Citrus Sinensis ID: 034019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccccccccEEEEccccccHHHHHHHHHHHcccccEEEEEccccccccccEEEEEEcccccccccccHHHHHHHHHccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccccccEEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccEEEEEccccEccccHHHHHHHHHHHHHHccccccccEEEc
Coil and Loop (DISEMBL)
MAKKLVQYSVVDAftdsafkgnpaaVCLLEEDRDEEWLQAVASEFNIsqtcyltrltaadspnprfrlrwftpvaevSFSFYNYKLWMKLFGSVlelddlsffmgf
Flexible Loop (DISEMBL)
MAKKLVQYSVVdaftdsafkgnPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLtaadspnprfRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Low Complexity Region (SEG)
MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Disordered region (IsUnstruct)
****LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFM**
Disordered Region (DISOPRED)
****LVQ*SVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDD*SFFMGF
Disordered Region (DISEMBL)
MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Disordered Region (DISPRO)
****LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9DCG6	288	Phenazine biosynthesis-li	yes	no	0.641	0.236	0.528	1e-14
Q9KG32	265	Uncharacterized isomerase	yes	no	0.603	0.241	0.528	1e-13
Q9CXN7	288	Phenazine biosynthesis-li	no	no	0.632	0.232	0.521	2e-13
P30039	288	Phenazine biosynthesis-li	yes	no	0.688	0.253	0.466	2e-13
Q2HJF4	288	Phenazine biosynthesis-li	yes	no	0.688	0.253	0.466	6e-13
Q5RDZ1	288	Phenazine biosynthesis-li	yes	no	0.688	0.253	0.453	8e-13
Q68G31	288	Phenazine biosynthesis-li	no	no	0.688	0.253	0.48	1e-12
Q9I073	259	Uncharacterized isomerase	yes	no	0.811	0.332	0.408	6e-11
Q9HY42	261	Uncharacterized isomerase	no	no	0.669	0.272	0.363	2e-07
Q9A3I3	275	Uncharacterized isomerase	yes	no	0.632	0.243	0.407	6e-07

>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus musculus GN=Pbld1 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADS--PNPRFR 67
          + DAFT +AF+GNPAAVCLLE   +E+  Q +A E N+S+T ++ +L   DS   + RF 
Sbjct: 7  IADAFTATAFRGNPAAVCLLERTLEEDAHQQIAREMNLSETAFIRKLQPTDSFTQSSRFG 66

Query: 68 LRWFTPVAEV 77
          LRWFTPV+EV
Sbjct: 67 LRWFTPVSEV 76

Mus musculus (taxid: 10090)
EC: 5EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLR 69
          VVDAFT+ AFKGNPAAVC+L   RD+ W+Q VASE N+S+T +L            + LR
Sbjct: 8  VVDAFTNQAFKGNPAAVCVLPTSRDDIWMQHVASEMNLSETAFLHPYQDG------YSLR 61

Query: 70 WFTPVAEVSF 79
          WFTP  EV  
Sbjct: 62 WFTPNTEVDL 71

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus musculus GN=Pbld2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
          + DAFT +AF+GNPAAVCLLE   DE+  Q +A E N+S+T ++ +L   D  + + RF 
Sbjct: 7  IADAFTATAFRGNPAAVCLLERTLDEDAHQDIAREMNLSETAFVRKLQPTDDFTQSSRFG 66

Query: 68 LRWFTPVAE 76
          LRWFTP AE
Sbjct: 67 LRWFTPEAE 75

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo sapiens GN=PBLD PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
          + DAFT  AF+GNPAAVCLLE + DE+  Q +A E N+S+T ++ +L   D  + +  F 
Sbjct: 7  IADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFAQSSCFG 66

Query: 68 LRWFTPVAEVSFSFY 82
          LRWFTP +EV    +
Sbjct: 67 LRWFTPASEVPLCGH 81

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos taurus GN=PBLD PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
          + DAFT  AF+GNPAAVCLLE   DE+  Q +A E N+S+T ++ +L   D  + +  F 
Sbjct: 7  IADAFTTKAFRGNPAAVCLLENKLDEDLHQKIAKEMNLSETAFIRKLHPNDNFTQSSCFG 66

