Citrus Sinensis ID: 034007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHc
Coil and Loop (DISEMBL)
MARTKHMARRSSRLQAavkatpptsspgtsrqrrseagegtptaqrkrqrlrpGTKALREIRRFQKSVDLLIPRMSFIREVRTityrvappdvnrwtPEALIALQE
Flexible Loop (DISEMBL)
martkhmarrssrlqaavkatpptsspgtsrqrrseagegtptaqrkrqrlrpgtkalreirrfqksvdlliprmsfirevrtityrvappdvnrwtpealialqe
Low Complexity Region (SEG)
MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE
Disordered region (IsUnstruct)
***********************************************************EIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALI****
Disordered Region (DISOPRED)
MARTK**********************************************RPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE
Disordered Region (DISEMBL)
****************************************************PGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE
Disordered Region (DISPRO)
*************************************************RLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIA***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q8RVQ9	178	Histone H3-like centromer	yes	no	0.924	0.550	0.52	8e-20
Q7RXR3	155	Histone H3-like centromer	N/A	no	0.867	0.593	0.430	6e-13
Q59LN9	211	Histone H3-like centromer	N/A	no	0.603	0.303	0.523	2e-10
P41353	136	Histone H3.3 OS=Tetrahyme	N/A	no	0.896	0.698	0.405	3e-09
P15512	136	Histone H3.3 OS=Tetrahyme	N/A	no	0.896	0.698	0.405	3e-09
P69150	136	Histone H3 OS=Tetrahymena	N/A	no	0.896	0.698	0.405	7e-09
P69149	136	Histone H3 OS=Tetrahymena	N/A	no	0.896	0.698	0.405	7e-09
Q22RG7	136	Histone H3.4 OS=Tetrahyme	N/A	no	0.896	0.698	0.396	8e-09
Q7XYZ0	136	Histone H3 OS=Griffithsia	N/A	no	0.896	0.698	0.424	1e-08
O15819	139	Histone H3.3 type a OS=Di	yes	no	0.924	0.705	0.396	2e-08

>sp|Q8RVQ9|HTR12_ARATH Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 9   RRSSRLQAAVKATPPTSSPGTSRQRRSE-AGEGTP-TAQRKRQRLRPGTKALREIRRFQK 66
           RR        + T PT+SP T  +R ++ + +  P  +Q+K  R RPGT AL+EIR FQK
Sbjct: 36  RRGGEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQK 95

Query: 67  SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             +LLIP  SFIREVR+IT+ +APP +NRWT EAL+ALQE
Sbjct: 96  QTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQE 135

Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7RXR3|CENPA_NEUCR Histone H3-like centromeric protein cse-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cse-4 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 15  QAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPR 74
           +AA   TP  + PG  + R S    G P  Q K++R RPGT AL+EIR +Q++ DLL+ +
Sbjct: 17  KAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKRRYRPGTLALKEIRNYQRTTDLLVAK 76

Query: 75  MSFIREVRTITYRVAPPDVN-RWTPEALIALQE 106
           + F R VR I  +  P D   RW  +A++ALQE
Sbjct: 77  LPFARLVREIAMQFRPMDEEMRWQSQAILALQE 109

Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q59LN9|CENPA_CANAL Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CSE4 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 43  TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVN-RWTPEAL 101
           T  R ++R RPGTKALREIR++QKS DLLI ++ F R VR I+     P    RW   A+
Sbjct: 104 TVPRVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAI 163

Query: 102 IALQE 106
           +ALQE
Sbjct: 164 LALQE 168

Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|P41353|H33_TETTS Histone H3.3 OS=Tetrahymena thermophila (strain SB210) GN=HHT3 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+ ++A      P     T   R+S    G     +K  + RPGT ALRE
Sbjct: 1   MARTKQTARKSTGVKA------PRKQLATKAARKSAPVSG---GVKKPHKFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QK+ DLLI ++ F R VR I   +   D+ R+  +A++ALQE
Sbjct: 52  IRKYQKTTDLLIRKLPFQRLVRDIAMEM-KSDI-RFQSQAILALQE 95

Macronuclear replacement variant which replaces conventional H3 in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Functions redundantly to H3.4. H3.3 deposition into chromatin is mainly transcription-associated and DNA replication-independent, but it can also enter a replication-coupled pathway. Although not essential for vegetative growth, minor H3 variants are required for producing viable conjugation progeny by affecting late developmental stages of conjugation.

Tetrahymena thermophila (strain SB210) (taxid: 312017)

>sp|P15512|H33_TETPY Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+ ++A      P     T   R+S    G     +K  + RPGT ALRE
Sbjct: 1   MARTKQTARKSTGVKA------PRKQLATKAARKSAPVSG---GVKKPHKFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QK+ DLLI ++ F R VR I   +   D+ R+  +A++ALQE
Sbjct: 52  IRKYQKTTDLLIRKLPFQRLVRDIAMEM-KNDI-RFQSQAILALQE 95

Macronuclear replacement variant which replaces conventional H3 in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Functions redundantly to H3.4. H3.3 deposition into chromatin is mainly transcription-associated and DNA replication-independent, but it can also enter a replication-coupled pathway. Although not essential for vegetative growth, minor H3 variants are required for producing viable conjugation progeny by affecting late developmental stages of conjugation.

Tetrahymena pyriformis (taxid: 5908)

>sp|P69150|H31_TETTH Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+       A  P     +   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKST------GAKAPRKQLASKAARKSAPATG---GIKKPHRFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QKS DLLI ++ F R VR I +        R+   A++ALQE
Sbjct: 52  IRKYQKSTDLLIRKLPFQRLVRDIAHEFKAE--LRFQSSAVLALQE 95

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. H3 is deposited into chromatin exclusively through a DNA replication-coupled pathway that can be associated with either DNA duplication or DNA repair synthesis during meiotic homologous recombination.

Tetrahymena thermophila (taxid: 5911)

>sp|P69149|H31_TETPY Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+       A  P     +   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKST------GAKAPRKQLASKAARKSAPATG---GIKKPHRFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QKS DLLI ++ F R VR I +        R+   A++ALQE
Sbjct: 52  IRKYQKSTDLLIRKLPFQRLVRDIAHEFKAE--LRFQSSAVLALQE 95

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Tetrahymena pyriformis (taxid: 5908)

>sp|Q22RG7|H34_TETTS Histone H3.4 OS=Tetrahymena thermophila (strain SB210) GN=HHT4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+ ++A      P         R+S    G     +K  + RPGT ALRE
Sbjct: 1   MARTKQTARKSTSIKA------PRKQLAAKAARKSAPISG---GIKKPHKFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QK+ DLLI ++ F R VR I   +   D+ R+  +A++ALQE
Sbjct: 52  IRKYQKTTDLLIRKLPFQRLVRDIAMEM-KSDI-RFQSQAILALQE 95

Macronuclear replacement variant which replaces conventional H3 in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Functions redundantly to H3.3. H3.4 deposition is mainly transcription-associated, DNA replication-independent. Although not essential for vegetative growth, minor H3 variants are required for producing viable conjugation progeny by affecting late developmental stages of conjugation.

