGEVKRRFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPLEEEDE 91
          QIQEAYSVLSD+ KRS+YDAGLYDPLEEED+
Sbjct: 60 QIQEAYSVLSDQAKRSIYDAGLYDPLEEEDD 90

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123920|ref|XP_002330242.1| predicted protein [Populus trichocarpa] gi|222871698|gb|EEF08829.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 77/86 (89%), Gaps = 1/86 (1%)

Query: 1  MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQ 60
          MD  GGS GGS  YY +LGIR+DASFSDIRSAY KLAMKWHPD+ A+NPGVAGEAK RFQ
Sbjct: 1  MDREGGSKGGSC-YYTVLGIRRDASFSDIRSAYRKLAMKWHPDKWAQNPGVAGEAKRRFQ 59

Query: 61 QIQEAYSVLSDENKRSMYDAGLYDPL 86
          QIQEAYSVLSD++K+SMYDAGLYDPL
Sbjct: 60 QIQEAYSVLSDQSKKSMYDAGLYDPL 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2011846	156	AT1G56300 [Arabidopsis thalian	0.702	0.5	0.833	1.6e-31
TAIR|locus:2013940	165	AT1G71000 [Arabidopsis thalian	0.684	0.460	0.684	2.1e-22
TAIR|locus:2087492	230	AT3G14200 "AT3G14200" [Arabido	0.684	0.330	0.545	1.7e-18
ZFIN|ZDB-GENE-040426-1122	311	dnajb6b "DnaJ (Hsp40) homolog,	0.567	0.202	0.621	5.5e-16
ZFIN|ZDB-GENE-040718-45	331	dnajb6a "DnaJ (Hsp40) homolog,	0.567	0.190	0.545	5.4e-15
UNIPROTKB|Q0III6	242	DNAJB6 "DnaJ homolog subfamily	0.567	0.260	0.545	6.9e-15
UNIPROTKB|Q5F3Z5	326	DNAJB6 "DnaJ homolog subfamily	0.567	0.193	0.560	8.5e-15
TAIR|locus:1009023133	201	AT1G72416 [Arabidopsis thalian	0.801	0.442	0.422	8.8e-15
UNIPROTKB|C9J2C4	228	DNAJB6 "DnaJ homolog subfamily	0.567	0.276	0.545	1.1e-14
UNIPROTKB|Q4R7Y5	241	DNAJB6 "DnaJ homolog subfamily	0.567	0.261	0.545	1.1e-14

TAIR|locus:2011846 AT1G56300 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 65/78 (83%), Positives = 71/78 (91%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY ILGIRKDAS SDIR+AY KLAMKWHPDR A+NPGVAGEAK RFQQIQEAYSVL+DEN
Sbjct:    14 YYTILGIRKDASVSDIRTAYRKLAMKWHPDRYARNPGVAGEAKRRFQQIQEAYSVLNDEN 73

Query:    74 KRSMYDAGLYDPLEEEDE 91
             KRSMYD GLYDP E++D+
Sbjct:    74 KRSMYDVGLYDPHEDDDD 91

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2013940 AT1G71000 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 52/76 (68%), Positives = 57/76 (75%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY ILG+  D+S   IR AYHKLA  WHPDR  K+P  +GEAK RFQQIQEAYSVLSDE 
Sbjct:     9 YYEILGVAVDSSAEQIRRAYHKLAKIWHPDRWTKDPFRSGEAKRRFQQIQEAYSVLSDER 68

Query:    74 KRSMYDAGLYDPLEEE 89
             KRS YD GLYD  E+E
Sbjct:    69 KRSSYDVGLYDSGEDE 84

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2087492 AT3G14200 "AT3G14200" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 42/77 (54%), Positives = 59/77 (76%)

Query:    15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
             YA+LG++K+ S +++RSAY KLA++WHPDR +    V  EAK +FQ IQEAYSVLSD NK
Sbjct:    14 YAVLGLKKECSKTELRSAYKKLALRWHPDRCSSMEFVE-EAKKKFQAIQEAYSVLSDSNK 72

Query:    75 RSMYDAGLYDPLEEEDE 91
             R +YD G Y+  +++D+
Sbjct:    73 RFLYDVGAYNTDDDDDQ 89

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1122 dnajb6b "DnaJ (Hsp40) homolog, subfamily B, member 6b" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 41/66 (62%), Positives = 47/66 (71%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY ILG+ K AS  DI+ AY KLA+KWHPD   KNP    EA+ RF++I EAY VLSDEN
Sbjct:     5 YYHILGVTKSASPDDIKKAYRKLALKWHPD---KNPNDKEEAEKRFKEISEAYEVLSDEN 61

Query:    74 KRSMYD 79
             KR  YD
Sbjct:    62 KRRDYD 67

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040718-45 dnajb6a "DnaJ (Hsp40) homolog, subfamily B, member 6a" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 36/66 (54%), Positives = 49/66 (74%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY +LG++K AS  DI+ AY KLA++WHPD   KNP    +A+ +F+++ EAY VLSD N
Sbjct:     4 YYQVLGVQKTASPDDIKKAYRKLALRWHPD---KNPDNKEDAEKKFKELSEAYEVLSDAN 60

Query:    74 KRSMYD 79
             KRS+YD
Sbjct:    61 KRSLYD 66

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0III6 DNAJB6 "DnaJ homolog subfamily B member 6" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 36/66 (54%), Positives = 47/66 (71%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  
Sbjct:     4 YYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAK 60

Query:    74 KRSMYD 79
             KR +YD
Sbjct:    61 KRDIYD 66

GO:0030018 "Z disc" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5F3Z5 DNAJB6 "DnaJ homolog subfamily B member 6" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 8.5e-15, P = 8.5e-15
 Identities = 37/66 (56%), Positives = 47/66 (71%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY +LG++K AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  
Sbjct:     4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAK 60

Query:    74 KRSMYD 79
             KR +YD
Sbjct:    61 KRDIYD 66

GO:0005634 "nucleus" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

TAIR|locus:1009023133 AT1G72416 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/90 (42%), Positives = 53/90 (58%)

Query:    15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
             YA+L +  + +  D+R +Y  L +KWHPDR  +      EAK +FQ IQ AYSVLSD NK
Sbjct:     7 YAVLDLNNECTQGDLRLSYKNLVLKWHPDRFLEEIE-KDEAKMKFQSIQRAYSVLSDSNK 65

Query:    75 RSMYDAGLYDPLEEEDEVPPKISSFCAITA 104
             R +YD G YD  ++E  +   I+    + A
Sbjct:    66 RLLYDVGAYDSDDDETGMADFINEMVTLMA 95

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|C9J2C4 DNAJB6 "DnaJ homolog subfamily B member 6" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/66 (54%), Positives = 47/66 (71%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  
Sbjct:     4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAK 60

Query:    74 KRSMYD 79
             KR +YD
Sbjct:    61 KRDIYD 66

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q4R7Y5 DNAJB6 "DnaJ homolog subfamily B member 6" [Macaca fascicularis (taxid:9541)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/66 (54%), Positives = 47/66 (71%)

Query:    14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
             YY +LG+++ AS  DI+ AY KLA+KWHPD   KNP    EA+ +F+Q+ EAY VLSD  
Sbjct:     4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAK 60

Query:    74 KRSMYD 79
             KR +YD
Sbjct:    61 KRDIYD 66

GO:0030018 "Z disc" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__4747__AT1G56300.1	annotation not avaliable (156 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_401762.1	annotation not avaliable (468 aa)			•						0.500
	fgenesh2_kg.7__3214__AT5G42020.1	annotation not avaliable (668 aa)			•						0.499
	scaffold_200029.1	annotation not avaliable (662 aa)			•						0.498
	fgenesh1_pm.C_scaffold_1003691	annotation not avaliable (606 aa)			•						0.498
	fgenesh1_pm.C_scaffold_1000734	annotation not avaliable (646 aa)			•						0.498
	scaffold_301435.1	annotation not avaliable (650 aa)			•						0.497
	fgenesh2_kg.1__1758__AT1G16030.1	annotation not avaliable (648 aa)			•						0.497
	scaffold_301074.1	annotation not avaliable (650 aa)			•						0.496
	fgenesh2_kg.6__163__AT5G02500.1	annotation not avaliable (650 aa)			•						0.496
	Al_scaffold_0006_155	annotation not avaliable (653 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	6e-27
pfam00226	63	pfam00226, DnaJ, DnaJ domain	9e-27
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-25
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-25
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-24
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-22
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-21
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-21
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-19
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-18
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-18
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-18
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	4e-18
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-17
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-17
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	1e-17
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-17
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-17
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-17
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-16
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-16
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-16
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-16
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	5e-16
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	6e-16
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-15
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-15
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-15
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	4e-15
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-15
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	5e-15
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	5e-15
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-14
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-13
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-12
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-12
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	8e-11
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-09
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	4e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	3e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	8e-04

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (253), Expect = 6e-27
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
           YY ILG+ KDAS  +I+ AY KLA K+HPDR+  +     EA+ +F++I EAY VLSD 
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK----EAEEKFKEINEAYEVLSDP 60

Query: 73 NKRSMYDAGLYDPLE 87
           KR+ YD   +   +
Sbjct: 61 EKRAAYDQFGHAGFK 75

Length = 371

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 93.4 bits (233), Expect = 9e-27
 Identities = 36/66 (54%), Positives = 48/66 (72%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ +DAS  +I+ AY KLA+K+HPD   KNPG    A+ +F++I EAY VLSD  
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPD---KNPG-DPAAEEKFKEINEAYEVLSDPE 57

Query: 74 KRSMYD 79
          KR++YD
Sbjct: 58 KRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 96.4 bits (241), Expect = 4e-25
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ ++AS  +I+ AY KLAMK+HPDR   NPG   EA+ +F++I+EAY VLSD  
Sbjct: 6  YYEVLGVSRNASEDEIKKAYRKLAMKYHPDR---NPGDK-EAEEKFKEIKEAYEVLSDPQ 61

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 62 KRAAYD 67

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 95.7 bits (239), Expect = 5e-25
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 5/67 (7%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
           YY ILG+ KDAS  +I+ AY KLA K+HPDR+ K+     EA+ +F++I EAY VLSD 
Sbjct: 1  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDK----EAEEKFKEINEAYEVLSDP 55

Query: 73 NKRSMYD 79
           KR+ YD
Sbjct: 56 EKRAQYD 62

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 85.7 bits (213), Expect = 7e-24
 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 3/62 (4%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
           YY ILG+ +DAS  +I+ AY KLA+K+HPD   KNPG   EA+ +F++I EAY VLSD 
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPD---KNPGDKEEAEEKFKEINEAYEVLSDP 58

Query: 73 NK 74
           K
Sbjct: 59 EK 60

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 81.4 bits (202), Expect = 4e-22
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 4/58 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          YY ILG+  DAS  +I+ AY KLA+K+HPD++  +P    EA+ +F++I EAY VLSD
Sbjct: 2  YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDP----EAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++A+  +I+ AY +L  +WHPDR   +P    EA+ +F++IQEAY VLSD  
Sbjct: 6  YYEILGVSRNATQEEIKRAYKRLVKEWHPDR---HPENRKEAEQKFKEIQEAYEVLSDPQ 62

Query: 74 KRSMYD 79
          KR+MYD
Sbjct: 63 KRAMYD 68

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 9/81 (11%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ KDAS  DI+ AY KLAMK+HPD++ K P     A+ +F++I EAY+VLSD  
Sbjct: 7  YYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPD----AEEKFKEISEAYAVLSDAE 61

