Citrus Sinensis ID: 033895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Secondary Structure (PSIPRED)
ccccccEEccEEEEEEccccccEEEEEEEEEEEccccEEEEEEcccccccccccccccccccEEEEEEEEEEEEcccEEEEEEEEEcccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEcEEEEEEEccccccEEEEEEEEEcccccccEEEEEcccccccccHHHccccccEcccccEEEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mskdpirageIVVFnvdgreipiVHRVIKVherqdtgevevltkgdnnygddrlLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Flexible Loop (DISEMBL)
mskdpirageivvfnvdgreipivhrvikvherqdtgevevltkgdnnygdDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Low Complexity Region (SEG)
MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Disordered region (IsUnstruct)
*******AGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVIT***
Disordered Region (DISOPRED)
***DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSK*
Disordered Region (DISEMBL)
MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Disordered Region (DISPRO)
***DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q9WTR7	192	Signal peptidase complex	yes	no	0.972	0.552	0.607	8e-32
Q5RC30	192	Signal peptidase complex	yes	no	0.972	0.552	0.607	1e-31
Q9BY50	192	Signal peptidase complex	yes	no	0.972	0.552	0.607	1e-31
Q9D8V7	192	Signal peptidase complex	yes	no	0.972	0.552	0.607	1e-31
P13679	192	Signal peptidase complex	yes	no	0.972	0.552	0.607	1e-31
Q9R0P6	179	Signal peptidase complex	no	no	0.834	0.508	0.630	2e-28
P42667	179	Signal peptidase complex	no	no	0.834	0.508	0.619	5e-28
Q5R9C7	179	Signal peptidase complex	no	no	0.834	0.508	0.619	5e-28
P67812	179	Signal peptidase complex	no	no	0.834	0.508	0.619	5e-28
P67811	179	Signal peptidase complex	no	no	0.834	0.508	0.619	5e-28

>sp|Q9WTR7|SC11C_RAT Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct: 86  EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9

>sp|Q5RC30|SC11C_PONAB Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct: 86  EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct: 86  EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9D8V7|SC11C_MOUSE Signal peptidase complex catalytic subunit SEC11C OS=Mus musculus GN=Sec11c PE=2 SV=3

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct: 86  EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P13679|SC11C_CANFA Signal peptidase complex catalytic subunit SEC11C OS=Canis familiaris GN=SEC11C PE=1 SV=3

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct: 86  EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct: 145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9R0P6|SC11A_MOUSE Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus GN=Sec11a PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR LY QGQ W
Sbjct: 74  EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 94
           L+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P42667|SC11A_RAT Signal peptidase complex catalytic subunit SEC11A OS=Rattus norvegicus GN=Sec11a PE=2 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 1/92 (1%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR LY QGQ W
Sbjct: 74  EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 94
           L+++ ++GRA GF+PY+G VTI+M + P   Y
Sbjct: 133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFSY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q5R9C7|SC11A_PONAB Signal peptidase complex catalytic subunit SEC11A OS=Pongo abelii GN=SEC11A PE=2 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ W
Sbjct: 74  EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 94
           L+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67812|SC11A_HUMAN Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens GN=SEC11A PE=1 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ W
Sbjct: 74  EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 94
           L+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P67811|SC11A_CANFA Signal peptidase complex catalytic subunit SEC11A OS=Canis familiaris GN=SEC11A PE=1 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 75/92 (81%), Gaps = 1/92 (1%)

Query: 3   KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
           +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ W
Sbjct: 74  EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query: 63  LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKY 94
           L+++ ++GRA GF+PY+G VTI+M + P  KY
Sbjct: 133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFKY 164

Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
224070829	180	predicted protein [Populus trichocarpa]	1.0	0.605	0.972	6e-55
317106733	180	JHL06P13.9 [Jatropha curcas]	1.0	0.605	0.972	6e-55
118483871	180	unknown [Populus trichocarpa]	1.0	0.605	0.963	2e-54
224054124	180	predicted protein [Populus trichocarpa]	1.0	0.605	0.963	2e-54
449468994	180	PREDICTED: signal peptidase complex cata	1.0	0.605	0.963	3e-54
255553143	180	Microsomal signal peptidase 18 kDa subun	1.0	0.605	0.954	4e-54
356561967	180	PREDICTED: signal peptidase complex cata	1.0	0.605	0.954	5e-54
225443007	180	PREDICTED: signal peptidase complex cata	1.0	0.605	0.944	5e-54
363808256	180	uncharacterized protein LOC100807064 [Gl	1.0	0.605	0.954	6e-54
255637768	180	unknown [Glycine max]	1.0	0.605	0.944	1e-53

>gi|224070829|ref|XP_002303254.1| predicted protein [Populus trichocarpa] gi|222840686|gb|EEE78233.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (553), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 108/109 (99%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106733|dbj|BAJ53229.1| JHL06P13.9 [Jatropha curcas]

