Citrus Sinensis ID: 033894

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Secondary Structure (PSIPRED)
cEEEEEEccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccEEEEEEHHccccEEEEccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccEEEEEEEEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MILAVLFANSEGNILVERSVYIVYTVLGDVsifvvgkdeydELALAEVIFAITSAVKDacgkipterlfldkyGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Flexible Loop (DISEMBL)
MILAVLFAnsegnilvERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWkgllentekdrirrlvrlkppnef
Low Complexity Region (SEG)
MILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Disordered region (IsUnstruct)
*ILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRI************
Disordered Region (DISOPRED)
*ILA*L*ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLV*LK*****
Disordered Region (DISEMBL)
MILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Disordered Region (DISPRO)
MILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q5NA06	177	Coatomer subunit zeta-3 O	no	no	0.825	0.508	0.333	3e-05
Q9MAX5	177	Coatomer subunit zeta-1 O	no	no	0.788	0.485	0.360	0.0001

>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%)

Query: 8   ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
           A +E  I++  S ++VY  + D+  FV G DE +EL LA V+   + A+          R
Sbjct: 51  ARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRR 110

Query: 68  LFLDKYGKICLCLDEIVWKGLLENTEKDRI 97
             L+    I LCLDE+V  G++  T+   I
Sbjct: 111 AALENLDLIFLCLDEVVDGGIVLETDAKAI 140

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%)

Query: 8   ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
           A +E  I++     +VY  + D+  FV G +E +EL LA V+   T AV         +R
Sbjct: 51  AGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKR 110

Query: 68  LFLDKYGKICLCLDEIVWKGLLENTE 93
             L+    I LCLDEIV  G++  TE
Sbjct: 111 TALENLDLILLCLDEIVDGGIVLETE 136

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255553161	147	conserved hypothetical protein [Ricinus	1.0	0.741	0.680	2e-45
357114648	875	PREDICTED: pentatricopeptide repeat-cont	0.990	0.123	0.623	2e-44
41393251	884	putative chloroplastic RNA-binding prote	0.990	0.122	0.630	2e-44
224054422	147	predicted protein [Populus trichocarpa]	1.0	0.741	0.659	2e-44
351726776	147	uncharacterized protein LOC100306313 [Gl	1.0	0.741	0.639	5e-44
449437134	147	PREDICTED: uncharacterized protein LOC10	1.0	0.741	0.646	7e-44
225442985	147	PREDICTED: uncharacterized protein LOC10	1.0	0.741	0.659	9e-44
351723349	147	uncharacterized protein LOC100305755 [Gl	1.0	0.741	0.646	1e-43
356555439	147	PREDICTED: uncharacterized protein LOC10	1.0	0.741	0.653	3e-43
388494714	147	unknown [Lotus japonicus]	1.0	0.741	0.646	4e-43

>gi|255553161|ref|XP_002517623.1| conserved hypothetical protein [Ricinus communis] gi|223543255|gb|EEF44787.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 105/147 (71%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFAN EGNIL+ER                                      SVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVWKGLLENT++DRIRRL+RLKPP +F
Sbjct: 121 IVWKGLLENTDRDRIRRLMRLKPPTDF 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Brachypodium distachyon]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/146 (62%), Positives = 103/146 (70%), Gaps = 38/146 (26%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFANS+GNIL+ER                                      SV I
Sbjct: 729 MILAVLFANSDGNILIERFHGVPAEERLHWRSFLVKLGSENLKGAKNEELLVASHKSVSI 788

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYT++GDV +++VGKDEYDELAL+EVIFA+TSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 789 VYTMIGDVCLYIVGKDEYDELALSEVIFAVTSAVKDVCGKPPTERLFLDKYGRICLCLDE 848

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNE 108
           IVWKGLLENTEKDR+RRL+RLKPP E
Sbjct: 849 IVWKGLLENTEKDRVRRLIRLKPPVE 874

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa Japonica Group] gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 103/146 (70%), Gaps = 38/146 (26%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLF+NS+GNIL+ER                                      SV I
Sbjct: 738 MILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVSI 797

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYT++GDV +++VGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 798 VYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLDE 857

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNE 108
           IVWKGLLENTEKDR+RRL+RLKPP E
Sbjct: 858 IVWKGLLENTEKDRVRRLIRLKPPVE 883