Tetrahymena thermophila (strain SB210) (taxid: 312017)

>sp|Q7XYZ0|H3_GRIJA Histone H3 OS=Griffithsia japonica PE=2 SV=3

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRFRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRRFQKS +LL+ ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  IRRFQKSTELLVRKLPFQRLVREIAQDF-KSDL-RFQSSAVLALQE 95

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Griffithsia japonica (taxid: 83288)

>sp|O15819|H33A_DICDI Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+       A  P    G+ +  +      +    +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKST------GAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALRE 54

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QKS DLLI ++ F R VR I       D+ R+   A+ ALQE
Sbjct: 55  IRKYQKSTDLLIRKLPFQRLVREIAQEF-KTDL-RFQSAAIGALQE 98

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
33146144	174	histone H3 like protein [Turritis glabra	1.0	0.609	0.488	2e-20
134152507	175	putative centromeric histone H3-like pro	1.0	0.605	0.469	3e-20
91178263	166	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.638	0.504	4e-20
134152531	180	centromeric histone H3-like protein_1 [L	1.0	0.588	0.445	1e-19
91179092	173	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.612	0.461	2e-19
91178255	172	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.616	0.480	2e-19
91178261	172	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.616	0.480	2e-19
134152513	175	centromeric histone H3-like protein-2 [C	1.0	0.605	0.462	3e-19
91179106	173	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.612	0.461	4e-19
91179090	173	histone H3 [Arabidopsis lyrata subsp. pe	1.0	0.612	0.453	4e-19

>gi|33146144|dbj|BAC79432.1| histone H3 like protein [Turritis glabra]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 25/131 (19%)

Query: 1   MARTKHMARRS-------SRLQAA----------------VKATPPTSSPGTSRQRRSE- 36
           MARTKH A RS       S  QAA                 + T PT+SP T R++R++ 
Sbjct: 1   MARTKHFATRSRPRNQTDSSSQAAGPSTNPTTGGSEGGDAAQQTTPTTSPATGRKKRAKR 60

Query: 37  AGEGTP-TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNR 95
           A +  P  +Q+K  R +PGT ALREIR FQK+ +LLIP  SFIREVR+IT+ +APP ++R
Sbjct: 61  AKQAMPQGSQKKPYRYKPGTIALREIRYFQKNTNLLIPAASFIREVRSITHALAPPQISR 120

Query: 96  WTPEALIALQE 106
           WT EAL+ALQE
Sbjct: 121 WTAEALVALQE 131

Source: Turritis glabra

Species: Turritis glabra

Genus: Turritis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134152507|dbj|BAF49719.1| putative centromeric histone H3-like protein_1 [Arabis hirsuta]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 75/132 (56%), Gaps = 26/132 (19%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRR-SEAGEG----TP------------- 42
           MARTKH ARR      A  ++ P + P T+  RR SE G+     TP             
Sbjct: 1   MARTKHFARRGQNRTDANVSSSPAAGPSTTPARRASEDGDDAQQTTPATSPATGSKNSNG 60

Query: 43  --------TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVN 94
                   ++Q+K  R RPGT ALREIR+FQKS  LLIP  SFIREV+ ITY  APP + 
Sbjct: 61  GAKRTMPQSSQKKPHRYRPGTAALREIRKFQKSTKLLIPAASFIREVKDITYTYAPPQIT 120

Query: 95  RWTPEALIALQE 106
           RWT EAL+A+QE
Sbjct: 121 RWTAEALVAIQE 132

Source: Arabis hirsuta

Species: Arabis hirsuta

Genus: Arabis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91178263|gb|ABE27638.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178271|gb|ABE27642.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MARTKHMARRS------SRLQAA----------VKATPPTSSPGTSRQRRSEAGEGTP-T 43
           MARTKH A +S      S  QAA           + T PT+SP T  +R   A +  P  
Sbjct: 1   MARTKHFATKSRSDANASSSQAAGPTTVRHRWRCQQTNPTTSPATGGRRPRRARQAMPRG 60

Query: 44  AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIA 103
           +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRWT EAL+A
Sbjct: 61  SQKKPYRYKPGTVALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRWTAEALVA 120

Query: 104 LQE 106
           LQE
Sbjct: 121 LQE 123

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134152531|dbj|BAF49731.1| centromeric histone H3-like protein_1 [Lepidium virginicum]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 70/137 (51%), Gaps = 31/137 (22%)

Query: 1   MARTKHMARR---SSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQ------------ 45
           M RTKH   R     R  A V ++ P +   T+R  RS  GE    AQ            
Sbjct: 1   MTRTKHYVSRPQPHHRKDATVSSSSPAAGTSTNRTTRSSEGEAGDNAQQTIPTTSPATNS 60

Query: 46  ----------------RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVA 89
                           +K  R +PGT ALREIR FQKS +LLIP  SFIREVR IT  VA
Sbjct: 61  KKGAKRTKETMPQSSNKKTYRYKPGTVALREIRHFQKSTNLLIPAASFIREVRCITQAVA 120

Query: 90  PPDVNRWTPEALIALQE 106
           PP +NRWT EAL+ALQE
Sbjct: 121 PPQINRWTAEALVALQE 137

Source: Lepidium virginicum

Species: Lepidium virginicum

Genus: Lepidium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91179092|gb|ABE27602.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179096|gb|ABE27604.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179114|gb|ABE27613.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179116|gb|ABE27614.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179118|gb|ABE27615.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179120|gb|ABE27616.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179122|gb|ABE27617.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179124|gb|ABE27618.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179126|gb|ABE27619.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179128|gb|ABE27620.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179138|gb|ABE27625.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179140|gb|ABE27626.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 74/130 (56%), Gaps = 24/130 (18%)

Query: 1   MARTKHMARRS---SRLQAAVKATPPTSSPGTSRQRRSEAGEGT----PT---------- 43
           MARTKH A RS   +R  A   ++       T   R SE G+ T    PT          
Sbjct: 1   MARTKHFATRSGSGNRTDANASSSQAAGPTTTPTTRGSEGGDNTQQTNPTTSRRRGPRRA 60

