Citrus Sinensis ID: 033974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Secondary Structure (PSIPRED)
ccHHHHHHccccccccHHcccHHHHHHHHHccccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccccccHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEHHHHHHHcc
Coil and Loop (DISEMBL)
mmwdewvdcnnndeqtqqdshvnfdflsllakpkdyyKILEVDYDATEEEIRSNYIRLALkwhpdkqkdrdCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Flexible Loop (DISEMBL)
MMWDEWVDCNNNdeqtqqdshvNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRlalkwhpdkqkdrDCATSRFQEINEAyqekngslilmVKIKFNQVQRCLR
Low Complexity Region (SEG)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Disordered region (IsUnstruct)
*****WV*************HVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPD******CATSRFQEINEAYQEKNGSLILMVKIKFNQVQ****
Disordered Region (DISOPRED)
*MWDE********************FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK****ATSRFQEINEAYQEKNGSLILMVKIKFNQVQRC**
Disordered Region (DISEMBL)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Disordered Region (DISPRO)
******************DSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQRCLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q72GN6	350	Chaperone protein DnaJ OS	yes	no	0.476	0.145	0.568	3e-10
Q5SLW9	350	Chaperone protein DnaJ 1	yes	no	0.476	0.145	0.568	3e-10
B9MJZ0	388	Chaperone protein DnaJ OS	yes	no	0.523	0.144	0.517	5e-10
Q75WD2	380	Chaperone protein DnaJ OS	yes	no	0.514	0.144	0.472	6e-10
A4XKA5	387	Chaperone protein DnaJ OS	yes	no	0.523	0.144	0.5	1e-09
Q3AF07	381	Chaperone protein DnaJ OS	yes	no	0.485	0.136	0.538	1e-09
A8G9K9	375	Chaperone protein DnaJ OS	yes	no	0.476	0.136	0.538	1e-09
Q67S53	386	Chaperone protein DnaJ OS	yes	no	0.514	0.142	0.553	1e-09
B9KAB9	370	Chaperone protein DnaJ OS	yes	no	0.485	0.140	0.547	1e-09
A5IIT4	369	Chaperone protein DnaJ OS	yes	no	0.485	0.140	0.547	1e-09

>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A++EEI+  Y RLALK+HPD+      A  RF+EINEAY
Sbjct: 2  KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAY 52

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A++EEI+  Y RLALK+HPD+      A  RF+EINEAY
Sbjct: 2  KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAY 52

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A+ KDYY+IL V  +ATEEEI+  Y RLA ++HPD       A  +F+EINEAY+
Sbjct: 1  MAQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYE 56

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

>sp|Q75WD2|DNAJ_ACEP3 Chaperone protein DnaJ OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=dnaJ PE=3 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A   DYY ILEV   AT +E++ +Y +LA+K+HPD+    D A ++F+EIN+AY
Sbjct: 1  MATQLDYYAILEVSRTATADELKKSYRKLAMKYHPDRNPGDDAAEAKFKEINQAY 55

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) (taxid: 634452)

>sp|A4XKA5|DNAJ_CALS8 Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A+ KDYY+IL V  +AT+EEI+  Y RLA ++HPD       A  +F+EINEAY+
Sbjct: 1  MAQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYE 56

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V  +AT EEI+  Y +LA K+HPD  KD   A  +F+EINEAY+
Sbjct: 3  RDYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYE 54

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

>sp|A8G9K9|DNAJ_SERP5 Chaperone protein DnaJ OS=Serratia proteamaculans (strain 568) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+IL V   A E EI+  Y RLA+K+HPD+ +++D A +RF+EI EAY+
Sbjct: 4  KDYYEILGVSKTAEEREIKKAYKRLAMKFHPDRNQEQD-AEARFKEIKEAYE 54

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|Q67S53|DNAJ_SYMTH Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          LAK +DYY+IL V  +ATE EI+  +  LA K+HPD  KD   A  +F+EINEAYQ
Sbjct: 4  LAK-RDYYEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQ 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Symbiobacterium thermophilum (taxid: 2734)

>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQ 85
          KDYY+IL V  +AT+EEIR  Y RL  +WHPD+  ++R  A  RF+EI EAY+
Sbjct: 6  KDYYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYE 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQ 85
          KDYY+IL V  DAT+EEI+  Y RL  +WHPD+  ++R  A  RF+EI EAY+
Sbjct: 6  KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYE 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
255545914	119	conserved hypothetical protein [Ricinus	0.813	0.731	0.711	3e-27
224067027	141	predicted protein [Populus trichocarpa]	0.785	0.595	0.698	6e-27
449436962	137	PREDICTED: chaperone protein DnaJ-like [	0.766	0.598	0.709	1e-26
356552953	138	PREDICTED: protein tumorous imaginal dis	0.785	0.608	0.659	6e-26
217071656	137	unknown [Medicago truncatula]	0.682	0.532	0.767	2e-25
359492931	138	PREDICTED: chaperone protein DnaJ 1-like	0.672	0.521	0.777	2e-25
388522767	146	unknown [Medicago truncatula]	0.682	0.5	0.767	3e-25
357489941	146	Chaperone protein dnaJ [Medicago truncat	0.682	0.5	0.767	4e-25
255638069	135	unknown [Glycine max]	0.775	0.614	0.650	3e-24
326507540	131	predicted protein [Hordeum vulgare subsp	0.775	0.633	0.670	5e-24

>gi|255545914|ref|XP_002514017.1| conserved hypothetical protein [Ricinus communis] gi|223547103|gb|EEF48600.1| conserved hypothetical protein [Ricinus communis]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 3/90 (3%)

Query: 1  MMWDEWVDCNNNDEQ---TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIR 57
          MMWD++ +   N  Q   +  DSH+NFDFLSL++KPKDYYKILEVDYDA+++ IRSNYIR
Sbjct: 2  MMWDDYQNQTQNQNQDQDSNSDSHLNFDFLSLVSKPKDYYKILEVDYDASDDAIRSNYIR 61

Query: 58 LALKWHPDKQKDRDCATSRFQEINEAYQEK 87
          LALKWHPDKQK  D ATSRFQEINEAYQ K
Sbjct: 62 LALKWHPDKQKSEDSATSRFQEINEAYQAK 91

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067027|ref|XP_002302333.1| predicted protein [Populus trichocarpa] gi|222844059|gb|EEE81606.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 70/93 (75%), Gaps = 9/93 (9%)

Query: 2  MWDEWVDCNNNDEQ---------TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIR 52
          MWDEW D     +Q           QDS  NFD LSLL++PKDYYKILEVDYDAT++ IR
Sbjct: 1  MWDEWDDSQTQQQQQQQQQQQQQPDQDSCFNFDLLSLLSRPKDYYKILEVDYDATDDAIR 60

Query: 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SNYIRLALKWHPDKQKD D ATSRFQEINEAYQ
Sbjct: 61 SNYIRLALKWHPDKQKDEDSATSRFQEINEAYQ 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436962|ref|XP_004136261.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] gi|449497042|ref|XP_004160296.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 4/86 (4%)

Query: 3  WDEWVDCNNNDEQTQQD---SHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLA 59
          WDE     N+D Q   D   SH NFDF S + KPKDYYKILEV+YDAT+++IRSNYIRLA
Sbjct: 5  WDEHT-VTNSDRQPDSDNQYSHFNFDFFSAIVKPKDYYKILEVEYDATDDDIRSNYIRLA 63

Query: 60 LKWHPDKQKDRDCATSRFQEINEAYQ 85
          LKWHPDKQKD+D ATSRFQ+INEAYQ
Sbjct: 64 LKWHPDKQKDKDGATSRFQDINEAYQ 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552953|ref|XP_003544824.1| PREDICTED: protein tumorous imaginal discs, mitochondrial-like [Glycine max]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 70/91 (76%), Gaps = 7/91 (7%)

Query: 1  MMWDEWVDCNNN------DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
          MMW EW D  +       +  +  DSH+NFDF S L++PKDYYKILEVDYDAT++ IRSN
Sbjct: 1  MMW-EWEDYEDTITEPEPEPDSDSDSHLNFDFFSALSRPKDYYKILEVDYDATDDAIRSN 59

Query: 55 YIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          YIRLALKWHPDK KD + ATSRFQ+INEAYQ
Sbjct: 60 YIRLALKWHPDKHKDHNSATSRFQDINEAYQ 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071656|gb|ACJ84188.1| unknown [Medicago truncatula]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 17 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 76

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 77 ATSRFQDINEAYQ 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492931|ref|XP_002283904.2| PREDICTED: chaperone protein DnaJ 1-like [Vitis vinifera] gi|302142037|emb|CBI19240.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 63/72 (87%)

Query: 14 EQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCA 73
          E+   DS +NFDFLSLL+KPKDYY +LEVDYDATE+ IRSN+IRLALKWHPDKQKD D +
Sbjct: 18 EEPPPDSPLNFDFLSLLSKPKDYYGMLEVDYDATEDAIRSNFIRLALKWHPDKQKDPDNS 77

Query: 74 TSRFQEINEAYQ 85
          T RFQEINEAYQ
Sbjct: 78 TIRFQEINEAYQ 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522767|gb|AFK49445.1| unknown [Medicago truncatula]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 26 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 85

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 86 ATSRFQDINEAYQ 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489941|ref|XP_003615258.1| Chaperone protein dnaJ [Medicago truncatula] gi|355516593|gb|AES98216.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 26 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 85

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 86 ATSRFQDINEAYQ 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638069|gb|ACU19349.1| unknown [Glycine max]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 65/83 (78%)

Query: 3  WDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKW 62
          WD++ D     +  Q DSH+ FDF S L++PKDYYKILEVDYDAT++ IRSNYIRLALKW
Sbjct: 5  WDDYQDTIPKHDLPQPDSHLKFDFFSALSRPKDYYKILEVDYDATDDAIRSNYIRLALKW 64

Query: 63 HPDKQKDRDCATSRFQEINEAYQ 85
          HP K KD++  TS FQ+INEAYQ
Sbjct: 65 HPGKHKDQNFVTSGFQDINEAYQ 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507540|dbj|BAK03163.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326519580|dbj|BAK00163.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 2/85 (2%)