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054422|ref|XP_002298252.1| predicted protein [Populus trichocarpa] gi|118481741|gb|ABK92810.1| unknown [Populus trichocarpa] gi|222845510|gb|EEE83057.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 103/147 (70%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFAN EGNIL+ER                                      SVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVRNEELLVASHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSIF+VGKDEYDELAL EVIFAITSA+KD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFIVGKDEYDELALTEVIFAITSALKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVWKGLLENT+K+R+RRL RLKPP EF
Sbjct: 121 IVWKGLLENTDKERVRRLTRLKPPTEF 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726776|ref|NP_001236882.1| uncharacterized protein LOC100306313 [Glycine max] gi|255628175|gb|ACU14432.1| unknown [Glycine max]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 105/147 (71%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           M+LAVLFAN+EGNIL+ER                                      SVYI
Sbjct: 1   MVLAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK+P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKLPSERLFLDKYGRICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVW+G LENTEKDRI+RL+RLKPP EF
Sbjct: 121 IVWQGYLENTEKDRIKRLIRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437134|ref|XP_004136347.1| PREDICTED: uncharacterized protein LOC101206672 [Cucumis sativus]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 103/147 (70%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           M+LAVL ANS GNILVER                                      SVYI
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYT LGDV+++VVGKDEYDELALAEVIF ITSA+KDACGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVW G+LENTEKDRI+RL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442985|ref|XP_002268544.1| PREDICTED: uncharacterized protein LOC100245686 [Vitis vinifera] gi|297743445|emb|CBI36312.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 102/147 (69%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           M+LAVLFANSEGNILVER                                      SVYI
Sbjct: 1   MLLAVLFANSEGNILVERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSI+VVGKDEYDELALAEVIF I S+VKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALAEVIFVIISSVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVWKG+LEN +KDRIRRL RLKPP EF
Sbjct: 121 IVWKGMLENADKDRIRRLTRLKPPTEF 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723349|ref|NP_001236252.1| uncharacterized protein LOC100305755 [Glycine max] gi|255626529|gb|ACU13609.1| unknown [Glycine max]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 104/147 (70%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFAN+EGNIL+ER                                      SVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVW+G LENTEKDRI+RL+RLKPP EF
Sbjct: 121 IVWQGYLENTEKDRIKRLIRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555439|ref|XP_003546039.1| PREDICTED: uncharacterized protein LOC100781055 [Glycine max]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 103/147 (70%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFAN EGNIL+ER                                      SVYI
Sbjct: 1   MILAVLFANVEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSI+VVGK+EYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKEEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVWKG LENTEKDRI+RLVRLKPP EF
Sbjct: 121 IVWKGYLENTEKDRIKRLVRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494714|gb|AFK35423.1| unknown [Lotus japonicus]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 103/147 (70%), Gaps = 38/147 (25%)

Query: 1   MILAVLFANSEGNILVER--------------------------------------SVYI 22
           MILAVLFAN+EGNIL+ER                                      SVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 23  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 82
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120

Query: 83  IVWKGLLENTEKDRIRRLVRLKPPNEF 109
           IVWKG LENTE DRI+RL+RLKPP EF
Sbjct: 121 IVWKGYLENTENDRIKRLLRLKPPTEF 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2037713	147	AT1G15370 "AT1G15370" [Arabido	0.917	0.680	0.77	6.7e-45
DICTYBASE|DDB_G0293086	178	copZb "coatomer protein comple	0.752	0.460	0.329	5.8e-06
UNIPROTKB|G4MQP4	203	MGG_09294 "Coatomer subunit ze	0.926	0.497	0.257	1.7e-05
POMBASE|SPCC576.07	190	ret3 "coatomer zeta subunit (p	0.908	0.521	0.262	3.9e-05
GENEDB_PFALCIPARUM|PFD0745c	208	PFD0745c "nonclathrin coat pro	0.816	0.427	0.255	5.2e-05
UNIPROTKB|Q8I1T3	208	PFD0745c "Nonclathrin coat pro	0.816	0.427	0.255	5.2e-05
TAIR|locus:2133569	181	AT4G08520 [Arabidopsis thalian	0.889	0.535	0.288	0.00017
TAIR|locus:2206026	177	AT1G60970 [Arabidopsis thalian	0.825	0.508	0.3	0.00035
ASPGD|ASPL0000004271	200	AN6080 [Emericella nidulans (t	0.853	0.465	0.252	0.00038
SGD|S000005931	189	RET3 "Zeta subunit of the coat	0.899	0.518	0.234	0.00072