 Score =  217 bits (553), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/109 (97%), Positives = 108/109 (99%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483871|gb|ABK93826.1| unknown [Populus trichocarpa]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIR GEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054124|ref|XP_002298104.1| predicted protein [Populus trichocarpa] gi|222845362|gb|EEE82909.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIR GEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468994|ref|XP_004152206.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus] gi|449484166|ref|XP_004156804.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Cucumis sativus]

 Score =  215 bits (547), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/109 (96%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER DTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERPDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553143|ref|XP_002517614.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis] gi|223543246|gb|EEF44778.1| Microsomal signal peptidase 18 kDa subunit, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIR GEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNYGDDRLLYAQGQ
Sbjct: 72  MSKDPIRTGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAQGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561967|ref|XP_003549247.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C-like [Glycine max]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNYGDDRLLYA GQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443007|ref|XP_002269449.1| PREDICTED: signal peptidase complex catalytic subunit SEC11C [Vitis vinifera] gi|297743433|emb|CBI36300.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/109 (94%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEV+VLTKGDNNYGDDRLLYA GQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVDVLTKGDNNYGDDRLLYAHGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKP+IKY+LIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPLIKYVLIGALGLLVITSKD 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808256|ref|NP_001242493.1| uncharacterized protein LOC100807064 [Glycine max] gi|255635143|gb|ACU17928.1| unknown [Glycine max]

 Score =  214 bits (544), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 107/109 (98%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNYGDDRLLYA GQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637768|gb|ACU19206.1| unknown [Glycine max]

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/109 (94%), Positives = 106/109 (97%)

Query: 1   MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
           MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER+DTGEV+VLTKGDNNYGDDRLLYA GQ
Sbjct: 72  MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHEREDTGEVDVLTKGDNNYGDDRLLYAHGQ 131

Query: 61  LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
           LWL+R HIMGRAVGFLPYVGWVTIIMTEKPIIKYI IGALGLLVITSKD
Sbjct: 132 LWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYIFIGALGLLVITSKD 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2035139	180	AT1G52600 [Arabidopsis thalian	1.0	0.605	0.935	1.2e-51
TAIR|locus:2093202	180	AT3G15710 [Arabidopsis thalian	1.0	0.605	0.853	1.9e-44
RGD|628665	192	Sec11c "SEC11 homolog C (S. ce	0.972	0.552	0.607	2e-31
UNIPROTKB|Q9WTR7	192	Sec11c "Signal peptidase compl	0.972	0.552	0.607	2e-31
UNIPROTKB|Q2KI36	192	SEC11C "SEC11 homolog C (S. ce	0.972	0.552	0.607	2.6e-31
UNIPROTKB|P13679	192	SEC11C "Signal peptidase compl	0.972	0.552	0.607	2.6e-31
UNIPROTKB|Q9BY50	192	SEC11C "Signal peptidase compl	0.972	0.552	0.607	2.6e-31
UNIPROTKB|F1SM56	192	SEC11C "Uncharacterized protei	0.972	0.552	0.607	2.6e-31
MGI|MGI:1913536	192	Sec11c "SEC11 homolog C (S. ce	0.972	0.552	0.607	2.6e-31
MGI|MGI:1929464	179	Sec11a "SEC11 homolog A (S. ce	0.972	0.592	0.579	1.1e-30

TAIR|locus:2035139 AT1G52600 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 102/109 (93%), Positives = 107/109 (98%)

Query:     1 MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
             MSKDPIRAGEIVVFNVDGR+IPIVHRVIKVHER++TGEV+VLTKGDNNYGDDRLLYA+GQ
Sbjct:    72 MSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNYGDDRLLYAEGQ 131

Query:    61 LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             LWL R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   132 LWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2093202 AT3G15710 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 93/109 (85%), Positives = 98/109 (89%)

Query:     1 MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQ 60
             M+ +PIRAGEIVVF+VDGREIPIVHR IKVHER DT  V+VLTKGDNN  DD  LYA+GQ
Sbjct:    72 MTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNNDIDDIGLYAEGQ 131

Query:    61 LWLKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             LWL R HIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD
Sbjct:   132 LWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|628665 Sec11c "SEC11 homolog C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9WTR7 Sec11c "Signal peptidase complex catalytic subunit SEC11C" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRE 191

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q2KI36 SEC11C "SEC11 homolog C (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|P13679 SEC11C "Signal peptidase complex catalytic subunit SEC11C" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

UNIPROTKB|Q9BY50 SEC11C "Signal peptidase complex catalytic subunit SEC11C" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0006465 "signal peptide processing" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006412 "translation" evidence=TAS

UNIPROTKB|F1SM56 SEC11C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

MGI|MGI:1913536 Sec11c "SEC11 homolog C (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ W
Sbjct:    86 EDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNW 144

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GFLPYVG VTIIM + P  KY L+  +G  V+  ++
Sbjct:   145 LEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRE 191

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

MGI|MGI:1929464 Sec11a "SEC11 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/107 (57%), Positives = 84/107 (78%)

Query:     3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLW 62
             +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR LY QGQ W
Sbjct:    74 EDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGLYKQGQHW 132