Query: 44  -------AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRW 96
                  +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRW
Sbjct: 61  RQAMPRGSQKKPYRFKPGTAALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRW 120

Query: 97  TPEALIALQE 106
           T EAL+ALQE
Sbjct: 121 TAEALVALQE 130

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91178255|gb|ABE27634.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178259|gb|ABE27636.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178267|gb|ABE27640.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178277|gb|ABE27645.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178279|gb|ABE27646.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178287|gb|ABE27650.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178289|gb|ABE27651.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 23/129 (17%)

Query: 1   MARTKHMARRS------SRLQAA----------------VKATPPTSSPGTSRQRRSEAG 38
           MARTKH A +S      S  QAA                 + T PT+SP T  +R   A 
Sbjct: 1   MARTKHFATKSRTDANASSSQAAGPTTTPTTRGTEGGDNTQQTNPTTSPATGGRRPRRAR 60

Query: 39  EGTP-TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWT 97
           +  P  +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRWT
Sbjct: 61  QAMPRGSQKKPYRYKPGTVALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRWT 120

Query: 98  PEALIALQE 106
            EAL+ALQE
Sbjct: 121 AEALVALQE 129

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91178261|gb|ABE27637.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178275|gb|ABE27644.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178281|gb|ABE27647.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91178291|gb|ABE27652.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 23/129 (17%)

Query: 1   MARTKHMARRS------SRLQAA----------------VKATPPTSSPGTSRQRRSEAG 38
           MARTKH A +S      S  QAA                 + T PT+SP T  +R   A 
Sbjct: 1   MARTKHFATKSRTDANASSSQAAGPTTTSTTRGTEGGDNTQQTNPTTSPATGGRRPRRAR 60

Query: 39  EGTP-TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWT 97
           +  P  +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRWT
Sbjct: 61  QAMPRGSQKKPYRYKPGTVALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRWT 120

Query: 98  PEALIALQE 106
            EAL+ALQE
Sbjct: 121 AEALVALQE 129

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134152513|dbj|BAF49722.1| centromeric histone H3-like protein-2 [Cardamine flexuosa]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 81/132 (61%), Gaps = 26/132 (19%)

Query: 1   MARTKHMARRS---SRLQAAVKATP---------------------PTSSPGTSRQRRSE 36
           MARTKH A+R+   ++  AA  +TP                     PT+SP TS+++ ++
Sbjct: 1   MARTKHFAKRTRPRNQTDAAGSSTPAAGPSTTTRANQGEEEAQQTNPTTSPATSKKKGAK 60

Query: 37  -AGEGTP-TAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVN 94
            + +  P  +Q K  R RPGT ALREIR FQKS +LLIP  +FIR+VR+IT   APP +N
Sbjct: 61  RSRQAMPKGSQNKPYRYRPGTVALREIRHFQKSTNLLIPAATFIRQVRSITQMYAPPQIN 120

Query: 95  RWTPEALIALQE 106
           RWT EAL+ALQE
Sbjct: 121 RWTAEALVALQE 132

Source: Cardamine flexuosa

Species: Cardamine flexuosa

Genus: Cardamine

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91179106|gb|ABE27609.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 74/130 (56%), Gaps = 24/130 (18%)

Query: 1   MARTKHMARRS---SRLQAAVKATPPTSSPGTSRQRRSEAGEGT----PT---------- 43
           MARTKH A RS   +R  A   ++       T   R SE G+ T    PT          
Sbjct: 1   MARTKHFATRSGSGNRTDANASSSQAAGPTTTPTTRGSEGGDNTQQTNPTTSRRRGPRRA 60

Query: 44  -------AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRW 96
                  +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRW
Sbjct: 61  RQAMPRGSQKKPYRYKPGTVALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRW 120

Query: 97  TPEALIALQE 106
           T EAL+ALQE
Sbjct: 121 TAEALVALQE 130

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91179090|gb|ABE27601.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179094|gb|ABE27603.1| histone H3 [Arabidopsis lyrata subsp. petraea] gi|91179112|gb|ABE27612.1| histone H3 [Arabidopsis lyrata subsp. petraea]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 74/130 (56%), Gaps = 24/130 (18%)

Query: 1   MARTKHMARRS---SRLQAAVKATPPTSSPGTSRQRRSEAGEGT----PT---------- 43
           MARTKH A R+   +R  A   ++       T   R SE G+ T    PT          
Sbjct: 1   MARTKHFATRTGSGNRTDANASSSQAAGPTTTPTTRGSEGGDNTQQTNPTTSRRRGPRRA 60

Query: 44  -------AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRW 96
                  +Q+K  R +PGT ALREIR FQK  +LLIP  SFIR+VR+IT+ +APP +NRW
Sbjct: 61  RQAMPRGSQKKPYRFKPGTAALREIRHFQKQTNLLIPAASFIRQVRSITHALAPPQINRW 120

Query: 97  TPEALIALQE 106
           T EAL+ALQE
Sbjct: 121 TAEALVALQE 130

Source: Arabidopsis lyrata subsp. petraea

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2035252	178	HTR12 [Arabidopsis thaliana (t	0.811	0.483	0.568	8e-21
ASPGD|ASPL0000001462	191	AN6554 [Emericella nidulans (t	0.858	0.476	0.389	6.4e-12
CGD|CAL0006066	211	CSE4 [Candida albicans (taxid:	0.783	0.393	0.448	8.2e-12
UNIPROTKB|Q59LN9	211	CSE4 "Histone H3-like centrome	0.783	0.393	0.448	8.2e-12
WB|WBGene00001876	136	his-2 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10
WB|WBGene00001880	136	his-6 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10
WB|WBGene00001883	136	his-9 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10
WB|WBGene00001887	136	his-13 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10
WB|WBGene00001891	136	his-17 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10
WB|WBGene00001899	136	his-25 [Caenorhabditis elegans	0.896	0.698	0.433	2e-10

TAIR|locus:2035252 HTR12 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 50/88 (56%), Positives = 64/88 (72%)

Query:    21 TPPTSSPGTSRQRRSEAG-EGTPT-AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFI 78
             T PT+SP T  +R ++   +  P  +Q+K  R RPGT AL+EIR FQK  +LLIP  SFI
Sbjct:    48 TNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFI 107

Query:    79 REVRTITYRVAPPDVNRWTPEALIALQE 106
             REVR+IT+ +APP +NRWT EAL+ALQE
Sbjct:   108 REVRSITHMLAPPQINRWTAEALVALQE 135

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IEP

GO:0000785 "chromatin" evidence=IDA

GO:0007126 "meiosis" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0051307 "meiotic chromosome separation" evidence=IMP