TAIR|locus:2037713 AT1G15370 "AT1G15370" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 77/100 (77%), Positives = 89/100 (89%)

Query:     9 NSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERL 68
             N E  +   +SVYIVYT+LGDVSIF+VGKDEYDELALAE I+ IT+AVKD CGK PTER+
Sbjct:    47 NEELLVACHKSVYIVYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERV 106

Query:    69 FLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
             FLDKYG+ICLCLDEIVW GLLENT+KDRI+RL+RLKPP+E
Sbjct:   107 FLDKYGRICLCLDEIVWNGLLENTDKDRIKRLIRLKPPSE 146

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0293086 copZb "coatomer protein complex zeta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 105 (42.0 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:    15 LVERSVYIVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----IPTERLF 69
             +++  V ++ +   DV IFVVG     +ELAL +V+  + S  K AC      + T++ F
Sbjct:    59 IIDNKV-VIGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTF 117

Query:    70 LDKYGKICLCLDEIVWKGLLENTEKDRI 97
             L+ Y  I L +DEIV  G++   +++ I
Sbjct:   118 LENYALIRLYIDEIVSDGIIFEVDEETI 145

GO:0006810 "transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|G4MQP4 MGG_09294 "Coatomer subunit zeta" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 103 (41.3 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 26/101 (25%), Positives = 52/101 (51%)

Query:     8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
             A   G+I++  +  ++Y +  DV ++VVG  + +E+ L  VI A+  ++     +   +R
Sbjct:    70 AKQTGDIILYDNRIVLYKMESDVMMYVVGSVDENEVLLYNVILALRDSLHLLFKQSVDKR 129

Query:    68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
               ++ Y  + L +DEIV  G++  T+   I + V   P  +
Sbjct:   130 TIIENYDLVSLAIDEIVDDGIILETDPTIIVQRVSKAPTQD 170

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC576.07 ret3 "coatomer zeta subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 99 (39.9 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 26/99 (26%), Positives = 50/99 (50%)

Query:    10 SEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLF 69
             ++ +IL      +V   + DV  ++VG  E +E+ L E + +I  A++     +P +R  
Sbjct:    59 TQNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTL 118

Query:    70 LDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
             L+ Y ++ + +DE +  G++  TE   I   V   P +E
Sbjct:   119 LENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSE 157

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0030126 "COPI vesicle coat" evidence=ISO

GENEDB_PFALCIPARUM|PFD0745c PFD0745c "nonclathrin coat protein zeta2-cop-related protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 99 (39.9 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query:     3 LAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGK 62
             L + ++N    +L+ + V +  +V  D+ I+++G D  +E+ L E+I  +  A+ +    
Sbjct:    78 LGLNYSNETEILLLNKYVILCLSV-NDIVIYIIGDDNDNEIILYEIIETVHQALNNITNN 136

Query:    63 IPTERLFLDKYGKICLCLDEIVWKGLLENT 92
                ++  +DK   + L LDEI   G++  T
Sbjct:   137 HIGKKQLIDKLDSVYLILDEIADSGIIMET 166

GO:0030126 "COPI vesicle coat" evidence=ISS

UNIPROTKB|Q8I1T3 PFD0745c "Nonclathrin coat protein zeta2-cop-related protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 99 (39.9 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 23/90 (25%), Positives = 47/90 (52%)

Query:     3 LAVLFANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGK 62
             L + ++N    +L+ + V +  +V  D+ I+++G D  +E+ L E+I  +  A+ +    
Sbjct:    78 LGLNYSNETEILLLNKYVILCLSV-NDIVIYIIGDDNDNEIILYEIIETVHQALNNITNN 136

Query:    63 IPTERLFLDKYGKICLCLDEIVWKGLLENT 92
                ++  +DK   + L LDEI   G++  T
Sbjct:   137 HIGKKQLIDKLDSVYLILDEIADSGIIMET 166

