Citrus Sinensis ID: 034005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN
Secondary Structure (PSIPRED)
ccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEcccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEccccccEEEEcccccccHHHccccccc
Coil and Loop (DISEMBL)
mgrgvssgggqsslgylfsdgeapkpaakegqaqnnaptqkpapvaqpvditkqlpaginstsmnnymradgqntgnfitdrpstkvhaapgggsslgylfgggsn
Flexible Loop (DISEMBL)
mgrgvssgggqssLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPstkvhaapgggsslgylfgggsn
Low Complexity Region (SEG)
MgrgvssgggqsslgYLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPgggsslgylfgggsN
Disordered region (IsUnstruct)
**********************************************************************************************************
Disordered Region (DISOPRED)
*******GGGQSSLGYLFSD**************************************************DGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG***
Disordered Region (DISEMBL)
**********QSSLGYLFSDGE***********************AQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN
Disordered Region (DISPRO)
*************************************************************TSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9LE54	110	Protein SPIRAL1-like 2 OS	yes	no	0.990	0.954	0.702	2e-34
B3H4F1	113	Protein SPIRAL1-like 1 OS	no	no	0.924	0.867	0.681	2e-34
Q2QQ99	101	Protein SPIRAL1-like 3 OS	yes	no	0.764	0.801	0.636	6e-23
Q9SJW3	119	Protein SPIRAL1 OS=Arabid	no	no	0.971	0.865	0.512	3e-22
Q7Y1L9	116	Protein SPIRAL1-like 1 OS	no	no	0.518	0.474	0.839	4e-19
Q9LF22	127	Protein SPIRAL1-like 4 OS	no	no	0.952	0.795	0.508	5e-19
Q2R0W8	115	Protein SPIRAL1-like 2 OS	no	no	0.481	0.443	0.823	2e-18
Q9S7P8	122	Protein SPIRAL1-like 3 OS	no	no	0.943	0.819	0.472	3e-15
Q8LGD1	99	Protein SPIRAL1-like 5 OS	no	no	0.377	0.404	0.75	2e-11
Q7XQ83	127	Protein SPIRAL1-like 4 OS	no	no	0.830	0.692	0.361	4e-06

>sp|Q9LE54|SP1L2_ARATH Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 87/111 (78%), Gaps = 6/111 (5%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAA-----KEGQAQNNAPTQKPAPVAQPVDITKQL 55
           MGRGVS+GGGQSSLGYLF  GEAPK AA      E ++  +AP  + A  A  VD  KQ+
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAA-AANAVDSIKQV 59

Query: 56  PAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           PAG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 60  PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGGSN 110

Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.
Arabidopsis thaliana (taxid: 3702)

>sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 87/116 (75%), Gaps = 18/116 (15%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAP---------TQKPAP---VAQP 48
           MGRGVS GGGQSSLGYLF  GEAPKPA       NNAP         +  P+P    AQ 
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAI------NNAPAPSSETLPISADPSPKHVAAQT 54

Query: 49  VDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
           V++TKQ+PAGIN +S NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGGG
Sbjct: 55  VNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 110

Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QQ99|SP1L3_ORYSJ Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica GN=Os12g0502000 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 7/88 (7%)

Query: 16  YLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNT 75
           YLF  GEAPK A K       AP QKPAP +   +  K++PAGI S+  NNYMRA+GQN 
Sbjct: 16  YLFGGGEAPKSAEKP------APVQKPAPSSS-AEKLKEIPAGIQSSKANNYMRAEGQNC 68

Query: 76  GNFITDRPSTKVHAAPGGGSSLGYLFGG 103
           GNF+TDRPSTKV AAPGGGSSL YLF G
Sbjct: 69  GNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SJW3|SPR1_ARATH Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 69/119 (57%), Gaps = 16/119 (13%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAP---------------V 45
           MGRG S GGGQSSL YLF             +         PAP                
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 46  AQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
            +P ++ KQ+PAGI  T +NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSL YLF GG
Sbjct: 61  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGG 118

Required for directional control of cell elongation. Stabilizes growing ends of cortical microtubules and influences their dynamic properties. Acts redundantly with SP1Ls in maintaining the cortical microtubules organization essential for anisotropic cell growth. Plays a key role in salt stress-induced microtubules disassembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0417800 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 49/56 (87%), Gaps = 1/56 (1%)