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

ASPGD|ASPL0000001462 AN6554 [Emericella nidulans (taxid:162425)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 37/95 (38%), Positives = 55/95 (57%)

Query:    16 AAVKATPPTSSPGTS-RQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPR 74
             A+V  +  +  P T+    +S    G PT + +R R +PGT AL+EIR++Q+S DLL+ +
Sbjct:    53 ASVSKSKGSKRPPTAPSDDQSSIQPGDPTPKGRRHRYKPGTVALKEIRKYQRSYDLLLRK 112

Query:    75 MSFIREVRTITYRVAPPDVN---RWTPEALIALQE 106
             + F R VR +   + P DV    RW   A+ ALQE
Sbjct:   113 LPFARLVREVALDILPADVGSELRWQSHAIQALQE 147

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0034501 "protein localization to kinetochore" evidence=IEA

GO:0031508 "centromeric heterochromatin assembly" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0043505 "centromere-specific nucleosome" evidence=IEA

GO:0000939 "condensed chromosome inner kinetochore" evidence=IEA

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IEA

CGD|CAL0006066 CSE4 [Candida albicans (taxid:5476)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 39/87 (44%), Positives = 50/87 (57%)

Query:    21 TPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE 80
             T  +S P  +   R E     P   R ++R RPGTKALREIR++QKS DLLI ++ F R 
Sbjct:    85 TLASSLPRRTTTTRPEVNRTVP---RVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARL 141

Query:    81 VRTITYRVAPPDVN-RWTPEALIALQE 106
             VR I+     P    RW   A++ALQE
Sbjct:   142 VREISLDFVGPSYGLRWQSNAILALQE 168

GO:0000776 "kinetochore" evidence=IDA

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0019237 "centromeric DNA binding" evidence=IDA

GO:0043505 "centromere-specific nucleosome" evidence=IDA

GO:0005727 "extrachromosomal circular DNA" evidence=IEA

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IEA

GO:0000788 "nuclear nucleosome" evidence=IEA

GO:0030543 "2-micrometer plasmid partitioning" evidence=IEA

UNIPROTKB|Q59LN9 CSE4 "Histone H3-like centromeric protein CSE4" [Candida albicans SC5314 (taxid:237561)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 39/87 (44%), Positives = 50/87 (57%)

Query:    21 TPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE 80
             T  +S P  +   R E     P   R ++R RPGTKALREIR++QKS DLLI ++ F R 
Sbjct:    85 TLASSLPRRTTTTRPEVNRTVP---RVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARL 141

Query:    81 VRTITYRVAPPDVN-RWTPEALIALQE 106
             VR I+     P    RW   A++ALQE
Sbjct:   142 VREISLDFVGPSYGLRWQSNAILALQE 168

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0019237 "centromeric DNA binding" evidence=IDA

GO:0043505 "centromere-specific nucleosome" evidence=IDA

WB|WBGene00001876 his-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

WB|WBGene00001880 his-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

WB|WBGene00001883 his-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

WB|WBGene00001887 his-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

WB|WBGene00001891 his-17 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

WB|WBGene00001899 his-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 46/106 (43%), Positives = 57/106 (53%)

Query:     1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
             MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct:     1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPASG---GVKKPHRYRPGTVALRE 51

Query:    61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             IRR+QKS +LLI R  F R VR I       D+ R+   A++ALQE
Sbjct:    52 IRRYQKSTELLIRRAPFQRLVREIAQDFKT-DL-RFQSSAVMALQE 95

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HTR12	HTR12; DNA binding; Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. ; Histone H3-like variant which exclusively replaces conventional H3 in the nucleosome core of centromeric chromatin at the inner plate of the kinetochore. Required for recruitment and assembly of kinetochore proteins, mitotic progression and chromosome segregation. May serve as an epigenetic mark that propagates centromere identity through replication and cell division (By similarity) (178 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G25980	mitotic spindle checkpoint protein, putative (MAD2); mitotic spindle checkpoint protein, putati [...] (209 aa)				•		•	•		0.967
	MIS12	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE); encodes a homologue of the yeast (S. pombe) [...] (285 aa)							•		0.966
	VIM1	VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated D [...] (645 aa)				•	•		•		0.946
	AT3G22790	kinase interacting family protein; kinase interacting family protein; FUNCTIONS IN- molecular_f [...] (1694 aa)							•		0.925
	ATZW10	ATZW10; homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome [...] (742 aa)						•			0.899
	CENP-C	CENP-C (CENTROMERE PROTEIN C); Encodes a homologue of the human centromeric protein C (CENP-C). [...] (705 aa)							•		0.879
	AT1G10780	F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (418 aa)				•			•		0.739
	AT5G35065	transposable element gene; copia-like retrotransposon family, has a 5.3e-33 P-value blast match [...] (658 aa)							•		0.677
	AT2G33000	ubiquitin-associated (UBA)/TS-N domain-containing protein-related; ubiquitin-associated (UBA)/T [...] (508 aa)							•		0.677
	ATCEN2	ATCEN2 (CENTRIN2); calcium ion binding; CENTRIN2 (ATCEN2); FUNCTIONS IN- calcium ion binding; I [...] (169 aa)							•		0.657

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
smart00428	105	smart00428, H3, Histone H3	4e-13
PLN00161	135	PLN00161, PLN00161, histone H3; Provisional	2e-12
PTZ00018	136	PTZ00018, PTZ00018, histone H3; Provisional	2e-10
PLN00160	97	PLN00160, PLN00160, histone H3; Provisional	2e-08
PLN00121	136	PLN00121, PLN00121, histone H3; Provisional	1e-07

>gnl|CDD|128705 smart00428, H3, Histone H3

 Score = 59.8 bits (145), Expect = 4e-13
 Identities = 29/61 (47%), Positives = 37/61 (60%)

Query: 46  RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQ 105
            K +R RPG  ALREIR++QKS DLLI +  F R VR I  +       R+   A++ALQ
Sbjct: 4   TKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQ 63

Query: 106 E 106
           E
Sbjct: 64  E 64

Length = 105

>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional

 Score = 58.5 bits (141), Expect = 2e-12
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 31  RQRRSEAGEGTPTAQ-RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVA 89
           ++ + EA   T     +K  R RPGT ALREIR++QKS +LLI ++ F R VR I+  + 
Sbjct: 14  KKPQKEASGVTRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73

Query: 90  PPDVNRWTPEALIALQE 106
                RWT EAL+ALQE
Sbjct: 74  REPF-RWTAEALLALQE 89

Length = 135

>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     +   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLASKAARKSAPVTGG---IKKPHRYRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I          R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSSAVLALQE 95