Query: 74 KRSMYD----AGLYDPLEEED 90
          KR+ YD    AG+ +    ED
Sbjct: 62 KRAQYDRFGHAGIDNQYSAED 82

Length = 377

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 6/75 (8%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ ++AS ++I+ AY KLA + HPD    NP    EA+ +F++I  AY VLSD  
Sbjct: 5  YYGLLGVSRNASDAEIKRAYRKLARELHPD---VNPD--EEAQEKFKEISVAYEVLSDPE 59

Query: 74 KRSMYDAGLYDPLEE 88
          KR + D G  DPLE 
Sbjct: 60 KRRIVDLG-GDPLES 73

Length = 378

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K AS  +I+ AY KLA+K+HPD   KNPG A EA+ RF+++ EAY VLSD  
Sbjct: 3  YYTILGVSKTASPEEIKKAYRKLAVKYHPD---KNPGDA-EAEKRFKEVSEAYEVLSDAQ 58

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 59 KRESYD 64

Length = 391

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ +DAS  +I+ +Y KLAMK+HPDR   NPG   EA+  F++  EAY VLSD  
Sbjct: 6  YYEILGVTRDASEEEIKKSYRKLAMKYHPDR---NPG-DKEAEELFKEAAEAYEVLSDPK 61

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 62 KRGIYD 67

Length = 366

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++AS  DI+ A+ +LA KWHPD    +PG   EA+ +F++I EAY VLSD  
Sbjct: 5  YYKILGVDRNASQEDIKKAFRELAKKWHPD---LHPGNKAEAEEKFKEISEAYEVLSDPQ 61

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 62 KRRQYD 67

Length = 365

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 77.5 bits (191), Expect = 4e-18
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ K AS  +I+ A+ KLA+K+HPD+   N G   EA+ +F++I EAY VLSD  
Sbjct: 6  YYEVLGLEKGASDDEIKKAFRKLAIKYHPDK---NKGNK-EAEEKFKEINEAYQVLSDPQ 61

Query: 74 KRSMYD 79
          K++ YD
Sbjct: 62 KKAQYD 67

Length = 380

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ K AS  +I+ AY KL+ K+HPD + K  G    A  +F++I EAY VLSD+ 
Sbjct: 6  YYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEG----ADEKFKEISEAYEVLSDDQ 60

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAQYD 66

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY  LG+ KDAS  +I+ AY KL+ K+HPD + K PG    A+ +++++QEAY  LSD  
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPG----AEEKYKEVQEAYETLSDPQ 60

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAAYD 66

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ KDA+ ++I+ AY KLA ++HPD +  +      A+ RF++I EAY VLSDE 
Sbjct: 11 YYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAK----AEERFKEISEAYDVLSDEK 66

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 67 KRKEYD 72

Length = 389

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 75.9 bits (187), Expect = 1e-17
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ +DAS  +I+ AY KLA+++HPDR+  NP    EA+ +F++  EAY VL D  
Sbjct: 6  YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAE 61

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 62 KRARYD 67

Length = 373

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          + YY +LG+ + AS  +I+SAY KLA+K+HPDR+ K  G A     +F QI EAY+VLSD
Sbjct: 2  MDYYELLGVSRTASADEIKSAYRKLALKYHPDRN-KEKGAAE----KFAQINEAYAVLSD 56

Query: 72 ENKRSMYD 79
            KR+ YD
Sbjct: 57 AEKRAHYD 64

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 74.8 bits (184), Expect = 3e-17
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++A+  +I+ AY +LA K+HPD + KNP    EA+ +F++I EAY VLSD  
Sbjct: 5  YYEILGVSRNATQEEIKKAYRRLARKYHPDFN-KNP----EAEEKFKEINEAYQVLSDPE 59

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 60 KRKLYD 65

Length = 382

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++A+  +I+ AY +LA K+HPD    NPG   EA+ +F++I EAY +LSD  
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPD---LNPG-DKEAEQKFKEINEAYEILSDPQ 62

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 63 KRAQYD 68

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 10/81 (12%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ ++A   +I+ AY KLA K+HPD S +       A+ +F++I EAY+VLSD+ 
Sbjct: 7  YYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE-----GAEEKFKEISEAYAVLSDDE 61

Query: 74 KRSMYD----AGLYDPLEEED 90
          KR  YD    AG+ D   +ED
Sbjct: 62 KRQRYDQFGHAGM-DGFSQED 81

Length = 378

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 71.4 bits (174), Expect = 2e-16
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70
           L YY ILG+  +AS  +I+ AY KLA+K+HPDR+  +P VA E   +F++I EAY +LS
Sbjct: 5  LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEE---KFKEINEAYEILS 61

Query: 71 DENKRSMYDAGLYDP 85
          D  +R+ YD    D 
Sbjct: 62 DPERRAEYDKIGADN 76

Length = 237

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ + A   +I+ AY KLA+K+HPD   KNP    EA+  F+++ EAY VLS+++
Sbjct: 5  YYEVLGVSRSADKDEIKKAYRKLALKYHPD---KNPD-NKEAEEHFKEVNEAYEVLSNDD 60

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 61 KRRRYD 66

Length = 397

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 71.6 bits (175), Expect = 5e-16
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70
          S  YY ILG+ K AS +D++ AY KLA ++HPD +      A +A+ +F++I  AY VL 
Sbjct: 2  SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-----AKDAEKKFKEINAAYDVLK 56

Query: 71 DENKRSMYDAGLYDPLEEE 89
          DE KR+ YD   +D  + +
Sbjct: 57 DEQKRAAYDRFGHDAFQNQ 75

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 71.3 bits (175), Expect = 6e-16
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          +Y  LG+  DAS  +I+ AY KLA + HPD    NPG    A+ RF+ + EA+ VLSD  
Sbjct: 11 FYKELGVSSDASAEEIKKAYRKLARELHPDA---NPGDP-AAEERFKAVSEAHDVLSDPA 66

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 67 KRKEYD 72

Length = 392

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ K A+  +I+ AY K A+++HPD   KNPG   EA+ +F++  EAY VLSD +
Sbjct: 7  YYEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPG-DKEAEEKFKEAAEAYDVLSDPD 62

Query: 74 KRSMYD 79
          KRS YD
Sbjct: 63 KRSRYD 68

Length = 386

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 68.8 bits (168), Expect = 3e-15
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YYAILG+ K+AS  +I+ A+ KLA K+HPD + K+PG    A+ +F++I EAY+VLSD  
Sbjct: 6  YYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPG----AEEKFKEINEAYTVLSDPE 60

Query: 74 KRSMYDAGLYDPLEEEDEVPP 94
          KR +YD           + PP
Sbjct: 61 KRRIYDTYGTTAASAGWQGPP 81

Length = 291

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (168), Expect = 4e-15
 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K AS  +I+ AY K+A+K+HPD++  N     EA+  F++  EAY VL D+N
Sbjct: 5  YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK----EAESIFKEATEAYEVLIDDN 60

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAQYD 66

Length = 365

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 69.1 bits (168), Expect = 4e-15
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LGI +DA   +I+ A+ KLA K+HPDR+      A +A   F +I EA  VLS+  
Sbjct: 4  YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-----APDAASIFAEINEANDVLSNPK 58

Query: 74 KRSMYDAGLYDPLEEED 90
          KR+ YD   +D ++ ED
Sbjct: 59 KRANYDKYGHDGVDRED 75

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (168), Expect = 4e-15
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 4/68 (5%)

Query: 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
          LSYY IL + K ++   I+ +Y KLA+K+HPDR+A +     EA+ +F+ I EAY VLSD
Sbjct: 3  LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSD 58

Query: 72 ENKRSMYD 79
          E KR++YD
Sbjct: 59 EKKRALYD 66

Length = 369

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 9/73 (12%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ +DA   +++ AY +LA K+HPD + K PG    A+ RF++I  AY VLSD  
Sbjct: 5  YYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPG----AEDRFKEINRAYEVLSDPE 59

Query: 74 KRSMYD----AGL 82
           R+ YD    AG+
Sbjct: 60 TRARYDQFGEAGV 72

Length = 374

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 68.3 bits (167), Expect = 5e-15
 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YYAI+G++       I++AY +LA K+HPD S +      +A+ RF+++ EA+ VLSDE 
Sbjct: 6  YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-----DAEARFKEVAEAWEVLSDEQ 60

Query: 74 KRSMYD 79
          +R+ YD
Sbjct: 61 RRAEYD 66

Length = 306

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 15/84 (17%)

Query: 3  GGGGSNGGSLS-------YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEA 55
           GGG +GG           Y +L + KD + S+I+ AY KLA+K HPD+        G  
Sbjct: 12 PGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK--------GGD 63

Query: 56 KCRFQQIQEAYSVLSDENKRSMYD 79
            +F++I  AY VLSD  KR +YD
Sbjct: 64 PEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 4/67 (5%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
          SYY ILG+ K A+  +I+SAY KLA+K+HPD++  N     E++ +F++  EAY +L D 
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK----ESEEKFKEATEAYEILRDP 60

Query: 73 NKRSMYD 79
           KR  YD
Sbjct: 61 KKRQAYD 67

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ K AS  +IR AY KLA ++HPD + K+P     A  +  +I EA  VL D++
Sbjct: 6  YYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPD----AHDKMVEINEAADVLLDKD 60

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 61 KRKQYD 66

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG+ ++AS  +++ AY KLA K+HPD +      A +A+ +F++++EAY  LSD  
Sbjct: 6  YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-----APDAEDKFKEVKEAYDTLSDPQ 60

Query: 74 KRSMYDA-GLYDP 85
          K++ YD  G  DP
Sbjct: 61 KKAHYDQFGHTDP 73

Length = 371

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 56.9 bits (137), Expect = 8e-11
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 15  YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDEN 73
           Y ILGI +D S  DI+  Y  L+MK+HPD++      +  E + +++ I +AY +L+D+ 
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 74  KRSMY 78
           +R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 14  YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           +Y ILG+  +A   +I   Y KLA  ++P + + N G       +F++I EAY +L D +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFH-----KFKKINEAYQILGDID 629

Query: 74  KRSMYDAGLYDPLEEEDEVPPKI 96
           K+ MY+   YD ++  + + P I
Sbjct: 630 KKKMYNKFGYDGIKGVNFIHPSI 652

Length = 1136

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 8   NGGSLSYYAILGI---RKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCR--FQQI 62
           N   +  YA+LG+   R  A    I  A+ K   K+HPD++A      G   C   F+ I
Sbjct: 39  NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTA----AGGNKGCDEFFKLI 94

Query: 63  QEAYSVLSDENKRSMYDAGLYDPLEEEDEVPPKI 96
           Q+A  VL D   R  YD+  +D     D  PP+I
Sbjct: 95  QKAREVLGDRKLRLQYDSNDFD----ADVPPPRI 124

Length = 379

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 15  YAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNPGVAGE----AKCRFQQIQEAY 66
           Y +LG+ +     +I+ AY KL  + HPD+  AK  G+  E    AK + Q+IQ AY
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK--GLPPEMMEMAKEKAQEIQAAY 257

Length = 267

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 15  YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE----AKCRFQQIQEAY 66
             +LG+   A    I+ AY KL  + HPD++A   G+  E     K + Q+IQEAY
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAK-GLKLEFIEKLKEKLQEIQEAY 170