Query: 1  MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLAL 60
          M+W EW D  +   +T  +  V+FDF S  AKPKDYYKILEVDYDA+EE IRS+YIRLAL
Sbjct: 1  MLW-EW-DDGDEAARTGDEVPVDFDFFSFFAKPKDYYKILEVDYDASEETIRSSYIRLAL 58

Query: 61 KWHPDKQKDRDCATSRFQEINEAYQ 85
          KWHPDK++D + ATSRFQ+INEAYQ
Sbjct: 59 KWHPDKKQDEEKATSRFQDINEAYQ 83

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:505006286	119	AT2G33735 [Arabidopsis thalian	0.607	0.546	0.656	1.4e-18
TAIR|locus:2174170	128	AT5G16650 [Arabidopsis thalian	0.485	0.406	0.788	7.5e-18
FB|FBgn0034091	346	mrj "mrj" [Drosophila melanoga	0.476	0.147	0.557	8.7e-11
TAIR|locus:2054809	337	AT2G20560 [Arabidopsis thalian	0.476	0.151	0.442	2.8e-10
TAIR|locus:2121368	348	AT4G28480 [Arabidopsis thalian	0.467	0.143	0.450	3.2e-10
ASPGD|ASPL0000012039	634	AN4192 [Emericella nidulans (t	0.719	0.121	0.384	5.8e-10
UNIPROTKB|G4N1N5	416	MGG_07502 "Chaperone dnaJ 2" [	0.579	0.149	0.451	9.9e-10
SGD|S000004827	377	SCJ1 "One of several homologs	0.542	0.153	0.516	1.3e-09
FB|FBgn0052640	132	CG32640 [Drosophila melanogast	0.467	0.378	0.549	1.4e-09
FB|FBgn0052641	132	CG32641 [Drosophila melanogast	0.467	0.378	0.549	1.4e-09

TAIR|locus:505006286 AT2G33735 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/67 (65%), Positives = 54/67 (80%)

Query:    19 DSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQ 78
             DSH  FDF       KD+YK+LE++ DA+++EIRS++IRLALKWHPDK K+ D ATSRFQ
Sbjct:     8 DSH-GFDFFDF-EDYKDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQ 65

Query:    79 EINEAYQ 85
             EINEAYQ
Sbjct:    66 EINEAYQ 72

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2174170 AT5G16650 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/52 (78%), Positives = 43/52 (82%)

Query:    33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             PKDYYKILEVDYDATEE IR NY +LALKWHPDK K    AT +FQEINEAY
Sbjct:     9 PKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAY 60

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

FB|FBgn0034091 mrj "mrj" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 8.7e-11, P = 8.7e-11
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query:    35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQ 85
             DYYKIL+V   AT+ E++  Y +LALKWHPDK  D  D A  RF+E++EAY+
Sbjct:     3 DYYKILDVSRSATDSEVKKAYRKLALKWHPDKNPDNLDEANKRFRELSEAYE 54

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 23/52 (44%), Positives = 40/52 (76%)

Query:    35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQ 85
             DYYK+L+VD  A++++++  Y +LA+KWHPDK   ++  A + F++I+EAY+
Sbjct:     4 DYYKVLQVDRSASDDDLKKAYRKLAMKWHPDKNPNNKKDAEAMFKQISEAYE 55

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS;RCA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
 Identities = 23/51 (45%), Positives = 39/51 (76%)

Query:    35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAY 84
             DYYK+L+VD  A +++++  Y +LA+KWHPDK   ++  A ++F++I+EAY
Sbjct:     4 DYYKVLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAY 54

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ASPGD|ASPL0000012039 AN4192 [Emericella nidulans (taxid:162425)]

 Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:     8 DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ 67
             + N  ++  ++D     +F    A+ KDYYKIL V  DATE +++  Y +LA+K+HPDK 
Sbjct:   468 EANPGEKGIREDIR-RAEFELKKAQRKDYYKILGVSKDATETDLKKAYRKLAIKYHPDKN 526

Query:    68 KDRDCATSRFQEINEAYQ 85
             ++ +    +F+EI EAY+
Sbjct:   527 REGEAGDEKFKEIGEAYE 544

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|G4N1N5 MGG_07502 "Chaperone dnaJ 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 148 (57.2 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query:    24 FDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA 83
             F  + L+   +DYYKILE+D +A E+ I+  Y RL+ KWHPDK      A  +F E++EA
Sbjct:    11 FSLVQLVFAAEDYYKILEIDRNADEKAIKIAYRRLSKKWHPDKNPGDATAEGKFVEVSEA 70

Query:    84 YQ 85
             Y+
Sbjct:    71 YE 72

GO:0005575 "cellular_component" evidence=ND

SGD|S000004827 SCJ1 "One of several homologs of bacterial chaperone DnaJ" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query:    27 LSLLAKP----KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
             LSLL  P    +DYY ILE+D DATE+EI+S Y +L+ K+HPDK    + A  +F E+ E
Sbjct:    11 LSLLLLPLILAQDYYAILEIDKDATEKEIKSAYRQLSKKYHPDKNAGSEEAHQKFIEVGE 70

Query:    83 AY 84
             AY
Sbjct:    71 AY 72

GO:0034975 "protein folding in endoplasmic reticulum" evidence=IMP

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IMP

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISS;IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA

FB|FBgn0052640 CG32640 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query:    34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             +DYY IL VD++AT+EEIR  Y R+AL +HPDK K     T++F++INEA+
Sbjct:     3 EDYYMILGVDHNATDEEIRRAYKRMALIYHPDKNK-HPRTTAQFRKINEAF 52

GO:0009408 "response to heat" evidence=ISS

FB|FBgn0052641 CG32641 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query:    34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             +DYY IL VD++AT+EEIR  Y R+AL +HPDK K     T++F++INEA+
Sbjct:     3 EDYYMILGVDHNATDEEIRRAYKRMALIYHPDKNK-HPRTTAQFRKINEAF 52

GO:0009408 "response to heat" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.3317.1	hypothetical protein (126 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.504
	grail3.0261001401	hypothetical protein (124 aa)			•						0.504
	eugene3.02610008	hypothetical protein (132 aa)			•						0.504
	grail3.0261001101	hypothetical protein (648 aa)			•						0.503
	eugene3.02080009	hypothetical protein (656 aa)			•						0.503
	eugene3.00860035	hypothetical protein (705 aa)			•						0.503
	eugene3.00130164	hypothetical protein (660 aa)			•						0.503
	eugene3.00120231	hypothetical protein (668 aa)			•						0.503
	estExt_fgenesh4_pm.C_LG_I0291	SubName- Full=Putative uncharacterized protein; (666 aa)			•						0.503
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	9e-20
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-19
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-19
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	7e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-17
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-16
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-15
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-15
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-14
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-14
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-14
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	4e-14
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-14
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-13
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-13
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-13
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	7e-13
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	7e-13
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-12
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	2e-12
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	5e-12
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	9e-12
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	9e-12
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-11
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	7e-11
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-10
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-10
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	6e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-10
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-09
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-09
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	8e-09
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	8e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-05

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            +DYY+IL V  DA+EEEI+  Y +LA K+HPD+      A  +F+EINEAY+
Sbjct: 2  AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYE 55

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 75.3 bits (186), Expect = 9e-20
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY IL V  DA++EEI+  Y +LALK+HPDK  D   A  +F+EINEAY+
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYE 51

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 74.1 bits (183), Expect = 3e-19
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  DA++EEI+  Y +LALK+HPDK      A  +F+EINEAY+
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYE 51

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  DA+EEEI+  Y +LA K+HPD+ KD++ A  +F+EINEAY+
Sbjct: 1  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE-AEEKFKEINEAYE 50

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (189), Expect = 7e-18
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +DYY++L V  +A+E+EI+  Y +LA+K+HPD+      A  +F+EI EAY
Sbjct: 4  RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAY 54

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 68.8 bits (169), Expect = 4e-17
 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQ 85
           DYY+IL V  DA+ +EI+  Y +LALK+HPDK       A  +F+EINEAY+
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYE 53

Length = 60

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 71.8 bits (176), Expect = 4e-16
 Identities = 28/51 (54%), Positives = 35/51 (68%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYYK+L V  DATE EI+  Y +LA ++HPD  K    A  RF+EI+EAY
Sbjct: 9  KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAY 59

Length = 389

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A  KDYY+IL VD +ATEEEI+  Y RLA K+HPD       A  +F+EINEAY+
Sbjct: 1  MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYE 56

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 69.0 bits (169), Expect = 3e-15
 Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+IL V  +AT+EEI+  Y RLA K+HPD  K+ + A  +F+EINEAYQ
Sbjct: 3  KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE-AEEKFKEINEAYQ 53

Length = 382

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 67.6 bits (165), Expect = 1e-14
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A  +DYY+IL +  DA+ E+I+  Y +LA+K+HPDK K+ D A  +F+EI+EAY
Sbjct: 1  MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAY 54

Length = 377

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQ 85
          KDYY+IL V  +AT+EEI+  Y RL  +WHPD+  ++R  A  +F+EI EAY+
Sbjct: 4  KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYE 56

Length = 369

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 25/52 (48%), Positives = 39/52 (75%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY++L ++  A+++EI+  + +LA+K+HPDK K    A  +F+EINEAYQ
Sbjct: 4  KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQ 55

Length = 380

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A+++EI+  + +LA K+HPD  K    A  +F+EINEAY
Sbjct: 4  KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG-AEEKFKEINEAY 53

Length = 291

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 66.0 bits (161), Expect = 4e-14
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L V   A ++EI+  Y +LALK+HPDK  D   A   F+E+NEAY+
Sbjct: 3  RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYE 54

Length = 397

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            DYY+IL V  DA ++E++  Y RLA K+HPD  K+   A  RF+EIN AY+
Sbjct: 2  AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYE 53

Length = 374

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           +DYY++L V  DA+E+EI+  Y +LAL++HPD+  D   A  +F+E  EAY+
Sbjct: 3  QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYE 55

