Citrus Sinensis ID: 033956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MAAELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Secondary Structure (PSIPRED)
cEEEEccccEEEEccccccccccccEEEccccccccEEEEEEEEEEccccccccEEEEEccEEEEEEEccccccccEEEEccccccccEEEEcEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccHcccHHccHHHHHHHHcccccccEEEEccEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEHHHcHHccccccccEEEEHHHHHHccc
Coil and Loop (DISEMBL)
maaelvgprlyschncrnhvaLHDDIISKafqgrngraFLFShamnvvvgpkedrhlltglhtvadiyCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Flexible Loop (DISEMBL)
maaelvgprlySCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEAsqkykegkfifekskiakenw
Low Complexity Region (SEG)
MAAELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Disordered region (IsUnstruct)
*****VGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIF**********
Disordered Region (DISOPRED)
MA*ELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Disordered Region (DISEMBL)
MAAELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Disordered Region (DISPRO)
****LVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9T096	106	Protein yippee-like At4g2	yes	no	0.981	0.990	0.838	7e-49
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.915	0.823	0.653	2e-32
O60688	119	Protein yippee-like 1 OS=	yes	no	0.915	0.823	0.632	4e-32
Q9DG42	119	Protein yippee-like 1 OS=	N/A	no	0.915	0.823	0.632	4e-32
Q65Z59	119	Protein yippee-like 1 OS=	N/A	no	0.915	0.823	0.632	4e-32
Q9ESC7	118	Protein yippee-like 1 OS=	yes	no	0.915	0.830	0.632	5e-32
Q65Z54	119	Protein yippee-like 3 OS=	N/A	no	0.915	0.823	0.642	5e-32
Q5XID5	127	Protein yippee-like 4 OS=	no	no	0.915	0.771	0.622	5e-32
Q65Z93	127	Protein yippee-like 4 OS=	no	no	0.915	0.771	0.622	5e-32
Q96NS1	127	Protein yippee-like 4 OS=	no	no	0.915	0.771	0.622	6e-32

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 95/105 (90%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           A+ +GPRLYSC NCRNHV LHDDIISKAFQGR GRAFLFSHAMN+VVGPKEDR+LLTGLH
Sbjct: 2   AQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVADI C DC E LGWKYERA+E SQKYKEGKFIFEK+KI KE+W
Sbjct: 62  TVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 76/98 (77%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C   LGWKYE+AFE SQKYKEGKFI E S + K+N
Sbjct: 79  CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|O60688|YPEL1_HUMAN Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q9DG42|YPEL1_COTJA Protein yippee-like 1 OS=Coturnix coturnix japonica GN=YPEL1 PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

Coturnix coturnix japonica (taxid: 93934)

>sp|Q65Z59|YPEL1_CHLAE Protein yippee-like 1 OS=Chlorocebus aethiops GN=YPEL1 PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Chlorocebus aethiops (taxid: 9534)

>sp|Q9ESC7|YPEL1_MOUSE Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Mus musculus (taxid: 10090)

>sp|Q65Z54|YPEL3_ORYLA Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 76/98 (77%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct: 19  RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C +C   LGWKYE+AFE SQKYKEGK+I E S + K+N
Sbjct: 79  CENCHTTLGWKYEQAFELSQKYKEGKYIIELSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Oryzias latipes (taxid: 8090)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG +GRA+LF+  +NV  GP E R LLTGLH+VADI+
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C  C+  LGWKYE+AFE SQKYKEGK+I E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG +GRA+LF+  +NV  GP E R LLTGLH+VADI+
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C  C+  LGWKYE+AFE SQKYKEGK+I E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%)

Query: 9   RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
           R YSC +CR H+A HD++ISK+FQG +GRA+LF+  +NV  GP E R LLTGLH+VADI+
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 69  CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN 106
           C  C+  LGWKYE+AFE SQKYKEGK+I E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
351721698	106	uncharacterized protein LOC100527552 [Gl	0.981	0.990	0.904	3e-52
351727751	106	uncharacterized protein LOC100306443 [Gl	0.981	0.990	0.895	8e-52
388509814	106	unknown [Lotus japonicus]	0.981	0.990	0.895	2e-51
357153211	107	PREDICTED: protein yippee-like At4g27745	1.0	1.0	0.878	2e-51
388501512	106	unknown [Lotus japonicus]	0.981	0.990	0.876	1e-50
115488582	109	Os12g0484700 [Oryza sativa Japonica Grou	0.981	0.963	0.895	1e-50
77555722	106	Yippee-like protein At4g27740, putative	0.981	0.990	0.895	1e-50
224132694	106	predicted protein [Populus trichocarpa]	0.981	0.990	0.895	2e-50
224053739	106	predicted protein [Populus trichocarpa]	0.981	0.990	0.876	3e-50
242085524	106	hypothetical protein SORBIDRAFT_08g01487	0.981	0.990	0.885	5e-50