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.95
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PRK14288	369	chaperone protein DnaJ; Provisional	99.89
PRK14296	372	chaperone protein DnaJ; Provisional	99.89
PRK14279	392	chaperone protein DnaJ; Provisional	99.88
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.87
PRK14286	372	chaperone protein DnaJ; Provisional	99.87
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.87
PRK14287	371	chaperone protein DnaJ; Provisional	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.86
PRK14282	369	chaperone protein DnaJ; Provisional	99.86
PRK14276	380	chaperone protein DnaJ; Provisional	99.86
PRK14285	365	chaperone protein DnaJ; Provisional	99.86
PRK14294	366	chaperone protein DnaJ; Provisional	99.86
PRK14299	291	chaperone protein DnaJ; Provisional	99.85
PRK14301	373	chaperone protein DnaJ; Provisional	99.85
PRK14277	386	chaperone protein DnaJ; Provisional	99.85
PRK14283	378	chaperone protein DnaJ; Provisional	99.85
PRK14297	380	chaperone protein DnaJ; Provisional	99.85
PRK14291	382	chaperone protein DnaJ; Provisional	99.85
PRK14295	389	chaperone protein DnaJ; Provisional	99.85
PRK14280	376	chaperone protein DnaJ; Provisional	99.85
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PRK14298	377	chaperone protein DnaJ; Provisional	99.85
PRK10767	371	chaperone protein DnaJ; Provisional	99.84
PRK14284	391	chaperone protein DnaJ; Provisional	99.84
PRK14278	378	chaperone protein DnaJ; Provisional	99.84
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.84
PRK14281	397	chaperone protein DnaJ; Provisional	99.84
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14289	386	chaperone protein DnaJ; Provisional	99.82
PRK14290	365	chaperone protein DnaJ; Provisional	99.82
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.82
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.82
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.81
PRK14300	372	chaperone protein DnaJ; Provisional	99.81
PRK14292	371	chaperone protein DnaJ; Provisional	99.81
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PRK14293	374	chaperone protein DnaJ; Provisional	99.81
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.8
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.78
PRK05014	171	hscB co-chaperone HscB; Provisional	99.76
PRK01356	166	hscB co-chaperone HscB; Provisional	99.76
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PHA03102	153	Small T antigen; Reviewed	99.75
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.74
PRK00294	173	hscB co-chaperone HscB; Provisional	99.74
PRK03578	176	hscB co-chaperone HscB; Provisional	99.73
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.66
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.66
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.61
PTZ00100	116	DnaJ chaperone protein; Provisional	99.6
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.59
PRK01773	173	hscB co-chaperone HscB; Provisional	99.58
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.53
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.49
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.47
PHA02624	647	large T antigen; Provisional	99.46
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.44
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.41
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.35
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.87
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.79
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.62
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.48
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.77
KOG0431	453	consensus Auxilin-like protein and related protein	97.73
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.65
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.67
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	95.99
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	94.89
PF13446	62	RPT: A repeated domain in UCH-protein	94.66
KOG0724	335	consensus Zuotin and related molecular chaperones	93.17

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1e-27  Score=178.11  Aligned_cols=75  Identities=47%  Similarity=0.704  Sum_probs=68.7

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      +...|||+||||+++||.+|||+|||+|+++||||+++.++    .|+++|++|++||+||+||++|+.||+++.....
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            35689999999999999999999999999999999987544    8999999999999999999999999998866554

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.5e-26  Score=168.70  Aligned_cols=75  Identities=41%  Similarity=0.713  Sum_probs=70.2

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      ...+|||+||||+++|+..|||+|||+|++++||||++.+|    .|.+.|+.|+.||+||+||.+|+.||..+.+...
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            35689999999999999999999999999999999999887    8999999999999999999999999998866655

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=1.7e-23  Score=156.87  Aligned_cols=70  Identities=49%  Similarity=0.780  Sum_probs=64.0

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++||.++||+|||+|+++||||+++.++    .+.++|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            379999999999999999999999999999999986443    6889999999999999999999999997654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=4.4e-23  Score=154.87  Aligned_cols=69  Identities=42%  Similarity=0.638  Sum_probs=63.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. +    .+.++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~----~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P----DAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----hHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            5799999999999999999999999999999999753 2    6889999999999999999999999997643

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.1e-22  Score=153.57  Aligned_cols=69  Identities=42%  Similarity=0.639  Sum_probs=63.7

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ...|||+||||+++|+.++||+|||+|+++||||+++.++    .+.++|++|++||+||+||.+|+.||+++
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            3579999999999999999999999999999999986443    68899999999999999999999999965

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.4e-22  Score=148.96  Aligned_cols=72  Identities=43%  Similarity=0.711  Sum_probs=65.5

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE   88 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~   88 (111)
                      ....+|+||||+++||.+|||+|||+|+++|||||++       .+.++|++|..||+||+||++|..||+.+.+....
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~-------~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~   73 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNP-------DAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG   73 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence            3568999999999999999999999999999999975       47899999999999999999999999988666543

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.7e-22  Score=151.69  Aligned_cols=71  Identities=44%  Similarity=0.705  Sum_probs=64.3

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ...|||+||||+++|+.++||+|||+++++||||+++.++    .+.++|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            3479999999999999999999999999999999976433    6889999999999999999999999997643

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.87  E-value=2.5e-22  Score=116.20  Aligned_cols=64  Identities=42%  Similarity=0.777  Sum_probs=60.0

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812           13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD   79 (111)
Q Consensus        13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd   79 (111)
                      |||+||||+++++.++||++|+++++.+|||+++...   ..+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987653   468999999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.5e-22  Score=149.96  Aligned_cols=69  Identities=39%  Similarity=0.731  Sum_probs=63.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++. +    .+.++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-P----DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            4799999999999999999999999999999999752 2    6788999999999999999999999997654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.86  E-value=4.4e-22  Score=151.29  Aligned_cols=67  Identities=40%  Similarity=0.677  Sum_probs=61.1

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ...|||+||||+++||.++||+|||+|+++||||+++        ..++|++|++||+||+||.+|+.||.++..
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--------hHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            4679999999999999999999999999999999963        137999999999999999999999997644

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=7.3e-22  Score=148.16  Aligned_cols=71  Identities=48%  Similarity=0.838  Sum_probs=63.9

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+   ...+.++|++|++||+||+||.+|+.||.+...
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            57999999999999999999999999999999997543   226889999999999999999999999997643

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1e-21  Score=147.82  Aligned_cols=69  Identities=43%  Similarity=0.714  Sum_probs=63.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++||.++||+|||+|+++||||+++. +    .+.++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-P----GAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            4799999999999999999999999999999999763 2    5788999999999999999999999997643

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.1e-21  Score=146.91  Aligned_cols=69  Identities=46%  Similarity=0.732  Sum_probs=63.4

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++||.++||+|||+|+++||||+++.++    .+.++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            69999999999999999999999999999999976443    6888999999999999999999999997643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.3e-21  Score=146.57  Aligned_cols=71  Identities=46%  Similarity=0.734  Sum_probs=64.6

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ...|||+||||+++|+.++||+|||+|+++||||+++.++    .+.+.|++|++||+||+||.+|+.||+++..
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            3579999999999999999999999999999999986443    6788999999999999999999999997654

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.6e-21  Score=142.35  Aligned_cols=69  Identities=48%  Similarity=0.758  Sum_probs=63.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++||.++||+|||++++++|||+++. +    .+.++|++|++||++|+||.+|+.||..+..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-P----GAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4799999999999999999999999999999999752 2    6888999999999999999999999996643

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.5e-21  Score=146.57  Aligned_cols=70  Identities=46%  Similarity=0.782  Sum_probs=64.0

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++.++    .+.++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            479999999999999999999999999999999986442    6888999999999999999999999997643

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.1e-21  Score=146.39  Aligned_cols=70  Identities=41%  Similarity=0.707  Sum_probs=63.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++.++    .+.++|++|++||+||+||.+|+.||.++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            479999999999999999999999999999999986443    6889999999999999999999999996643

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2e-21  Score=146.13  Aligned_cols=69  Identities=43%  Similarity=0.703  Sum_probs=63.4

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++. +    .+.++|++|++||++|+||.+|+.||+++.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-E----GAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            36799999999999999999999999999999999753 2    688999999999999999999999998654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.7e-21  Score=146.58  Aligned_cols=70  Identities=46%  Similarity=0.735  Sum_probs=64.0

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++.++    .+.++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            469999999999999999999999999999999986443    6889999999999999999999999997643

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.2e-21  Score=146.15  Aligned_cols=69  Identities=43%  Similarity=0.725  Sum_probs=63.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++..     .+.++|++|++||+||+||.+|+.||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            36999999999999999999999999999999998642     6788999999999999999999999997654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.3e-21  Score=146.29  Aligned_cols=66  Identities=48%  Similarity=0.829  Sum_probs=61.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA   80 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~   80 (111)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.++    .+.++|++|++||+||+||.+|+.||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            469999999999999999999999999999999976443    688999999999999999999999998

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.8e-21  Score=145.29  Aligned_cols=69  Identities=43%  Similarity=0.702  Sum_probs=63.2

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..     .+.++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-----GADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            47999999999999999999999999999999997532     5889999999999999999999999997643

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.2e-21  Score=138.14  Aligned_cols=68  Identities=46%  Similarity=0.814  Sum_probs=64.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ..++|+||||+++|+.++||++||++++++|||+++.+|    ++.++|++||+||++|+||.+|..||.++
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g   97 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEYG   97 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence            568999999999999999999999999999999998876    78999999999999999999999999975

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.3e-21  Score=145.81  Aligned_cols=69  Identities=51%  Similarity=0.816  Sum_probs=63.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++..     .+.++|++|++||++|+||.+|+.||+++..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-----DAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-----hHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            46999999999999999999999999999999997532     6789999999999999999999999997644

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.1e-21  Score=144.14  Aligned_cols=70  Identities=47%  Similarity=0.779  Sum_probs=63.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.++||+|||+++++||||+++.++    .+.+.|++|++||++|+||.+|+.||.+...
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            579999999999999999999999999999999986443    5889999999999999999999999987643

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.8e-21  Score=145.18  Aligned_cols=69  Identities=49%  Similarity=0.811  Sum_probs=63.1

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++|+.++||+|||+++++||||+++.++    .+.++|++|++||++|+||.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            48999999999999999999999999999999986543    6889999999999999999999999987643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.4e-21  Score=144.95  Aligned_cols=67  Identities=43%  Similarity=0.693  Sum_probs=62.2

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      .|||+||||+++|+.++||+|||+++++||||+++.     ..+.++|++|++||+||+||.+|+.||.++.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-----EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-----HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence            699999999999999999999999999999999762     2688999999999999999999999998764

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.84  E-value=1.3e-20  Score=152.13  Aligned_cols=82  Identities=32%  Similarity=0.553  Sum_probs=70.8

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE   88 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~   88 (111)
                      ....+||+||||+++|+..+||+|||+++++||||+++.+     .+.++|+.|++||+||+||.+|+.||.++......
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-----EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            3467999999999999999999999999999999998643     57789999999999999999999999988766555


Q ss_pred             CCCCCch
Q 033812           89 EDEVPPK   95 (111)
Q Consensus        89 ~~~~~~~   95 (111)
                      ....+|.
T Consensus       645 ~~~iDP~  651 (1136)
T PTZ00341        645 VNFIHPS  651 (1136)
T ss_pred             CCccCHH
Confidence            4444443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.9e-21  Score=144.43  Aligned_cols=69  Identities=42%  Similarity=0.751  Sum_probs=63.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++|+.++||+|||+++++||||+++.++    .+.+.|++|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            69999999999999999999999999999999986442    6789999999999999999999999997653

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=9e-21  Score=143.18  Aligned_cols=78  Identities=38%  Similarity=0.622  Sum_probs=71.1

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      ..+.+||.+|+|+++||.+|||+|||++++.|||||+. ++..++.|++.|+.|..||+||+||.+|..||..+.....
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            34569999999999999999999999999999999985 4566779999999999999999999999999998877765