GO:0030126 "COPI vesicle coat" evidence=ISS

TAIR|locus:2133569 AT4G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 28/97 (28%), Positives = 46/97 (47%)

Query:     8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
             A +E  I +  S  +VY    D+  FV G +  +EL L+ V+     AV         + 
Sbjct:    55 ARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKM 114

Query:    68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104
               L+    I LCLDE+V +G++  T+ + I   V ++
Sbjct:   115 EALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQ 151

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2206026 AT1G60970 [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 27/90 (30%), Positives = 43/90 (47%)

Query:     8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
             A +E  +    +  +VY  + D+  FV G +E +EL LA V+  +  AV         +R
Sbjct:    51 ARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKR 110

Query:    68 LFLDKYGKICLCLDEIVWKGLLENTEKDRI 97
               LD    I L  DEI+  G++  T+ + I
Sbjct:   111 EALDNLDLIFLSFDEIIDGGIVLETDANVI 140

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

ASPGD|ASPL0000004271 AN6080 [Emericella nidulans (taxid:162425)]

 Score = 91 (37.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 24/95 (25%), Positives = 49/95 (51%)

Query:    14 ILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKY 73
             IL +  + +V+ +  DV ++VVG  E +E+ L  V+ ++  A+         +R  ++ Y
Sbjct:    75 ILYDNRI-VVFKLESDVMLYVVGGAEENEVLLYNVVLSLRDALGILFKGATDKRTIVENY 133

Query:    74 GKICLCLDEIVWKGLLENTEKDRIR-RLVRLKPPN 107
               + L +DE++  G++  T+   I  R+ R   P+
Sbjct:   134 DLVALAIDELIDDGIILETDPVLIASRVSRAPQPD 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

SGD|S000005931 RET3 "Zeta subunit of the coatomer complex (COPI)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 88 (36.0 bits), Expect = 0.00072, P = 0.00072
 Identities = 23/98 (23%), Positives = 45/98 (45%)

Query:    11 EGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFL 70
             +  IL+     ++Y    D++I++V   E +E+ L +   AI  A+         ++   
Sbjct:    62 DSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQ 121

Query:    71 DKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
             + Y  + L +DE +  G++  T+ + I   V   P NE
Sbjct:   122 ENYDMVLLAIDETIDNGVILETDSNTIASRVSKPPTNE 159

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0030126 "COPI vesicle coat" evidence=ISS;IMP

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	1e-05

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 22  IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 81
           ++   L DV +++V   E +E  L +V   I +A+         +R   + Y +I L +D
Sbjct: 71  VMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVD 130

Query: 82  EIVWKGLLENTEKDRIRRLVRLKPPNE 108
           E + +G++  T+ D I   V   P  E
Sbjct: 131 ETIDEGVILETKSDEIADRVPKPPNFE 157

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	99.97
KOG0936	182	consensus Clathrin adaptor complex, small subunit	99.97
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	99.96
KOG0934	145	consensus Clathrin adaptor complex, small subunit	99.95
KOG0935	143	consensus Clathrin adaptor complex, small subunit	99.95
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.87
KOG2740	418	consensus Clathrin-associated protein medium chain	98.85
KOG0938	446	consensus Adaptor complexes medium subunit family	98.8
KOG0937	424	consensus Adaptor complexes medium subunit family	97.85
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	96.71
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	96.2

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=7.1e-32  Score=190.53  Aligned_cols=104  Identities=30%  Similarity=0.489  Sum_probs=98.4

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l   45 (109)
                      ||+|+++.|++|++++.+                                   ++.+|||+++|++|+++|+.+|||+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~   80 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL   80 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence            999999999999999999                                   899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCC
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  105 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~  105 (109)
                      ++++|+++++|+.+|+ ++||+++++||++++++|||++|+|+++|||+++|++|++++-
T Consensus        81 ~e~l~~~v~~l~~~~~-~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~  139 (141)
T PF01217_consen   81 LEFLHRLVEVLDDYFG-NVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQD  139 (141)
T ss_dssp             HHHHHHHHHHHHHHHS-S-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCC
T ss_pred             HHHHHHhhhhhhhhhc-cccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhh
Confidence            9999999999999998 6999999999999999999999999999999999999998863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=99.97  E-value=3.3e-31  Score=189.35  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=96.5