Query: 68 LRWFTPVAEVSFSFY 82
          LRWFTP  EV    +
Sbjct: 67 LRWFTPQNEVPLCGH 81

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo abelii GN=PBLD PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
          + DAFT  AF+G+PAAVCLLE + DE+  Q +A E N+S+T ++ +L   D  + +  F 
Sbjct: 7  IADAFTARAFRGDPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFAQSSCFG 66

Query: 68 LRWFTPVAEVSFSFY 82
          LRWFTP +EV    +
Sbjct: 67 LRWFTPASEVPLCGH 81

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus norvegicus GN=Pbld PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
          + DAFT +AF GNPAAVCLLE    E+  Q +A E N+S+T ++ +L   D  S +  F 
Sbjct: 7  IADAFTVTAFHGNPAAVCLLESILQEDAHQQIAREMNLSETAFIRKLQPTDSFSQSSCFG 66

Query: 68 LRWFTPVAEVSFSFY 82
          LRWFTPV+EV    +
Sbjct: 67 LRWFTPVSEVPLCGH 81

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 12/98 (12%)

Query: 11  VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
           VDAF DS F+GNPAAVC L+   D+E LQA+A E N+S+T ++         +  +RLRW
Sbjct: 8   VDAFADSPFQGNPAAVCPLDAWLDDERLQAIAEENNLSETAFVV------GRDGDYRLRW 61

Query: 71  FTPVAEVSFSFYNY--KLWMKLFGSVLELDDLSFFMGF 106
           FTP  EV    +      W+ +     +LDD S  + F
Sbjct: 62  FTPQVEVDLCGHATLATAWVLIH----KLDDASPVLRF 95

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3578 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
          +++  VDAF+   F GNPA V  L+    +E +Q +A+E N+S+T ++ R   A      
Sbjct: 3  LEFHQVDAFSSRPFSGNPAVVYRLDAWLADELMQMIATEHNLSETAFVVREGEA------ 56

Query: 66 FRLRWFTPVAEVSFSFY 82
          +R+RWFTP  EV+   +
Sbjct: 57 WRIRWFTPSVEVALCGH 73

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 9/76 (11%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEE-D--RDEEWLQAVASEFNISQTCYLTRLTAADSPNPRF 66
           +DAF    F+GNPA  C+LE  D    + W+QA+A+E N ++T YL +    D    RF
Sbjct: 5  TIDAFATGPFRGNPA--CVLEPFDVWPADAWMQALAAENNQAETAYLLKTADPD----RF 58

Query: 67 RLRWFTPVAEVSFSFY 82
           LRWFTP  E     +
Sbjct: 59 GLRWFTPTLEAPLCGH 74

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 5

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
255559494	300	phenazine biosynthesis protein, putative	0.773	0.273	0.702	1e-28
255631226	219	unknown [Glycine max]	0.745	0.360	0.753	2e-28
356550129	302	PREDICTED: uncharacterized isomerase BH0	0.745	0.261	0.753	2e-28
296086726	303	unnamed protein product [Vitis vinifera]	0.773	0.270	0.730	5e-28
224109124	295	predicted protein [Populus trichocarpa]	0.773	0.277	0.726	6e-27
225436978	303	PREDICTED: uncharacterized isomerase BH0	0.773	0.270	0.685	9e-27
296086727	337	unnamed protein product [Vitis vinifera]	0.773	0.243	0.685	9e-27
357440789	356	Isomerase, putative [Medicago truncatula	0.726	0.216	0.734	1e-26
357440793	292	Isomerase, putative [Medicago truncatula	0.754	0.273	0.719	1e-26
388503766	295	unknown [Lotus japonicus]	0.754	0.271	0.695	2e-26

>gi|255559494|ref|XP_002520767.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540152|gb|EEF41729.1| phenazine biosynthesis protein, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 73/84 (86%), Gaps = 2/84 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
          M ++LV+Y VVDAFTDSAFKGNPAAVCLLEE+RD++WLQ+VA+EFN+S+TCYLTR+T +D
Sbjct: 1  MGEQLVKYFVVDAFTDSAFKGNPAAVCLLEEERDDKWLQSVAAEFNLSETCYLTRITDSD 60