Length = 373

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 4e-13
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY IL V   A+ EEI+  Y +LA+K+HPDK      A  RF+E++EAY+
Sbjct: 2  DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYE 52

Length = 391

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 62.6 bits (152), Expect = 7e-13
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          DYY++L V   A+ +EI+S Y +LALK+HPD+ K++  A  +F +INEAY
Sbjct: 3  DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-AAEKFAQINEAY 51

Length = 371

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY +L V  +A++ EI+  Y +LA + HPD   D + A  +F+EI+ AY+
Sbjct: 3  RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYE 53

Length = 378

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 24/55 (43%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A+ +DYY++L VD +A ++EI+  Y +LA K+HPD  ++   A  +F+EI+EAY
Sbjct: 1  MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-AEEKFKEISEAY 54

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V  DA+EEEI+ +Y +LA+K+HPD+      A   F+E  EAY+
Sbjct: 4  RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYE 55

Length = 366

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           +YY  L V  DA+++EI+  Y +L+ K+HPD  K+   A  +++E+ EAY+
Sbjct: 4  TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYE 54

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 59.4 bits (144), Expect = 9e-12
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KD+YK L V  DA+ EEI+  Y +LA + HPD       A  RF+ ++EA+
Sbjct: 9  KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAH 59

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 59.2 bits (143), Expect = 9e-12
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          KDYYKIL VD +A++E+I+  +  LA KWHPD     +  A  +F+EI+EAY+
Sbjct: 3  KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYE 55

Length = 365

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L V   A+++EI+  Y +L+ K+HPD  K+   A  +F+EI+EAY+
Sbjct: 4  RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYE 54

Length = 376

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 58.5 bits (141), Expect = 2e-11
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY+
Sbjct: 4  RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYE 55

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.8 bits (137), Expect = 7e-11
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A+ +DYY++L V   AT +EI+  Y + A+++HPDK      A  +F+E  EAY
Sbjct: 1  MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAY 55

Length = 386

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA 83
          K KDYY++L V   A+E+EIR  Y +LA ++HPD  K  D A  +  EINEA
Sbjct: 2  KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEA 52

Length = 372

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +DYY++L VD +A+ +E++  Y +LA K+HPD  K  D A  +F+E+ EAY
Sbjct: 4  RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPD-AEDKFKEVKEAY 53

Length = 371

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL +   A+++EI+  Y ++A+K+HPDK K    A S F+E  EAY+
Sbjct: 3  RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYE 54

Length = 365

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 53.7 bits (128), Expect = 6e-10
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           DYY+IL V  +A+ EEI+  Y +LALK+HPD+   D   A  +F+EINEAY+
Sbjct: 6  LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYE 58

Length = 237

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 53.7 bits (129), Expect = 9e-10
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY I+ V      + I++ Y RLA K+HPD  K+ D A +RF+E+ EA++
Sbjct: 4  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWE 54

Length = 306

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L +D DA E+EI+  + +LA K+HPD+ K  D A S F EINEA  
Sbjct: 2  RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEAND 52

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +  Y++L +  D T  EI+  Y +LA+K HPDK  D +    +F+EI+ AY+
Sbjct: 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE----KFKEISRAYE 75

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 51.2 bits (122), Expect = 8e-09
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          YY+ILEV+  + +E I+ +Y +LALK+HPD+      A  +F+ INEAY
Sbjct: 5  YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAY 53

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 8e-08
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A++ +++  Y++LA ++HPD    +D A  +F+EIN AY 
Sbjct: 3  QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKD-AEKKFKEINAAYD 53

Length = 372

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 35  DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINEAYQ 85
           D Y+IL +D D +E +I+  Y  L++K+HPDK      + R     +++ I +AY 
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYG 154

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.91
PRK14288	369	chaperone protein DnaJ; Provisional	99.87
PRK14296	372	chaperone protein DnaJ; Provisional	99.85
PRK14286	372	chaperone protein DnaJ; Provisional	99.85
PRK14279	392	chaperone protein DnaJ; Provisional	99.84
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.84
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14277	386	chaperone protein DnaJ; Provisional	99.83
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.83
PRK14294	366	chaperone protein DnaJ; Provisional	99.83
PRK14285	365	chaperone protein DnaJ; Provisional	99.82
PRK14283	378	chaperone protein DnaJ; Provisional	99.82
PRK14282	369	chaperone protein DnaJ; Provisional	99.82
PRK14287	371	chaperone protein DnaJ; Provisional	99.82
PRK14276	380	chaperone protein DnaJ; Provisional	99.82
PRK14301	373	chaperone protein DnaJ; Provisional	99.82
PRK14298	377	chaperone protein DnaJ; Provisional	99.82
PRK14297	380	chaperone protein DnaJ; Provisional	99.82
PRK14299	291	chaperone protein DnaJ; Provisional	99.81
PRK14295	389	chaperone protein DnaJ; Provisional	99.81
PRK10767	371	chaperone protein DnaJ; Provisional	99.81
PRK14291	382	chaperone protein DnaJ; Provisional	99.81
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.81
PRK14280	376	chaperone protein DnaJ; Provisional	99.81
PRK14284	391	chaperone protein DnaJ; Provisional	99.81
PRK14278	378	chaperone protein DnaJ; Provisional	99.81
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
PRK14289	386	chaperone protein DnaJ; Provisional	99.8
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.79
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.79
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.79
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14290	365	chaperone protein DnaJ; Provisional	99.78
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.78
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14300	372	chaperone protein DnaJ; Provisional	99.77
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.77
PRK14293	374	chaperone protein DnaJ; Provisional	99.77
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PRK14292	371	chaperone protein DnaJ; Provisional	99.76
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.74
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.72
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.7
PHA03102	153	Small T antigen; Reviewed	99.68
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.66
PRK05014	171	hscB co-chaperone HscB; Provisional	99.65
PRK01356	166	hscB co-chaperone HscB; Provisional	99.65
PRK00294	173	hscB co-chaperone HscB; Provisional	99.62
PRK03578	176	hscB co-chaperone HscB; Provisional	99.61
PTZ00100	116	DnaJ chaperone protein; Provisional	99.58
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.55
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.53
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
PRK01773	173	hscB co-chaperone HscB; Provisional	99.43
PHA02624	647	large T antigen; Provisional	99.42
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.4
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.33
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.22
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.92
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.9
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.85
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.75
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.39
KOG0431	453	consensus Auxilin-like protein and related protein	97.71
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.66
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.27
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.98
PF13446	62	RPT: A repeated domain in UCH-protein	92.59
KOG0724	335	consensus Zuotin and related molecular chaperones	91.43
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	91.15
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	87.98
KOG3442	132	consensus Uncharacterized conserved protein [Funct	84.5
COG5552	88	Uncharacterized conserved protein [Function unknow	80.95

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.2e-26  Score=172.46  Aligned_cols=70  Identities=40%  Similarity=0.623  Sum_probs=65.9

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...|||+||||+++|+.+|||+|||+||++||||++++.++|+++|++|++||++||||..|..|++|+.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~   71 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGH   71 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCc
Confidence            4679999999999999999999999999999999999777799999999999999999999999998863

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2e-24  Score=162.03  Aligned_cols=76  Identities=32%  Similarity=0.500  Sum_probs=71.0

Q ss_pred             hhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .+...+...+|||+||||+.+|+..|||+|||+||+++|||||++.+.|.+.|++|+.||++||||..|..|+.+|
T Consensus         7 ~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G   82 (336)
T KOG0713|consen    7 SGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG   82 (336)
T ss_pred             hhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            4455666789999999999999999999999999999999999999999999999999999999999999888887

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.5e-22  Score=154.13  Aligned_cols=69  Identities=33%  Similarity=0.565  Sum_probs=64.2

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.+|||+|||+||++||||++++...|.++|++|++||++|+||..|..|+.|+.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            369999999999999999999999999999999998655689999999999999999999999998764

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.4e-21  Score=150.13  Aligned_cols=68  Identities=37%  Similarity=0.471  Sum_probs=63.4

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+||++||||+++++ .|.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            46999999999999999999999999999999999764 489999999999999999999999998774

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=3.1e-21  Score=148.23  Aligned_cols=69  Identities=36%  Similarity=0.590  Sum_probs=64.5

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...|.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            469999999999999999999999999999999998766689999999999999999999999998764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.3e-21  Score=148.91  Aligned_cols=69  Identities=32%  Similarity=0.419  Sum_probs=64.9

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++.+.|.+.|++|++||++|+||..|..|+.|+.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            479999999999999999999999999999999998766689999999999999999999999999864

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=5.5e-21  Score=144.46  Aligned_cols=65  Identities=40%  Similarity=0.622  Sum_probs=62.8

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ...+|+||||+++|+.+|||+|||+|+++|||||+++   +.++|++|.+||++||||..|.+|+.|+
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g   67 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYG   67 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            5689999999999999999999999999999999998   7899999999999999999999999998

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1e-20  Score=138.61  Aligned_cols=70  Identities=37%  Similarity=0.557  Sum_probs=66.4

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQV  102 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~  102 (107)
                      ..++|+||||+++++.++||++||+|++++|||++++.+++.++|++||.||++|+||..|+.|++++.+
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~   99 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL   99 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence            6689999999999999999999999999999999999777999999999999999999999999999744

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.5e-20  Score=145.03  Aligned_cols=69  Identities=45%  Similarity=0.631  Sum_probs=64.6

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...++++|++|++||++|+||..|..|+.|+.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            469999999999999999999999999999999998766689999999999999999999999998774

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.83  E-value=3.6e-20  Score=109.49  Aligned_cols=62  Identities=35%  Similarity=0.527  Sum_probs=57.3

Q ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhhchHHHHHH
Q 033974           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQEKNGSLILMVK   96 (107)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~~   96 (107)
                      |||+||||+++++.++|+++|+++++.+|||+++... .+.+.|..|++||++|+||..|..|
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~Y   63 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRY   63 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhc
Confidence            6899999999999999999999999999999987764 6889999999999999999877755

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=2.1e-20  Score=143.28  Aligned_cols=69  Identities=36%  Similarity=0.591  Sum_probs=64.6