Query: 49  VDITKQLPAGIN-STSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
            D TKQ+PAGI  S S NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 60  ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LF22|SP1L4_ARATH Protein SPIRAL1-like 4 OS=Arabidopsis thaliana GN=SP1L4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 17/118 (14%)

Query: 3   RGVSSGGGQSSLGYLFSDGEAP----KPAAKEG-------QAQNNAPTQKPAPVAQPV-- 49
           RGV+SGGG+SSLGYLF  GE+     KP AK G           +    +P         
Sbjct: 5   RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64

Query: 50  ---DITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
              + T++  AG+   S NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSLGYLFG G
Sbjct: 65  GDKNKTEENSAGVRG-SPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFGSG 121

Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R0W8|SP1L2_ORYSJ Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica GN=Os11g0629400 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 45/51 (88%)

Query: 53  KQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
           K++PAGI ST  NNY RA GQN GNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 64  KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7P8|SP1L3_ARATH Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 10/110 (9%)

Query: 3   RGVSSGGGQSSLGYLFSDGE--APKPAAKEGQAQNNAPTQKPAPVAQPVDI-------TK 53
           RGV++G  +SSLGYLF  G+  +   A           T       +P+          K
Sbjct: 5   RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64

Query: 54  QLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
           +  AG+   S NNY R++GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 65  KTSAGVRG-SPNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113

Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGD1|SP1L5_ARATH Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 63  SMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 102
           S NNY R  GQN+GNF+TDRP+TKV + PGGGSSLGYLFG
Sbjct: 58  SNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFG 97

Acts redundantly with SPR1 in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XQ83|SP1L4_ORYSJ Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica GN=Os04g0578300 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 20/108 (18%)

Query: 14  LGYLFS---DGEAPKPAAKEGQAQNNAP--------------TQKPAPVAQPVDITKQLP 56
           LGYLF    +   P  + K  Q  N AP                +    A P+      P
Sbjct: 17  LGYLFEPEPEDIIPDHSTKSVQGTNKAPKGNIVLGDKMASDEADQEHQAAAPLKKEDSNP 76

Query: 57  AGINSTSMNNYMRAD--GQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 102
             ++S S +N    +  G N+G  ITDRPST+V  APGG SSLG+LFG
Sbjct: 77  I-VSSRSASNIYHTNQVGNNSGLLITDRPSTRVRCAPGGPSSLGFLFG 123

Acts in maintaining the cortical microtubules organization essential for anisotropic cell growth.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
224098996	113	predicted protein [Populus trichocarpa]	1.0	0.938	0.761	1e-34
21592628	110	putative nitrilase-associated protein [A	0.981	0.945	0.723	2e-33
9797761	491	Contains similarity to PIR7A protein fro	0.924	0.199	0.681	3e-33
255542002	113	SP1L, putative [Ricinus communis] gi|223	0.858	0.805	0.744	5e-33
15222255	110	protein SPIRAL1-like2 [Arabidopsis thali	0.990	0.954	0.702	7e-33
297841653	110	hypothetical protein ARALYDRAFT_476049 [	0.981	0.945	0.705	8e-33
186478886	113	protein SPIRAL1-like1 [Arabidopsis thali	0.924	0.867	0.681	1e-32
224112102	113	predicted protein [Populus trichocarpa]	0.971	0.911	0.698	4e-32
312282037	117	unnamed protein product [Thellungiella h	0.924	0.837	0.652	6e-32
169635145	107	putative nitrilase-associated protein [S	0.990	0.981	0.707	1e-31

>gi|224098996|ref|XP_002311347.1| predicted protein [Populus trichocarpa] gi|118484460|gb|ABK94106.1| unknown [Populus trichocarpa] gi|118485184|gb|ABK94453.1| unknown [Populus trichocarpa] gi|222851167|gb|EEE88714.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 89/113 (78%), Gaps = 7/113 (6%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQ-------NNAPTQKPAPVAQPVDITK 53
           MGRGVS+GGGQSSLGYLF  GEAPKP     QA        NN P  KPA   QP DI K
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKPGTNNAQAAPSESLPANNPPPSKPAAAPQPADINK 60