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l   45 (109)
                      ||||+|++|+||++||.+                                   +.++||||||+|+|.++.+.++|||++
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~i   80 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELII   80 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchH
Confidence            899999999999999999                                   679999999999888888889999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhh
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVR  102 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~  102 (109)
                      +++||.|+|+||++|++ |||+|+++||.+++.+|||++.+|.+.|+|+..+++++.
T Consensus        81 L~lIh~FVE~lDr~Fgn-VCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~  136 (152)
T COG5030          81 LELIHNFVEILDRFFGN-VCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVY  136 (152)
T ss_pred             HHHHHHHHHHHHHHhcc-ceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHH
Confidence            99999999999999875 999999999999999999999999999999999998874

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-30  Score=187.27  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=101.7

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------------CeEEEEEEeccEEEEEEEcCC
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------------SVYIVYTVLGDVSIFVVGKDE   39 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------------~~~iVyr~~~dl~~~vvg~~~   39 (109)
                      |||+++++|.+|+.||.+                                         +.+++||+||.|||..+.|++
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s   80 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS   80 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence            999999999999999999                                         789999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCCCC
Q 033894           40 YDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPN  107 (109)
Q Consensus        40 eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~p~  107 (109)
                      |+||+++++||.|+|+||++|. +|||+|+++||++++.+|+|++.||+++||+.+.|+..+..+.|.
T Consensus        81 EsEL~iLDLIQvfVEtLDkCF~-nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkl  147 (182)
T KOG0936|consen   81 ESELGILDLIQVFVETLDKCFE-NVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKL  147 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHH-hhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchh
Confidence            9999999999999999999885 599999999999999999999999999999999999999877653

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-30  Score=186.92  Aligned_cols=97  Identities=31%  Similarity=0.456  Sum_probs=93.4

Q ss_pred             ecCCcEEEEcCeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCE
Q 033894            9 NSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGL   88 (109)
Q Consensus         9 ~~~g~i~l~~~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~Gi   88 (109)
                      +++.+|.+++|..+|||.+.||+|||+|+.+||||+|+++++++++|++.+++++|+|+.+++|||.++|++||+||+|+
T Consensus        51 kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~Gv  130 (175)
T KOG3343|consen   51 KTESEILLLDGNTVVYKSVIDLHFYVVGSEEENELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGV  130 (175)
T ss_pred             cccceeEEecCcEEEEEecccEEEEEecCcchhHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCce
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCHHHHHHHhhcCC
Q 033894           89 LENTEKDRIRRLVRLKP  105 (109)
Q Consensus        89 I~Etd~~~I~~rv~~k~  105 (109)
                      |+||||+.|++|++.+|
T Consensus       131 ILEtdp~~ia~rv~~~~  147 (175)
T KOG3343|consen  131 ILETDPNQIAQRVALRP  147 (175)
T ss_pred             EEecCHHHHHHHhccCC
Confidence            99999999999996554

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-28  Score=174.76  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=94.7

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l   45 (109)
                      ||||+|+.|+||++||.+                                   ++++||||||+|+|.+...+++|||+.
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~   80 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI   80 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence            899999999999999998                                   999999999999666666679999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhh
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVR  102 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~  102 (109)
                      +|+||.++|.||++|++ |||+|+++||++++.+|||++.+|.+.|+.++..+..++
T Consensus        81 LE~IH~~vE~lDkYFg~-VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~  136 (145)
T KOG0934|consen   81 LEFIHNYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIA  136 (145)
T ss_pred             HHHHHHHHHHHHHHhcc-ceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHH
Confidence            99999999999999975 999999999999999999999999999999998888774

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-27  Score=167.52  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             CceEEEeeecCCcEEEEc------------------------------------CeEEEEEEeccEEEEEEEcCCCCHHH
Q 033894            1 MILAVLFANSEGNILVER------------------------------------SVYIVYTVLGDVSIFVVGKDEYDELA   44 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~------------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~   44 (109)
                      ||+|+|+.|++|+.||.+                                    +.++.+|||++|+|.++.+..+||++
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnela   80 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELA   80 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHH
Confidence            899999999999999998                                    45566669999998888889999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhc
Q 033894           45 LAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL  103 (109)
Q Consensus        45 l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~  103 (109)
                      .++.||.|+|.|+.+|+| |||+|+++||.+|++++|||+.+|.|.||++..+++|+.+
T Consensus        81 yLe~IHlFVEvLd~fF~N-VCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~  138 (143)
T KOG0935|consen   81 YLEHIHLFVEVLDEFFHN-VCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLM  138 (143)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            999999999999999875 9999999999999999999999999999999999999865