Query:    63 LKRQHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 109
             L+++ ++GRA GF+PY+G VTI+M + P  KY ++  LGL V+  ++
Sbjct:   133 LEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFVLVHRE 179

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86JD4	SEC11_DICDI	3, ., 4, ., 2, 1, ., 8, 9	0.5137	0.9908	0.6033	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	4e-07
TIGR02228	158	TIGR02228, sigpep_I_arch, signal peptidase I, arch	7e-07
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	5e-06

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 43.7 bits (104), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 19/72 (26%)

Query: 4  DPIRAGEIVVFNVDGR-EIPIVHRVIKVHERQDTGEVEVLTKGDN--NYGDDRLLYAQGQ 60
             + G++VVF   G    PI+ RVI                GDN  N  D R       
Sbjct: 30 REPKRGDVVVFKSPGDPGKPIIKRVI-----------GYFVLGDNRNNSLDSRYWGP--- 75

Query: 61 LWLKRQHIMGRA 72
            +    I+G+ 
Sbjct: 76 --VPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|131283 TIGR02228, sigpep_I_arch, signal peptidase I, archaeal type

 Score = 44.7 bits (106), Expect = 7e-07
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 17/101 (16%)

Query: 6   IRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKR 65
           I+ G+++ +   G   P+ HRVI+++     GE+  +TKGDNN   D          +  
Sbjct: 61  IQVGDVITYKSPGFNTPVTHRVIEINNSG--GELGFITKGDNNPAPD-------GEPVPS 111

Query: 66  QHIMGRAVGF-LPYVGWVTIIMTEKPIIKYILIGALGLLVI 105
           ++++G+ +GF +P+ G+V +   +        IGA  LL+I
Sbjct: 112 ENVIGKYLGFTIPFAGYVLVFAPQA-------IGAAALLII 145

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I. Length = 158

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 2  SKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDN-NYGDDRLLYAQGQ 60
          S    + G+IVVF + G E   V RVI +      GE      GDN N  D R+      
Sbjct: 25 SSYEPKRGDIVVFRLPGGE-LTVKRVIGLP-----GEGHYFLLGDNPNSPDSRIDGP--- 75

Query: 61 LWLKRQHIMGRA 72
                 I+G  
Sbjct: 76 ---PELDIVGVV 84

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	99.97
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.9
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	98.99
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	97.91
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	96.84
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	96.84
KOG0171	176	consensus Mitochondrial inner membrane protease, s	96.56
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	96.03
KOG1568	174	consensus Mitochondrial inner membrane protease, s	95.64
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	95.45
PRK13838	176	conjugal transfer pilin processing protease TraF;	93.99
PF05582	287	Peptidase_U57: YabG peptidase U57; InterPro: IPR00	88.06
PRK10861	324	signal peptidase I; Provisional	83.09
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	83.03
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	80.23

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-32  Score=197.52  Aligned_cols=107  Identities=61%  Similarity=1.060  Sum_probs=102.2

Q ss_pred             CCCCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcccccE
Q 033895            2 SKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGW   81 (109)
Q Consensus         2 ~~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP~lG~   81 (109)
                      .++.+++|||++|+.+|+++||+|||++.++.. +|+..|+||||||..+|..+|++||.|+++++|+|++.+++||+|+
T Consensus        74 ~~~p~~vGdivVf~vegR~IPiVHRviK~he~~-~~~~~~LTKGDNN~~dD~~Ly~~gq~~L~r~~Ivg~~~G~~Py~G~  152 (180)
T KOG3342|consen   74 NEDPIRVGDIVVFKVEGREIPIVHRVIKQHEKS-NGHIKFLTKGDNNAVDDRGLYAQGQNWLERKDIVGRVRGYLPYVGM  152 (180)
T ss_pred             CCCcceeccEEEEEECCccCchhHHHHHHhccc-CCcEEEEecCCCCcccchhcccccccceeccceeeEEeeccccceE
Confidence            357799999999999999999999999999864 5888899999999999999999999999999999999999999999


Q ss_pred             EEEEeccchhHHHHHHHHHHHHhhhcCC
Q 033895           82 VTIIMTEKPIIKYILIGALGLLVITSKD  109 (109)
Q Consensus        82 v~~~~~~~~~~~~~i~~~l~~~~l~~~e  109 (109)
                      +++|+++.|.+|+++++.+|+++|++||
T Consensus       153 itI~mnd~p~~KyalL~~lGl~vL~~rE  180 (180)
T KOG3342|consen  153 ITIWMNDYPKLKYALLGGLGLSVLLHRE  180 (180)
T ss_pred             EEEEecCCcchHHHHHHHHHHheeeccC
Confidence            9999999999999999999999999998

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.90  E-value=2.1e-23  Score=150.92  Aligned_cols=91  Identities=25%  Similarity=0.503  Sum_probs=76.1