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.1e-20  Score=137.46  Aligned_cols=75  Identities=40%  Similarity=0.709  Sum_probs=69.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE   89 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~~   89 (111)
                      ..|||+||||+..++..+|++|||..++++||||++.+|    .+.+.|+.+.+||+||+|+..|..||..+.......
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            679999999999999999999999999999999999888    699999999999999999999999999886665443

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.7e-20  Score=136.73  Aligned_cols=72  Identities=43%  Similarity=0.729  Sum_probs=65.8

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ....|||+||||+++|+..|||+||++|+++||||.+...     .+.++|++|.+||++|+|+++|..||..+...
T Consensus        40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-----EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3344999999999999999999999999999999998655     79999999999999999999999999977654

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2e-20  Score=141.04  Aligned_cols=70  Identities=41%  Similarity=0.704  Sum_probs=64.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ..|||+||||+++|+.+|||+|||+++++||||+++.++    .+.++|++|++||++|+||.+|+.||.+...
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            579999999999999999999999999999999986543    6889999999999999999999999996543

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.8e-20  Score=139.45  Aligned_cols=70  Identities=47%  Similarity=0.756  Sum_probs=63.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++|+.++||+|||+|++++|||+++.+   ...+.++|++|++||++|+||.+|+.||..+..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN---KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            6999999999999999999999999999999997533   236889999999999999999999999996643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.6e-20  Score=139.66  Aligned_cols=70  Identities=41%  Similarity=0.719  Sum_probs=63.8

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   81 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~   81 (111)
                      ...+.||+||||.++|+..+||++||+|+++||||+++..   -+.+.++|+.|+.||+|||||..|+.||..
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~---ieeat~~F~~i~aAYeVLSdp~eR~wyd~h   74 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR---IEEATQQFQLIQAAYEVLSDPQERAWYDSH   74 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc---HHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence            4567899999999999999999999999999999996543   358999999999999999999999999973

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.82  E-value=3.1e-20  Score=138.63  Aligned_cols=67  Identities=52%  Similarity=0.806  Sum_probs=61.4

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      |||+||||+++|+.++||+|||+++++||||+++ .+    .+.++|++|++||++|+|+.+|+.||.++..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DK----EAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-Cc----cHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            7999999999999999999999999999999975 22    5788999999999999999999999996644

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.81  E-value=3.7e-20  Score=135.94  Aligned_cols=67  Identities=42%  Similarity=0.769  Sum_probs=61.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ..|||+||||++.|+.++||+|||++++++|||+++..     .+.+.|++|++||++|+||.+|+.||...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-----DAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            36999999999999999999999999999999996532     68899999999999999999999999854

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.6e-20  Score=139.13  Aligned_cols=67  Identities=45%  Similarity=0.724  Sum_probs=61.7

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      .|||+||||+++||.++||+|||+++++||||+++. +    .+.++|++|++||++|+|+.+|+.||.++.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-K----DAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            699999999999999999999999999999999752 2    578899999999999999999999999654

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.6e-20  Score=138.50  Aligned_cols=68  Identities=49%  Similarity=0.790  Sum_probs=62.6

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++|+.++||+|||++++++|||+++..     .+.++|++|++||++|+||.+|+.||..+..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-----~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-----GAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----hHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            5899999999999999999999999999999998532     6889999999999999999999999997643

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.5e-20  Score=128.75  Aligned_cols=73  Identities=44%  Similarity=0.688  Sum_probs=66.6

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ..|+|+||||.++|+..+|++||+++++++|||+++  ......+.+.|+.|++||+||+|.++|+.||..+.-.
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~--eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH--EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch--hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            349999999999999999999999999999999984  4445689999999999999999999999999977655

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=7.1e-20  Score=137.63  Aligned_cols=68  Identities=41%  Similarity=0.682  Sum_probs=62.3

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      .|||+||||+++|+.++||+|||++++++|||+++..     .+.++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-----GAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            6999999999999999999999999999999997532     5788999999999999999999999986643

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.80  E-value=2.1e-19  Score=102.46  Aligned_cols=59  Identities=49%  Similarity=0.896  Sum_probs=53.8

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCch
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN   73 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~   73 (111)
                      .|||+||||+++++.++||++|+++++.+|||+++..   ...+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999998642   3478899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.78  E-value=6.5e-19  Score=98.67  Aligned_cols=55  Identities=53%  Similarity=0.911  Sum_probs=51.0

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCC
Q 033812           13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   71 (111)
Q Consensus        13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d   71 (111)
                      |||+||||+++++.++||++|+++++++|||+.+..    ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD----PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999998643    3789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.76  E-value=3.1e-18  Score=116.61  Aligned_cols=75  Identities=24%  Similarity=0.337  Sum_probs=63.7

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      .|||++|||++.  ++..+|+++|+++++++|||++...+. .+..+.+.+..|++||++|+||.+|+.|+..+.+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~   78 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFD   78 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCc
Confidence            489999999996  678999999999999999999865432 334577899999999999999999999998766443

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.76  E-value=3.2e-18  Score=116.04  Aligned_cols=74  Identities=23%  Similarity=0.406  Sum_probs=62.7

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      .|||++|||++.  ++..+|+++|+++++++|||++.. ...+..+.+.+..|++||+||+||.+|+.|...+.+..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~   77 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNIN   77 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCC
Confidence            589999999996  689999999999999999999753 22233455678999999999999999999998776543

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.2e-18  Score=119.54  Aligned_cols=72  Identities=29%  Similarity=0.525  Sum_probs=65.2

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ......|+|+||||+++++..|||+|||+|++++||||++..    +..++.|..|++||+.|+|+..|..|...+
T Consensus        94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG  165 (230)
T KOG0721|consen   94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYG  165 (230)
T ss_pred             HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence            345678999999999999999999999999999999998654    277888999999999999999999999876

>PHA03102 Small T antigen; Reviewed

Probab=99.75  E-value=2.4e-18  Score=114.91  Aligned_cols=69  Identities=20%  Similarity=0.389  Sum_probs=61.4

Q ss_pred             cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812           12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE   88 (111)
Q Consensus        12 ~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~   88 (111)
                      ..+|+||||+++|  |.++||+|||++++++|||+++        ..+.|++|++||++|+|+..|..||..+......
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~   75 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE   75 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence            4689999999999  9999999999999999999953        3469999999999999999999999987665443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.74  E-value=7e-18  Score=133.97  Aligned_cols=70  Identities=43%  Similarity=0.663  Sum_probs=63.7

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      .|||+||||+++|+.++||++||++++++|||+++..     .+.++|++|++||++|+||.+|+.||.++....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~-----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-----DAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            5899999999999999999999999999999997642     677899999999999999999999999775544

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.74  E-value=1e-17  Score=114.17  Aligned_cols=78  Identities=26%  Similarity=0.374  Sum_probs=66.2

Q ss_pred             CCccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            9 GGSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ++..|||++|||++.  .+..+|+++||++++++|||++...+. .+..+.+.+..||+||+||+||.+|+.|+..+.+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~   80 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH   80 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            467899999999997  567999999999999999999865432 23457788999999999999999999999877654


Q ss_pred             C
Q 033812           86 L   86 (111)
Q Consensus        86 ~   86 (111)
                      .
T Consensus        81 ~   81 (173)
T PRK00294         81 E   81 (173)
T ss_pred             C
Confidence            3

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.73  E-value=2.5e-17  Score=112.61  Aligned_cols=77  Identities=23%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      ...|||+||||++.  ++..+|+++|+++++++|||+++..+. .+..+.+.+..||+||++|+||.+|..|...+.+..
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~   83 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD   83 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence            45799999999995  578999999999999999999865432 223456678999999999999999999998665543

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.1e-17  Score=115.08  Aligned_cols=70  Identities=46%  Similarity=0.830  Sum_probs=64.3

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   81 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~   81 (111)
                      ....+||+||||+++|+..+|+++||++++++|||+++.++.   .+.+.|..|++||++|+|+..|..||..
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            356799999999999999999999999999999999876642   4889999999999999999999999984

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.66  E-value=7.9e-17  Score=119.29  Aligned_cols=73  Identities=42%  Similarity=0.702  Sum_probs=66.6

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ...+|||+||||.++|+..+|.+|||+++.+||||-+. +.+++..++.+|..|..|-+||+||++|+.+|...
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq-dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe  463 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ-DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE  463 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc-CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence            45789999999999999999999999999999999875 45556689999999999999999999999999854

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.1e-16  Score=121.01  Aligned_cols=71  Identities=35%  Similarity=0.539  Sum_probs=65.7

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      +.+|+|.+|||+++++.++||+.||+++...||||+..+     .|.+.|+.++.||++|+|+.+|..||..+...
T Consensus       233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-----RAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-----hHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            368999999999999999999999999999999999744     89999999999999999999999999977543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=4e-16  Score=110.91  Aligned_cols=76  Identities=38%  Similarity=0.635  Sum_probs=67.8

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      |.-++..|.|+||||.++++..+|.+|||+|++++|||++...     ...+.|..|..||++|.|...|..||-.+..+
T Consensus        27 gLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-----e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   27 GLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-----ESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             hhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-----hhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            4456788999999999999999999999999999999998755     45589999999999999999999999877654


Q ss_pred             C
Q 033812           86 L   86 (111)
Q Consensus        86 ~   86 (111)
                      .
T Consensus       102 d  102 (329)
T KOG0722|consen  102 D  102 (329)
T ss_pred             h
Confidence            3

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.60  E-value=1.4e-15  Score=97.18  Aligned_cols=60  Identities=28%  Similarity=0.324  Sum_probs=52.5

Q ss_pred             CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhC
Q 033812            3 GGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS   70 (111)
Q Consensus         3 ~~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~   70 (111)
                      +|....+...++|+||||+++++.++||++||++++++|||+.+        ..+.|++|++||++|.
T Consensus        56 ~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--------s~~~~~kIneAyevL~  115 (116)
T PTZ00100         56 KGFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--------STYIASKVNEAKDLLL  115 (116)
T ss_pred             ccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHh
Confidence            35566777889999999999999999999999999999999842        3467889999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.59  E-value=1.9e-15  Score=109.23  Aligned_cols=63  Identities=30%  Similarity=0.478  Sum_probs=55.1

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHhCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSD   71 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL~d   71 (111)
                      ....++|+||||++++|.++||++||+++++||||++..   ++...+.+.++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            455799999999999999999999999999999999743   334445789999999999999985

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.58  E-value=1.4e-14  Score=98.72  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCC-cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      .|||++|||++.  .+...++++|+.+.+.+|||++... +..+..+.+....||+||.+|+||.+|+.|-..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999996  7899999999999999999998654 33334567788899999999999999999998776

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=9.1e-15  Score=109.92  Aligned_cols=71  Identities=42%  Similarity=0.734  Sum_probs=65.1

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ....|||.|||+.+.++..+||++||++++.+|||++..+   +.+++..|+++-+||.+|+||.+|..||...
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            3568999999999999999999999999999999997655   4589999999999999999999999999844

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.49  E-value=3.7e-14  Score=107.55  Aligned_cols=73  Identities=33%  Similarity=0.560  Sum_probs=66.8

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      +..|+|||||++.+++..+||++||+|+.++||||.+. .+..++..++.+.+|++||..|.|...|..|-..+
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG  169 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG  169 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence            45799999999999999999999999999999999865 34667789999999999999999999999999875

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.7e-14  Score=101.05  Aligned_cols=70  Identities=47%  Similarity=0.750  Sum_probs=62.1

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ..|+|.||||.+.|+..+|++||+++++++|||+++.+   ...+..+|++|.+||++|+|+.+|..||....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46899999999999999999999999999999996543   23455589999999999999999999999875