Length = 136

>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 51  LRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           +RPG KAL+EI+ +QKS DLLI R+ F R VR I   ++  +  RW   A++ALQE
Sbjct: 1   MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMS-REAYRWQGSAILALQE 55

Length = 97

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IR++QKS +LLI ++ F R VR I          R+   A++ALQE
Sbjct: 52  IRKYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSSAVLALQE 95

Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PTZ00018	136	histone H3; Provisional	100.0
PLN00161	135	histone H3; Provisional	100.0
PLN00121	136	histone H3; Provisional	100.0
KOG1745	137	consensus Histones H3 and H4 [Chromatin structure	99.97
smart00428	105	H3 Histone H3.	99.96
PLN00160	97	histone H3; Provisional	99.93
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	99.08
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	97.91

>PTZ00018 histone H3; Provisional

Probab=100.00  E-value=2.6e-36  Score=218.74  Aligned_cols=95  Identities=43%  Similarity=0.563  Sum_probs=81.9

Q ss_pred             CCcccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHHH
Q 034007            1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE   80 (106)
Q Consensus         1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RL   80 (106)
                      ||||||++++++++++|+++++        .+...++.+.. ++.++++||+||++||+|||+||+||+|||+|+||+||
T Consensus         1 MaRtk~~~~k~~~~~~prk~~~--------~~~~~~~~~~~-~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RL   71 (136)
T PTZ00018          1 MARTKQTARKSTGGKAPRKQLA--------SKAARKSAPVT-GGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL   71 (136)
T ss_pred             CCCCCcCccCCCCCCCCccccc--------ccccccCCCCC-CCCCCCcccCCchhHHHHHHHHcccchhccccccHHHH
Confidence            9999999999999998888765        22222222222 67889999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCcccccHHHHhhccC
Q 034007           81 VRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        81 VreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||||+++|  .+++|||++||+||||
T Consensus        72 VREI~~~~--~~~~rf~~~al~aLQe   95 (136)
T PTZ00018         72 VREIAQDF--KTDLRFQSSAVLALQE   95 (136)
T ss_pred             HHHHHHHc--CCcceeeHHHHHHHHH
Confidence            99999994  5689999999999997

>PLN00161 histone H3; Provisional

Probab=100.00  E-value=3.8e-36  Score=217.55  Aligned_cols=89  Identities=43%  Similarity=0.609  Sum_probs=77.4

Q ss_pred             CCcccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHHH
Q 034007            1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE   80 (106)
Q Consensus         1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RL   80 (106)
                      ||||||+ +++++|+.|.+++.        .    +   ..++++++++||+||+|||+|||+||+||+|||||+||+||
T Consensus         1 mar~k~~-~~~~~~~~~~~~~~--------~----~---~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RL   64 (135)
T PLN00161          1 MARRLQG-KRFRKGKKPQKEAS--------G----V---TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARL   64 (135)
T ss_pred             CCccccc-ccccCCCCCcccCC--------C----C---CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHH
Confidence            9999999 77778877766554        1    0   11178899999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCcccccHHHHhhccC
Q 034007           81 VRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        81 VreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||||+++| ..+++|||++||+||||
T Consensus        65 VREI~~~~-~~~~~Rfq~~Al~ALQE   89 (135)
T PLN00161         65 VREISNEM-LREPFRWTAEALLALQE   89 (135)
T ss_pred             HHHHHHhc-CCCCcEeeHHHHHHHHH
Confidence            99999996 34689999999999997

>PLN00121 histone H3; Provisional

Probab=100.00  E-value=3.9e-36  Score=217.82  Aligned_cols=95  Identities=42%  Similarity=0.571  Sum_probs=82.2

Q ss_pred             CCcccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHHH
Q 034007            1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE   80 (106)
Q Consensus         1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RL   80 (106)
                      ||||||++++++++++|+++++        .+...++.+.. ++.++++||+||++||+|||+||+||+|||+|+||+||
T Consensus         1 MaRtk~~~~k~~~~~~p~~~~~--------~~~~~~~~~~~-~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RL   71 (136)
T PLN00121          1 MARTKQTARKSTGGKAPRKQLA--------TKAARKSAPAT-GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRL   71 (136)
T ss_pred             CCCCCcCccCCCCCCCCccccc--------ccccccCCCCC-CCCCCCcccCchhHHHHHHHHhccccccccccccHHHH
Confidence            9999999999999999888765        22222222222 67899999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCcccccHHHHhhccC
Q 034007           81 VRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        81 VreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||||+++|  .+++|||++||+||||
T Consensus        72 VREI~~~~--~~~~Rf~~~Al~ALQe   95 (136)
T PLN00121         72 VREIAQDF--KTDLRFQSSAVLALQE   95 (136)
T ss_pred             HHHHHHHh--CccceeeHHHHHHHHH
Confidence            99999994  5789999999999997

>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]

Probab=99.97  E-value=4.1e-31  Score=191.66  Aligned_cols=95  Identities=43%  Similarity=0.543  Sum_probs=82.1

Q ss_pred             CCcccccccccCCcccccccCCCCCCCCccchhhhhc-CCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHH
Q 034007            1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEA-GEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIR   79 (106)
Q Consensus         1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~-~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~R   79 (106)
                      |+|+++++++++++++++++.+        .+..... .+.. +.+++.+||+||+++|+|||+||+||||||+|+||+|
T Consensus         1 m~r~~~t~~k~~~~~~~r~~~a--------~~~~~~~~~~~~-~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqR   71 (137)
T KOG1745|consen    1 MARTKQTARKSTGGKAPRKQLA--------GKAARKSAAPRT-GRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQR   71 (137)
T ss_pred             CCCCCcccccccCCCCCccccc--------cccccccccccc-cccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHH
Confidence            8999999999999999988776        2222221 1112 5778899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           80 EVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        80 LVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      |||||+++  |..|+|||+.||.||||
T Consensus        72 lvrei~q~--f~~dLrfqs~Ai~ALQe   96 (137)
T KOG1745|consen   72 LVREIAQD--FKTDLRFQSSAIAALQE   96 (137)
T ss_pred             HhHHHHhc--ccccceehHHHHHHHHH
Confidence            99999999  57899999999999997

>smart00428 H3 Histone H3

Probab=99.96  E-value=1.6e-29  Score=176.46  Aligned_cols=63  Identities=46%  Similarity=0.671  Sum_probs=58.4

Q ss_pred             ccccccccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           44 AQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        44 ~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ++++++||+||++||+|||+||+||+|||||+||+||||||+++|....++|||++||+||||
T Consensus         2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQe   64 (105)
T smart00428        2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQE   64 (105)
T ss_pred             CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHH
Confidence            578899999999999999999999999999999999999999996423489999999999997