Query: 61 --SPNPRFRLRWFTPVAEVSFSFY 82
            S NPRF LRWFTPV+EV    +
Sbjct: 61 TNSSNPRFHLRWFTPVSEVELCGH 84

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631226|gb|ACU15980.1| unknown [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 2/81 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAA- 59
          MAKK V+Y VVDAFT+SAFKGNPA+VC LEE+RDEEWLQAVA+EFNIS+TCYL+R+T + 
Sbjct: 3  MAKKPVKYYVVDAFTESAFKGNPASVCFLEEERDEEWLQAVAAEFNISETCYLSRITHSL 62

Query: 60 -DSPNPRFRLRWFTPVAEVSF 79
              NPRFRLRWFTPVAEV  
Sbjct: 63 HGISNPRFRLRWFTPVAEVKL 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550129|ref|XP_003543442.1| PREDICTED: uncharacterized isomerase BH0283 [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 2/81 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAA- 59
          MAKK V+Y VVDAFT+SAFKGNPA+VC LEE+RDEEWLQAVA+EFNIS+TCYL+R+T + 
Sbjct: 3  MAKKPVKYYVVDAFTESAFKGNPASVCFLEEERDEEWLQAVAAEFNISETCYLSRITHSL 62

Query: 60 -DSPNPRFRLRWFTPVAEVSF 79
              NPRFRLRWFTPVAEV  
Sbjct: 63 HGISNPRFRLRWFTPVAEVKL 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086726|emb|CBI32361.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 72/89 (80%), Gaps = 7/89 (7%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLT--- 57
          MAKK V+YSVVDAFTDSAFKGNPAAVCLLEE+RDE+WLQA+A EFN+SQT YLTR+T   
Sbjct: 1  MAKKPVKYSVVDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNVSQTGYLTRITKPE 60

Query: 58 AADSP----NPRFRLRWFTPVAEVSFSFY 82
          A DS      PRFRLRWFTPVAEV    +
Sbjct: 61 ALDSSTTILTPRFRLRWFTPVAEVKLCGH 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109124|ref|XP_002315091.1| predicted protein [Populus trichocarpa] gi|222864131|gb|EEF01262.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTA-- 58
          M KK V+Y VVDAFTDSAFKGNPAAVCLLE ++DE+WLQAVA+EFNISQT YLT +T   
Sbjct: 1  MGKKFVKYFVVDAFTDSAFKGNPAAVCLLEYEKDEKWLQAVAAEFNISQTGYLTPITTDV 60

Query: 59 ADSPNPRFRLRWFTPVAEVSFSFY 82
          A + NPRFRLRWFTPVAEV+   +
Sbjct: 61 AVTSNPRFRLRWFTPVAEVNLCGH 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436978|ref|XP_002276977.1| PREDICTED: uncharacterized isomerase BH0283-like [Vitis vinifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 7/89 (7%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLT--- 57
          MAKK V+++VVDAFTDSAFKGNPAAVCLLEE+RDE+WLQA+A EFNIS+TCYL R+T   
Sbjct: 1  MAKKPVKFTVVDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNISETCYLNRITEPE 60

Query: 58 AADSP----NPRFRLRWFTPVAEVSFSFY 82
          A DS      PRFRLRWFTP  EV+   +
Sbjct: 61 ALDSSTTILTPRFRLRWFTPTTEVNLCGH 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086727|emb|CBI32362.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 71/89 (79%), Gaps = 7/89 (7%)

Query: 1   MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLT--- 57
           MAKK V+++VVDAFTDSAFKGNPAAVCLLEE+RDE+WLQA+A EFNIS+TCYL R+T   
Sbjct: 35  MAKKPVKFTVVDAFTDSAFKGNPAAVCLLEEERDEDWLQALAMEFNISETCYLNRITEPE 94