>PHA02624 large T antigen; Provisional

Probab=99.46  E-value=6.8e-14  Score=109.94  Aligned_cols=60  Identities=22%  Similarity=0.417  Sum_probs=55.6

Q ss_pred             ccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812           11 SLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   78 (111)
Q Consensus        11 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   78 (111)
                      ..++|++|||+++|  +.++||+|||++++++|||+.        +..+.|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg--------Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG--------GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46899999999999  999999999999999999994        2357899999999999999999999

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.44  E-value=7.7e-13  Score=89.03  Aligned_cols=63  Identities=22%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCc-CChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           24 ASFSDIRSAYHKLAMKWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        24 as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      .+..+|+++|+++++++|||++...+ ..+..+.+.+..|++||++|+||.+|+.|...+.+..
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~   66 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGID   66 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence            46789999999999999999975532 2334577899999999999999999999999876543

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=5.1e-13  Score=92.17  Aligned_cols=70  Identities=29%  Similarity=0.497  Sum_probs=62.9

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   78 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   78 (111)
                      ||+.-+.|+|+||.|.|..+.++||+.||+++...|||+++.+   ++.|...|-.|.+||..|.|+..|..-
T Consensus        47 gstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd---~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   47 GSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD---AERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             CccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc---HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            6788899999999999999999999999999999999997655   348999999999999999999865443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.3e-12  Score=92.73  Aligned_cols=78  Identities=33%  Similarity=0.428  Sum_probs=64.9

Q ss_pred             CCCCCccCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            6 GSNGGSLSYYAILGIRK---DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      -.+++..|+|.+|||+.   .+++.+|.++.++.+.+||||+.....  .....+.|+.|++||+||+|+.+|..||.--
T Consensus        37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            34677899999999986   688999999999999999999973211  1167789999999999999999999999855


Q ss_pred             CCC
Q 033812           83 YDP   85 (111)
Q Consensus        83 ~~~   85 (111)
                      .+.
T Consensus       115 f~a  117 (379)
T COG5269         115 FDA  117 (379)
T ss_pred             ccc
Confidence            443

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=4.5e-09  Score=65.77  Aligned_cols=63  Identities=24%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             CCCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCc
Q 033812            2 DGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE   72 (111)
Q Consensus         2 ~~~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~   72 (111)
                      .||..+.+..+.---||||.++++.+.||.++|+++...|||+.+++        -.-..||+|+++|...
T Consensus        46 ~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   46 KGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT  108 (112)
T ss_pred             hcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence            58889999999999999999999999999999999999999997543        4455899999999754

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=6.1e-09  Score=73.82  Aligned_cols=60  Identities=33%  Similarity=0.638  Sum_probs=51.4

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHH-HhCCchHH
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSDENKR   75 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~-vL~d~~~R   75 (111)
                      -+.+|.+|||..+|+.++++.+|..|++++|||.....     ...+.|.+|.+||. ||+....+
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-----adaa~f~qideafrkvlq~~~~k  106 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-----ADAARFIQIDEAFRKVLQEKFAK  106 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999985433     56789999999999 88755433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6.1e-08  Score=80.51  Aligned_cols=54  Identities=33%  Similarity=0.522  Sum_probs=45.9

Q ss_pred             CccCcchhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhC
Q 033812           10 GSLSYYAILGIRK----DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS   70 (111)
Q Consensus        10 ~~~~~Y~iLgv~~----~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~   70 (111)
                      ..-+-|+||.|+-    ....+.||++|++++.+|||||++       +-.+.|..+++||+.|+
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHHHH
Confidence            3446799999975    345588999999999999999975       56789999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.4e-07  Score=61.12  Aligned_cols=79  Identities=23%  Similarity=0.421  Sum_probs=61.5

Q ss_pred             CCccCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            9 GGSLSYYAILGIRK--DASFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~--~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ....+||.++|...  ...++.++.-|....++.|||+.... ......+.+....+++||.+|.||.+|+.|-..+.+.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~   84 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQ   84 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence            34578999998755  45677778799999999999985432 2222367888999999999999999999999876554


Q ss_pred             CC
Q 033812           86 LE   87 (111)
Q Consensus        86 ~~   87 (111)
                      ..
T Consensus        85 e~   86 (168)
T KOG3192|consen   85 EQ   86 (168)
T ss_pred             CC
Confidence            33

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=3e-05  Score=52.91  Aligned_cols=74  Identities=24%  Similarity=0.410  Sum_probs=58.6

Q ss_pred             CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCCh-HHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           13 SYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVA-GEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        13 ~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      +++..+|+++.+  ..+.++..|+.+.+.+|||+....+... ..+.+.+..++.||.+|.+|..|..|-..+.++.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~   78 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL   78 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence            456667777655  4466999999999999999987654322 2467789999999999999999999998777444

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.73  E-value=5.7e-05  Score=58.61  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCh---HHHHHHHHHHHHHHHHh
Q 033812           19 GIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVA---GEAKCRFQQIQEAYSVL   69 (111)
Q Consensus        19 gv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~---~~~~~~f~~i~~Ay~vL   69 (111)
                      ++..-.+.++||++||+.++..||||..+.+...   -.+.+.|-.+++||+..
T Consensus       395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            3445578999999999999999999987643222   24566666777777644

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=4.7e-05  Score=51.97  Aligned_cols=58  Identities=33%  Similarity=0.473  Sum_probs=48.8

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHh
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVL   69 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL   69 (111)
                      .+.|.+||+...+...+|+++|+++...+|||+...   ....-..+.+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            688999999999999999999999999999998533   2333357888899999999754

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.67  E-value=0.0045  Score=40.35  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=38.5

Q ss_pred             CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchH
Q 033812           13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK   74 (111)
Q Consensus        13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~   74 (111)
                      .-..||||++..+.++|.+.|.+|....+|++.+        ..-.-..|..|.+.|....+
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999853        33445578888888875543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=95.99  E-value=0.021  Score=36.45  Aligned_cols=52  Identities=19%  Similarity=0.279  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCch
Q 033812           22 KDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN   73 (111)
Q Consensus        22 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~   73 (111)
                      +..+..+++.+-|..-++.|||.+...|..++.-++-++.++.-.+.|..+.
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            3456788999999999999999998888877777888889988888888765

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=94.89  E-value=0.066  Score=37.30  Aligned_cols=40  Identities=30%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHH-hCCc
Q 033812           21 RKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV-LSDE   72 (111)
Q Consensus        21 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~v-L~d~   72 (111)
                      +++|+.+||.+|+.++..+|--|.            +.-..|..||+. |++.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~------------~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDE------------KSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHHHH
Confidence            478999999999999999984442            445679999994 4443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=94.66  E-value=0.14  Score=28.90  Aligned_cols=28  Identities=32%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHH
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAM   38 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~   38 (111)
                      -.+-|+.|||++..+.+.|-.+|+....
T Consensus         4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    4 VEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999988

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=93.17  E-value=0.15  Score=37.96  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=44.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812           23 DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   81 (111)
Q Consensus        23 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~   81 (111)
                      .++..+|+.+|+..++..||++............+.+++|.+||.+|.+...|...|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            35778899999999999999986320111125677899999999999997666566653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-14
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-13
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		5e-13
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		6e-13
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		6e-13
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-12
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-12
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-12
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		5e-12
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		6e-12
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		6e-12
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-11
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-11
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		9e-11
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-10
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		6e-10
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		2e-09
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-09
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-07
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		3e-07
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		9e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		2e-06
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		5e-05

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG++  AS  DI+ AY KLA++WHPD   KNP    EA+ +F+ + EAY VLSD  
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 74 KRSMYD 79
          KRS+YD
Sbjct: 68 KRSLYD 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +L + + AS   I+ AY KLA+KWHPD   KNP    EA+ RF+Q+ EAY VLSD  
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 74 KRSMYD 79
          KR +YD
Sbjct: 68 KRDIYD 73

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K A   +IR AY +LAMK+HPDR+  +     EA+ +F++I+EAY VL+D  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAAYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K A   +IR AY +LAMK+HPDR+  +     EA+ +F++I+EAY VL+D  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAAYD 66

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K A   +IR AY +LAMK+HPDR+  +     EA+ +F++I+EAY VL+D  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60
Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAAYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 7/68 (10%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG++ DAS ++++ AY K+A+K+HPD   KNP  A     +F+QI +AY VLSDE 
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGA----EQFKQISQAYEVLSDEK 62
Query: 74 KRSMYDAG 81
          KR +YD G
Sbjct: 63 KRQIYDQG 70

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 4/67 (5%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++AS  +I+ AY++LA K+HPD +  +P    +AK +F Q+ EAY VLSDE 
Sbjct: 9  YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEV 64
Query: 74 KRSMYDA 80
          KR  YDA
Sbjct: 65 KRKQYDA 71

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K AS   I+ A+HKLAMK+HPD++ K+P    +A+ +F++I EAY  LSD N
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSP----DAEAKFREIAEAYETLSDAN 63
Query: 74 KRSMYD 79
          +R  YD
Sbjct: 64 RRKEYD 69

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 7/68 (10%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG++ +A+  +++ AY KLA+K+HPD   KNP   GE   +F+QI +AY VLSD  
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPD---KNPN-EGE---KFKQISQAYEVLSDAK 60
Query: 74 KRSMYDAG 81
          KR +YD G
Sbjct: 61 KRELYDKG 68

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 8/73 (10%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
          Y +LG+ K+A+  DI+ +Y KLA+K+HPD++  NP    EA  +F++I  A+++L+D  K
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATK 75
Query: 75 RSMYDA----GLY 83
          R++YD     GLY
Sbjct: 76 RNIYDKYGSLGLY 88

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
          Y +LG+ + AS +DI+ AY KLA +WHPD++ K+PG    A+ RF QI +AY +LS+E K
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPG----AEDRFIQISKAYEILSNEEK 74
Query: 75 RSMYD 79
          R+ YD
Sbjct: 75 RTNYD 79

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY IL + + AS  DI+ AY + A++WHPD   KNP     A+ +F+++ EAY VLSD++
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 74 KRSMYD 79
          KR +YD
Sbjct: 61 KREIYD 66

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          +Y++LG+ K AS  +IR A+ KLA+K HPD++  NP   G+    F +I  AY VL DE+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 78
Query: 74 KRSMYD 79
           R  YD
Sbjct: 79 LRKKYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          +Y++LG+ K AS  +IR A+ KLA+K HPD++  NP   G+    F +I  AY VL DE+
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGD----FLKINRAYEVLKDED 59
Query: 74 KRSMYD 79
           R  YD
Sbjct: 60 LRKKYD 65

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YYAI+G++       I++AY +LA K+HPD S K P    +A+ RF+++ EA+ VLSDE 
Sbjct: 7  YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEP----DAEARFKEVAEAWEVLSDEQ 61
Query: 74 KRSMYD 79
          +R+ YD
Sbjct: 62 RRAEYD 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YYAILG++       I++AY +LA K+HPD S +N     +A+ +F+ + EA+ VL DE 
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQ 84
Query: 74 KRSMYD 79
          +R+ YD
Sbjct: 85 RRAEYD 90

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY  LG+ + AS  +I+ AY + A+++HPD++ K PG    A+ +F++I EAY VLSD  
Sbjct: 5  YYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPG----AEEKFKEIAEAYDVLSDPR 59
Query: 74 KRSMYD 79
          KR ++D
Sbjct: 60 KREIFD 65

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ + AS  D++ AY +LA+K+HPD++   PG    A   F+ I  AY+VLS+  
Sbjct: 9  YYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPG----ATEAFKAIGTAYAVLSNPE 63
Query: 74 KRSMYD 79
          KR  YD
Sbjct: 64 KRKQYD 69