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.5e-22  Score=145.79  Aligned_cols=99  Identities=27%  Similarity=0.350  Sum_probs=95.3

Q ss_pred             ecCCcEEEEcCeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCE
Q 033894            9 NSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGL   88 (109)
Q Consensus         9 ~~~g~i~l~~~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~Gi   88 (109)
                      .++.+|.+++++.++|+++-|+.+|++|+-+|||..+.+++..|..||..+++...+|+.+.+|||.+.+++||+||+|+
T Consensus        58 k~~~~Il~f~d~lV~~k~~~dv~~yiv~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gv  137 (187)
T COG5541          58 KDRESILMFYDRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGV  137 (187)
T ss_pred             cCccceeeEcceeeeeeeehhEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccce
Confidence            46789999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEeCHHHHHHHhhcCCCCC
Q 033894           89 LENTEKDRIRRLVRLKPPNE  108 (109)
Q Consensus        89 I~Etd~~~I~~rv~~k~p~~  108 (109)
                      |+||+++.|++|+ .|||+.
T Consensus       138 ilet~s~~ia~rv-~K~p~~  156 (187)
T COG5541         138 ILETKSDEIADRV-PKPPNF  156 (187)
T ss_pred             EeecChHHHHHhC-CCCCCc
Confidence            9999999999999 898874

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=9.4e-09  Score=83.68  Aligned_cols=104  Identities=23%  Similarity=0.412  Sum_probs=86.3

Q ss_pred             CceEEEeeecCCcEEEEc----------------------------------CeEEEEEEeccEEEEEEEcC-CCCHHHH
Q 033894            1 MILAVLFANSEGNILVER----------------------------------SVYIVYTVLGDVSIFVVGKD-EYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~----------------------------------~~~iVyr~~~dl~~~vvg~~-~eNEL~l   45 (109)
                      ||+++.+.|++|++.+..                                  .+--.+.-+.+..+++..+. +---|..
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~~   80 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLMV   80 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCChhH
Confidence            899999999999998876                                  34445555666656666554 4447999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCCCC
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPN  107 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~p~  107 (109)
                      .|+++.+++++..+|++ .++..+-+|++.++.+||||+|.|.-.-|+++.+-+.+  +||+
T Consensus        81 iefL~rv~dv~~eyFg~-~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i--~pps  139 (418)
T KOG2740|consen   81 IEFLHRVVDVLLEYFGG-LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELI--PPPS  139 (418)
T ss_pred             HHHHHHHHHHHHHHhcc-cCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhc--CChH
Confidence            99999999999999985 99999999999999999999999999999997766665  4553

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=6.9e-08  Score=78.49  Aligned_cols=103  Identities=20%  Similarity=0.315  Sum_probs=97.0

Q ss_pred             CceEEEeeecCCcEEEEc--------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHHHH
Q 033894            1 MILAVLFANSEGNILVER--------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALAEV   48 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~--------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~   48 (109)
                      ||-++++.|-.|++.+.+                                +...+|-+..+|++..+..++.|=.+..|+
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eF   80 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEF   80 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHH
Confidence            899999999999999988                                678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcC
Q 033894           49 IFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK  104 (109)
Q Consensus        49 i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k  104 (109)
                      +-.+.+.+..+|++ .+|..+-+||-.+|=+||||+|-|+...|++++....++.|
T Consensus        81 l~kl~avm~aYfgk-~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~  135 (446)
T KOG0938|consen   81 LYKLDAVMNAYFGK-DREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQK  135 (446)
T ss_pred             HHHHHHHHHHHhcc-cchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhh
Confidence            99999999999985 89999999999999999999999999999999998888655

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00024  Score=59.05  Aligned_cols=90  Identities=13%  Similarity=0.190  Sum_probs=78.3