>gi|351721698|ref|NP_001237730.1| uncharacterized protein LOC100527552 [Glycine max] gi|255632600|gb|ACU16650.1| unknown [Glycine max]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 100/105 (95%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AEL+GPRLYSC NCRNHV+LHDDIISKAF GRNGRAFLFSHAMN+V GPKEDRHLLTGLH
Sbjct: 2   AELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVAGPKEDRHLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVAD+YC DCREVLGWKYERA+EASQKYKEGKFI EKSKIAKENW
Sbjct: 62  TVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIAKENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727751|ref|NP_001235124.1| uncharacterized protein LOC100306443 [Glycine max] gi|356509220|ref|XP_003523349.1| PREDICTED: protein yippee-like At4g27745-like [Glycine max] gi|255628561|gb|ACU14625.1| unknown [Glycine max]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AEL+GPRLYSC NCRNHV+LHDDIISKAF GRNGRAFLFSHAMN+V GPKEDRHLLTGLH
Sbjct: 2   AELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVAD+YC DCREVLGWKYERA+EASQKYKEGKFI EKSKI KENW
Sbjct: 62  TVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509814|gb|AFK42973.1| unknown [Lotus japonicus]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
            EL+GPRLYSC NCRNHV+LHDDIISKAFQG+NGRAFLFSHAMNVV GPKEDRHLLTGLH
Sbjct: 2   GELIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVAD+YC DCREVLGWKYERA+EASQKYKEGKFI EKSKI KENW
Sbjct: 62  TVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153211|ref|XP_003576376.1| PREDICTED: protein yippee-like At4g27745-like [Brachypodium distachyon]

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/107 (87%), Positives = 101/107 (94%)

Query: 1   MAAELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTG 60
           MAAELVGPR+YSC NCRNHV LHDD++SKAFQGRNGRAFLFSHAMNVVVG KEDR L+TG
Sbjct: 1   MAAELVGPRVYSCCNCRNHVCLHDDVVSKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTG 60

Query: 61  LHTVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           LHTVADIYCS+CREVLGWKYERA+E +QKYKEGKFIFEKSKI KENW
Sbjct: 61  LHTVADIYCSECREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 107

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501512|gb|AFK38822.1| unknown [Lotus japonicus]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 98/105 (93%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
            E++GPRLYSC NCRNHV+LHDDIISKAFQG+NGRAFLFSHAMNVV GPKEDRHLLTGLH
Sbjct: 2   GEVIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TV D+YC DCREVLGWKYERA+EASQKYKEGKFI EKSKI KENW
Sbjct: 62  TVVDVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488582|ref|NP_001066778.1| Os12g0484700 [Oryza sativa Japonica Group] gi|113649285|dbj|BAF29797.1| Os12g0484700 [Oryza sativa Japonica Group]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AELVGPR+YSC NCRNHV LHDDIISKAFQGRNGRAFLFSHAMNVVVG KEDR L+TGLH
Sbjct: 5   AELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLH 64

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVADIYC+DCREVLGWKYERA+E +QKYKEGKFIFEKSKI KENW
Sbjct: 65  TVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77555722|gb|ABA98518.1| Yippee-like protein At4g27740, putative [Oryza sativa Japonica Group] gi|125536637|gb|EAY83125.1| hypothetical protein OsI_38341 [Oryza sativa Indica Group] gi|125579350|gb|EAZ20496.1| hypothetical protein OsJ_36103 [Oryza sativa Japonica Group] gi|215768213|dbj|BAH00442.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 99/105 (94%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AELVGPR+YSC NCRNHV LHDDIISKAFQGRNGRAFLFSHAMNVVVG KEDR L+TGLH
Sbjct: 2   AELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVADIYC+DCREVLGWKYERA+E +QKYKEGKFIFEKSKI KENW
Sbjct: 62  TVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 106