Query: 54  QLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           Q+PAGINSTS NNY+RADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN
Sbjct: 61  QVPAGINSTSTNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592628|gb|AAM64577.1| putative nitrilase-associated protein [Arabidopsis thaliana]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 89/112 (79%), Gaps = 8/112 (7%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAA-----KEGQAQNNAP-TQKPAPVAQPVDITKQ 54
           MGRGVS+GGGQSSLGYLF  GEAPK AA      E ++  +AP TQ  AP A  VD  KQ
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAPNA--VDSIKQ 58

Query: 55  LPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           +PAG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 59  VPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLAYLFGGGSN 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9797761|gb|AAF98579.1|AC013427_22 Contains similarity to PIR7A protein from Oryza sativa gb|Z34271 and contains an alpha/beta hydrolase fold PF|00561 [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 87/116 (75%), Gaps = 18/116 (15%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAP---------TQKPAP---VAQP 48
           MGRGVS GGGQSSLGYLF  GEAPKPA       NNAP         +  P+P    AQ 
Sbjct: 379 MGRGVSVGGGQSSLGYLFGSGEAPKPAI------NNAPAPSSETLPISADPSPKHVAAQT 432

Query: 49  VDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
           V++TKQ+PAGIN +S NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGGG
Sbjct: 433 VNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542002|ref|XP_002512065.1| SP1L, putative [Ricinus communis] gi|223549245|gb|EEF50734.1| SP1L, putative [Ricinus communis]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 79/98 (80%), Gaps = 7/98 (7%)

Query: 16  YLFSDGEAPKPAAK-------EGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYM 68
           YLF DGEAPKP  K       + Q  N+ P  KPA  +QPVDI+KQ+PAGINSTS NNYM
Sbjct: 16  YLFGDGEAPKPTRKNAQPAPNDAQVVNDLPPSKPAVASQPVDISKQVPAGINSTSTNNYM 75

Query: 69  RADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           RADGQNTGNF+TDRPSTKVHAAPGGGSSLGYLFGGGSN
Sbjct: 76  RADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGGGSN 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222255|ref|NP_177083.1| protein SPIRAL1-like2 [Arabidopsis thaliana] gi|42572039|ref|NP_974110.1| protein SPIRAL1-like2 [Arabidopsis thaliana] gi|75173888|sp|Q9LE54.1|SP1L2_ARATH RecName: Full=Protein SPIRAL1-like 2 gi|6730644|gb|AAF27065.1|AC008262_14 F4N2.18 [Arabidopsis thaliana] gi|12325084|gb|AAG52493.1|AC018364_11 putative nitrilase-associated protein; 69823-70365 [Arabidopsis thaliana] gi|88900378|gb|ABD57501.1| At1g69230 [Arabidopsis thaliana] gi|332196777|gb|AEE34898.1| protein SPIRAL1-like2 [Arabidopsis thaliana] gi|332196778|gb|AEE34899.1| protein SPIRAL1-like2 [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 87/111 (78%), Gaps = 6/111 (5%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAA-----KEGQAQNNAPTQKPAPVAQPVDITKQL 55
           MGRGVS+GGGQSSLGYLF  GEAPK AA      E ++  +AP  + A  A  VD  KQ+
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAA-AANAVDSIKQV 59

Query: 56  PAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           PAG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 60  PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGGSN 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841653|ref|XP_002888708.1| hypothetical protein ARALYDRAFT_476049 [Arabidopsis lyrata subsp. lyrata] gi|297334549|gb|EFH64967.1| hypothetical protein ARALYDRAFT_476049 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 88/112 (78%), Gaps = 8/112 (7%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKE---GQAQNNAPT---QKPAPVAQPVDITKQ 54
           MGRGVS+GGGQSSLGYLF  GEAPKP+       + Q++AP    Q  AP A  VD  KQ
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKPSTVNKAPAETQSSAPAPPLQTAAPKA--VDSIKQ 58

Query: 55  LPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           +PAG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 59  VPAGLNSNSTNNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLNYLFGGGSN 110

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478886|ref|NP_001117356.1| protein SPIRAL1-like1 [Arabidopsis thaliana] gi|391359333|sp|B3H4F1.1|SP1L1_ARATH RecName: Full=Protein SPIRAL1-like 1 gi|332192560|gb|AEE30681.1| protein SPIRAL1-like1 [Arabidopsis thaliana]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 87/116 (75%), Gaps = 18/116 (15%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAP---------TQKPAP---VAQP 48
           MGRGVS GGGQSSLGYLF  GEAPKPA       NNAP         +  P+P    AQ 
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAI------NNAPAPSSETLPISADPSPKHVAAQT 54