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 14  YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           YY ILG++++A   +I  AY KLA++WHPD + +N     +A+ +F  I  A  VLSD  
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 74  KRSMYDAG 81
            R  +D G
Sbjct: 443 XRKKFDDG 450

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 14  YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           YY ILG++++A   +I  AY KLA++WHPD + +N     +A+ +F  I  A  VLSD  
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 74  KRSMYDAG 81
            R  +D G
Sbjct: 443 MRKKFDDG 450

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
          Y +LG+   A+ + I++AY++    +HPDR   N G A EA  RF +I +AY VL     
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDR---NSGSA-EAAERFTRISQAYVVLGSATL 75
Query: 75 RSMYDAGLYDPLEEEDEVPP 94
          R  YD GL   L +ED   P
Sbjct: 76 RRKYDRGL---LSDEDLRGP 92

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN--PGVAGEAKCRFQQIQEAYSVLSD 71
          +Y+ILG    A+ SD++  Y KL + +HPD+ + +   G   E   +F +I +A+ +L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 72 ENKRSMYD 79
          E  +  YD
Sbjct: 72 EETKREYD 79

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 15 YAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74
          Y +LG+   A+  +++  Y K A+K+HPD+        G+ + +F++I EA+ +L+D  K
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP------TGDTE-KFKEISEAFEILNDPQK 63
Query: 75 RSMYD 79
          R +YD
Sbjct: 64 REIYD 68

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR-SAKNP-GVAGEAKCRFQQIQEAYSVLSD 71
          +Y+ILG    A+ SD++  Y KL + +HPD+ SA  P G   E   +F +I +A+ +L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 72 ENKRSMYD 79
          E  +  YD
Sbjct: 78 EETKKKYD 85

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG  + +S   I + +   A++ HPD+  +NP    +A   FQ++Q+A  +L++E 
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEE 77
Query: 74 KRSMYD 79
           R+ YD
Sbjct: 78 SRARYD 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	5e-28
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-27
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-27
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-26
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-26
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-26
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-25
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-24
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-24
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	4e-24
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-24
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-24
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	6e-24
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-23
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-23
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	3e-23
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-23
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-23
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	5e-23
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-22
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-21
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-20
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-19
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-19
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	4e-16
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-15
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	4e-15
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-14
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-12
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	5e-12
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-09
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	8e-09
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-08

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 96.6 bits (241), Expect = 5e-28
 Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +L + + AS   I+ AY KLA+KWHPD   KNP    EA+ RF+Q+ EAY VLSD  
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAK 67

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 68 KRDIYD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 96.3 bits (240), Expect = 1e-27
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY IL + + AS  DI+ AY + A++WHPD   KNP     A+ +F+++ EAY VLSD++
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPD---KNPDNKEFAEKKFKEVAEAYEVLSDKH 60

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 61 KREIYD 66

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 95.5 bits (238), Expect = 2e-27
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG++  AS  DI+ AY KLA++WHPD   KNP    EA+ +F+ + EAY VLSD  
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPD---KNPDNKEEAEKKFKLVSEAYEVLSDSK 67

Query: 74 KRSMYD 79
          KRS+YD
Sbjct: 68 KRSLYD 73

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 94.9 bits (236), Expect = 2e-26
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAG--EAKCRFQQIQEAYSVLSD 71
          +Y+ILG    A+ SD++  Y KL + +HPD+ + +       E   +F +I +A+ +L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71

Query: 72 ENKRSMYDAGL 82
          E  +  YD   
Sbjct: 72 EETKREYDLQR 82

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 98.5 bits (246), Expect = 3e-26
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YYAILG++       I++AY +LA K+HPD    +     EAK  F+ + EA+ VL DE 
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDV---SKENDAEAK--FKDLAEAWEVLKDEQ 84

Query: 74 KRSMYDAG 81
          +R+ YD  
Sbjct: 85 RRAEYDQL 92

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 94.9 bits (236), Expect = 8e-26
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          +Y++LG+ K AS  +IR A+ KLA+K HPD++  NP     A   F +I  AY VL DE+
Sbjct: 4  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDED 59

Query: 74 KRSMYD 79
           R  YD
Sbjct: 60 LRKKYD 65

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 89.9 bits (224), Expect = 2e-25
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY  LG+ + AS  +I+ AY + A+++HPD   KN     E K  F++I EAY VLSD  
Sbjct: 5  YYQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEK--FKEIAEAYDVLSDPR 59

Query: 74 KRSMYD 79
          KR ++D
Sbjct: 60 KREIFD 65

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 89.0 bits (221), Expect = 1e-24
 Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 4/67 (5%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
          S Y +LG+ K+A+  DI+ +Y KLA+K+HPD   KNP    EA  +F++I  A+++L+D 
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPD---KNPDNP-EAADKFKEINNAHAILTDA 73

Query: 73 NKRSMYD 79
           KR++YD
Sbjct: 74 TKRNIYD 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 87.9 bits (218), Expect = 2e-24
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAG--EAKCRFQQIQEAYSVLSD 71
          +Y+ILG    A+ SD++  Y KL + +HPD+ + +       E   +F +I +A+ +L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77

Query: 72 ENKRSMYD 79
          E  +  YD
Sbjct: 78 EETKKKYD 85

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 86.5 bits (215), Expect = 4e-24
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 7/66 (10%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG++ DAS ++++ AY K+A+K+HPD   KNP    E   +F+QI +AY VLSDE 
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPD-GAE---QFKQISQAYEVLSDEK 62

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 63 KRQIYD 68

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 86.5 bits (215), Expect = 4e-24
 Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ ++AS  +I+ AY++LA K+HPD    N     +AK +F Q+ EAY VLSDE 
Sbjct: 9  YYQILGVPRNASQKEIKKAYYQLAKKYHPDT---NKDDP-KAKEKFSQLAEAYEVLSDEV 64

Query: 74 KRSMYD 79
          KR  YD
Sbjct: 65 KRKQYD 70

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 87.5 bits (217), Expect = 5e-24
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY +LG  + +S   I + +   A++ HPD+   +P    +A   FQ++Q+A  +L++E 
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDK---HPENP-KAVETFQKLQKAKEILTNEE 77

Query: 74 KRSMYD 79
           R+ YD
Sbjct: 78 SRARYD 83

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 86.7 bits (215), Expect = 6e-24
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           Y +LG+   A+ + I++AY++    +HPDR   N G A EA  RF +I +AY VL    
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDR---NSGSA-EAAERFTRISQAYVVLGSAT 74

Query: 74 KRSMYD 79
           R  YD
Sbjct: 75 LRRKYD 80

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 86.1 bits (214), Expect = 1e-23
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K A   +IR AY +LAMK+HPDR   N G   EA+ +F++I+EAY VL+D  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDR---NQGDK-EAEAKFKEIKEAYEVLTDSQ 60

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 61 KRAAYD 66

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 85.1 bits (211), Expect = 2e-23
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           Y +LG+ + AS +DI+ AY KLA +WHPD++ K+PG    A+ RF QI +AY +LS+E 
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPG----AEDRFIQISKAYEILSNEE 73

Query: 74 KRSMYD 79
          KR+ YD
Sbjct: 74 KRTNYD 79

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 84.6 bits (210), Expect = 3e-23
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 6  GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEA 65
          GS+G S  YY ILG+ + AS  D++ AY +LA+K+HPD+   N          F+ I  A
Sbjct: 1  GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDK---NHAPGATEA--FKAIGTA 55

Query: 66 YSVLSDENKRSMYD 79
          Y+VLS+  KR  YD
Sbjct: 56 YAVLSNPEKRKQYD 69

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 85.1 bits (211), Expect = 3e-23
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           Y +LG+   A+  +++  Y K A+K+HPD   K  G       +F++I EA+ +L+D  
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPD---KPTG----DTEKFKEISEAFEILNDPQ 62

Query: 74 KRSMYD 79
          KR +YD
Sbjct: 63 KREIYD 68

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 84.7 bits (210), Expect = 3e-23
 Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K AS   I+ A+HKLAMK+HPD+   N     EAK  F++I EAY  LSD N
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDK---NKSPDAEAK--FREIAEAYETLSDAN 63

Query: 74 KRSMYD 79
          +R  YD
Sbjct: 64 RRKEYD 69

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 84.8 bits (210), Expect = 5e-23
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 14 YYAILGIRKDA-SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
           Y +L + ++      +  AY  LA K HPDR  KN      A+ RF+ I  AY  L D+
Sbjct: 17 CYDVLEVNREEFDKQKLAKAYRALARKHHPDRV-KNKEEKLLAEERFRVIATAYETLKDD 75

Query: 73 NKRSMYDAGLYDPLE 87
            ++ YD  L  P +
Sbjct: 76 EAKTNYDYYLDHPDQ 90

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 82.1 bits (203), Expect = 4e-22
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
            +++        S+ +    +L +KWHPD   KNP     A   F+ +Q   + L    
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPD---KNPENHDIANEVFKHLQNEINRLE--- 71

Query: 74 KRSMYD 79
          K++  D
Sbjct: 72 KQAFLD 77

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 80.2 bits (198), Expect = 2e-21
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           + +LG++  AS  ++  AY KLA+  HPD+    PG + +A   F+ +  A + L    
Sbjct: 29 SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKC-VAPG-SEDA---FKAVVNARTALLKNI 83

Query: 74 KRSMYDA 80
          K      
Sbjct: 84 KSGPSSG 90

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 86.0 bits (212), Expect = 3e-21
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          +Y++LG+ K AS  +IR A+ KLA+K HPD++  NP     A   F +I  AY VL DE+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDED 78

Query: 74 KRSMYD 79
           R  YD
Sbjct: 79 LRKKYD 84

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 14  YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
           YY ILG++++A   +I  AY KLA++WHPD   +N     +A+ +F  I  A  VLSD  
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDN-FQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 74  KRSMYDAG 81
            R  +D G
Sbjct: 443 MRKKFDDG 450

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 78.0 bits (192), Expect = 1e-19
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 14 YYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
             +LG+ + A  +   +R AY K   ++HPD   K      E K   +++   Y  + D
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---KGGD---EEK--MKKMNTLYKKMED 64

Query: 72 ENKRSMYD 79
            K +   
Sbjct: 65 GVKYAHQP 72

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 76.0 bits (187), Expect = 1e-19
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 12/83 (14%)

Query: 14 YYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71
             +LG+ + A  +   +R AY K   ++HPD+        G  + + +++   Y  + D
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--------GGDEEKMKKMNTLYKKMED 61

Query: 72 ENKRSMYDAGLYDPLEEEDEVPP 94
            K +      +    +  E+P 
Sbjct: 62 GVKYAHQPD--FGGFWDATEIPT 82

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 67.2 bits (163), Expect = 2e-15
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 13  SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE--AKCRFQQIQEAYSVLS 70
           + +  +G+    +   ++  Y K  +  HPD   K  G   E  AK  F ++ +A+S   
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPD---KATGQPYEQYAKMIFMELNDAWSEFE 174

Query: 71  DENKRSMY 78
           ++ ++ +Y
Sbjct: 175 NQGQKPLY 182

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 66.1 bits (161), Expect = 4e-15
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 12 LSYYAILGIRK--DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE-AKCRFQQIQEAYSV 68
          + Y+ + G+          +   +  L  ++HPD+ A         A  +   I +A+  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 69 LSDENKRSMYDAGLY 83
          L     R+ Y   L+
Sbjct: 61 LRHPLMRAEYLLSLH 75