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132694|ref|XP_002321386.1| predicted protein [Populus trichocarpa] gi|222868382|gb|EEF05513.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/105 (89%), Positives = 100/105 (95%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AE VGPRLYSC NCRNHV+LHDDIISKAFQGR+GRAFLFSHAMN+VVGPKEDRHLLTGLH
Sbjct: 2   AEFVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLLTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVADI C+DCREVLGWKYERA+EASQKYKEGK+IFEK KI KENW
Sbjct: 62  TVADISCADCREVLGWKYERAYEASQKYKEGKYIFEKLKIVKENW 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053739|ref|XP_002297955.1| predicted protein [Populus trichocarpa] gi|222845213|gb|EEE82760.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 100/105 (95%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AE+VGPRLYSC NCRNHVALHDD+ISKAFQGR+GRAFLFSHAMNV+VGPKEDRHL+TGLH
Sbjct: 2   AEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVMVGPKEDRHLMTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVAD+ CSDCREVLGWKYERA+E +QKYKEGKFI EKSKI KENW
Sbjct: 62  TVADVSCSDCREVLGWKYERAYEETQKYKEGKFILEKSKIVKENW 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242085524|ref|XP_002443187.1| hypothetical protein SORBIDRAFT_08g014870 [Sorghum bicolor] gi|241943880|gb|EES17025.1| hypothetical protein SORBIDRAFT_08g014870 [Sorghum bicolor]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/105 (88%), Positives = 98/105 (93%)

Query: 3   AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
           AELVGPR+YSC  CRNHV LHDDIISKAFQGRNGRAFLFSHAMNVVVG KEDR L+TGLH
Sbjct: 2   AELVGPRVYSCCTCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLH 61

Query: 63  TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
           TVADIYC+DCREVLGWKYERA+E +QKYKEGKFIFEKSKI KENW
Sbjct: 62  TVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 106

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.981	0.990	0.838	1.4e-46
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.925	0.831	0.65	4.7e-32
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.943	0.782	0.633	7.7e-32
UNIPROTKB|A6QLE8	119	YPEL1 "YPEL1 protein" [Bos tau	0.925	0.831	0.63	9.8e-32
UNIPROTKB|E2RE07	119	YPEL1 "Uncharacterized protein	0.925	0.831	0.63	9.8e-32
UNIPROTKB|O60688	119	YPEL1 "Protein yippee-like 1"	0.925	0.831	0.63	9.8e-32
UNIPROTKB|F1RL01	119	YPEL1 "Uncharacterized protein	0.925	0.831	0.63	9.8e-32
MGI|MGI:1913303	118	Ypel1 "yippee-like 1 (Drosophi	0.925	0.838	0.63	9.8e-32
RGD|2321291	118	Ypel1 "yippee-like 1 (Drosophi	0.925	0.838	0.63	9.8e-32
ZFIN|ZDB-GENE-040808-41	119	ypel1 "yippee-like 1 (Drosophi	0.925	0.831	0.63	9.8e-32

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 88/105 (83%), Positives = 95/105 (90%)

Query:     3 AELVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLH 62
             A+ +GPRLYSC NCRNHV LHDDIISKAFQGR GRAFLFSHAMN+VVGPKEDR+LLTGLH
Sbjct:     2 AQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLH 61

Query:    63 TVADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKENW 107
             TVADI C DC E LGWKYERA+E SQKYKEGKFIFEK+KI KE+W
Sbjct:    62 TVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 65/100 (65%), Positives = 77/100 (77%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C   LGWKYE+AFE SQKYKEGKFI E S + K+N W
Sbjct:    79 CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDNGW 118

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 64/101 (63%), Positives = 73/101 (72%)

Query:     5 LVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTV 64
             L GP +  C NC+ H+ LHD +ISK FQGR+G AFLF    N+ VGP EDR L TG+H V
Sbjct:     9 LTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRTLTTGMHIV 68

Query:    65 ADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKE 105
             ADIYC DC E LGWKYE A E SQKYK GK+I EK+KI KE
Sbjct:    69 ADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKIQKE 109

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A6QLE8 YPEL1 "YPEL1 protein" [Bos taurus (taxid:9913)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|E2RE07 YPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|O60688 YPEL1 "Protein yippee-like 1" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0031641 "regulation of myelination" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RL01 YPEL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

MGI|MGI:1913303 Ypel1 "yippee-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

RGD|2321291 Ypel1 "yippee-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0031641 "regulation of myelination" evidence=IEA;ISO

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA;ISO

ZFIN|ZDB-GENE-040808-41 ypel1 "yippee-like 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/100 (63%), Positives = 78/100 (78%)