Query: 58  AADSP----NPRFRLRWFTPVAEVSFSFY 82
           A DS      PRFRLRWFTP  EV+   +
Sbjct: 95  ALDSSTTILTPRFRLRWFTPTTEVNLCGH 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440789|ref|XP_003590672.1| Isomerase, putative [Medicago truncatula] gi|355479720|gb|AES60923.1| Isomerase, putative [Medicago truncatula]

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 67/79 (84%), Gaps = 2/79 (2%)

Query: 1   MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
           MAKK V+Y VVDAFTDSAFKGNPAAVCLLEED+D+EWLQ+VA+EFNIS+TCYLT +    
Sbjct: 64  MAKKHVKYYVVDAFTDSAFKGNPAAVCLLEEDKDDEWLQSVAAEFNISETCYLTSIHG-- 121

Query: 61  SPNPRFRLRWFTPVAEVSF 79
           +  PRF LRWFTPV EV+ 
Sbjct: 122 TSIPRFGLRWFTPVVEVNL 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440793|ref|XP_003590674.1| Isomerase, putative [Medicago truncatula] gi|217072906|gb|ACJ84813.1| unknown [Medicago truncatula] gi|355479722|gb|AES60925.1| Isomerase, putative [Medicago truncatula]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 67/82 (81%), Gaps = 2/82 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
          MAKK V+Y VVDAFTDSAFKGNPAAVCLLEED+D+EWLQ VA+EFNIS+TCYLT +    
Sbjct: 1  MAKKPVKYYVVDAFTDSAFKGNPAAVCLLEEDKDDEWLQLVAAEFNISETCYLTPIHGTS 60

Query: 61 SPNPRFRLRWFTPVAEVSFSFY 82
             PRF LRWFTPVAEV+   +
Sbjct: 61 I--PRFGLRWFTPVAEVNLCGH 80

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503766|gb|AFK39949.1| unknown [Lotus japonicus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 69/82 (84%), Gaps = 2/82 (2%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
          MA K V+Y VVDAFT+SAFKGNPAAVCLLEED+D++WLQAVA+EFNIS+TC+LTR+    
Sbjct: 1  MASKPVKYYVVDAFTESAFKGNPAAVCLLEEDKDDDWLQAVAAEFNISETCFLTRIDG-- 58

Query: 61 SPNPRFRLRWFTPVAEVSFSFY 82
          + NPRF LRWFTPV EV+   +
Sbjct: 59 TSNPRFGLRWFTPVVEVNLCGH 80

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2014485	286	AT1G03210 [Arabidopsis thalian	0.679	0.251	0.675	1.6e-22
TAIR|locus:2140265	313	AT4G02860 [Arabidopsis thalian	0.679	0.230	0.649	2.4e-21
TAIR|locus:2140250	306	AT4G02850 [Arabidopsis thalian	0.707	0.245	0.594	3.1e-19
MGI|MGI:1915621	288	Pbld1 "phenazine biosynthesis-	0.641	0.236	0.528	6.9e-15
ZFIN|ZDB-GENE-050417-456	286	zgc:113291 "zgc:113291" [Danio	0.641	0.237	0.507	1.9e-14
ZFIN|ZDB-GENE-040808-16	286	zgc:101129 "zgc:101129" [Danio	0.641	0.237	0.507	2.5e-14
UNIPROTKB|E1C460	288	PBLD "Uncharacterized protein"	0.632	0.232	0.536	2.7e-14
UNIPROTKB|I3LTZ8	282	PBLD "Uncharacterized protein"	0.641	0.241	0.528	4e-14
UNIPROTKB|J9P7Z1	316	PBLD "Uncharacterized protein"	0.716	0.240	0.481	6e-14
MGI|MGI:1914557	288	Pbld2 "phenazine biosynthesis-	0.632	0.232	0.521	6.1e-14

TAIR|locus:2014485 AT1G03210 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query:     3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEED--RDEEWLQAVASEFNISQTCYLTRLTAAD 60
             KK V+Y +VDAF +SAFKGNPAAVC LE+D  RD+ WLQ++A+EFNIS+TC+LT +   D
Sbjct:     4 KKRVKYFIVDAFAESAFKGNPAAVCFLEDDNERDDAWLQSLATEFNISETCFLTPIIG-D 62