Q ss_pred             CCCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEE-EEcccccE
Q 033895            3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAV-GFLPYVGW   81 (109)
Q Consensus         3 ~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~-~~IP~lG~   81 (109)
                      +++++.||||+|+.++++.+++|||+++.++  +|+.+|+||||||..+|+++       ++++|++|++. +++||+||
T Consensus        58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~~~--~g~~~~~tkGDnN~~~D~~~-------v~~~~IiG~v~~~~iP~~G~  128 (158)
T TIGR02228        58 PNDIQVGDVITYKSPGFNTPVTHRVIEINNS--GGELGFITKGDNNPAPDGEP-------VPSENVIGKYLGFTIPFAGY  128 (158)
T ss_pred             cCCCCCCCEEEEEECCCCccEEEEEEEEECC--CCcEEEEEEecCCCCCCccc-------CCHHHEEEEEEEeccCcccE
Confidence            4689999999999887557999999999876  36788999999999999876       88999999998 88999999


Q ss_pred             EEEEeccchhHHHHHHHHHHHH
Q 033895           82 VTIIMTEKPIIKYILIGALGLL  103 (109)
Q Consensus        82 v~~~~~~~~~~~~~i~~~l~~~  103 (109)
                      +..++++..+.. +++++.+++
T Consensus       129 ~~~~~~~~~~~~-~~~~~p~~~  149 (158)
T TIGR02228       129 VLVFAPQAIGAA-ALLIIPGIG  149 (158)
T ss_pred             EEEEeecCchhh-hhHHhHHHH
Confidence            999999977644 333443333

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=98.99  E-value=9.8e-10  Score=70.50  Aligned_cols=52  Identities=35%  Similarity=0.570  Sum_probs=43.8

Q ss_pred             CCCcCcEEEEeeCCc-cccEEEEEEEEEecCCCCeeEEEEeCCC--CCCCChhhhccCccccccceEeceE
Q 033895            5 PIRAGEIVVFNVDGR-EIPIVHRVIKVHERQDTGEVEVLTKGDN--NYGDDRLLYAQGQLWLKRQHIMGRA   72 (109)
Q Consensus         5 ~~~~GDIIvf~~~g~-~~~itHRVi~v~~~~~~g~~~~iTKGD~--N~~~D~~~y~~~~~~V~~~~v~G~v   72 (109)
                      +++.||+|+|+.++. +.+++||+++           |.|||||  |..+|+...+     ++.++++|++
T Consensus        31 ~~~~GDiv~~~~~~~~~~~~vkRv~~-----------~~~~gDn~~ns~d~~~~g~-----~~~~~i~G~~   85 (85)
T cd06530          31 EPKRGDVVVFKSPGDPGKPIIKRVIG-----------YFVLGDNRNNSLDSRYWGP-----VPEDDIVGKV   85 (85)
T ss_pred             CCCCCCEEEEeCCCCCCCEEEEEEEE-----------EEEeeCCCCCCCccCCcCC-----CcHHHeEEeC
Confidence            689999999998764 4689999988           7899999  9898887644     6788999874

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=97.91  E-value=5.2e-05  Score=49.04  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CCcCcEEEEeeCC-ccccEEEEEEEEEecCCCCeeEEEEeCCCCCC-CChhhhccCccccccceEeceEE
Q 033895            6 IRAGEIVVFNVDG-REIPIVHRVIKVHERQDTGEVEVLTKGDNNYG-DDRLLYAQGQLWLKRQHIMGRAV   73 (109)
Q Consensus         6 ~~~GDIIvf~~~g-~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~-~D~~~y~~~~~~V~~~~v~G~v~   73 (109)
                      .+.||+++|+.++ .+..++||++.....      .+...|||+.. .|+..+.    +++..+|+|+++
T Consensus        30 ~~~Gdivv~~~~~~~~~~~vkRv~~~~~~------~~~l~~dN~~~~~d~~~~g----~v~~~~I~G~v~   89 (90)
T TIGR02754        30 PPIGNVVVVRHPLQPYGLIIKRLAAVDDN------GLFLLGDNPKASTDSRQLG----PVPRSLLLGKVL   89 (90)
T ss_pred             CCCCeEEEEecCCCCcceEEEEeeEEcCC------eEEEeCCCCCCCCcccccC----CCcHHHEEEEEE
Confidence            4569999998764 236899999988643      25567998754 4443333    378899999985

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=96.84  E-value=0.0044  Score=38.38  Aligned_cols=40  Identities=33%  Similarity=0.423  Sum_probs=30.7

Q ss_pred             CCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCC
Q 033895            6 IRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGD   51 (109)
Q Consensus         6 ~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~   51 (109)
                      ++.||++++..++ +.+++||+......     ..+..++||.+.+
T Consensus        29 ~~~G~iv~~~~~~-~~~~ikrl~~~~~~-----~~~~l~~~N~~~~   68 (84)
T cd06462          29 PKRGDIVVFRLPG-GELTVKRVIGLPGE-----GHYFLLGDNPNSP   68 (84)
T ss_pred             CcCCEEEEEEcCC-CcEEEEEEEEECCC-----CEEEEECCCCCCC
Confidence            7889999998776 35999999987541     2589999993333