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++.+.+.+.|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~   71 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH   71 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence            579999999999999999999999999999999998766689999999999999999999999998763

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=144.09  Aligned_cols=68  Identities=35%  Similarity=0.566  Sum_probs=64.0

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.++||+|||+|+++||||++++.+.+.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            69999999999999999999999999999999998766689999999999999999999999988764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.9e-20  Score=144.09  Aligned_cols=69  Identities=35%  Similarity=0.594  Sum_probs=64.0

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...|||+||||+++|+.+|||+|||+|+++||||++++ +.|.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            35799999999999999999999999999999999986 4589999999999999999999999998774

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.9e-20  Score=143.67  Aligned_cols=69  Identities=39%  Similarity=0.666  Sum_probs=63.5

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.. ..|.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~   72 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY   72 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence            46999999999999999999999999999999998753 4588999999999999999999999888763

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.1e-20  Score=143.63  Aligned_cols=68  Identities=34%  Similarity=0.584  Sum_probs=63.0

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++++ .++++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~   70 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDPQKKAHYDQFGH   70 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence            46999999999999999999999999999999998754 488999999999999999999999998763

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.8e-20  Score=143.24  Aligned_cols=68  Identities=29%  Similarity=0.541  Sum_probs=63.2

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            46999999999999999999999999999999999864 488999999999999999999999998763

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=3e-20  Score=142.84  Aligned_cols=69  Identities=36%  Similarity=0.622  Sum_probs=64.4

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...++++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~   71 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH   71 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence            469999999999999999999999999999999998766689999999999999999999999998763

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.5e-20  Score=143.44  Aligned_cols=69  Identities=38%  Similarity=0.628  Sum_probs=63.4

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            356999999999999999999999999999999998764 488999999999999999999999998763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.9e-20  Score=143.16  Aligned_cols=69  Identities=38%  Similarity=0.640  Sum_probs=64.3

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++.+.|+++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~   71 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT   71 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence            469999999999999999999999999999999998766689999999999999999999999988763

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.6e-20  Score=137.74  Aligned_cols=68  Identities=37%  Similarity=0.559  Sum_probs=62.7

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|++|++||++|+||..|..|+.++.
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            46999999999999999999999999999999999754 488999999999999999999998888764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.2e-20  Score=142.71  Aligned_cols=66  Identities=42%  Similarity=0.577  Sum_probs=62.0

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+||..|..|+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            469999999999999999999999999999999998766689999999999999999999988886

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.6e-20  Score=141.56  Aligned_cols=69  Identities=33%  Similarity=0.620  Sum_probs=64.1

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...|.+.|++|++||++|+||..|..|+.++.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~   71 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH   71 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence            469999999999999999999999999999999998666688999999999999999999999988763

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.4e-20  Score=141.73  Aligned_cols=68  Identities=46%  Similarity=0.643  Sum_probs=63.0

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++++ .+.++|++|++||++|+||..|..|+.|+.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            46999999999999999999999999999999999874 488999999999999999999999988764

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.81  E-value=4.2e-20  Score=143.92  Aligned_cols=65  Identities=31%  Similarity=0.547  Sum_probs=60.6

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+||++||||++++    .++|++|++||++|+||..|..|+.++.
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            5799999999999999999999999999999999853    4899999999999999999999998764

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.6e-20  Score=141.43  Aligned_cols=68  Identities=34%  Similarity=0.604  Sum_probs=63.1

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.++||+|||+|+++||||+++++. +.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   70 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYDQFGH   70 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence            469999999999999999999999999999999987654 89999999999999999999999998763

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=6.9e-20  Score=141.53  Aligned_cols=67  Identities=37%  Similarity=0.583  Sum_probs=63.1

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+||..|..|+.|+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G   67 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG   67 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            3899999999999999999999999999999999877679999999999999999999999888876

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.4e-20  Score=142.10  Aligned_cols=67  Identities=31%  Similarity=0.462  Sum_probs=62.4

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.++||+|||+|+++||||+++++ .|.++|++|++||++|+||..|..|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDE-EAQEKFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcH-HHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence            6999999999999999999999999999999999854 488999999999999999999999988763

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=6.7e-20  Score=141.85  Aligned_cols=68  Identities=38%  Similarity=0.623  Sum_probs=63.7

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.++||+|||+|+++||||++++...|.+.|++|++||++|+||..|..|+.|+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            69999999999999999999999999999999998766688999999999999999999999988763

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.8e-19  Score=138.88  Aligned_cols=69  Identities=32%  Similarity=0.503  Sum_probs=64.6

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++.+.+.++|++|++||++|+||..|..|+.|+.
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            579999999999999999999999999999999998776799999999999999999999998888764

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.79  E-value=3.2e-19  Score=103.88  Aligned_cols=58  Identities=47%  Similarity=0.767  Sum_probs=53.8

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhhchH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQEKNGSL   91 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~a~~~f~~i~~Ay~~L~d~~   91 (107)
                      .+||+||||+++++.++||++|+++++.+|||++++ ...+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999986 4568899999999999999983

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.79  E-value=3.6e-19  Score=101.91  Aligned_cols=55  Identities=53%  Similarity=0.838  Sum_probs=51.8

Q ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhc
Q 033974           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNG   89 (107)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d   89 (107)
                      |||+||||+++++.++|+++|+++++.+|||++++...+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999998755589999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.3e-19  Score=138.34  Aligned_cols=67  Identities=40%  Similarity=0.612  Sum_probs=61.3

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ....||+||||...++..+||++||+||++|||||+++. +++.+.|+.|+.||+|||||..|.-|+.
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~   73 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS   73 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence            456899999999999999999999999999999997766 6799999999999999999998877654

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=5.1e-19  Score=132.22  Aligned_cols=70  Identities=34%  Similarity=0.544  Sum_probs=66.3

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQV  102 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~  102 (107)
                      ..|||.||||+..++..+|+++||..++++|||||++.+.|.+.|+.|.+||++|+|+..|..|++++.-
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~   73 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS   73 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            6799999999999999999999999999999999999988999999999999999999999988887643

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.1e-19  Score=136.80  Aligned_cols=68  Identities=38%  Similarity=0.589  Sum_probs=62.9

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.+|||+|||+|++++|||++++.. .|.+.|++|++||++|+||..|..|+.|+.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~   71 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT   71 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence            69999999999999999999999999999999987653 689999999999999999999998888763

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.78  E-value=4.1e-19  Score=135.49  Aligned_cols=66  Identities=45%  Similarity=0.688  Sum_probs=61.1

Q ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      |||+||||+++|+.++||+|||+|+++||||+++. ..+.+.|++|++||++|+|+..|..|+.|+.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~   66 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRAQYDQFGH   66 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence            69999999999999999999999999999999974 3488999999999999999999999988764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=6.6e-19  Score=131.51  Aligned_cols=68  Identities=38%  Similarity=0.555  Sum_probs=63.1

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..|||+||||+++|+..|||+||++|++++|||.+.++ ++.+.|++|.+||++|+|+..|..|+.++-
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~  109 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGL  109 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence            33999999999999999999999999999999999998 599999999999999999999988877654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.8e-19  Score=135.64  Aligned_cols=67  Identities=31%  Similarity=0.594  Sum_probs=62.1

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.++||+|||+++++||||+++.. .+++.|++|++||++|+|+..|..|+.|+.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            6999999999999999999999999999999998754 488999999999999999999999988763

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.77  E-value=9.2e-19  Score=131.48  Aligned_cols=67  Identities=33%  Similarity=0.453  Sum_probs=62.2

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ..|||+||||+++++.++||+|||+|++++|||+++.. .+.+.|++|++||++|+||..|..|+.++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            36999999999999999999999999999999998764 48999999999999999999999888875

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=8.4e-19  Score=134.81  Aligned_cols=67  Identities=40%  Similarity=0.624  Sum_probs=62.5

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++|+.++||+|||+|++++|||++++. .+.++|+.|++||++|+||..|..|+.++.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            6999999999999999999999999999999998764 388999999999999999999999998764

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1e-18  Score=124.87  Aligned_cols=71  Identities=34%  Similarity=0.475  Sum_probs=65.4

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...-|+|+||||+++++..|||++||+|++++||||++..++.++.|..|.+||+.|+|+..|..+.+||.
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            46779999999999999999999999999999999998877788999999999999999999998877763

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8.9e-19  Score=134.45  Aligned_cols=66  Identities=39%  Similarity=0.654  Sum_probs=61.7

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .|||+||||+++|+.++||+|||+|++++|||++++. .+.++|++|++||++|+||..|..|+.++
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G   67 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDAEKRAHYDRFG   67 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence            4899999999999999999999999999999999854 48999999999999999999999998876

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.74  E-value=3.8e-18  Score=141.81  Aligned_cols=69  Identities=30%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...+||+||||+++|+..+||+|||+||+++|||+++++ .|..+|+.|++||++|+||..|..|+.+|.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~  639 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY  639 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence            468999999999999999999999999999999999876 488999999999999999999999998874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=4.6e-18  Score=132.31  Aligned_cols=70  Identities=31%  Similarity=0.530  Sum_probs=65.0

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...++|.+|+|+++|+.+||++|||++++.|||||+.++   ..|++.|+.|..||++|+||..|..|+.+|.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~   79 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE   79 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence            456999999999999999999999999999999999876   3589999999999999999999999999873

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7.4e-18  Score=121.68  Aligned_cols=72  Identities=39%  Similarity=0.578  Sum_probs=65.3

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQ  103 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~--~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~~  103 (107)
                      ...++|+||||..+|+..+|++||+++++.+|||+++  ...++.+.|+.|+.||.+|+|...|..|+.-|+.+
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            4559999999999999999999999999999999995  33569999999999999999999999998877654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=6.7e-17  Score=112.65  Aligned_cols=68  Identities=40%  Similarity=0.540  Sum_probs=63.0

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhhchHHHHHHHhH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQEKNGSLILMVKIKF   99 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~~~~~~   99 (107)
                      ...++|+||||+++++..+|+++||++++++|||+++.... +.+.|..|++||++|+|+..|..|+.+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            45799999999999999999999999999999999998774 899999999999999999988877765