Query:     9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIY 68
             R YSC +CR H+A HD++ISK+FQG  GRA+LF+  +NV  GP E+R LLTGLH VADIY
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKEN-W 107
             C +C+  LGWKYE AFE+SQKYKEGKFI E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z59	YPEL1_CHLAE	No assigned EC number	0.6326	0.9158	0.8235	N/A	no
Q65Z58	YPEL2_CHLAE	No assigned EC number	0.6224	0.9158	0.8235	N/A	no
Q65Z54	YPEL3_ORYLA	No assigned EC number	0.6428	0.9158	0.8235	N/A	no
Q65Z57	YPEL3_CHLAE	No assigned EC number	0.6224	0.9158	0.8235	N/A	no
Q65Z95	YPEL2_MOUSE	No assigned EC number	0.6224	0.9158	0.8235	yes	no
Q9U3G6	YPL1_CAEEL	No assigned EC number	0.5940	0.9439	0.7372	yes	no
Q9T096	YIPL6_ARATH	No assigned EC number	0.8380	0.9813	0.9905	yes	no
O60688	YPEL1_HUMAN	No assigned EC number	0.6326	0.9158	0.8235	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.6530	0.9158	0.8235	yes	no
Q9ESC7	YPEL1_MOUSE	No assigned EC number	0.6326	0.9158	0.8305	yes	no
Q5RDN9	YPEL2_PONAB	No assigned EC number	0.6224	0.9158	0.8235	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.6122	0.9158	0.8596	yes	no
Q96QA6	YPEL2_HUMAN	No assigned EC number	0.6224	0.9158	0.8235	yes	no
Q2YDI3	YPEL2_BOVIN	No assigned EC number	0.6224	0.9158	0.8235	yes	no
Q9DG42	YPEL1_COTJA	No assigned EC number	0.6326	0.9158	0.8235	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI4G07320.1 annotation not avaliable (107 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	3e-57

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  171 bits (436), Expect = 3e-57
 Identities = 63/101 (62%), Positives = 77/101 (76%)

Query: 5   LVGPRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTV 64
           L G R+YSC +C+ H+ALH DIISK+F GR+GRA+LF+  +NVV G  EDR +LTGLHTV
Sbjct: 9   LTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQMLTGLHTV 68

Query: 65  ADIYCSDCREVLGWKYERAFEASQKYKEGKFIFEKSKIAKE 105
            DI+C  C   LGWKYE A+E SQKYKEGKFI E++ I K 
Sbjct: 69  RDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	100.0
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	95.97
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.98
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.92
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.56
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.4
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.55
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.4
PF14976	150	FAM72: FAM72 protein	89.67
COG0229	140	Conserved domain frequently associated with peptid	87.33
KOG0856	146	consensus Predicted pilin-like transcription facto	85.66

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=2.3e-51  Score=293.85  Aligned_cols=104  Identities=60%  Similarity=1.097  Sum_probs=99.3

Q ss_pred             eecC-CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            4 ELVG-PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         4 ~l~g-~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +|.+ ++.|+|++|+||||+++|||||+|+|++|+||||++|+||+.|+.|+|.|+||+|+|+||+|+.|++.|||||+.
T Consensus         8 ~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~~GWkYe~   87 (122)
T KOG3399|consen    8 MLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTGLGWKYEH   87 (122)
T ss_pred             HhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCCcceeeee
Confidence            3444 378999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccccceEEEEeccccccC-C
Q 033956           83 AFEASQKYKEGKFIFEKSKIAKEN-W  107 (107)
Q Consensus        83 A~e~sqkYKEGkfILE~~~i~~~~-w  107 (107)
                      |||+||||||||||||+++|.+++ |
T Consensus        88 a~e~sQkyKEGk~ilE~~~i~~~~g~  113 (122)
T KOG3399|consen   88 AYEKSQKYKEGKFILELAEIFKPEGW  113 (122)
T ss_pred             ccCchhhhcCcchHHHHHHhcCCCCc
Confidence            999999999999999999999875 5

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=100.00  E-value=2e-34  Score=195.09  Aligned_cols=89  Identities=53%  Similarity=1.037  Sum_probs=85.3

Q ss_pred             eEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceec----EEEeeeecccCCCceeeEEEeecc
Q 033956           10 LYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGL----HTVADIYCSDCREVLGWKYERAFE   85 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~----h~V~DI~C~~C~~~lGWkY~~A~e   85 (107)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|.||.    |+|+||+|++|++.|||||+.|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7888888999999999    999999999999999999999999


Q ss_pred             cccccccceEEEEeccccc
Q 033956           86 ASQKYKEGKFIFEKSKIAK  104 (107)
Q Consensus        86 ~sqkYKEGkfILE~~~i~~  104 (107)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999998863