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=96.84  E-value=0.0061  Score=43.75  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             CCCCcCcEEEEeeCC-ccccEEEEEEEEEecC----C-----C------------------------------CeeEEEE
Q 033895            4 DPIRAGEIVVFNVDG-REIPIVHRVIKVHERQ----D-----T------------------------------GEVEVLT   43 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g-~~~~itHRVi~v~~~~----~-----~------------------------------g~~~~iT   43 (109)
                      .+++.||||+|+.++ .+...++||++.-.+.    +     |                              .+..|--
T Consensus        50 ~~~~rGDiVvf~~~~~~~~~~iKRVig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fv  129 (163)
T TIGR02227        50 SDPKRGDIVVFKDPDDNKNIYVKRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFV  129 (163)
T ss_pred             CCCCCCcEEEEecCCCCCceeEEEEEecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEE
Confidence            678999999999763 3358999999642110    0     0                              0112334


Q ss_pred             eCCC-CCCCChhhhccCccccccceEeceEEEEc
Q 033895           44 KGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGFL   76 (109)
Q Consensus        44 KGD~-N~~~D~~~y~~~~~~V~~~~v~G~v~~~I   76 (109)
                      -||| +++.|.-.+.    +|+.++|+|++.+.+
T Consensus       130 lGDnr~~S~DSR~~G----~V~~~~I~Gk~~~~~  159 (163)
T TIGR02227       130 LGDNRDNSLDSRYFG----FVPIDDIIGKVSFVF  159 (163)
T ss_pred             ECCCCCCCcccCCcC----cCCHHHeEEEEEEEE
Confidence            4887 5777876543    389999999998753

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0042  Score=45.86  Aligned_cols=65  Identities=26%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             CCCcCcEEEEeeC-CccccEEEEEEEEEec--C-----C----------------CCeeEEEEeCCC-CCCCChhhhccC
Q 033895            5 PIRAGEIVVFNVD-GREIPIVHRVIKVHER--Q-----D----------------TGEVEVLTKGDN-NYGDDRLLYAQG   59 (109)
Q Consensus         5 ~~~~GDIIvf~~~-g~~~~itHRVi~v~~~--~-----~----------------~g~~~~iTKGD~-N~~~D~~~y~~~   59 (109)
                      ..++||||+++.| .....++-||++.+.+  .     .                .|+ .| -.||| |+.-|.--|.+ 
T Consensus        65 ~~~~gDIVi~~sP~~~~~~~cKRIva~eGD~v~v~~~~~~~n~~~e~~~~~i~VP~Gh-Vf-v~GDN~~nS~DSr~yGp-  141 (176)
T KOG0171|consen   65 KPQVGDIVIAKSPPDPKEHICKRIVAMEGDLVEVHDGPLVVNDLVEKFSTPIRVPEGH-VF-VEGDNRNNSLDSRNYGP-  141 (176)
T ss_pred             CCCCCCEEEEeCCCCchhhhhheeeccCCceEEEecCCcccchhhhhccceeeccCce-EE-EecCCCCCcccccccCC-
Confidence            4589999999876 3335799999987765  0     0                011 13 34898 88889877765 


Q ss_pred             ccccccceEeceEEEE
Q 033895           60 QLWLKRQHIMGRAVGF   75 (109)
Q Consensus        60 ~~~V~~~~v~G~v~~~   75 (109)
                         ++...|.||+++.
T Consensus       142 ---lP~glI~gRvv~r  154 (176)
T KOG0171|consen  142 ---LPMGLIQGRVVFR  154 (176)
T ss_pred             ---CchhheeeeEEEE
Confidence               8999999999976

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=96.03  E-value=0.014  Score=35.32  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=26.0

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCC
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDN   47 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~   47 (109)
                      .+++.||+|+|..++.....+||++....      ..++.+.+|
T Consensus        23 ~~~~~gdivv~~~~~~~~~~iKrv~~~~~------~~~~~~~~n   60 (70)
T PF00717_consen   23 SEPKDGDIVVVKIDGDEELYIKRVVGEPG------GIILISSNN   60 (70)
T ss_dssp             S---TTSEEEEEETTEESEEEEEEEEETT------EEEEE-SST
T ss_pred             CCCccCeEEEEEECCceeeEEEEEEEeCC------CEEEEeccC
Confidence            46789999999988765689999996542      257777666

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.015  Score=42.95  Aligned_cols=65  Identities=25%  Similarity=0.377  Sum_probs=42.2