Query: 49  VDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
           V++TKQ+PAGIN +S NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGGG
Sbjct: 55  VNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112102|ref|XP_002316083.1| predicted protein [Populus trichocarpa] gi|118483990|gb|ABK93882.1| unknown [Populus trichocarpa] gi|222865123|gb|EEF02254.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 89/116 (76%), Gaps = 13/116 (11%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQ----------KPAPVAQPVD 50
           MGRGVS+GGGQSSLGYLF  GEAPKP+    QA   AP++          KPA   QP +
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKPSTNNAQA---APSEVQPASNPPPPKPAAAPQPAE 57

Query: 51  ITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
           I ++ PAGINSTS NNY+RADGQN GNFITDRPSTKVHAAPGGGSSLGYLFGGGSN
Sbjct: 58  INREFPAGINSTSTNNYLRADGQNAGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282037|dbj|BAJ33884.1| unnamed protein product [Thellungiella halophila]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 84/118 (71%), Gaps = 20/118 (16%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQK--------------PAPVA 46
           MGRGVS+GGGQSSLGYLF  GEAPKPA       NNAP +                    
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKPAV------NNAPAETQPAPTPPPPSPAQPKTEAP 54

Query: 47  QPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
           +PVD+TKQ PAG+NS S NNYMRADGQNTGNF+TDRPSTKVH+APGGGSSL YLFGGG
Sbjct: 55  KPVDVTKQGPAGLNSNSANNYMRADGQNTGNFLTDRPSTKVHSAPGGGSSLDYLFGGG 112

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169635145|gb|ACA58349.1| putative nitrilase-associated protein [Sandersonia aurantiaca]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 80/106 (75%), Gaps = 1/106 (0%)

Query: 1   MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNA-PTQKPAPVAQPVDITKQLPAGI 59
           MGRGVS GGGQSSLGYLF DGEA KPA     A  NA P  KP+  + P D  KQ+PAGI
Sbjct: 1   MGRGVSCGGGQSSLGYLFGDGEAHKPATSIPPAAGNAEPALKPSGASPPADNIKQVPAGI 60

Query: 60  NSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGS 105
              + NNY+R DGQN GNFITDRPSTKVHAAPGGGSSLGYLFG GS
Sbjct: 61  QGNNANNYLRMDGQNCGNFITDRPSTKVHAAPGGGSSLGYLFGDGS 106

Source: Sandersonia aurantiaca

Species: Sandersonia aurantiaca

Genus: Sandersonia

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:4515102592	113	SP1L1 "SPIRAL1-like1" [Arabido	0.716	0.672	0.621	2.4e-21
TAIR|locus:2026441	110	SP1L2 "AT1G69230" [Arabidopsis	0.698	0.672	0.621	1.5e-19
TAIR|locus:2044224	119	SPR1 "AT2G03680" [Arabidopsis	0.707	0.630	0.494	1.1e-14
TAIR|locus:2076537	122	SP1L3 "AT3G02180" [Arabidopsis	0.707	0.614	0.423	8.4e-10
TAIR|locus:2180902	127	SP1L4 "AT5G15600" [Arabidopsis	0.707	0.590	0.423	1.8e-09
TAIR|locus:505006517	99	SP1L5 "AT4G23496" [Arabidopsis	0.641	0.686	0.468	2e-08

TAIR|locus:4515102592 SP1L1 "SPIRAL1-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 51/82 (62%), Positives = 61/82 (74%)

Query:    16 YLFSDGEAPKPAAKEGQAQNNA--P-TQKPAP---VAQPVDITKQLPAGINSTSMNNYMR 69
             YLF  GEAPKPA     A ++   P +  P+P    AQ V++TKQ+PAGIN +S NNY+R
Sbjct:    16 YLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIR 75

Query:    70 ADGQNTGNFITDRPSTKVHAAP 91
             ADGQNTGNF+TDRPSTKVHAAP
Sbjct:    76 ADGQNTGNFLTDRPSTKVHAAP 97

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2026441 SP1L2 "AT1G69230" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 51/82 (62%), Positives = 59/82 (71%)