Query:    61 SPNPRFRLRWFTPVAEV 77
              P  RFRLRWFTPVAEV
Sbjct:    63 LP--RFRLRWFTPVAEV 77

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

TAIR|locus:2140265 AT4G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query:     3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEED--RDEEWLQAVASEFNISQTCYLTRLTAAD 60
             KK V+Y VVDAFTDSAFKGNPAAVC L +D  RD+ WLQ++A+EFNIS+TC+L  +T   
Sbjct:    23 KKGVKYFVVDAFTDSAFKGNPAAVCFLNDDNERDDTWLQSLAAEFNISETCFLIPITGFQ 82

Query:    61 SPNPRFRLRWFTPVAEV 77
             +   RF LRWFTP+AEV
Sbjct:    83 A---RFSLRWFTPLAEV 96

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2140250 AT4G02850 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/79 (59%), Positives = 61/79 (77%)

Query:     1 MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEED--RDEEWLQAVASEFNISQTCYLTRLTA 58
             + KK V+Y +VDAFT+SAFKGN AAVC LEED  RD+ WLQ++ASEF++  TC+L  +  
Sbjct:     4 LVKKPVKYFMVDAFTESAFKGNQAAVCFLEEDHERDDVWLQSMASEFDLPLTCFLIPIPG 63

Query:    59 ADSPNPRFRLRWFTPVAEV 77
             ++ P PRF LRWFT VAE+
Sbjct:    64 SE-P-PRFLLRWFTAVAEM 80

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

MGI|MGI:1915621 Pbld1 "phenazine biosynthesis-like protein domain containing 1" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/70 (52%), Positives = 50/70 (71%)

Query:    10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADS--PNPRFR 67
             + DAFT +AF+GNPAAVCLLE   +E+  Q +A E N+S+T ++ +L   DS   + RF 
Sbjct:     7 IADAFTATAFRGNPAAVCLLERTLEEDAHQQIAREMNLSETAFIRKLQPTDSFTQSSRFG 66

Query:    68 LRWFTPVAEV 77
             LRWFTPV+EV
Sbjct:    67 LRWFTPVSEV 76

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-456 zgc:113291 "zgc:113291" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 35/69 (50%), Positives = 50/69 (72%)

Query:    11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD-SPNPRFRLR 69
             VDAFT   FKGNPAAVCLLE +  ++  Q++A+E N+S+T ++T+  + D S   RF LR
Sbjct:     8 VDAFTKVPFKGNPAAVCLLENELQDDIKQSIAAEMNLSETAFITKHISVDFSTGSRFGLR 67

Query:    70 WFTPVAEVS 78
             WFTP +E++
Sbjct:    68 WFTPKSEIA 76

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040808-16 zgc:101129 "zgc:101129" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query:    11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD-SPNPRFRLR 69
             VDAFT   FKGNPAAVCLLE +  ++  Q++A+E N+S+T ++T+  + D S   RF LR
Sbjct:     8 VDAFTKVPFKGNPAAVCLLENELQDDIKQSIAAEMNLSETAFITKHISVDFSSGSRFGLR 67

Query:    70 WFTPVAEVS 78
             WFTP  E++
Sbjct:    68 WFTPKTEIA 76

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C460 PBLD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query:    11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFRL 68
             VDAFT+  F GNPAAVCLLE D DE+  Q +A+E N+S+T ++ +L   D  + + RF L
Sbjct:     8 VDAFTNRPFCGNPAAVCLLENDLDEDLHQKIATEMNLSETAFIRKLHPTDDFTKSSRFGL 67

Query:    69 RWFTPVAEV 77
             RWFTP  EV
Sbjct:    68 RWFTPANEV 76

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|I3LTZ8 PBLD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 37/70 (52%), Positives = 47/70 (67%)

Query:    10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADS--PNPRFR 67
             + DAFT  AF+GNPAAVCLLE   DE+  Q VA E N+S+T ++ +L   D+      F 
Sbjct:     7 IADAFTAKAFRGNPAAVCLLENKLDEDMHQKVAREMNLSETAFIRKLHPTDNFTQTSCFG 66