Q ss_pred             CCCcCcEEEEeeC-CccccEEEEEEEEEecC-----C--------CCeeEEEEeCCCC-CCCChhhhccCccccccceEe
Q 033895            5 PIRAGEIVVFNVD-GREIPIVHRVIKVHERQ-----D--------TGEVEVLTKGDNN-YGDDRLLYAQGQLWLKRQHIM   69 (109)
Q Consensus         5 ~~~~GDIIvf~~~-g~~~~itHRVi~v~~~~-----~--------~g~~~~iTKGD~N-~~~D~~~y~~~~~~V~~~~v~   69 (109)
                      .+..||||+|++| ..+..++-||.+++.+.     .        .| .|.+. |||- ..-|...|.|    |+-..|.
T Consensus        68 ~~~rGDiVvl~sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpkg-hcWVe-gDn~~hs~DSntFGP----VS~gli~  141 (174)
T KOG1568|consen   68 KVSRGDIVVLKSPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPKG-HCWVE-GDNQKHSYDSNTFGP----VSTGLIV  141 (174)
T ss_pred             eeccCCEEEEeCCCChhheeeeeeecccccEeccCCCCCCceecCCC-cEEEe-cCCcccccccCccCC----cchhhee
Confidence            3668999999987 44468999999987641     0        12 23433 6652 3445555443    7777788


Q ss_pred             ceEEEE
Q 033895           70 GRAVGF   75 (109)
Q Consensus        70 G~v~~~   75 (109)
                      |+++..
T Consensus       142 grai~i  147 (174)
T KOG1568|consen  142 GRAIYI  147 (174)
T ss_pred             eeEEEE
Confidence            888753

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=95.45  E-value=0.063  Score=39.21  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=22.9

Q ss_pred             CCCCCcCcEEEEeeCCccc--------------------cEEEEEEEEEe
Q 033895            3 KDPIRAGEIVVFNVDGREI--------------------PIVHRVIKVHE   32 (109)
Q Consensus         3 ~~~~~~GDIIvf~~~g~~~--------------------~itHRVi~v~~   32 (109)
                      ..+++.||+|+|+.+....                    ..+-||+.+-.
T Consensus        44 ~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpG   93 (171)
T TIGR02771        44 SKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPG   93 (171)
T ss_pred             CCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCC
Confidence            4689999999999764321                    68999998643

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=93.99  E-value=0.26  Score=36.21  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=21.7

Q ss_pred             EEEeCCCCCCCChhhhccCccccccceEeceEE
Q 033895           41 VLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAV   73 (109)
Q Consensus        41 ~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~   73 (109)
                      |..-||++.+-|.-.+.    +|+.++|+|++.
T Consensus       141 ~fvlgd~~~S~DSRy~G----~V~~~~I~G~a~  169 (176)
T PRK13838        141 LFLHSSFAGSYDSRYFG----PVPASGLLGLAR  169 (176)
T ss_pred             EEEECCCCCCCcccccC----cccHHHeEEEEE
Confidence            34448888888886654    388999999985

>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.06  E-value=1.6  Score=34.71  Aligned_cols=37  Identities=30%  Similarity=0.547  Sum_probs=31.4

Q ss_pred             CCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCC
Q 033895            6 IRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGD   46 (109)
Q Consensus         6 ~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD   46 (109)
                      +++||||+=++-+.  =|+.||+++.+.  +|+..++-||-
T Consensus         1 mkiGDIV~RKSYg~--DI~FrIidI~~~--~g~~~aiLkG~   37 (287)
T PF05582_consen    1 MKIGDIVARKSYGK--DILFRIIDIKEE--NGKKIAILKGL   37 (287)
T ss_pred             CCCCCEEEeeecCC--ceEEEEEEEEcC--CCceEEEEeCC
Confidence            57999999987665  489999999985  47889999994

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].

>PRK10861 signal peptidase I; Provisional

Probab=83.09  E-value=1.7  Score=34.99  Aligned_cols=30  Identities=23%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             CCCCcCcEEEEeeCC-ccccEEEEEEEEEec
Q 033895            4 DPIRAGEIVVFNVDG-REIPIVHRVIKVHER   33 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g-~~~~itHRVi~v~~~   33 (109)
                      .+.+.||||+|+.|. .+...+-|||..-.+
T Consensus       124 ~~p~RGDIVVF~~P~~~~~~yIKRVIGlPGD  154 (324)
T PRK10861        124 GHPKRGDIVVFKYPEDPKLDYIKRVVGLPGD  154 (324)
T ss_pred             CCCCCCCEEEEecCCCCCCcEEEEeeecCCc
Confidence            567899999998764 346799999986543

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=83.03  E-value=5.5  Score=24.16  Aligned_cols=41  Identities=27%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             CCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCCh
Q 033895            5 PIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDR   53 (109)
Q Consensus         5 ~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~   53 (109)
                      .++.||++++..++  ...+.|+.....      ..+.-+.||...++.
T Consensus        27 ~~~~g~i~~~~~~~--~~~ikr~~~~~~------~~~~L~s~N~~~~~~   67 (81)
T cd06529          27 TPRDGDIVVARLDG--ELTVKRLQRRGG------GRLRLISDNPAYPPI   67 (81)
T ss_pred             CCCCCCEEEEEECC--EEEEEEEEECCC------CcEEEEeCCCCCCCE
Confidence            46667777776655  367888776442      247788998655543

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=80.23  E-value=1.2  Score=30.88  Aligned_cols=24  Identities=42%  Similarity=0.549  Sum_probs=16.4