>PLN00160 histone H3; Provisional

Probab=99.93  E-value=2.5e-27  Score=163.59  Aligned_cols=55  Identities=51%  Similarity=0.851  Sum_probs=52.1

Q ss_pred             cCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           51 LRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        51 ~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      |+||++||+|||+||+||+|||||+||+||||||+++| ..+++|||++||+||||
T Consensus         1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~-~~~~~Rfq~~Al~ALQe   55 (97)
T PLN00160          1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEM-SREAYRWQGSAILALQE   55 (97)
T ss_pred             CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHc-CCCCcEeeHHHHHHHHH
Confidence            78999999999999999999999999999999999995 35679999999999997

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=99.08  E-value=5.1e-11  Score=81.59  Aligned_cols=47  Identities=43%  Similarity=0.675  Sum_probs=44.2

Q ss_pred             CCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           53 PGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        53 pgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||.++++|||+||++++++||++||+|++|+...+       ||+.+|+++|||
T Consensus         1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-------Rvs~~A~~~l~~   47 (91)
T COG2036           1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-------RVSSSAIEELQE   47 (91)
T ss_pred             CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-------HhhHHHHHHHHH
Confidence            68899999999999999999999999999998865       999999999986

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=97.91  E-value=3.6e-06  Score=53.68  Aligned_cols=38  Identities=37%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             ccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           67 SVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        67 st~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      +++++|+++||.|+++||..++.  ..+||+++|+.+||+
T Consensus         1 ~~~~~~~~~~~~r~~r~i~~~~~--~~~ris~~a~~~L~~   38 (75)
T PF00125_consen    1 RTRRLIPKFPFSRLLREIGEEIL--SKYRISSEALVALQS   38 (75)
T ss_dssp             HHSHSSSHHHHHHHHHHHHHTTS--SSSEECHHHHHHHHH
T ss_pred             CcccccCceEEeeeeehhhcccc--cccccccccchhhhh
Confidence            46789999999999999999953  348999999999874

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
3afa_A	139	The Human Nucleosome Structure Length = 139		5e-09
3azh_A	139	Crystal Structure Of Human Nucleosome Core Particle		5e-09
3azg_A	139	Crystal Structure Of Human Nucleosome Core Particle		5e-09
2cv5_A	136	Crystal Structure Of Human Nucleosome Core Particle		5e-09
3lel_A	136	Structural Insight Into The Sequence-Dependence Of		5e-09
3av1_A	139	The Human Nucleosome Structure Containing The Histo		5e-09
2hio_C	136	Histone Octamer (Chicken), Chromosomal Protein Leng		5e-09
3azf_A	139	Crystal Structure Of Human Nucleosome Core Particle		6e-09
1f66_A	136	2.6 A Crystal Structure Of A Nucleosome Core Partic		6e-09
3aze_A	139	Crystal Structure Of Human Nucleosome Core Particle		7e-09
4h9s_A	135	Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13		8e-09
3ayw_A	139	Crystal Structure Of Human Nucleosome Core Particle		1e-08
3a6n_A	139	The Nucleosome Containing A Testis-Specific Histone		2e-08
1p3b_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
1p3k_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
1p3a_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
4hga_B	136	Structure Of The Variant Histone H3.3-H4 Heterodime		2e-08
1p34_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
3av2_A	139	The Human Nucleosome Structure Containing The Histo		2e-08
1p3l_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
1p3m_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-08
1zla_A	135	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		3e-08
2io5_B	135	Crystal Structure Of The Cia- Histone H3-H4 Complex		3e-08
1kx3_A	135	X-Ray Structure Of The Nucleosome Core Particle, Nc		3e-08
3c1c_A	135	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		3e-08
4h9o_A	135	Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length		3e-08
3kxb_A	135	Structural Characterization Of H3k56q Nucleosomes A		8e-08
4h9n_A	135	Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13		1e-07
1id3_A	135	Crystal Structure Of The Yeast Nucleosome Core Part		2e-07
1m18_A	135	Ligand Binding Alters The Structure And Dynamics Of		2e-07
1aoi_A	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		4e-07
4h9p_A	135	Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length		6e-07
3kwq_A	98	Structural Characterization Of H3k56q Nucleosomes A		3e-06
2yfv_A	100	The Heterotrimeric Complex Of Kluyveromyces Lactis		5e-06
1hio_C	93	Histone Octamer (Chicken), Chromosomal Protein, Alp		1e-05
2yfw_A	92	Heterotetramer Structure Of Kluyveromyces Lactis Cs		6e-05
3an2_A	143	The Structure Of The Centromeric Nucleosome Contain		3e-04
3r45_A	156	Structure Of A Cenp-A-Histone H4 Heterodimer In Com		3e-04
3nqu_A	140	Crystal Structure Of Partially Trypsinized (Cenp-AH		3e-04

>pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95

>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95

>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95

>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-QTDL-RFQSSAVMALQE 98

>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATGEV---KKPHRYRPGTVALRE 51
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95

>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRQLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ RW   A+ ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREICQDF-KTDL-RWQSAAIGALQE 94

>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+Q+S +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 55  IRRYQQSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKVARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R +R I       D+ R+   A++ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLMREIAQDF-KTDL-RFQSSAVMALQE 98

>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 51
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A+ ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 95

>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALRE
Sbjct: 4   MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 54
Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I       D+ R+   A+ ALQE
Sbjct: 55  IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 98

>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T        GE      +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDFX-TDL-RFQSSAVMALQE 94

>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIMALQE 94

>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+Q+S +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 52  RRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
           ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1   ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RR+QKS +LLI ++ F R VR I       D+ R+   A+ ALQE
Sbjct: 52  RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 94

>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q A KA    S+P T                +K  R +PGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLASKAARK-SAPSTG-------------GVKKPHRYKPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRRFQKS +LLI ++ F R VR I       D+ R+   A+ ALQE
Sbjct: 47  ALREIRRFQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAIGALQE 94

>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 21/110 (19%)
Query: 2   ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
           ARTK  AR+S+     R Q   KA     +P T                +K  R RPGT 
Sbjct: 1   ARTKQTARKSTGGKAPRKQLVTKAAKK-CAPATG-------------GVKKPHRYRPGTV 46
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 47  ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94

>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 46  RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQ 105
           +K  R RPGT ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQ
Sbjct: 17  KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQ 74
Query: 106 E 106
           E
Sbjct: 75  E 75