>PHA03102 Small T antigen; Reviewed

Probab=99.68  E-value=5e-17  Score=111.54  Aligned_cols=64  Identities=25%  Similarity=0.447  Sum_probs=57.9

Q ss_pred             CChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..+|+||||+++|  +.++||+|||++++++|||++++    .+.|++|++||++|+|+..|..++.++.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~   70 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE   70 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence            4689999999999  99999999999999999999653    5799999999999999999988877654

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.66  E-value=2.5e-16  Score=128.68  Aligned_cols=66  Identities=39%  Similarity=0.578  Sum_probs=61.5

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .|||+||||+++|+.++||++||+|++++|||++++ ..+...|++|++||++|+||..|..|+.++
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG   67 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYG   67 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence            599999999999999999999999999999999887 447889999999999999999999888765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.65  E-value=5.2e-16  Score=108.30  Aligned_cols=64  Identities=25%  Similarity=0.387  Sum_probs=55.6

Q ss_pred             CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+..     .+.+.|..||+||++|+||..|..|.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl   71 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL   71 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence            389999999995  78899999999999999999976542     25678999999999999998888664

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.65  E-value=6.6e-16  Score=107.36  Aligned_cols=64  Identities=22%  Similarity=0.401  Sum_probs=55.1

Q ss_pred             CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+..   .+.+.+..||+||++|+||..|..|.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~Yl   70 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYM   70 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            489999999996  78999999999999999999987542   24456889999999999998888663

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.62  E-value=1.8e-15  Score=105.82  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=57.5

Q ss_pred             CCCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        32 ~~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      ...|||++|||++.  .+..+|+++||++++++|||+..+..     .+.+.|..||+||++|+||..|..|.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~Yl   74 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYL   74 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence            46799999999996  67899999999999999999986642     25678999999999999998887654

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.61  E-value=2.6e-15  Score=105.28  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             CCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        33 ~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      ..|||+||||++.  ++..+|+++|+++++++|||++.....     +.+.+..||+||++|+||..|..|.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl   76 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL   76 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence            4799999999985  689999999999999999999875432     3455689999999999998887654

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.58  E-value=3.4e-15  Score=98.12  Aligned_cols=57  Identities=30%  Similarity=0.324  Sum_probs=50.1

Q ss_pred             hhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhh
Q 033974           28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKN   88 (107)
Q Consensus        28 ~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~   88 (107)
                      +......++|+||||+++++.++|+++||++++++|||+.+    +.+.|++|++||++|.
T Consensus        59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~  115 (116)
T PTZ00100         59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL  115 (116)
T ss_pred             cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence            33445679999999999999999999999999999999954    3478899999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=6.4e-15  Score=114.60  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ......|+|.+|||+.+++.++||+.||++|...||||+.. +.|++.|+.|+.||++|+|++.|..|+.
T Consensus       230 re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~  298 (490)
T KOG0720|consen  230 RELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDL  298 (490)
T ss_pred             hhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            34458899999999999999999999999999999999995 5599999999999999999988887664

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.55  E-value=1.2e-14  Score=107.62  Aligned_cols=60  Identities=32%  Similarity=0.469  Sum_probs=53.3

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhhch
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQEKNGS   90 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~a~~~f~~i~~Ay~~L~d~   90 (107)
                      ....++|+||||++++|.++||++||+|++++|||+..+   +    +.+.++|++|++||++|+..
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            455799999999999999999999999999999999643   1    34889999999999999874

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=7.8e-15  Score=107.55  Aligned_cols=65  Identities=26%  Similarity=0.446  Sum_probs=59.7

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHH
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV   95 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~   95 (107)
                      .....|.|+||||++.++..+|.+|||+|++++|||++++++ +.+.|..|-.||++|.|+..|..
T Consensus        29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~   93 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQ   93 (329)
T ss_pred             cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHh
Confidence            356789999999999999999999999999999999999987 66999999999999999977763

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=8.5e-14  Score=106.40  Aligned_cols=67  Identities=34%  Similarity=0.538  Sum_probs=60.4

Q ss_pred             hhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhchHHHH
Q 033974           28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILM   94 (107)
Q Consensus        28 ~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~   94 (107)
                      ......+|||+||||.++|+..||.+|||+++.+||||-.++.+   .|+++|.-|-.|-++|+||..|-
T Consensus       388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRr  457 (504)
T KOG0624|consen  388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRR  457 (504)
T ss_pred             HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHh
Confidence            35567899999999999999999999999999999999988763   58999999999999999996554

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.43  E-value=5.6e-13  Score=93.25  Aligned_cols=64  Identities=19%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             CChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      .|||++|||++.  .+..++++.|+.+++.+|||+.....     .+.+....||+||.+|+||..|..|-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL   72 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI   72 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence            489999999995  89999999999999999999976652     35667889999999999998887553

>PHA02624 large T antigen; Provisional

Probab=99.42  E-value=3.2e-13  Score=108.99  Aligned_cols=60  Identities=22%  Similarity=0.418  Sum_probs=54.4

Q ss_pred             CCChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHH
Q 033974           33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVK   96 (107)
Q Consensus        33 ~~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~   96 (107)
                      ..++|+||||+++|  +.++||+|||++++++|||++++    .+.|++|+.||++|+|+..+..+
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            56899999999999  99999999999999999999653    58999999999999999876654

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.6e-13  Score=98.58  Aligned_cols=69  Identities=39%  Similarity=0.661  Sum_probs=61.4

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..++|.||||.+.++.++|++||+++++++|||+++.. ..+..+|.+|.+||++|+|+..|..++.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46899999999999999999999999999999997776 2355689999999999999999998888764

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.39  E-value=4.3e-13  Score=104.79  Aligned_cols=71  Identities=25%  Similarity=0.423  Sum_probs=63.4

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ....-|+|+||||+.+++..+||++||+|+.++||||.+.-     .+.++.+.+|++||..|+|...|..|-.+|
T Consensus        94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG  169 (610)
T COG5407          94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG  169 (610)
T ss_pred             HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence            34667999999999999999999999999999999997762     457899999999999999999998877764

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7e-13  Score=102.71  Aligned_cols=67  Identities=36%  Similarity=0.589  Sum_probs=61.2

Q ss_pred             hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHH
Q 033974           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMV   95 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~   95 (107)
                      ......+||.|||+...++..+|+++||++++.+|||++.+. .+++.+|++|-+||.+|+||..|..
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r  435 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR  435 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence            456788999999999999999999999999999999998887 6799999999999999999975553

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2.8e-12  Score=91.26  Aligned_cols=61  Identities=28%  Similarity=0.523  Sum_probs=57.3

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLIL   93 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r   93 (107)
                      +.|+|+||.|.+..+.++||+.||+|++..|||||++. +.|..+|..|.+||..|-|+..|
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r  113 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR  113 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            56999999999999999999999999999999999998 67999999999999999999744

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.22  E-value=3.9e-11  Score=82.75  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           46 ATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        46 a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      .+..+|+++|+++++++|||+....     ..+...|..||+||++|+||..|..|.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~yl   59 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYM   59 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence            5789999999999999999996543     236788999999999999998877554

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=3.8e-09  Score=89.71  Aligned_cols=59  Identities=31%  Similarity=0.486  Sum_probs=50.7

Q ss_pred             hhcCCCChhhhhcCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974           29 LLAKPKDYYKILEVDYD----ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS   90 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~   90 (107)
                      ...+..+.|+||.|+-+    .+.++||++|++|+.+|||||++.   ..+.|..+|+||+.|+..
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHHH
Confidence            34467789999999853    456999999999999999999987   679999999999999943

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.9e-09  Score=80.20  Aligned_cols=66  Identities=21%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             cCCCChhhhhcCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhhchHHHHHH
Q 033974           31 AKPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQ--KDRDCATSRFQEINEAYQEKNGSLILMVK   96 (107)
Q Consensus        31 ~~~~~~y~iLgl~~---~a~~~~Ik~ayr~l~~~~HPDk~--~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~   96 (107)
                      +...|+|.+|||+.   .+++.+|.++.++.+.+||||+.  ++.-+..+.|..|+.||++|+|+..|.-|
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy  110 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY  110 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence            45689999999996   58899999999999999999996  22223679999999999999999877643

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5.1e-09  Score=67.63  Aligned_cols=64  Identities=23%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             hhhhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974           23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS   90 (107)
Q Consensus        23 ~~~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~   90 (107)
                      ....++...+....-.||||+++++.++||.++|+++...|||+.+.+--+.    +||+|+++|...
T Consensus        45 y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~~  108 (112)
T KOG0723|consen   45 YKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEGT  108 (112)
T ss_pred             hhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhcc
Confidence            3455666667788889999999999999999999999999999999875444    999999999764

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2e-08  Score=73.40  Aligned_cols=60  Identities=28%  Similarity=0.490  Sum_probs=51.8

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-Hhhch
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-EKNGS   90 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~-~L~d~   90 (107)
                      ......+|.||||..+++.++++.+|..|++.+|||.+.... ..+.|..|.+||. +|+.-
T Consensus        43 ke~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   43 KEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHHHH
Confidence            344568999999999999999999999999999999877643 6789999999998 66543

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=8.4e-07  Score=61.03  Aligned_cols=69  Identities=20%  Similarity=0.439  Sum_probs=56.9

Q ss_pred             hcCCCChhhhhcCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           30 LAKPKDYYKILEVDY--DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~--~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      +....+||.++|...  ..++..++..|...++++|||+.+.+     ..|.+...+|++||.+|.||..|..|..
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            456779999998665  56788888899999999999994443     3477889999999999999999987653

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.71  E-value=7e-05  Score=59.47  Aligned_cols=46  Identities=20%  Similarity=0.324  Sum_probs=35.0

Q ss_pred             hhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 033974           25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR   70 (107)
Q Consensus        25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~   70 (107)
                      +..+.+....+=|+=++|..-++.++||++||+..+.+||||.+..
T Consensus       379 STLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  379 STLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             HHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence            3333333334555666777788999999999999999999998776

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=3.9e-05  Score=53.58  Aligned_cols=56  Identities=32%  Similarity=0.557  Sum_probs=48.3