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 63.5 bits (154), Expect = 6e-14
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 13 SYYAILGIRK-------DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEA 65
          ++Y +                S +R  Y +L  + HPD +        +   +   + +A
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQ-------QGSEQSSTLNQA 64

Query: 66 YSVLSDENKRSMYDAGLYDPLEEEDE 91
          Y  L D  +RS Y   L   ++   E
Sbjct: 65 YHTLKDPLRRSQYMLKLLRNIDLTQE 90

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 56.1 bits (135), Expect = 4e-12
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 11 SLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV 68
                +L + +     F  ++ AY + ++  HPD+        G +    Q++   +  
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK--------GGSHALMQELNSLWGT 61

Query: 69 LSDENKRSMYDAG 81
             E      + G
Sbjct: 62 FKTEVYNLRMNLG 74

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 58.6 bits (141), Expect = 5e-12
 Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 11  SLSYYAILGIRK--DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE-AKCRFQQIQEAYS 67
           +  Y++++   +      + ++  Y +L    HPD  ++      + ++     + +AY 
Sbjct: 42  TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101

Query: 68  VLSDENKRSMYD 79
            L     R +Y 
Sbjct: 102 TLLAPLSRGLYL 113

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 50.4 bits (120), Expect = 1e-09
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE--AKCRFQQIQEAYSVLS 70
          + +  +G+    +   ++  Y K  +  HP    K  G   E  AK  F ++ +A+S   
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPC---KATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 71 DE 72
          ++
Sbjct: 91 NQ 92

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 48.1 bits (114), Expect = 8e-09
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 13  SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGE---AKCRFQQIQEAYSVL 69
           S +  + +      + +R +Y +  +  HPD+  +    A +   A+  F+ +QEA+   
Sbjct: 41  SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100

Query: 70  SDEN 73
           +   
Sbjct: 101 NTLG 104

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 47.0 bits (112), Expect = 1e-08
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 14 YYAILGIRKDA-SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
             IL + ++  +   ++  + K+ +  HPD+        G +     +I EA   L   
Sbjct: 16 ALQILNLTENTLTKKKLKEVHRKIMLANHPDK--------GGSPFLATKINEAKDFLEKR 67

Query: 73 NKR 75
             
Sbjct: 68 GIS 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.93
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.92
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.92
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.92
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.92
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.91
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.91
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.91
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.9
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.9
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.9
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.9
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.9
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.89
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.88
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.86
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.86
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.85
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.85
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.85
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.82
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.8
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.8
2guz_A	71	Mitochondrial import inner membrane translocase su	99.8
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.79
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.79
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.79
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.78
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.77
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.76
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.75
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
2guz_B	65	Mitochondrial import inner membrane translocase su	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.59

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=7.5e-26  Score=135.33  Aligned_cols=76  Identities=51%  Similarity=0.800  Sum_probs=69.5

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      |+++...|||+||||+++++.++||++|+++++++|||+++..+    .+.+.|+.|++||++|+||.+|..||.++...
T Consensus         1 gs~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            1 GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            57788899999999999999999999999999999999987544    57899999999999999999999999987544

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=2.7e-25  Score=138.22  Aligned_cols=77  Identities=34%  Similarity=0.602  Sum_probs=69.4

Q ss_pred             CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      .+.+.+...|||+||||++.++.++||++||++++++|||+++..+    .+.+.|++|++||++|+||.+|..||..+.
T Consensus         9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A            9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            3445677899999999999999999999999999999999986544    688999999999999999999999999775


Q ss_pred             C
Q 033812           84 D   84 (111)
Q Consensus        84 ~   84 (111)
                      .
T Consensus        85 ~   85 (99)
T 2yua_A           85 S   85 (99)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=1.5e-25  Score=133.73  Aligned_cols=75  Identities=44%  Similarity=0.707  Sum_probs=68.5

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      |+.+...|||+||||+++++.++||++|+++++++|||+++..     .+.+.|+.|++||++|+||.+|..||..+...
T Consensus         1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            1 GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-----GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CCCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-----HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            5778889999999999999999999999999999999997542     68899999999999999999999999987543

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=3.9e-25  Score=133.07  Aligned_cols=79  Identities=46%  Similarity=0.816  Sum_probs=69.7

Q ss_pred             CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      |.++.....|||+||||+++++.++||++|+++++++|||+++..   .+.+.+.|+.|++||++|+||.+|..||.++.
T Consensus         1 g~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN---KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             CCSCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT---HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            345566778999999999999999999999999999999997543   34788999999999999999999999999875


Q ss_pred             CC
Q 033812           84 DP   85 (111)
Q Consensus        84 ~~   85 (111)
                      .+
T Consensus        78 ~~   79 (82)
T 2ej7_A           78 GP   79 (82)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=5.9e-25  Score=134.04  Aligned_cols=73  Identities=51%  Similarity=0.800  Sum_probs=67.1

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      |++....|||+||||++.++.++||++||++++++|||+++.     ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus         1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            1 GSSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-----PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CCSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-----HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            567788999999999999999999999999999999999763     2788999999999999999999999998663

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=133.11  Aligned_cols=80  Identities=45%  Similarity=0.821  Sum_probs=70.1

Q ss_pred             CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      |.++.....|||+||||++.++.++||++|+++++++|||+++...   ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus         1 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK---EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            3455667789999999999999999999999999999999976442   4788999999999999999999999999775


Q ss_pred             CCC
Q 033812           84 DPL   86 (111)
Q Consensus        84 ~~~   86 (111)
                      ...
T Consensus        78 ~~~   80 (92)
T 2dmx_A           78 DSW   80 (92)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            544

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.91  E-value=8.1e-25  Score=134.67  Aligned_cols=78  Identities=29%  Similarity=0.597  Sum_probs=68.5

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN--PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         8 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      .+...|||+||||+++++.++||++||++++++|||+++..  +.....+.+.|++|++||++|+||.+|+.||..+..+
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   91 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence            34578999999999999999999999999999999998642  2233578899999999999999999999999988654

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.91  E-value=2.1e-24  Score=128.45  Aligned_cols=70  Identities=37%  Similarity=0.663  Sum_probs=63.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ..|||+||||+++++.++||++|+++++++|||+++..     .+.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            36899999999999999999999999999999998643     57889999999999999999999999977443

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.90  E-value=4.7e-24  Score=130.00  Aligned_cols=73  Identities=42%  Similarity=0.701  Sum_probs=66.0

Q ss_pred             CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         8 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      .....|||+||||++.++.++||++||++++++|||+++..     .+.+.|+.|++||++|+||.+|..||..+..+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-----GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-----THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            34578999999999999999999999999999999998643     57899999999999999999999999987543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.90  E-value=1.1e-23  Score=133.13  Aligned_cols=73  Identities=40%  Similarity=0.694  Sum_probs=66.4

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ......|||+||||++.++.++||++|+++++++|||+++..+    .+.+.|++|++||++|+||.+|..||..+.
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            4566789999999999999999999999999999999986543    688999999999999999999999998663

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.90  E-value=6.5e-24  Score=125.21  Aligned_cols=68  Identities=44%  Similarity=0.792  Sum_probs=60.9

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ....|||+||||+++++.++||++|+++++++|||+++..       .+.|+.|++||++|+||.+|..||..+.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-------AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3567999999999999999999999999999999997532       4789999999999999999999999763

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.8e-24  Score=134.29  Aligned_cols=73  Identities=30%  Similarity=0.516  Sum_probs=66.2

Q ss_pred             CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812            9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ....|||+||||+++++.++||++||++++++|||+++.++    .+.+.|++|++||++|+||.+|..||..+...
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            44689999999999999999999999999999999987544    58899999999999999999999999977543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.90  E-value=5.3e-24  Score=132.47  Aligned_cols=73  Identities=42%  Similarity=0.743  Sum_probs=64.0

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      .|||+||||+++++.++||++|+++++++|||+++..   .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN---KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC---CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            5899999999999999999999999999999997644   236889999999999999999999999997755443

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=8.6e-24  Score=132.25  Aligned_cols=73  Identities=47%  Similarity=0.782  Sum_probs=65.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      ..|||+||||+++++.++||++||++++++|||+++..+    .+.+.|++|++||++|+||.+|..||..+.....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            368999999999999999999999999999999987543    5788999999999999999999999998765543

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.89  E-value=1.1e-23  Score=132.91  Aligned_cols=77  Identities=30%  Similarity=0.420  Sum_probs=67.9

Q ss_pred             CCCCccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812            7 SNGGSLSYYAILGIRKDA-SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus         7 ~~~~~~~~Y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ......|||+||||++++ +.++||++||++++++|||+++. +.....+.+.|++|++||++|+||.+|..||..+..
T Consensus        10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            344578999999999999 99999999999999999999864 233357889999999999999999999999998854

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.88  E-value=3.9e-23  Score=137.55  Aligned_cols=76  Identities=29%  Similarity=0.581  Sum_probs=67.4

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--CChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      .++...|||+||||+++++.++||++||++++++|||+++..+  ..++.+.+.|+.|++||++|+||.+|+.||..+
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4566789999999999999999999999999999999987653  233467899999999999999999999999755

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.7e-23  Score=126.99  Aligned_cols=68  Identities=31%  Similarity=0.645  Sum_probs=61.7

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD   84 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~   84 (111)
                      ...|||+||||++.++.++||++|+++++++|||+++.+       .+.|++|++||++|+||.+|..||..+..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   73 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQKREIYDQYGLE   73 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-------HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-------HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence            568999999999999999999999999999999997543       35899999999999999999999997643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.86  E-value=5.6e-22  Score=136.37  Aligned_cols=72  Identities=44%  Similarity=0.714  Sum_probs=65.2

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE   87 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~   87 (111)
                      .|||+||||+++|+.++||+|||++++++|||+++..+    .+.+.|+.|++||++|+||.+|+.||..+.....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            58999999999999999999999999999999986554    5889999999999999999999999997755443

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.85  E-value=7.4e-22  Score=133.44  Aligned_cols=75  Identities=19%  Similarity=0.286  Sum_probs=65.6

Q ss_pred             cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        12 ~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      +|||+||||++++  +..+||++||++++++|||+++..+. .+..+.+.|..|++||+||+||.+|..||..+.+..
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~   78 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD   78 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence            4899999999999  99999999999999999999876532 234577899999999999999999999999776544

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.85  E-value=2.2e-21  Score=134.57  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=65.4

Q ss_pred             CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc-CChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ...|||+||||++.  ++.++||++||++++++|||+++..+ ..+..+.+.|+.|++||+||+||.+|+.||..+.+.
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~  119 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI  119 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence            46899999999986  78999999999999999999987543 233457789999999999999999999999766544

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=6.1e-22  Score=121.14  Aligned_cols=62  Identities=27%  Similarity=0.433  Sum_probs=56.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM   77 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~   77 (111)
                      ..|||+||||+++++.++||++||++++++|||+++..     .+.+.|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-----GSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCcccccC
Confidence            47999999999999999999999999999999998643     578899999999999999998764

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.82  E-value=6.8e-22  Score=145.31  Aligned_cols=72  Identities=39%  Similarity=0.698  Sum_probs=0.0

Q ss_pred             CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812            6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL   82 (111)
Q Consensus         6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~   82 (111)
                      ++.+...|||+||||+++|+.++||+|||+++++||||+++..     .+.++|++|++||++|+||.+|+.||.++
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            3456678999999999999999999999999999999997643     67889999999999999999999999974

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.80  E-value=1.7e-20  Score=114.32  Aligned_cols=69  Identities=17%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812            4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR   75 (111)
Q Consensus         4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R   75 (111)
                      +++......++|+||||+++|+.++||+|||++++++|||+++.++   +.+.+.|++|++||++|+|...|
T Consensus         8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~---~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A            8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH---DIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH---HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch---HHHHHHHHHHHHHHHHHHhhccc
Confidence            3455666789999999999999999999999999999999976442   46899999999999999998776