>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 2  ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
          ARTK  AR+S+  +A      P     T   R+S    G     +K  R RPGT ALREI
Sbjct: 1  ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTI 84
          RR+QKS +LLI ++ F R VR I
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREI 74

>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 49  QRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
            R RPGT ALREIRR+Q+S +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 2   HRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 57

>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 50  RLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRV-APPDVNRWTPEALIALQE 106
           R +P   AL EIR++Q+S DLLI RM F R V+ +T +     +  RW   A++ALQE
Sbjct: 6   RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE 63

>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 53  PGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           PGT ALREIRR+QKS +LLI ++ F R VR I       D+ R+   A++ALQE
Sbjct: 1   PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 52

>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 57  ALREIRRFQKSVDLLIPRMSFIREVRTITYRV-APPDVNRWTPEALIALQE 106
           AL EIR++Q+S DLLI RM F R V+ +T +     +  RW   A++ALQE
Sbjct: 1   ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE 51

>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58  LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
           L+EIR+ QKS  LLI ++ F R  R I  +     D N W  +AL+ALQE
Sbjct: 51  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 99

>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58  LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
           L+EIR+ QKS  LLI ++ F R  R I  +     D N W  +AL+ALQE
Sbjct: 64  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 112

>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58  LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
           L+EIR+ QKS  LLI ++ F R  R I  +     D N W  +AL+ALQE
Sbjct: 48  LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	4e-09
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	8e-06
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	3e-05
3r45_A	156	Histone H3-like centromeric protein A; histone fol	9e-05

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100

 Score = 49.0 bits (116), Expect = 4e-09
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 45  QRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIA 103
           + +  R +P   AL EIR++Q+S DLLI RM F R V+ +T +     +  RW   A++A
Sbjct: 1   KARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMA 60

Query: 104 LQE 106
           LQE
Sbjct: 61  LQE 63

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 8   ARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKS 67
            RRS + +A  + +P  +      +R      G        Q  R     L+EIR+ QKS
Sbjct: 4   RRRSRKPEAPRRRSPSPTPTPGPSRR------GPSLGASSHQHSRRRQGWLKEIRKLQKS 57

Query: 68  VDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
             LLI ++ F R  R I  +        W  +AL+ALQE
Sbjct: 58  THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE 96

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 1   MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
           MARTK  AR+S         T   +       + +          +K  R RPGT ALRE
Sbjct: 1   MARTKQTARKS---------TGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALRE 51

Query: 61  IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           IRR+QKS +LLI ++ F R VR I          R+   A++ALQE
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSSAVMALQE 95

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156

 Score = 38.4 bits (88), Expect = 9e-05
 Identities = 26/105 (24%), Positives = 37/105 (35%)

Query: 2   ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
                        + + K   P     +       +  G        Q  R     L+EI
Sbjct: 8   HHHSQDPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEI 67

Query: 62  RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           R+ QKS  LLI ++ F R  R I  +        W  +AL+ALQE
Sbjct: 68  RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	100.0
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	99.95
3r45_A	156	Histone H3-like centromeric protein A; histone fol	99.93
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	99.93
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	99.48
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	99.43
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	99.38
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	99.33
2r10_A	361	Chromatin structure-remodeling complex protein RSC	98.68
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	97.64
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	97.14
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	96.38
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	95.23
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	94.51
3avr_B	26	Histone H3; cupin superfamily, TRI/dimethyllysine	81.71

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=100.00  E-value=2.7e-41  Score=243.73  Aligned_cols=95  Identities=43%  Similarity=0.577  Sum_probs=52.1

Q ss_pred             CCcccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHHH
Q 034007            1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE   80 (106)
Q Consensus         1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RL   80 (106)
                      ||||||+|+|||||++|+++++        +|+++++.|++ ++++++|||+||+++|+|||+||+||+||||++||+||
T Consensus         1 MARtk~tarkstggkaprk~l~--------~k~a~k~~p~~-~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RL   71 (136)
T 1tzy_C            1 MARTKQTARKSTGGKAPRKQLA--------TKAARKSAPAT-GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL   71 (136)
T ss_dssp             --------------------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHH
T ss_pred             CCCCccccccCCCCCCCCcccc--------ccccccCCCCC-CCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHH
Confidence            9999999999999999999987        56566655554 88999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCcccccHHHHhhccC
Q 034007           81 VRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        81 VreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||||+++|  ..++|||++||+||||
T Consensus        72 VREI~~~~--~~~~R~q~~Al~aLQe   95 (136)
T 1tzy_C           72 VREIAQDF--KTDLRFQSSAVMALQE   95 (136)
T ss_dssp             HHHHHHHH--CTTCEECHHHHHHHHH
T ss_pred             HHHHHHHh--hhhhcccHHHHHHHHH
Confidence            99999995  4689999999999997

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=99.95  E-value=1.6e-29  Score=174.18  Aligned_cols=61  Identities=43%  Similarity=0.700  Sum_probs=29.4

Q ss_pred             ccccccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007           46 RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE  106 (106)
Q Consensus        46 kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE  106 (106)
                      +++|||+||++||+|||+||+||+|||||+||+||||||+++|.. ..++|||++||+||||
T Consensus         2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQe   63 (100)
T 2yfv_A            2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE   63 (100)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHH
T ss_pred             CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHH
Confidence            578999999999999999999999999999999999999999531 1389999999999997

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=99.93  E-value=7.5e-28  Score=176.78  Aligned_cols=73  Identities=37%  Similarity=0.514  Sum_probs=34.8

Q ss_pred             chhhhhcCCCCCCccccc-cccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           31 RQRRSEAGEGTPTAQRKR-QRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        31 ~k~~~~~~~~~~~~~kk~-~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      +++++++++++ |+++++ +||+||+  |+|||+||+||+|||+|+||+||||||+++|....++|||++||+||||
T Consensus        39 ~~aa~ksap~~-g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQE  112 (156)
T 3r45_A           39 TPGPSRRGPSL-GASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE  112 (156)
T ss_dssp             ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHH
T ss_pred             CCCCCCCCCCC-CCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHH
Confidence            45555566666 555544 8999998  9999999999999999999999999999996433689999999999997

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=99.93  E-value=1e-27  Score=173.53  Aligned_cols=72  Identities=38%  Similarity=0.522  Sum_probs=34.9

Q ss_pred             hhhhhcCCCCCCccc-cccccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           32 QRRSEAGEGTPTAQR-KRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        32 k~~~~~~~~~~~~~k-k~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ++++++++++ |+++ +++||+||+  |+|||+||+||+|||+|+||+||||||+++|....++|||++||+||||
T Consensus        24 ~aa~~~~~~~-g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQE   96 (140)
T 3nqu_A           24 PGPSRRGPSL-GASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE   96 (140)
T ss_dssp             --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHH
T ss_pred             CCCCCCCCCC-CCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHH
Confidence            3345555555 5555 455999998  9999999999999999999999999999996434689999999999997