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEK   87 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L   87 (107)
                      ...+.|.+||+....+..+|+++|+++....|||+..+.       +.+.+.+++|+.||+.+
T Consensus       111 ~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         111 DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            337999999999999999999999999999999995433       35788899999999754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00031  Score=49.06  Aligned_cols=61  Identities=20%  Similarity=0.293  Sum_probs=47.4

Q ss_pred             hhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHH
Q 033974           36 YYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVK   96 (107)
Q Consensus        36 ~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~   96 (107)
                      ++-++|+.+.  ...+.++..|+.+.+.+|||+.....     .+...+..++.||.+|.+|..|..+
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~   70 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY   70 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4455566553  35677999999999999999977653     2456899999999999999877654

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.98  E-value=0.0028  Score=42.43  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL   91 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~   91 (107)
                      ........||||++..+.++|.+.|..|-...+|++++.    .-.-.+|..|.+.|..+.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999998765    456668999999998765

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.59  E-value=0.41  Score=27.56  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=25.3

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLAL   60 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~   60 (107)
                      ....|++|||++..+.+.|-.+|+....
T Consensus         4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    4 VEEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999999999887

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=0.35  Score=36.67  Aligned_cols=58  Identities=24%  Similarity=0.323  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 033974           46 ATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQEKNGSLILMVKIKFNQVQ  103 (107)
Q Consensus        46 a~~~~Ik~ayr~l~~~~HPDk~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~~  103 (107)
                      ++...|..+|+..+...||++...    .....+.|.+|.+||.+|.+...|...+....+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~   65 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFA   65 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHH
Confidence            567889999999999999999752    1235678999999999999854444444433333

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=91.15  E-value=0.81  Score=29.89  Aligned_cols=46  Identities=13%  Similarity=0.194  Sum_probs=34.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhhch
Q 033974           45 DATEEEIRSNYIRLALKWHPDKQKDRD----CATSRFQEINEAYQEKNGS   90 (107)
Q Consensus        45 ~a~~~~Ik~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~   90 (107)
                      ..+..+++.+.|.+-++.|||..+..+    ..++-++.++.-.+.|..+
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            456788999999999999999866553    2345566666666777664

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=87.98  E-value=1.9  Score=30.75  Aligned_cols=41  Identities=27%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchH
Q 033974           43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSL   91 (107)
Q Consensus        43 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~   91 (107)
                      +++|+++||.+|+..+..+|--|        .+.-..|..||+.+-=..
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~r   41 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILMER   41 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999322        355668999998775554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.50  E-value=3.2  Score=27.77  Aligned_cols=54  Identities=20%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHH
Q 033974           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLI   92 (107)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~   92 (107)
                      ..-.||+|++..+.++|.+.|..|-....+.+++.-    -.-.+|..|-+.|..+..
T Consensus        60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSF----YLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF----YLQSKVFRAKERLDEELK  113 (132)
T ss_pred             HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce----eehHHHHHHHHHHHHHHH
Confidence            445899999999999999999999999988887653    333466667777765544

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=80.95  E-value=9.7  Score=23.34  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHh----CCCC
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKW----HPDK   66 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~----HPDk   66 (107)
                      ++|--+++|+++.++..||+.+-++.++++    ||..
T Consensus         2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~   39 (88)
T COG5552           2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA   39 (88)
T ss_pred             ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence            456668899999999999999988887776    5554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		6e-09
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		7e-09
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-09
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		9e-09
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		4e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-07
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		4e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		7e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		8e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		8e-05
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		7e-04

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 28  SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-- 85
           SL    +  Y +L +D +AT ++I+ +Y +LALK+HPDK  D   A  +F+EIN A+   
Sbjct: 11  SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 86  ---------EKNGSLILMVKIKFNQ 101
                    +K GSL L V  +F +
Sbjct: 71  TDATKRNIYDKYGSLGLYVAEQFGE 95

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          DYY++L+V   A+ E I+  Y +LALKWHPDK  ++++ A  RF+++ EAY+
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  +A+++EI+  Y +LA K+HPD  KD   A  +F ++ EAY+
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYE 57

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          YY+IL+V   A+ ++I+  Y R AL+WHPDK  D ++ A  +F+E+ EAY+
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAY 52

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          DYY+IL V   A++E+++  Y RLALK+HPDK      AT  F+ I  AY
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAY 56

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          +YY++L V   A+ E+I+  Y +LAL+WHPDK  D ++ A  +F+ ++EAY+
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + K   YY +L V  +AT+EE++  Y +LALK+HPDK  +      +F++I++AY+
Sbjct: 2  MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYE 54

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + K   YY +L V  DA++ E++  Y ++ALK+HPDK  D      +F++I++AY+
Sbjct: 4  MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYE 56

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SL A   D Y++L V   A++ +I+  Y +LA +WHPDK KD   A  RF +I++AY+
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYE 67

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
          N  F S   + KDYY IL V      + I++ Y RLA K+HPD  K+ D A ++F+++ E
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAE 75
Query: 83 AYQ 85
          A++
Sbjct: 76 AWE 78

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 2   MWDEWV-------DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
           M+DE +       + N ND+Q ++        L   ++ +DYYKIL V  +A ++EI   
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKA 402
Query: 55  YIRLALKWHPD 65
           Y +LAL+WHPD
Sbjct: 403 YRKLALQWHPD 413

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          Y +L V   A E+E++  Y + ALK+HPDK       T +F+EI+EA++
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP---TGDTEKFKEISEAFE 56

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY I+ V      + I++ Y RLA K+HPD  K+ D A +RF+E+ EA++
Sbjct: 5  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWE 55

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 10  NNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPD 65
           N ND+Q ++        L   ++ +DYYKIL V  +A ++EI   Y +LAL+WHPD
Sbjct: 359 NENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          Y +L V   AT+ +I++ Y R    +HPD+      A  RF  I++AY
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	5e-20
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-19
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-19
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-19
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-18
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-18
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-18
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-18
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-18
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	6e-18
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	7e-18
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-18
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-17
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-17
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	5e-17
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	8e-17
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	8e-17
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	9e-17
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-16
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-14
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-13
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-12
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	5e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	8e-08
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	7e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	4e-06
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	7e-06

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 81.5 bits (202), Expect = 5e-20
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V      + I++ Y RLA K+HPD  K+ D A ++F+++ EA+
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAW 77

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 74.5 bits (184), Expect = 2e-19
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY 
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYD 53

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 74.7 bits (184), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            SL A   D Y++L V   A++ +I+  Y +LA +WHPDK KD   A  RF +I++AY+
Sbjct: 9  LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYE 67

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 75.1 bits (185), Expect = 3e-19
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SL    +  Y +L +D +AT ++I+ +Y +LALK+HPDK  D   A  +F+EIN A+ 
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 74.7 bits (184), Expect = 3e-19
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK-DRDCATSRFQEINEAYQ 85
            YY+IL+V   A+ ++I+  Y R AL+WHPDK   +++ A  +F+E+ EAY+
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 73.1 bits (180), Expect = 1e-18
 Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           +YY++L V   A+ E+I+  Y +LAL+WHPDK   +++ A  +F+ ++EAY+
Sbjct: 9  ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 72.4 bits (178), Expect = 3e-18
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
             Y +L V   AT+ +I++ Y R    +HPD+      A  RF  I++AY 
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 71.5 bits (176), Expect = 3e-18
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           DYY++L+V   A+ E I+  Y +LALKWHPDK  ++++ A  RF+++ EAY+
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 71.7 bits (176), Expect = 3e-18
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          K+   ++E  +   E E +    RL LKWHPDK  ++ D A   F+ +     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 74.1 bits (182), Expect = 5e-18
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 71.3 bits (175), Expect = 6e-18
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KD + +L V   A+ +E+   Y +LA+  HPDK      +   F+ +  A  
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNART 77

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 71.7 bits (176), Expect = 7e-18
 Identities = 18/70 (25%), Positives = 34/70 (48%)

Query: 16 TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS 75
          +   S ++          +DYY +L  D  ++ E+I + +   AL+ HPDK  +   A  
Sbjct: 2  SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVE 61

Query: 76 RFQEINEAYQ 85
           FQ++ +A +
Sbjct: 62 TFQKLQKAKE 71

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 70.4 bits (173), Expect = 7e-18
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           DYY+IL V   A++E+++  Y RLALK+HPDK      AT  F+ I  AY 
Sbjct: 7  GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-ATEAFKAIGTAYA 57

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 70.3 bits (173), Expect = 1e-17
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.3 bits (170), Expect = 3e-17
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+
Sbjct: 7  GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYE 57

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 68.4 bits (168), Expect = 5e-17
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           DYY+IL V  +A+++EI+  Y +LA K+HPD  KD   A  +F ++ EAY+
Sbjct: 7  GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 67.6 bits (166), Expect = 8e-17
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           K   YY +L V  DA++ E++  Y ++ALK+HPDK  D      +F++I++AY+
Sbjct: 5  VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYE 56

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 68.1 bits (167), Expect = 8e-17
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + + K    Y +L V   A E+E++  Y + ALK+HPDK       T +F+EI+EA++
Sbjct: 2  NAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG---DTEKFKEISEAFE 56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 69.9 bits (171), Expect = 9e-17
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC------ATSRFQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ              +F EI++A++
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 67.8 bits (166), Expect = 1e-16
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD------RDCATSRFQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ         +    +F EI++A++
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 64.4 bits (157), Expect = 4e-15
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 34 KDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQ 85
          ++ Y +LEV+ +   ++++   Y  LA K HPD+ K+++    A  RF+ I  AY+
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 65.9 bits (160), Expect = 3e-14
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 16 TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS 75
          +    H +   +      +++Y +L V   A+  EIR  + +LALK HPDK  +   A  
Sbjct: 4  SHHHHHHSSGHIEGRHD-QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHG 62

Query: 76 RFQEINEAY 84
           F +IN AY
Sbjct: 63 DFLKINRAY 71

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 59.1 bits (143), Expect = 6e-13
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
               +L ++  A      +R  Y++   ++HPDK  D +    + +++N  Y+
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYK 57