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=95.97  E-value=0.0032  Score=44.89  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             eEEeecCcCCCCCCCCeeeeeecCCC----ceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeecc
Q 033956           10 LYSCHNCRNHVALHDDIISKAFQGRN----GRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFE   85 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk~F~G~~----G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e   85 (107)
                      .+.|++|.+.+++.+||-.-  .++|    .+.  |...+.+...|.+.....-+.+....|+|..|+..+|-.+..---
T Consensus         4 ~llC~kC~~~~C~~~DIr~i--e~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~   79 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKI--ENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGV   79 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEE--TTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTE
T ss_pred             EEECCCCCceeEchhheEEe--cCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCc
Confidence            48899999999999998764  1111    222  335666666666544445588899999999999999987754332


Q ss_pred             cccccccceEEEEec
Q 033956           86 ASQKYKEGKFIFEKS  100 (107)
Q Consensus        86 ~sqkYKEGkfILE~~  100 (107)
                      +==-.|.-.|+++..
T Consensus        80 ~LP~L~iksfvv~~~   94 (123)
T PF11648_consen   80 ELPCLKIKSFVVELE   94 (123)
T ss_dssp             EEEEE-GGGEEEEET
T ss_pred             cccEEEeeeeeeeec
Confidence            223445556664433

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.98  E-value=0.019  Score=41.52  Aligned_cols=72  Identities=19%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeeccc
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEA   86 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~   86 (107)
                      .-+|.|+.|.++|=+++.    -|....|=.-.+..+..-.+...+|..  -|+. -..|.|..|+..||=-......+
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~-R~Ev~C~~Cg~HLGHVF~DGp~~  106 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFS--HGMV-RTEVRCARCGSHLGHVFDDGPPP  106 (124)
T ss_dssp             SEEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEEC--TSSE-EEEEEETTTCCEEEEEESTSSTT
T ss_pred             CEEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEecccc--CCce-EEEEEecCCCCccccEeCCCCCC
Confidence            348999999999987653    466666665555555442333333332  2444 44899999999999776655543

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.92  E-value=0.028  Score=41.27  Aligned_cols=66  Identities=20%  Similarity=0.458  Sum_probs=43.3

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecc-cccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHA-MNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v-~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|+.|.++|-++++    -|....|=.-.+..+ -|. +...+|+.  -|+.. ..|.|..|+..||=-..
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~  104 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFD  104 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccC
Confidence            347999999999988765    355556655555555 232 22333332  24444 58999999999996554

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.56  E-value=0.032  Score=41.34  Aligned_cols=68  Identities=18%  Similarity=0.390  Sum_probs=44.2

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=++++    -|.-..|=.-.+..+..-.+...+|+  .-|+.. ..|.|..|+..||=-...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~R-tEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDT--SHGMVR-TEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             CeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeecc--CCCceE-EEEEeCCCCCccCcccCC
Confidence            448999999999988753    46666776665665532222223332  123322 589999999999976643

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.40  E-value=0.087  Score=38.02  Aligned_cols=64  Identities=23%  Similarity=0.466  Sum_probs=43.1

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|+.|.++|=++++    -|.-..|=.-.+..+-|. +...+|..   | + =..|.|..|+..||=-..
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G-R-RTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C-c-EEEEEeCCCCCccCcccC
Confidence            448999999999988764    466666655555555432 33334433   2 2 467999999999995543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.55  E-value=0.15  Score=41.44  Aligned_cols=64  Identities=23%  Similarity=0.450  Sum_probs=43.1

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|+.|+++|=++++    -|.-..|=.-.++.+.|-..- .++..   |+  =..|.|..|++.||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~~-~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVKR-LPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccEE-EEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            347999999999988664    465566655556666543322 22222   33  478999999999996654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.40  E-value=0.28  Score=42.76  Aligned_cols=68  Identities=13%  Similarity=0.170  Sum_probs=45.3

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|+++|=++++    -|....|=.-.+..+-+-.+....|.+  -|++. ..|.|..|+..||--...
T Consensus       416 ~G~y~c~~c~~pLf~s~~----Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        416 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             CEEEEecCCCCccccCcc----cccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCC
Confidence            448999999999988753    466666665555555433333333332  24444 389999999999976654

>PF14976 FAM72: FAM72 protein

Probab=89.67  E-value=0.68  Score=34.70  Aligned_cols=62  Identities=19%  Similarity=0.438  Sum_probs=39.4