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=99.48  E-value=6.3e-15  Score=97.12  Aligned_cols=36  Identities=36%  Similarity=0.412  Sum_probs=32.9

Q ss_pred             ccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        69 ~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      +|||||+||+||||||+++  +++++|||++||+||||
T Consensus         1 ~lli~k~PF~RLVRei~~~--~~~~~R~q~~Al~aLQe   36 (77)
T 2hue_B            1 MALIRKLPFQRLVREIAQD--FKTDLRFQSSAVMALQE   36 (77)
T ss_dssp             -CCSCHHHHHHHHHHHHHT--TCSSCEECHHHHHHHHH
T ss_pred             CCccccchHHHHHHHHHHH--cCccccccHHHHHHHHH
Confidence            5899999999999999999  45789999999999997

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=99.43  E-value=1.5e-14  Score=96.37  Aligned_cols=37  Identities=38%  Similarity=0.556  Sum_probs=33.4

Q ss_pred             cccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           70 LLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        70 lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      |||||+||+||||||+++|....++|||++||.||||
T Consensus         2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQe   38 (82)
T 3nqj_A            2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE   38 (82)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHH
Confidence            7999999999999999996333689999999999997

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=9.5e-14  Score=98.23  Aligned_cols=36  Identities=36%  Similarity=0.594  Sum_probs=31.9

Q ss_pred             ccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007           71 LIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE  106 (106)
Q Consensus        71 LI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE  106 (106)
                      ||||+||+||||||+++|.. ..++|||++||.||||
T Consensus         1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQe   37 (121)
T 2ly8_A            1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQE   37 (121)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Confidence            79999999999999999632 2389999999999997

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=2.3e-13  Score=105.24  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=31.9

Q ss_pred             ccccccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007           67 SVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE  106 (106)
Q Consensus        67 st~lLI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE  106 (106)
                      .-.|||||+||+||||||+++|.. ..++|||++||.||||
T Consensus         7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQE   47 (235)
T 2l5a_A            7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQE   47 (235)
T ss_dssp             ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHH
T ss_pred             cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHH
Confidence            346999999999999999999531 1389999999999997

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=98.68  E-value=1.9e-09  Score=86.43  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=12.8

Q ss_pred             cccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHH
Q 034007            3 RTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI   61 (106)
Q Consensus         3 RtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEI   61 (106)
                      ||||+|+|||||++|+++++        .|+++++.+.. ++++++|||+||++|+.|.
T Consensus         3 ~tk~tarkstggkaprk~~~--------~k~~rk~~~~~-~~~kkp~R~rPGt~a~~e~   52 (361)
T 2r10_A            3 DPFTTARKSTGGKAPRKGGM--------VVKKRKLATEA-GGSDERPKYLPGKHPKNQE   52 (361)
T ss_dssp             ---------------------------------------------CCSSCCSCCBCCCS
T ss_pred             cccccccCCCCCCCCCcccc--------ccccCCCCCCC-CCCCCCcccCCCccccccc
Confidence            89999999999999999886        45555444433 7889999999999998875

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=97.14  E-value=8.2e-05  Score=46.28  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=25.2

Q ss_pred             cccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        72 I~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||++||+|||+++  +     +.||+++|+.+|||
T Consensus         3 lP~a~v~Ri~k~~--~-----~~ris~~A~~~l~~   30 (68)
T 1b67_A            3 LPIAPIGRIIKNA--G-----AERVSDDARIALAK   30 (68)
T ss_dssp             SCHHHHHHHHHHT--T-----CSEECHHHHHHHHH
T ss_pred             CCccHHHHHHhcC--C-----cccCCHHHHHHHHH
Confidence            7999999999998  2     57999999999985

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=96.38  E-value=0.00061  Score=44.82  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             cccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           66 KSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        66 kst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ++++++||++++.|+++++..+     +.||+.+|+.+|||
T Consensus         3 ~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~   38 (93)
T 1n1j_A            3 REQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQE   38 (93)
T ss_dssp             ----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHH
T ss_pred             CcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHH
Confidence            4678999999999999998543     57999999999885

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=95.23  E-value=0.004  Score=38.84  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=25.1

Q ss_pred             ccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        71 LI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      .||+.||.||+|++       ...||+.+|+++|||
T Consensus         6 ~lp~a~v~Rl~r~~-------g~~ris~~a~~~l~e   34 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA-------GAERVSEQAAKVLAE   34 (70)
T ss_dssp             CSCHHHHHHHHHHT-------TCSEECHHHHHHHHH
T ss_pred             cCChHHHHHHHHHc-------CcceeCHHHHHHHHH
Confidence            48999999999985       247999999999986

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=94.51  E-value=0.0047  Score=45.15  Aligned_cols=20  Identities=45%  Similarity=0.424  Sum_probs=11.5

Q ss_pred             CcccccccccCCcccccccC
Q 034007            2 ARTKHMARRSSRLQAAVKAT   21 (106)
Q Consensus         2 ARtK~ta~kst~~k~~~k~~   21 (106)
                      |||||+|||||++|++.+|+
T Consensus         1 ~~~~~~~r~s~~~K~~~~~~   20 (159)
T 3a1b_A            1 ARTKQTARKSTGGKAPRKQL   20 (159)
T ss_dssp             CEEEECCCC-------CHHH
T ss_pred             CccccccccccCCCcchHHH
Confidence            89999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1tzyc_	95	a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),	3e-14

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score = 60.6 bits (147), Expect = 3e-14
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 52  RPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
           RPGT ALREIRR+QKS +LLI ++ F R VR I          R+   A++ALQE
Sbjct: 2   RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD--LRFQSSAVMALQE 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	99.92

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=99.92  E-value=1.8e-27  Score=160.94  Aligned_cols=54  Identities=52%  Similarity=0.742  Sum_probs=51.8

Q ss_pred             cCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007           51 LRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE  106 (106)
Q Consensus        51 ~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE  106 (106)
                      ||||++||+|||+||+||+|||||+||+||||||+++|  .+++|||++||+||||
T Consensus         1 ~rpGt~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~--~~~~r~~~~Al~aLQe   54 (95)
T d1tzyc_           1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQE   54 (95)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHH--CTTCEECHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhCCcccccccccHHHHHHHHHHhc--CCCCEeeHHHHHHHHH
Confidence            89999999999999999999999999999999999995  5689999999999997