Q ss_pred             CCcCcEEEEeeCCcc-ccEEEEEEE
Q 033895            6 IRAGEIVVFNVDGRE-IPIVHRVIK   29 (109)
Q Consensus         6 ~~~GDIIvf~~~g~~-~~itHRVi~   29 (109)
                      ...||+|+|+.+... .+.+||...
T Consensus        85 ~~~GD~i~~~~~~~~~~~~~~~~~~  109 (166)
T COG0681          85 GLRGDIVVFKDDRLYVVPIIPRVYG  109 (166)
T ss_pred             cCCCCEEEEECCEEEeecccCcchh
Confidence            467999999875321 356777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	96.05
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	95.11
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	95.05
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	93.74
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	90.48
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	82.08

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=96.05  E-value=0.028  Score=36.64  Aligned_cols=57  Identities=12%  Similarity=0.223  Sum_probs=38.3

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEE
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGF   75 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~   75 (109)
                      .+++.||++++..++ +...++|++..  .   +  .+..+.||...++... .      ..-+|+|+++.+
T Consensus        45 ~~~~~Gdivv~~~~~-~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~~-~------~~~~IiG~Vv~~  101 (109)
T 1kca_A           45 QAVEPGDFCIARLGG-DEFTFKKLIRD--S---G--QVFLQPLNPQYPMIPC-N------ESCSVVGKVIAS  101 (109)
T ss_dssp             SCCCTTCEEEEECST-TCEEEEEEEEE--T---T--EEEEECSSTTSCCEEC-C------TTCEEEEEEEEE
T ss_pred             CcCCCCCEEEEEECC-CeEEEEEEEEe--C---C--EEEEEECCCCCCCEEc-C------CCcEEEEEEEEE
Confidence            457889999988765 35789999862  2   3  3557799766555322 1      246799999865

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=95.11  E-value=0.09  Score=35.10  Aligned_cols=57  Identities=12%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEE
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGF   75 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~   75 (109)
                      .+++.||++++..++ +...++|++..  .   +  .+.-+.||...++... .      ..-+|+|+++.+
T Consensus        76 ~~~~~Gdivv~~~~~-~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~~-~------~~~~IiG~Vv~~  132 (133)
T 2hnf_A           76 QAVEPGDFCIARLGG-DEFTFAKLIRD--S---G--QVFLQPLNPQYPMIPC-N------ESCSVVGKVIAS  132 (133)
T ss_dssp             SCCCTTSEEEEEETT-TEEEEEEEEEE--T---T--EEEEECSSTTSCCEEC-S------TTEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECC-CEEEEEEEEEe--C---C--eEEEEECCCCCCCEEc-C------CCCEEEEEEEEE
Confidence            457788888887765 34788999852  2   3  3667789766554322 1      345789998753

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=95.05  E-value=0.053  Score=35.30  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcc
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLP   77 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP   77 (109)
                      .+++.|||+++..++.  ..++|+...      +  .+..+.||...++... +.    -..-+|+|+++..+-
T Consensus        54 ~~~~~gdivv~~~~~~--~~vKr~~~~------~--~~~L~s~N~~y~~~~i-~~----~~~~~IiG~Vv~~~r  112 (116)
T 1umu_A           54 ITASHGDIVIAAVDGE--FTVKKLQLR------P--TVQLIPMNSAYSPITI-SS----EDTLDVFGVVIHVVK  112 (116)
T ss_dssp             SCCCTTCEEEEEETTE--EEEEEEECS------S--SCEEECSSTTSCCEEC-CT----TSCEEEEEEEEEEEC
T ss_pred             CCCCCCCEEEEEECCE--EEEEEEEeC------C--cEEEECCCCCCCCEEc-CC----CCeEEEEEEEEEEEE
Confidence            3577888888877653  788888762      2  3667889765554322 11    012479999986643

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=93.74  E-value=0.25  Score=34.64  Aligned_cols=65  Identities=25%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcccccE
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGW   81 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP~lG~   81 (109)
                      .+++.|||+++..++.  ..++|+..  ..   +  .+.-+.||...++- .++..   -..-.|+|+|+.++-...|
T Consensus       137 ~~~~~G~i~v~~~~~~--~~vKrl~~--~~---~--~~~l~s~N~~y~~~-~~~~~---~~~~~IiG~Vv~~~r~~~~  201 (202)
T 1jhf_A          137 QDVRNGQVVVARIDDE--VTVKRLKK--QG---N--KVELLPENSEFKPI-VVDLR---QQSFTIEGLAVGVIRNGDW  201 (202)
T ss_dssp             SCCCTTSEEEEEETTE--EEEEEEEE--ET---T--EEEEECSSTTCCCE-EEETT---TSCEEEEEEEEEEEEC---
T ss_pred             CCcCCCeEEEEEECCE--EEEEEEEE--eC---C--EEEEEECCCCCCCE-EccCC---CCceEEEEEEEEEEEcccc
Confidence            3567788888876553  78899983  22   2  36667887554442 21100   0123689999876654443