Q ss_pred             eEEeecCcCCCCCCCCeeeeeecCCCceEEEeeccccccc----CCccceeeceec--------EEEeeeecccCCCcee
Q 033956           10 LYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVV----GPKEDRHLLTGL--------HTVADIYCSDCREVLG   77 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~----g~~~~r~m~TG~--------h~V~DI~C~~C~~~lG   77 (107)
                      +..|+.|.+-|+...-           ||.|..+ .|+.+    -||....-.+|.        =.++|+-|..|+..||
T Consensus        15 ~L~C~~C~~~l~~RgM-----------kAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vG   82 (150)
T PF14976_consen   15 ILCCKFCDQVLCNRGM-----------KAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVG   82 (150)
T ss_pred             EEECCCCCchhccchh-----------hheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeee
Confidence            4789999988876432           4555554 33331    122222223333        4899999999999999


Q ss_pred             eEEEee
Q 033956           78 WKYERA   83 (107)
Q Consensus        78 WkY~~A   83 (107)
                      +.....
T Consensus        83 YhV~~P   88 (150)
T PF14976_consen   83 YHVVVP   88 (150)
T ss_pred             eEEEEE
Confidence            887654

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=87.33  E-value=0.93  Score=33.63  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=43.8

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWK   79 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWk   79 (107)
                      +-+|.|+.|..+|-++++    -|....|=--.+.-+..-.+...+|+  .-|++.+ .|.|..|++.||=-
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGHV  104 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGHV  104 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCccccc
Confidence            348999999999987765    35555554444555544444444443  3455554 89999999999943

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.66  E-value=1  Score=33.58  Aligned_cols=66  Identities=18%  Similarity=0.419  Sum_probs=39.5

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecc-cccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHA-MNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v-~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|..|.++|-++.    .-|.-..|=--.|+.+ .+. +-..+|.  .-|.+ =.+|.|..|+..||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i~~ga-I~r~~d~--s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAIGPGA-ITRTPDN--SRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCcccccc----ccccCCCCCchhhhccCCCc-eeecccc--CCCCc-ceEEEEeecCCceeeeec
Confidence            45899999999998764    3465555544445444 111 1111111  11222 358999999999996554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3ga3_A	133	Interferon-induced helicase C domain-containing pr	94.74
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	94.46
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	93.53
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.2
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.06
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	92.92
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	92.7
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.15
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.04
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	91.83
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	90.92
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	90.69
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	88.68
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	88.44
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	86.28

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=94.74  E-value=0.031  Score=39.92  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=54.0

Q ss_pred             eEEeecCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeecccc
Q 033956           10 LYSCHNCRNHVALHDDIISK--AFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAFEAS   87 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~s   87 (107)
                      .+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..-+...+. ..+...-..|.|. |+..+|-....---+=
T Consensus        12 kllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~L   87 (133)
T 3ga3_A           12 TFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLDL   87 (133)
T ss_dssp             EEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEEE
T ss_pred             EEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEeccccC
Confidence            58999999999999997543  1111112221  234434422222233 4667888899999 9999997765433333


Q ss_pred             cccccceEEEEec
Q 033956           88 QKYKEGKFIFEKS  100 (107)
Q Consensus        88 qkYKEGkfILE~~  100 (107)
                      =-.|.-.|+||-.
T Consensus        88 P~LkIksFVve~~  100 (133)
T 3ga3_A           88 PCLKIRNFVVVFK  100 (133)
T ss_dssp             EEECGGGEEEEET
T ss_pred             ceEEEEEEEEEcC
Confidence            4456677777753

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=94.46  E-value=0.019  Score=41.59  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             CCCeEEeecCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeec
Q 033956            7 GPRLYSCHNCRNHVALHDDIISK--AFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERAF   84 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~   84 (107)
                      ..-.+.|++|.+.+++.+||-.-  +-+=.-+++  |...+.+..+|..-.....+...-..|.|..|+..+|-....--
T Consensus        10 s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~   87 (145)
T 3eqt_A           10 EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKS   87 (145)
T ss_dssp             GGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETT
T ss_pred             hheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecc
Confidence            34469999999999999997543  111001111  12333332232221111345567788999999999997765443


Q ss_pred             ccccccccceEEEEecc
Q 033956           85 EASQKYKEGKFIFEKSK  101 (107)
Q Consensus        85 e~sqkYKEGkfILE~~~  101 (107)
                      -+==-.|.-.|++|...
T Consensus        88 ~~LP~LkIksFVve~~~  104 (145)
T 3eqt_A           88 VKLPVLKVRSMLLETPQ  104 (145)
T ss_dssp             EEEEEECGGGEEEEETT
T ss_pred             ccCceEeEEEEEEEcCC
Confidence            33445677778887643