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 57.6 bits (139), Expect = 6e-12
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 25 DFLSLLAKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
          D +    +      +L ++  A      +R  Y++   ++HPDK  D +    + +++N 
Sbjct: 2  DKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNT 57

Query: 83 AYQ 85
           Y+
Sbjct: 58 LYK 60

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 7e-12
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 31  AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAY 84
           ++ +DYYKIL V  +A ++EI   Y +LAL+WHPD  ++   +  A  +F +I  A 
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 47.7 bits (114), Expect = 6e-09
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 34 KDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          K+  +IL +  +  T+++++  + ++ L  HPDK            +INEA  
Sbjct: 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF----LATKINEAKD 62

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 31 AKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          A  +   ++L++          ++  Y + +L  HPDK        +  QE+N  + 
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWG 60

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 47.3 bits (112), Expect = 5e-08
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 35 DYYKIL--EVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINEAYQ 85
          DY+ +      Y    + +   +  L  ++HPDK     Q ++  A  +   IN+A+Q
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQ 59

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 46.8 bits (110), Expect = 8e-08
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 35  DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQE 86
             +K + +    T E+++  Y +  L  HPDK   +     A   F E+N+A+ E
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSE 172

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-------ATSRFQE 79
          L  +      +K + +        +R +Y R  L  HPDK + +         A   F+ 
Sbjct: 33 LQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFEL 92

Query: 80 INEAYQE 86
          + EA+  
Sbjct: 93 LQEAWDH 99

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 44.2 bits (104), Expect = 7e-07
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 33 PKDYYKILEVD-------YDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
             +Y++           +   +  +R  Y +L  + HPD  +     + +   +N+AY 
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYH 66

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQE 86
          +K + +    T E+++  Y +  L  HP K   +     A   F E+N+A+ E
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSE 88

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 30  LAKPKDYYKI--LEVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINE 82
               +DY+ +      +     +++  Y +L    HPD      Q ++D +      +N+
Sbjct: 39  PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVND 98

Query: 83  AYQ 85
           AY+
Sbjct: 99  AYK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.88
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.88
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.87
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.87
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.87
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.87
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.87
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.87
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.86
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.86
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.86
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.86
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.85
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.85
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.85
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.84
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.82
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.81
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.8
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.79
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.79
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.79
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.77
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.77
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.76
2guz_A	71	Mitochondrial import inner membrane translocase su	99.76
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.76
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.76
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.75
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.74
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.68
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.67
2guz_B	65	Mitochondrial import inner membrane translocase su	99.27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	91.02

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=6.5e-23  Score=125.29  Aligned_cols=70  Identities=33%  Similarity=0.551  Sum_probs=63.4

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ....++|+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||..|..|+.++
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   73 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG   73 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence            3567999999999999999999999999999999999876568999999999999999999888777643

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=131.36  Aligned_cols=71  Identities=24%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ....|||+||||+++++.++||++||++++++|||++++.+.+.+.|++|++||++|+||..|..|+.++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   87 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR   87 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence            45689999999999999999999999999999999998655689999999999999999999998887653

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=2.6e-22  Score=125.81  Aligned_cols=75  Identities=21%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             CccchhhhhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHH
Q 033974           19 DSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILM   94 (107)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   94 (107)
                      .+...+.....+....++|+||||+++++.++||++||++++++|||+++++. +.+.|++|++||++|+||..|.
T Consensus        12 ~s~~~~~~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           12 FTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CCHHHHHHHHHHHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHHHhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCccccc
Confidence            34445566666777899999999999999999999999999999999998754 8899999999999999997653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.87  E-value=1.8e-22  Score=122.89  Aligned_cols=67  Identities=37%  Similarity=0.615  Sum_probs=61.5

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ..+||+||||+++++.++||++|+++++++|||+++++. +.+.|+.|++||++|+||..|..|+.++
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   68 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYG   68 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            368999999999999999999999999999999998754 8899999999999999999988877654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.87  E-value=2e-22  Score=121.58  Aligned_cols=68  Identities=31%  Similarity=0.560  Sum_probs=61.0

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      +....+||+||||+++++.++||++|+++++++|||++++.   .+.|+.|++||++|+||..|..|+.+|
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            45678999999999999999999999999999999999864   589999999999999999998887765

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=3.2e-22  Score=124.75  Aligned_cols=69  Identities=33%  Similarity=0.523  Sum_probs=63.1

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ....|||+||||+++++.++||++||++++++|||+++++. +.+.|++|++||++|+||..|..|+.++
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~g   82 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSNEEKRTNYDHYG   82 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT-HHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh-HHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            35679999999999999999999999999999999998754 8899999999999999999888777664

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=122.88  Aligned_cols=69  Identities=36%  Similarity=0.551  Sum_probs=62.3

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ....++|+||||+++++.++||++|+++++++|||+++.+ .+.+.|+.|++||++|+||..|..|+.++
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~   72 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSNPEKRKQYDQFG   72 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            3567999999999999999999999999999999999875 48899999999999999998888776543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=4.5e-22  Score=124.07  Aligned_cols=69  Identities=33%  Similarity=0.525  Sum_probs=63.1

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ...+||+||||+++++.++||++||++++++|||+++.+ .+.+.|++|++||++|+||..|..|+.++.
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH-HHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            467999999999999999999999999999999999864 489999999999999999999988877653

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=6e-22  Score=125.99  Aligned_cols=68  Identities=25%  Similarity=0.403  Sum_probs=62.3

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ....+||+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||..|..|+.
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~   81 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR   81 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            45789999999999999999999999999999999998766689999999999999999988886654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=1e-21  Score=126.92  Aligned_cols=72  Identities=32%  Similarity=0.524  Sum_probs=65.8

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHHH
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQV  102 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q~  102 (107)
                      ....++|+||||+++++.++||++|++|++++|||++++.+.+.+.|++|++||++|+||..|..|+.++..
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            356799999999999999999999999999999999987667899999999999999999999988876643

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.7e-22  Score=122.22  Aligned_cols=69  Identities=35%  Similarity=0.637  Sum_probs=62.3

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ...++|+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||..|..|+.++
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g   76 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG   76 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence            457999999999999999999999999999999998875 358899999999999999998888777654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=123.99  Aligned_cols=68  Identities=34%  Similarity=0.661  Sum_probs=62.5

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .|||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||..|..|+.++.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~   70 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR   70 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            4899999999999999999999999999999998865 4588999999999999999999998887763

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.85  E-value=1.5e-21  Score=125.87  Aligned_cols=73  Identities=26%  Similarity=0.385  Sum_probs=65.1

Q ss_pred             hhcCCCChhhhhcCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           29 LLAKPKDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a-~~~~Ik~ayr~l~~~~HPDk~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ......++|+||||++++ +.++||++||++++++|||++++   .+.+.+.|++|++||++|+||..|..|+.++.
T Consensus        10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            345678999999999999 99999999999999999999987   34588999999999999999999988877653

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.85  E-value=6.3e-22  Score=124.39  Aligned_cols=68  Identities=28%  Similarity=0.421  Sum_probs=60.3

Q ss_pred             cCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ....+||+||||+++++.++||++|+++++++|||+++..      ..+.+.|++|++||++|+||..|..|+.
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~   86 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDL   86 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4578999999999999999999999999999999998742      4588999999999999999987775543

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.7e-21  Score=122.21  Aligned_cols=69  Identities=33%  Similarity=0.582  Sum_probs=62.1

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ...+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||..|..|+.++
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   76 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG   76 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            457999999999999999999999999999999998765 468899999999999999998888776643

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-21  Score=122.72  Aligned_cols=68  Identities=32%  Similarity=0.552  Sum_probs=62.0

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      +....++|+||||+++++.++||++|+++++++|||++++.   .+.|++|++||++|+||..|..|+.++
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~   71 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG   71 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence            44678999999999999999999999999999999999774   479999999999999999999888765

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.84  E-value=5.3e-22  Score=126.99  Aligned_cols=68  Identities=40%  Similarity=0.633  Sum_probs=62.2

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ..++|+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||..|..|+.++
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~   69 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence            46899999999999999999999999999999999865558899999999999999999998877654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.82  E-value=1.6e-20  Score=131.32  Aligned_cols=67  Identities=33%  Similarity=0.517  Sum_probs=62.4

Q ss_pred             CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .|||+||||+++++.++||+|||++++++|||++++.+.+.+.|+.|++||++|+||..|..|+.++
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~   68 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG   68 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence            5899999999999999999999999999999999766668999999999999999999998888765

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=6.6e-20  Score=124.62  Aligned_cols=69  Identities=28%  Similarity=0.383  Sum_probs=62.1

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD------CATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~------~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ...|||+||||+++++.++||++||++++++|||+++...      .+.+.|..|++||++|+||..|..|+...
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4679999999999999999999999999999999987652      36799999999999999999998877654

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.80  E-value=3.2e-20  Score=116.04  Aligned_cols=62  Identities=27%  Similarity=0.449  Sum_probs=56.3

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSLIL   93 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~r   93 (107)
                      ...++|+||||+++++.++||++||+|++++|||++++. +.+.+.|++|++||++|+|...|
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            456899999999999999999999999999999999876 45889999999999999997654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=126.90  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=59.6

Q ss_pred             hhcCCCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           29 LLAKPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      ......|||+||||+++  ++..+||++||+|++++|||++++..     .+.+.|..|++||++|+||..|..|+
T Consensus        38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd  113 (207)
T 3bvo_A           38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYL  113 (207)
T ss_dssp             CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            33456899999999986  79999999999999999999987642     36688999999999999998887664

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.79  E-value=1.3e-19  Score=111.07  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=53.8

Q ss_pred             CCChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHH
Q 033974           33 PKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMV   95 (107)
Q Consensus        33 ~~~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~   95 (107)
                      ..++|+||||+++  ++.++||++||++++++|||++++    .+.|++|++||++|+|+..|..
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH
Confidence            3589999999999  999999999999999999999865    4899999999999999987764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.77  E-value=6.2e-19  Score=121.95  Aligned_cols=64  Identities=20%  Similarity=0.349  Sum_probs=57.3