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.80  E-value=3.9e-21  Score=122.20  Aligned_cols=66  Identities=23%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             CccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           10 GSLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ...++|+||||++.++.  ++||+|||++++++|||+++.        .+.|++|++||++|+||.+|+.||.+..
T Consensus         6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            35689999999999998  999999999999999999753        3689999999999999999999997554

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.2e-20  Score=110.71  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=58.2

Q ss_pred             CCCCCCCCCccCcchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812            2 DGGGGSNGGSLSYYAILGIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR   75 (111)
Q Consensus         2 ~~~~~~~~~~~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R   75 (111)
                      .||....+...++|+||||++ +++.++||++||++++++|||+.+        ..+.|++|++||++|+++..|
T Consensus         4 ~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--------~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A            4 KGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--------SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHhhhhhc
Confidence            467777888889999999999 799999999999999999999952        235899999999999988655

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.79  E-value=2.6e-20  Score=111.36  Aligned_cols=63  Identities=14%  Similarity=0.360  Sum_probs=56.1

Q ss_pred             CCccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812            9 GGSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD   79 (111)
Q Consensus         9 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd   79 (111)
                      ....++|+||||+++  ++.++||++||++++++|||+++        ..+.|++|++||++|+|+.+|..++
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~   72 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            344689999999999  99999999999999999999963        2478999999999999999998854

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.79  E-value=8.9e-21  Score=128.16  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=57.6

Q ss_pred             CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           10 GSLSYYAILGIRKDAS--FSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ...|+|+||||+++|+  .++||+|||++++++|||+++.        .+.|++|++||++|+||.+|+.||..+.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            4578999999999998  6999999999999999999653        2579999999999999999999999774

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.79  E-value=2.5e-20  Score=126.72  Aligned_cols=67  Identities=19%  Similarity=0.427  Sum_probs=59.8

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   78 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   78 (111)
                      ..|+|+||||++.++.++||+|||++++++|||+++..+. .+.+.+.|+.|++||++|+|+.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~-e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-EQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT-HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch-HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3689999999999999999999999999999999875432 235889999999999999999999876

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.78  E-value=4.8e-20  Score=125.52  Aligned_cols=73  Identities=22%  Similarity=0.355  Sum_probs=62.3

Q ss_pred             CCCCCccCcchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812            6 GSNGGSLSYYAIL------GIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   78 (111)
Q Consensus         6 ~~~~~~~~~Y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   78 (111)
                      .+.....|||+||      |+++ +++..+||++||++++++|||+++.       +.+.|..|++||+||+||.+|..|
T Consensus         5 ~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Y   77 (181)
T 3uo3_A            5 VQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQY   77 (181)
T ss_dssp             --CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred             cCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHH
Confidence            3556678999999      4665 8999999999999999999999764       456799999999999999999999


Q ss_pred             hhcc-CCC
Q 033812           79 DAGL-YDP   85 (111)
Q Consensus        79 d~~~-~~~   85 (111)
                      |..+ .+.
T Consensus        78 d~~l~~g~   85 (181)
T 3uo3_A           78 MLKLLRNI   85 (181)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhCC
Confidence            9977 444

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.77  E-value=7e-20  Score=115.06  Aligned_cols=63  Identities=16%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHhCCch
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSDEN   73 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL~d~~   73 (111)
                      ...|||+|||++. |+.++||+|||++++++||||++.   ++.....+.+.|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3479999999996 999999999999999999999753   22233457899999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.76  E-value=1.8e-19  Score=110.37  Aligned_cols=59  Identities=19%  Similarity=0.341  Sum_probs=52.2

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD   71 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d   71 (111)
                      .++|++|||++.|+.++||+|||++++++|||+++.++. ...+.+.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-EQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-HhHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999875432 23688999999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.75  E-value=1.3e-19  Score=144.12  Aligned_cols=76  Identities=41%  Similarity=0.655  Sum_probs=40.7

Q ss_pred             CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812            7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus         7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      ......|||+||||+++|+.++||+|||++++++|||+++..+    .+.+.|++|++||++|+||.+|+.||..+....
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            4455689999999999999999999999999999999986543    678899999999999999999999999775443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=7.5e-13  Score=96.78  Aligned_cols=70  Identities=39%  Similarity=0.679  Sum_probs=56.7

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG   81 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~   81 (111)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+.+ ..+..+.+.|+.|.+||++|+||.+|..||.+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            35899999999999999999999999999999997532 22346889999999999999999999999973

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2.4e-11  Score=69.66  Aligned_cols=53  Identities=15%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             cCcchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCc
Q 033812           12 LSYYAILGIRKD---ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE   72 (111)
Q Consensus        12 ~~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~   72 (111)
                      ..-|.||||++.   ++.++|+++||+|+..+|||+.+        .......|++|+++|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--------S~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--------SFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHHHH
Confidence            345789999999   99999999999999999999953        345677899999998643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.59  E-value=0.06  Score=42.18  Aligned_cols=46  Identities=20%  Similarity=0.175  Sum_probs=34.6

Q ss_pred             ccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 033812           11 SLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV   68 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~v   68 (111)
                      .+++|.+||++.+...  .+|+++||++++..+++            .+++..|..|..|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHhccc
Confidence            4459999999766544  67999999999975333            2577788888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-17
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-17
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	9e-16
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-14
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-14
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-14
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	4e-13
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-10

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (169), Expect = 1e-17
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 3  GGGGSNGGSLS------YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN--PGVAGE 54
          G  GS+G +L       +Y+ILG    A+ SD++  Y KL + +HPD+ + +   G   E
Sbjct: 1  GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60

Query: 55 AKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85
             +F +I +A+ +L +E  +  YD     P
Sbjct: 61 CMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.4 bits (167), Expect = 4e-17
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72
          + +  +G+    +   ++  Y K  +  HPD++         AK  F ++ +A+S   ++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKA-TGQPYEQYAKMIFMELNDAWSEFENQ 92

Query: 73 NKRSMY 78
           ++ +Y
Sbjct: 93 GQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 64.3 bits (156), Expect = 9e-16
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 4/75 (5%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY ILG+ K A   +IR AY +LAMK+HPDR+  +     EA+ +F++I+EAY VL+D  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQ 60

Query: 74 KRSMYDAGLYDPLEE 88
          KR+ YD   +   E+
Sbjct: 61 KRAAYDQYGHAAFEQ 75

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 60.4 bits (146), Expect = 3e-14
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 7  SNGGSLSYYAILGIRKDASFS--DIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQE 64
          S         +L + +        ++ AY + ++  HPD+   +           Q++  
Sbjct: 6  SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA--------LMQELNS 57

Query: 65 AYSVLSDENKRSMYDAG 81
           +     E      + G
Sbjct: 58 LWGTFKTEVYNLRMNLG 74

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (145), Expect = 4e-14
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 12 LSYYAILGIRKDASFS--DIRSAYHKLAMKWHPDRSAKNPGVAGEAKC-RFQQIQEAYSV 68
          + Y+ + G+          +   +  L  ++HPD+ A        A   +   I +A+  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 69 LSDENKRSMYDAGLY 83
          L     R+ Y   L+
Sbjct: 61 LRHPLMRAEYLLSLH 75

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 5e-14
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
            +++        S+ +    +L +KWHPD+   NP     A   F+ +Q   + L  + 
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDK---NPENHDIANEVFKHLQNEINRLEKQA 74

Query: 74 KRSMYD 79
                
Sbjct: 75 FLDQNA 80

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 4e-13
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 5/74 (6%)

Query: 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73
          YY  LG+ + AS  +I+ AY + A+++HPD++ +       A+ +F++I EAY VLSD  
Sbjct: 5  YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-----AEEKFKEIAEAYDVLSDPR 59

Query: 74 KRSMYDAGLYDPLE 87
          KR ++D    + L+
Sbjct: 60 KREIFDRYGEEGLK 73

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 50.2 bits (119), Expect = 6e-10
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 11 SLSYYAILGIRKDASFS--DIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV 68
          SL    +LG+ + A  +   +R AY K   ++HPD+             + +++   Y  
Sbjct: 7  SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--------EKMKKMNTLYKK 58

Query: 69 LSDENKRSMYD 79
          + D  K +   
Sbjct: 59 MEDGVKYAHQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.94
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.91
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.87
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.87
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.82
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.7e-27  Score=137.50  Aligned_cols=71  Identities=46%  Similarity=0.777  Sum_probs=64.9

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ..|||+||||+++||.++||+||+++++++|||+++.++    .+.+.|..|++||+||+||.+|..||..+...
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~----~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTC----HHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            479999999999999999999999999999999987654    67889999999999999999999999987543

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-25  Score=130.77  Aligned_cols=70  Identities=39%  Similarity=0.680  Sum_probs=63.7

Q ss_pred             cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812           12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL   86 (111)
Q Consensus        12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~   86 (111)
                      .|||+||||+++||.++|++||+++++++|||++...     .+.+.|..|++||+||+||.+|+.||+++....
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~-----~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch-----hHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            5899999999999999999999999999999998644     577889999999999999999999999775543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.4e-25  Score=133.97  Aligned_cols=76  Identities=30%  Similarity=0.605  Sum_probs=66.5

Q ss_pred             CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--CChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ...|||+||||+++++.++||++|+++++++|||++....  .....+.+.|+.|++||+||+||.+|+.||.....+
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~   91 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCC
Confidence            3579999999999999999999999999999999976542  223568889999999999999999999999877654

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4e-23  Score=121.40  Aligned_cols=72  Identities=19%  Similarity=0.337  Sum_probs=62.2

Q ss_pred             cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC-cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        12 ~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      .|||+||||++.+  +.++||++|+++++.+|||++... +..+..+.+.|..|++||+||+||.+|+.|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            4899999999865  589999999999999999997653 33345678889999999999999999999998764

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.87  E-value=8.8e-24  Score=132.94  Aligned_cols=67  Identities=22%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             ccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812           11 SLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP   85 (111)
Q Consensus        11 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~   85 (111)
                      ..++|+||||+++|  +.++||+|||+|++++|||+++..        +.|++|++||+||+||.+|+.||..+...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~--------e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--------EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT--------TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH--------HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999998  788999999999999999997532        47999999999999999999999865443

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.82  E-value=9.1e-22  Score=116.15  Aligned_cols=66  Identities=15%  Similarity=0.328  Sum_probs=59.0

Q ss_pred             CccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           10 GSLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        10 ~~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ...++|+||||++++  +.++||+|||++++++|||+++        ..+.|++|++||++|+|+.+|..||....
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g--------~~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC--------CHHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            457899999999987  9999999999999999999964        23689999999999999999999998653

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=6.8e-21  Score=116.65  Aligned_cols=67  Identities=18%  Similarity=0.396  Sum_probs=59.9

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY   78 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y   78 (111)
                      ..+.|++|||.+.++.++||+||+++++.+|||+++.+ .....+.+.|..|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~-~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ-PYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTS-TTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCCh-HHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            45789999999999999999999999999999997644 33456889999999999999999999877

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.1e-19  Score=106.17  Aligned_cols=67  Identities=21%  Similarity=0.329  Sum_probs=57.5

Q ss_pred             ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812           11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY   83 (111)
Q Consensus        11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~   83 (111)
                      ..++|+||||++++|.++||+|||+++++||||+++.+   .+.+.+.|+.|++||++|+   ++..||....
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN---HDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC---HHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch---hhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            46999999999999999999999999999999997544   3578999999999999996   4566665543