Q ss_pred             EEEEcCeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeC
Q 033894           14 ILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTE   93 (109)
Q Consensus        14 i~l~~~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd   93 (109)
                      +...++...+|-+..++++.+.+..+-|=..++++++.+++.+..+|+ .+.|..+.+|+..++=.|||+.|=|+.+-|+
T Consensus        47 ~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~  125 (424)
T KOG0937|consen   47 FLVHDGSRFIHIKHSNLYLVAGTRPNVSAALVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTD  125 (424)
T ss_pred             eEEeCCceEEEEeecceEEEEEeccCCCHHHHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccch
Confidence            334447889999999998888887899999999999999999999997 6999999999999999999999999997777


Q ss_pred             HHHHHHHhhcC
Q 033894           94 KDRIRRLVRLK  104 (109)
Q Consensus        94 ~~~I~~rv~~k  104 (109)
                      ++.+-+.+.++
T Consensus       126 s~iL~~yi~~~  136 (424)
T KOG0937|consen  126 SEILKNYITQK  136 (424)
T ss_pred             HHHHHHHhccc
Confidence            76666666544

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=96.71  E-value=0.022  Score=42.97  Aligned_cols=79  Identities=13%  Similarity=0.108  Sum_probs=69.9

Q ss_pred             CeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHH
Q 033894           19 SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRI   97 (109)
Q Consensus        19 ~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I   97 (109)
                      ...++|+..+++.|..|++.+||=++.-.+++.++..|...++.-..-..++.+-|.+..+|+.+.-.|-.+=.|.+.+
T Consensus       103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~  181 (189)
T PF15001_consen  103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFV  181 (189)
T ss_pred             CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHH
Confidence            5689999999999999999999999999999999999987775423347888899999999999999999998887764

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.048  Score=46.09  Aligned_cols=86  Identities=22%  Similarity=0.319  Sum_probs=72.5

Q ss_pred             EEEEcCeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeC
Q 033894           14 ILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTE   93 (109)
Q Consensus        14 i~l~~~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd   93 (109)
                      ..-.++++-||+..-.+|+.++...+.|=|-=++.|+-|-.....+|. .++|+.+++|-=-...+.||+|-=|+=..++
T Consensus        48 ~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~TL~Lfskvipey~~-slde~eI~~~~FelifAFDEivsLGyre~v~  126 (512)
T KOG2635|consen   48 FVETDSVRYVYQPLDNLYIVLITTKQSNILEDLETLRLFSKVIPEYCS-SLDEKEILENAFELIFAFDEIVSLGYRENVN  126 (512)
T ss_pred             EEecccEEEEEEecccEEEEEEeccccchhhHHHHHHHHHHhchhhhh-hhhHHHHHHhhhhhhhccchhhhhccccccc
Confidence            333338899999999999999999999999999999999999999997 5999999999888889999999999655555


Q ss_pred             HHHHHHH
Q 033894           94 KDRIRRL  100 (109)
Q Consensus        94 ~~~I~~r  100 (109)
                      -..|-..
T Consensus       127 laQikty  133 (512)
T KOG2635|consen  127 LAQIKTY  133 (512)
T ss_pred             HHHhhhh
Confidence            4444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	6e-14
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	1e-05
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	5e-05

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score = 62.7 bits (152), Expect = 6e-14
 Identities = 21/97 (21%), Positives = 45/97 (46%)

Query: 8   ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
             ++  I +   + +VY    D+  +V+G    +EL L  V+  +  ++     K   +R
Sbjct: 53  HRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKR 112

Query: 68  LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104
             L+    + L +DEIV  G++  ++  ++   V L+
Sbjct: 113 ALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALR 149

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 9   NSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERL 68
               + L  R + +VY     +      + + +EL   E+I      +    G +  E  
Sbjct: 44  PKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSV-CELD 102

Query: 69  FLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVR 102
            +  + K    LDE +  G +++T K  + + + 
Sbjct: 103 IIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIE 136

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 38.8 bits (90), Expect = 5e-05
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 18  RSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKIC 77
           R+  I+Y     +   +      + LA  E I      + +    +  E   +  + K+ 
Sbjct: 53  RNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNV-CELDLVFNFYKVY 111

Query: 78  LCLDEIVWKGLLENTEKDRIRRLV 101
             +DE+   G +  T + ++ + +
Sbjct: 112 TVVDEMFLAGEIRETSQTKVLKQL 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	99.96
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	99.96
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.91
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.9