Query:    16 YLFSDGEAPKPAAKE---GQAQNNA---PTQKPAPVAQPVDITKQLPAGINSTSMNNYMR 69
             YLF  GEAPK AA      + +++A   PTQ  A  A  VD  KQ+PAG+NS S NNYMR
Sbjct:    16 YLFGSGEAPKLAAVNKTPAETESSAHAPPTQ--AAAANAVDSIKQVPAGLNSNSANNYMR 73

Query:    70 ADGQNTGNFITDRPSTKVHAAP 91
             A+GQNTGNFITDRPSTKVH+AP
Sbjct:    74 AEGQNTGNFITDRPSTKVHSAP 95

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044224 SPR1 "AT2G03680" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 45/91 (49%), Positives = 52/91 (57%)

Query:    16 YLFS-DGEAPKPAAKEGQA---QNNAPTQKPAPVA-----------QPVDITKQLPAGIN 60
             YLF  D  APKP      A    NN P      V            +P ++ KQ+PAGI 
Sbjct:    16 YLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTSVEPAELNKQIPAGIK 75

Query:    61 STSMNNYMRADGQNTGNFITDRPSTKVHAAP 91
              T +NNY RA+GQNTGNF+TDRPSTKVHAAP
Sbjct:    76 -TPVNNYARAEGQNTGNFLTDRPSTKVHAAP 105

GO:0003674 "molecular_function" evidence=ND

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0055028 "cortical microtubule" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009574 "preprophase band" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0051211 "anisotropic cell growth" evidence=IMP

GO:0043622 "cortical microtubule organization" evidence=IGI

GO:0071472 "cellular response to salt stress" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2076537 SP1L3 "AT3G02180" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 36/85 (42%), Positives = 44/85 (51%)

Query:    16 YLFSDGEAPKPAAKE-GQAQNNAPTQKPAPVA-QPVDIT-------KQLPAGINSTSMNN 66
             YLF  G+    AA   G       T        +P+  T       K+  AG+   S NN
Sbjct:    18 YLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTSAGVRG-SPNN 76

Query:    67 YMRADGQNTGNFITDRPSTKVHAAP 91
             Y R++GQN GNF+TDRPSTKVHAAP
Sbjct:    77 YFRSEGQNCGNFLTDRPSTKVHAAP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180902 SP1L4 "AT5G15600" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/92 (42%), Positives = 47/92 (51%)

Query:    16 YLFSDGEA-PKPA---AKEGQAQNNAPTQ-------KPAPVAQPVDI-----TKQLPAGI 59
             YLF  GE+ PKP    AK G       T        +P              T++  AG+
Sbjct:    18 YLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTTGDKNKTEENSAGV 77

Query:    60 NSTSMNNYMRADGQNTGNFITDRPSTKVHAAP 91
                S NNY R+DGQN GNF+T+RPSTKVHAAP
Sbjct:    78 RG-SPNNYYRSDGQNCGNFLTERPSTKVHAAP 108

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006517 SP1L5 "AT4G23496" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 37/79 (46%), Positives = 43/79 (54%)

Query:    16 YLF-SDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINST--SMNNYMRADG 72
             YLF SD E PK  A        AP  KPAP    VD T++          S NNY R  G
Sbjct:    16 YLFGSDNEIPKTPAPPV-----AP--KPAP-PYGVDSTEEDHEADQKPKISNNNYQRVQG 67

Query:    73 QNTGNFITDRPSTKVHAAP 91
             QN+GNF+TDRP+TKV + P
Sbjct:    68 QNSGNFVTDRPTTKVKSVP 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.124   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      106        78   0.00091  102 3  11 23  0.49    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  448 (48 KB)
  Total size of DFA:  82 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.07u 0.11s 15.18t   Elapsed:  00:00:01
  Total cpu time:  15.08u 0.11s 15.19t   Elapsed:  00:00:01
  Start:  Fri May 10 11:21:24 2013   End:  Fri May 10 11:21:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LE54	SP1L2_ARATH	No assigned EC number	0.7027	0.9905	0.9545	yes	no
Q2QQ99	SP1L3_ORYSJ	No assigned EC number	0.6363	0.7641	0.8019	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0010026002 SubName- Full=Putative uncharacterized protein; (113 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00