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=93.53  E-value=0.035  Score=38.93  Aligned_cols=89  Identities=18%  Similarity=0.328  Sum_probs=55.3

Q ss_pred             CCCeEEeecCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeEEEe
Q 033956            7 GPRLYSCHNCRNHVALHDDIISK--AFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCS--DCREVLGWKYER   82 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   82 (107)
                      |+..+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+.+.-..|.|.  .|+..+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            56779999999999999997432  1111111111  22333322222 222 2456788889999  999999977654


Q ss_pred             ecccccccccceEEEEe
Q 033956           83 AFEASQKYKEGKFIFEK   99 (107)
Q Consensus        83 A~e~sqkYKEGkfILE~   99 (107)
                      ---+==-.|.-.|+||.
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            43334456777788876

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.20  E-value=0.11  Score=37.41  Aligned_cols=81  Identities=19%  Similarity=0.386  Sum_probs=53.4

Q ss_pred             CCCeEEeecCcCCCCCCCCe----------eeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCC
Q 033956            7 GPRLYSCHNCRNHVALHDDI----------ISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCS--DCRE   74 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~l----------iSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~   74 (107)
                      +.-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+.+.  ..-+...-..|+|.  .|+.
T Consensus        24 ~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~k--~f~d~~~~g~I~C~~~~Cg~   91 (145)
T 2qfd_A           24 ENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKPK--QFSSFEKRAKIFCARQNCSH   91 (145)
T ss_dssp             CCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSCC--CCSSEEEEEEEEECSTTTCC
T ss_pred             cceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcccc--hhhceeCCceEEeCCcccCc
Confidence            34459999999999999998          334443          222233111111  14455677899999  9999


Q ss_pred             ceeeEEEeecccccccccceEEEEe
Q 033956           75 VLGWKYERAFEASQKYKEGKFIFEK   99 (107)
Q Consensus        75 ~lGWkY~~A~e~sqkYKEGkfILE~   99 (107)
                      .+|-....---+-=-.|.-.|+||.
T Consensus        92 ~WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           92 DWGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEEETTEEEEEECGGGEEEEC
T ss_pred             chhceEEEccccCceEEEEEEEEEe
Confidence            9997665433334456777888885

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.06  E-value=0.038  Score=39.99  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=++++    -|....|=--.+..+.+ .+...+|++  -|+.. ..|.|..|+..||=-...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence            347999999999977764    35555665444554444 333344432  24432 479999999999966543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=92.92  E-value=0.06  Score=38.10  Aligned_cols=64  Identities=13%  Similarity=0.292  Sum_probs=38.3

Q ss_pred             CeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEE
Q 033956            9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKY   80 (107)
Q Consensus         9 ~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      -+|.|+.|.++|=++++=    |....|=.-.++.+-.-.+-..+++   .|+. ...|.|+.|+..||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            489999999999888753    5545554333333321111112222   1221 35799999999999544

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=92.70  E-value=0.064  Score=38.86  Aligned_cols=68  Identities=12%  Similarity=0.149  Sum_probs=43.0

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|+++  |+. =..|.|..|+..||=-...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEET--TEE-EEEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCCC--CcE-EEEEEeCCCCCccCceeCC
Confidence            348999999999877653    4665566555455443222222334332  443 3588999999999966643

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.15  E-value=0.08  Score=37.61  Aligned_cols=89  Identities=20%  Similarity=0.331  Sum_probs=51.9

Q ss_pred             CCCeEEeecCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeEEEe
Q 033956            7 GPRLYSCHNCRNHVALHDDIISK--AFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCS--DCREVLGWKYER   82 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   82 (107)
                      |+..+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+.+.-..|.|.  .|+..+|-....
T Consensus         4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   79 (131)
T 4a2v_A            4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKY   79 (131)
T ss_dssp             -CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEE
T ss_pred             cceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEee
Confidence            56789999999999999997432  1110111111  12222322222 122 3456778889999  999998876543


Q ss_pred             eccc-ccccccceEEEEe
Q 033956           83 AFEA-SQKYKEGKFIFEK   99 (107)
Q Consensus        83 A~e~-sqkYKEGkfILE~   99 (107)
                      ---+ ==-.|.-.|++|.
T Consensus        80 k~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           80 LTFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TTEEEEEEECGGGEEECC
T ss_pred             cCcccCceEeEEEEEEEe
Confidence            2222 2246677777775