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=2.8e-32  Score=196.01  Aligned_cols=106  Identities=23%  Similarity=0.388  Sum_probs=98.3

Q ss_pred             CceEEEeeecCCcEEEEc----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHH
Q 033894            1 MILAVLFANSEGNILVER----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALA   46 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~   46 (109)
                      ||+|+++.|++|+.++.+                                  ++++|||+++||+|+++++.++||++++
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~il   91 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLM   91 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCCCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHH
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHH
Confidence            899999999999999987                                  7899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCCC
Q 033894           47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP  106 (109)
Q Consensus        47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~p  106 (109)
                      ++||.++|+|+.+|++++||+++++||++++.+|||++|+|+++|||++.|++|++++..
T Consensus        92 e~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~  151 (153)
T 3tjz_C           92 TVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE  151 (153)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccC
Confidence            999999999999996679999999999999999999999999999999999999988754

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.96  E-value=5.3e-29  Score=178.93  Aligned_cols=103  Identities=17%  Similarity=0.284  Sum_probs=99.5

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l   45 (109)
                      ||+|+++.|++|++++.+                                   ++++|||++++|+|+++++.++||+++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~   80 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT   80 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            999999999999999998                                   789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcC
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK  104 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k  104 (109)
                      +++||.++++|+.+|++ +||.++.+||++++.+|||++|+|+++|||++.|.+++..+
T Consensus        81 le~L~~~vevl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~  138 (158)
T 1w63_Q           81 LELIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQA  138 (158)
T ss_dssp             HHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcc-CCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcc
Confidence            99999999999999975 99999999999999999999999999999999999999754

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=99.96  E-value=1.8e-28  Score=172.88  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=98.5

Q ss_pred             CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894            1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL   45 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l   45 (109)
                      ||+|+++.|++|++++.+                                   ++++|||++++|+|+++++.++||+++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            999999999999999998                                   889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhc
Q 033894           46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL  103 (109)
Q Consensus        46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~  103 (109)
                      +++||.++++|+.+|+ ++||+++.+||++++.+|||++|+|+++||++..|++++..
T Consensus        81 le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~  137 (142)
T 2vgl_S           81 LEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLM  137 (142)
T ss_dssp             HHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHh
Confidence            9999999999999997 59999999999999999999999999999999999999854

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.91  E-value=3.3e-24  Score=173.45  Aligned_cols=104  Identities=19%  Similarity=0.294  Sum_probs=98.8

Q ss_pred             CceEEEeeecCCcEEEEc---------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHHH
Q 033894            1 MILAVLFANSEGNILVER---------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALAE   47 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~---------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~e   47 (109)
                      ||+|+++.|++|++++.+                                 ++++|||++++|+|+++++.++||+++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le   80 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE   80 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence            999999999999999998                                 78999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCC
Q 033894           48 VIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  105 (109)
Q Consensus        48 ~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~  105 (109)
                      +||.|+++|+.+|++ +||++|.+||++++.+|||++|+|+++|||++.+.+++.+++
T Consensus        81 ~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~  137 (435)
T 2vgl_M           81 FLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQG  137 (435)
T ss_dssp             HHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccc
Confidence            999999999999984 999999999999999999999999999999999888875543

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.90  E-value=6e-24  Score=171.43  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=98.9

Q ss_pred             CceEEEeeecCCcEEEEc----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHH
Q 033894            1 MILAVLFANSEGNILVER----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALA   46 (109)
Q Consensus         1 mi~~~l~~~~~g~i~l~~----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~   46 (109)
                      ||+|+++.|++|++++.+                                  +++++|+++++|+|+++++.++||++++
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l   81 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVF   81 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHH
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence            899999999999999887                                  7899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCC
Q 033894           47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  105 (109)
Q Consensus        47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~  105 (109)
                      ++||.++++|+.+|+ ++||+++.+||++++.+|||++|+|+++|||++.|.+++.+++
T Consensus        82 e~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~  139 (423)
T 1w63_M           82 SFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG  139 (423)
T ss_dssp             HHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred             HHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence            999999999999996 5999999999999999999999999999999999999986654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	2e-10
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	1e-09

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	99.96
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	99.93