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=90.48  E-value=0.35  Score=35.58  Aligned_cols=28  Identities=21%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CCCCcCcEEEEeeCC-ccccEEEEEEEEE
Q 033895            4 DPIRAGEIVVFNVDG-REIPIVHRVIKVH   31 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g-~~~~itHRVi~v~   31 (109)
                      .+++.||||+|+.+. .+...++||+..-
T Consensus        48 ~~~~rGDIvvf~~p~~~~~~~iKRViglp   76 (248)
T 1b12_A           48 GHPKRGDIVVFKYPEDPKLDYIKRAVGLP   76 (248)
T ss_dssp             CCCCTTCEEEEECTTCTTSEEEEEEEECT
T ss_pred             CCCCCCcEEEEEeCCCCCceEEEEEEeeC
Confidence            568999999999764 3468999999853

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=82.08  E-value=2.2  Score=30.14  Aligned_cols=58  Identities=12%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895            4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL   76 (109)
Q Consensus         4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I   76 (109)
                      .+++.||++++..++ +...+.|+..  ..   |.  ++.+.||...++- .+.      ..-.|+|+|+.+.
T Consensus       172 ~~~~~g~ivv~~~~~-~~~~vKrl~~--~~---~~--~~L~s~N~~y~~~-~~~------~~~~IiG~Vv~~~  229 (236)
T 3bdn_A          172 QAVEPGDFCIARLGG-DEFTFKKLIR--GS---GQ--VFLQPLNPQYPMI-PCN------ESCSVVGKVIASQ  229 (236)
T ss_dssp             SCCCTTSEEEEESTT-TCCCCEEEEC--CS---SS--CEEECSSTTSCCB-C--------CCCEEEEEEEECC
T ss_pred             CCCCCCcEEEEEECC-CeEEEEEEEE--cC---Cc--EEEEeCCCCCCCe-ecC------CCcEEEEEEEEEE
Confidence            356678877776542 2467888875  12   32  4456786544442 211      2357899998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	93.84
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	87.41
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	82.77

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.16  Score=34.97  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             CCCcCcEEEEeeCC-ccccEEEEEEEE
Q 033895            5 PIRAGEIVVFNVDG-REIPIVHRVIKV   30 (109)
Q Consensus         5 ~~~~GDIIvf~~~g-~~~~itHRVi~v   30 (109)
                      ..+.||||+|+.+. .....+.|++..
T Consensus        48 ~~~rgdivvf~~p~~~~~~~ikR~ig~   74 (247)
T d1b12a_          48 HPKRGDIVVFKYPEDPKLDYIKRAVGL   74 (247)
T ss_dssp             CCCTTCEEEEECTTCTTSEEEEEEEEC
T ss_pred             CcccCceeeecCCCCCCccccccccCC
Confidence            56899999998763 335788888863

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=1.2  Score=27.24  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             CCCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895            3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL   76 (109)
Q Consensus         3 ~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I   76 (109)
                      ..+.+.|||++...+|.  ..+.|+..   .   ++..+  +-+ |+.-+|....++    ..-.|+|+++.+|
T Consensus        46 ~~~~~~g~ivva~i~ge--~~vKrl~~---~---~~~~L--~~~-N~~y~~i~i~~~----~~~~I~GvVv~vi  104 (105)
T d1umua_          46 AITASHGDIVIAAVDGE--FTVKKLQL---R---PTVQL--IPM-NSAYSPITISSE----DTLDVFGVVIHVV  104 (105)
T ss_dssp             TSCCCTTCEEEEEETTE--EEEEEEEC---S---SSCEE--ECS-STTSCCEECCTT----SCEEEEEEEEEEE
T ss_pred             ccccccCcEEEEEECCE--EEEEEEEE---C---CcEEE--ECC-CCCCCCEEcCCC----CCEEEEEEEEEEE
Confidence            35667788888877764  66777642   2   23334  334 555554432211    1235899998765

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.77  E-value=2.1  Score=26.51  Aligned_cols=61  Identities=26%  Similarity=0.340  Sum_probs=34.0

Q ss_pred             CCCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895            3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL   76 (109)
Q Consensus         3 ~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I   76 (109)
                      ..+++.||++++..++.  ..+-|+..   .+  ++  +.-+-||...++ ..+...+   ..=.|+|+|+.++
T Consensus        64 ~~~~~~G~ivv~~~~ge--~~vKrl~~---~~--~~--~~L~s~N~~y~p-i~~~~~~---~~~~IiG~Vv~vi  124 (126)
T d1jhfa2          64 TQDVRNGQVVVARIDDE--VTVKRLKK---QG--NK--VELLPENSEFKP-IVVDLRQ---QSFTIEGLAVGVI  124 (126)
T ss_dssp             CSCCCTTSEEEEEETTE--EEEEEEEE---ET--TE--EEEECSSTTCCC-EEEETTT---SCEEEEEEEEEEE
T ss_pred             cccccCCCEEEEEECCE--EEEEEEEE---cC--CE--EEEecCCcCCCC-eEccCCC---CcEEEEEEEEEEE
Confidence            35677888888877664  56666654   21  32  555667644433 2221100   1126889998764