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.04  E-value=0.051  Score=40.06  Aligned_cols=66  Identities=21%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             CeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         9 ~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      -+|.|+.|.++|=++++    -|....|=.-.++.+.+-.+...+|+.  -|+. -..|.|..|+..||=-..
T Consensus        72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEES
T ss_pred             eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccC
Confidence            48999999999977764    365556655555554332222333332  2443 457999999999996553

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=90.92  E-value=0.061  Score=37.02  Aligned_cols=65  Identities=14%  Similarity=0.355  Sum_probs=39.6

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKY   80 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      +-+|.|+.|.++|=++++    -|....|=.-.++.+..-.+...+|.   .++ .-..|.|..|+..||=-.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            347999999999877664    35555565444544421111111221   121 236899999999999665

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.69  E-value=0.056  Score=39.38  Aligned_cols=68  Identities=19%  Similarity=0.496  Sum_probs=43.3

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      .-+|.|+.|.++|=++++    -|....|=--.++.+..-.+...+|+.  -|+.. ..|.|..|+..||--...
T Consensus        59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           59 DGIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMVR-CEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             CSEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSCE-EEEEETTEEEEEEEEEEC
T ss_pred             CEEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCceE-EEEEeCCCCCcCCcccCC
Confidence            348999999999877763    466566654445554322222333332  23332 479999999999966644

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=88.68  E-value=0.058  Score=39.44  Aligned_cols=66  Identities=21%  Similarity=0.425  Sum_probs=39.1

Q ss_pred             CeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         9 ~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      -+|.|+.|.++|=++++    -|....|=--.++.+..-.+...+|..  -|+. =..|.|..|+..||=-..
T Consensus        49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            48999999999977664    355445543334433211111122221  1333 257999999999996554

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=88.44  E-value=0.17  Score=40.56  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYER   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=++++    -|....|=--.++.+-.-.+...+|+++  |+. =..|.|..|+..||=-...
T Consensus       207 ~G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~D  274 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFTD  274 (313)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEESC
T ss_pred             CeEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccCC
Confidence            348999999999877653    4665566544444442212222233321  443 3589999999999966543

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=86.28  E-value=0.21  Score=36.07  Aligned_cols=68  Identities=15%  Similarity=0.314  Sum_probs=39.9

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeeccc-------ccccCCccceeeceecEEEeeeecccCCCceeeEE
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAM-------NVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKY   80 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~-------Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      .-+|.|+.|.++|=++++    -|....|=.-.++.+.       .-.+...+|+  .-|+. =..|.|..|+..||=-.
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~~~~~~~~V~~~~D~--s~gm~-RtEV~C~~Cg~HLGHVF  107 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPSFSEAYGSKGSDESHTGILRRLDT--SLGCP-RMEVVCKQCEAHLGHVF  107 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSBBSSCCSCCTTHHHHTCEEEEEEC--TTSSC-EEEEEESSSCCCCEEEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChhhchhhccccccCCCCceEEeecc--cCCce-EEEEEECCCCCcCCccc
Confidence            347999999999877754    3554455433333331       0011112222  12333 34799999999999666


Q ss_pred             Ee
Q 033956           81 ER   82 (107)
Q Consensus        81 ~~   82 (107)
                      ..
T Consensus       108 ~D  109 (143)
T 2l1u_A          108 PD  109 (143)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	91.22
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	89.57

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=91.22  E-value=0.041  Score=37.94  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             CCeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEee
Q 033956            8 PRLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYERA   83 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A   83 (107)
                      .-+|.|+.|.++|=++++    -|.-..|=.-.++.+-+-.+....+..  -|+-. ..|.|..|+..||=-....
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             cCceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCC
Confidence            347999999999987654    355555544334444333322222211  13322 3899999999999666443

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.57  E-value=0.062  Score=36.99  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             CeEEeecCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033956            9 RLYSCHNCRNHVALHDDIISKAFQGRNGRAFLFSHAMNVVVGPKEDRHLLTGLHTVADIYCSDCREVLGWKYE   81 (107)
Q Consensus         9 ~~y~C~~C~thLa~~~~liSk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      -+|.|+.|.++|=++++    -|.-..|=.-.++.+-+-+. ..+|..  -|+ .=..|.|..|+..||=-..
T Consensus        40 G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             ceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            47999999999987765    25555554444444433221 122211  111 1357899999999996554