Q ss_pred             ChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           35 DYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        35 ~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      |||+||||++++  +..+||++||++++++|||++++..     .+.+.|..|++||++|+||..|..|+.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~   72 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            799999999998  9999999999999999999988753     356899999999999999988876554

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.77  E-value=2e-19  Score=113.31  Aligned_cols=63  Identities=22%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             hhhhcCC-CChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhc
Q 033974           27 LSLLAKP-KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNG   89 (107)
Q Consensus        27 ~~~~~~~-~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d   89 (107)
                      ...+... .++|++|||++.++.++||+|||++++++|||++++.+   .|.+.|++|++||++|.+
T Consensus        25 l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           25 MHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             GGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            3333334 58999999999999999999999999999999987653   478999999999999976

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.76  E-value=2.7e-20  Score=121.40  Aligned_cols=62  Identities=18%  Similarity=0.367  Sum_probs=56.4

Q ss_pred             CCChhhhhcCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           33 PKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ..++|+||||+++++.  ++||++||+|++++|||++++    .+.|++|++||++|+||..|..++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            4589999999999998  999999999999999999876    4799999999999999998887653

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=4.1e-19  Score=106.73  Aligned_cols=57  Identities=25%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             CCCChhhhhcCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHH
Q 033974           32 KPKDYYKILEVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLI   92 (107)
Q Consensus        32 ~~~~~y~iLgl~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~   92 (107)
                      ...++|+||||++ +++.++||++||+|++++|||++++    .+.|++|++||++|+++..
T Consensus        12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~   69 (71)
T 2guz_A           12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGI   69 (71)
T ss_dssp             CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhh
Confidence            3468999999999 7999999999999999999999654    4799999999999999753

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.76  E-value=2.7e-19  Score=124.88  Aligned_cols=64  Identities=23%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhhchHHHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQEKNGSLILMV   95 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~d~~~r~~   95 (107)
                      ...++|+||||++.++.++||++||++++++|||++++..   .+.+.|.+|++||++|+|+..|..
T Consensus       115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~  181 (182)
T 1n4c_A          115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL  181 (182)
T ss_dssp             TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhh
Confidence            3479999999999999999999999999999999987653   278999999999999999987754

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.76  E-value=5e-20  Score=138.55  Aligned_cols=73  Identities=32%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             hhhhhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 033974           26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKF   99 (107)
Q Consensus        26 ~~~~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~   99 (107)
                      .........|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|++|++||++|+||..|..|+.+
T Consensus        20 ~~~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~   92 (329)
T 3lz8_A           20 FQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQL   92 (329)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence            333445568999999999999999999999999999999998875 4899999999999999999999988876

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.75  E-value=3.7e-19  Score=114.62  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHhhchH
Q 033974           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQEKNGSL   91 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L~d~~   91 (107)
                      ......+||+|||++. ++.++||+|||++++++||||+++.       ..|.+.|++|++||++|+|+.
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3445679999999996 9999999999999999999997632       147899999999999999973

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.74  E-value=2.1e-19  Score=124.67  Aligned_cols=65  Identities=18%  Similarity=0.373  Sum_probs=57.0

Q ss_pred             CCChhhhhcCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           33 PKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      ..++|+||||+++++  .++||+|||++++++|||++++    .+.|++|++||++|+||..|..|+.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999988  6999999999999999999876    3789999999999999999999988873

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.68  E-value=1.6e-17  Score=115.82  Aligned_cols=65  Identities=17%  Similarity=0.364  Sum_probs=57.5

Q ss_pred             cCCCChhhhh------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           31 AKPKDYYKIL------EVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        31 ~~~~~~y~iL------gl~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ....|||+||      |+++ +++..+||++||+|++++|||++++   +.+.|..|++||++|+||..|..|+.
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~   79 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYML   79 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            3467999999      4665 8999999999999999999999887   56899999999999999988886655

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.67  E-value=6.4e-18  Score=136.84  Aligned_cols=72  Identities=31%  Similarity=0.465  Sum_probs=40.0

Q ss_pred             hcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 033974           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFNQ  101 (107)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~q  101 (107)
                      .....|||+||||+++|+.++||+|||++++++|||++++.+.+.+.|++|++||++|+||..|..|+.+|.
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            445689999999999999999999999999999999997666689999999999999999999999888763

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=5.2e-12  Score=74.55  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=47.1

Q ss_pred             CChhhhhcCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhch
Q 033974           34 KDYYKILEVDYD---ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGS   90 (107)
Q Consensus        34 ~~~y~iLgl~~~---a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~   90 (107)
                      ...|.||||+++   ++.++|+++||+|....|||++++    .....+|+.|+++|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            357899999998   999999999999999999999765    36777999999999765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.12  E-value=5.4e-11  Score=87.86  Aligned_cols=66  Identities=33%  Similarity=0.530  Sum_probs=56.7

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      ...++|.+||+...++.++|+++|+++++++|||+.+.+   ..+.+.|..|.+||++|+||..|..|+
T Consensus       380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd  448 (450)
T 2y4t_A          380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD  448 (450)
T ss_dssp             HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC----
T ss_pred             cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhcc
Confidence            456899999999999999999999999999999998875   358899999999999999998777554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=91.02  E-value=0.16  Score=40.32  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=37.3

Q ss_pred             hhcCCCChhhhhcCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 033974           29 LLAKPKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQE   86 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~   86 (107)
                      ......++|.+||++-+...  .+|+++||++++.-+++        .+.+..|..|+.+
T Consensus       624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            33456679999999766554  67999999999966554        3677777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-11
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	6e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	8e-09
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-08
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-07
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	0.001

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 53.5 bits (128), Expect = 1e-11
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 6e-11
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY 
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYD 53

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (123), Expect = 1e-10
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSR------FQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ     A +       F EI++A++
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-10
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          K+   ++E  +   E E +    RL LKWHPDK  ++ D A   F+ +     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.9 bits (111), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQ 85
          +L   +  +K + +    T E+++  Y +  L  HPDK         A   F E+N+A+ 
Sbjct: 28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 87

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 44.2 bits (104), Expect = 6e-08
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 31 AKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          A  +   ++L++          ++  Y + +L  HPDK           QE+N  + 
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLWG 60

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (98), Expect = 4e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 35 DYYKILEV--DYDATEEEIRSNYIRLALKWHPDKQK-----DRDCATSRFQEINEAYQ 85
          DY+ +  +   Y    + +   +  L  ++HPDK       ++  A  +   IN+A+Q
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQ 59

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 32 KPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +      +L ++  A      +R  Y++   ++HPDK  D +      +++N  Y+
Sbjct: 6  ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYK 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.85
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.83
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.8
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.79
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.75
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.6e-25  Score=133.35  Aligned_cols=68  Identities=40%  Similarity=0.633  Sum_probs=64.1

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      ..|||+||||+++||.++||+||+++++++|||++++.+.+.+.|..|++||++|+||..|..|+.+|
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g   69 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence            57999999999999999999999999999999999887778899999999999999999999888876

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-23  Score=124.48  Aligned_cols=67  Identities=37%  Similarity=0.615  Sum_probs=62.4

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKFN  100 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~~  100 (107)
                      .+|||+||||+++++.++|+++|+++++++|||++..+. +.+.|..|++||++|+||..|..|++++
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~-~~~~~~~i~~Ay~vLsdp~~R~~YD~~g   68 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSDPRKREIFDRYG   68 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchh-HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            369999999999999999999999999999999998765 7889999999999999999999888765

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.8e-22  Score=125.27  Aligned_cols=67  Identities=28%  Similarity=0.424  Sum_probs=59.4

Q ss_pred             CCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 033974           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQEKNGSLILMVKIK   98 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~r~~~~~   98 (107)
                      ...|||+||||+++++.++||++|+++++.+|||++...      ..+.+.|+.|++||++|+||..|..|+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~   86 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDL   86 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            457999999999999999999999999999999997664      3478899999999999999987775543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.83  E-value=1.8e-22  Score=129.95  Aligned_cols=63  Identities=19%  Similarity=0.412  Sum_probs=56.6

Q ss_pred             CCChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 033974           33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKIKF   99 (107)
Q Consensus        33 ~~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~~~   99 (107)
                      ..++|+||||+.+|  +.++||+|||+|++++||||+++.    +.|++|++||++|+||..|..|+.+
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            56899999999998  788999999999999999998764    6899999999999999988877643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.80  E-value=2.3e-20  Score=113.12  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             CCCChhhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 033974           32 KPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQEKNGSLILMVKI   97 (107)
Q Consensus        32 ~~~~~y~iLgl~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~~~   97 (107)
                      ...++|+||||++++  +.++||+|||++++++|||++++    .+.|++|++||++|+|+..|..++
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~   72 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN   72 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHc
Confidence            346899999999987  99999999999999999999865    378999999999999998776543

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.1e-20  Score=109.91  Aligned_cols=62  Identities=21%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             ChhhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhhchHHHHHH
Q 033974           35 DYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQEKNGSLILMVK   96 (107)
Q Consensus        35 ~~y~iLgl~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~~   96 (107)
                      |||+||||+++  ++.++|+++|+++++.+|||+..+.     ..+...|..|++||++|+||..|..|
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Y   70 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY   70 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            79999999985  5699999999999999999997654     23678899999999999999887754

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-19  Score=110.10  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=54.1

Q ss_pred             CCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhhchH
Q 033974           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQEKNGSL   91 (107)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~   91 (107)
                      ..++|+||||+.+++.++||+|||+++++||||++++. +.+.+.|+.|++||++|+++.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~   74 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999998875 458999999999999998753

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.5e-19  Score=113.53  Aligned_cols=67  Identities=24%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             hhcCCCChhhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhhchHHHHH
Q 033974           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQEKNGSLILMV   95 (107)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~d~~~r~~   95 (107)
                      .+....++|++|||++.++.++||++||++++.+|||++++.   ..+.+.|..|++||++|+||..|..
T Consensus        28 vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~   97 (98)
T d1nz6a_          28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL   97 (98)
T ss_dssp             TSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             hcCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhc
Confidence            345566889999999999999999999999999999997765   3478899999999999999987653