Query:    68 LRWFTPVAEV 77
             LRWFTPV+EV
Sbjct:    67 LRWFTPVSEV 76

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|J9P7Z1 PBLD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 38/79 (48%), Positives = 53/79 (67%)

Query:     2 AKKL-VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
             A+K+ +   +VDAFT  AF+GNPAAVCLLE   DE+  Q +A E N+S+T ++ +L   D
Sbjct:    26 ARKMKLPIFIVDAFTAKAFRGNPAAVCLLENKLDEDVHQKIAREMNLSETAFIRKLNPTD 85

Query:    61 S--PNPRFRLRWFTPVAEV 77
             +   +  F LRWFTP +EV
Sbjct:    86 NFTQSSCFGLRWFTPASEV 104

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1914557 Pbld2 "phenazine biosynthesis-like protein domain containing 2" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 36/69 (52%), Positives = 48/69 (69%)

Query:    10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
             + DAFT +AF+GNPAAVCLLE   DE+  Q +A E N+S+T ++ +L   D  + + RF 
Sbjct:     7 IADAFTATAFRGNPAAVCLLERTLDEDAHQDIAREMNLSETAFVRKLQPTDDFTQSSRFG 66

Query:    68 LRWFTPVAE 76
             LRWFTP AE
Sbjct:    67 LRWFTPEAE 75

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_X0673	hypothetical protein (295 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.1450000101	hypothetical protein (183 aa)	•								0.531
	eugene3.13710002	Predicted protein (222 aa)	•								0.470
	eugene3.51240001	annotation not avaliable (258 aa)	•								0.435
	eugene3.213590001	Predicted protein (131 aa)	•								0.412
	gw1.V.4683.1	annotation not avaliable (173 aa)	•								0.409

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam02567	280	pfam02567, PhzC-PhzF, Phenazine biosynthesis-like	5e-31
COG0384	291	COG0384, COG0384, Predicted epimerase, PhzC/PhzF h	9e-23
TIGR00654	297	TIGR00654, PhzF_family, phenazine biosynthesis pro	4e-15
PRK10281	299	PRK10281, PRK10281, hypothetical protein; Provisio	1e-11

>gnl|CDD|217109 pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein

 Score =  110 bits (276), Expect = 5e-31
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
          VDAFTDS FKGNPAAV L  ++  +E +QA+A+EFN+S+T ++   +  D     FRLR 
Sbjct: 1  VDAFTDSPFKGNPAAVVLDADELTDEEMQAIAAEFNLSETAFVLPPSDED---ADFRLRI 57

Query: 71 FTPVAEVSF 79
          FTPVAEV F
Sbjct: 58 FTPVAEVPF 66

PhzC/PhzF is involved in dimerisation of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains an uncharacterized protein Rv2715 from Mycobacterium tuberculosis, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesised to be active site residues (Bateman A pers obs). Length = 280

>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]

 Score = 88.5 bits (220), Expect = 9e-23
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
          +    VD FT   F GNP AV L  +   +E +QA+A EFN+S+T ++            
Sbjct: 4  IPVYQVDVFTSKPFGGNPLAVVLDADGLSDEQMQAIAREFNLSETAFVLPPDDPA----D 59

Query: 66 FRLRWFTPVAEVSF 79
           RLR FTP  EV F
Sbjct: 60 ARLRIFTPTTEVPF 73

Length = 291

>gnl|CDD|129739 TIGR00654, PhzF_family, phenazine biosynthesis protein PhzF family

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 4  KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPN 63
           +V +  VD FT   F GNPAAV    E   EE +QA+A+E N S+T +L + ++     
Sbjct: 1  LMVPFYQVDVFTSQPFMGNPAAVVNFAEILSEEEMQAIANETNYSETTFLLKPSSEKY-- 58

Query: 64 PRFRLRWFTPVAEVSF 79
            +RLR FTP +E+ F
Sbjct: 59 -DYRLRIFTPRSELPF 73

Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear [Cellular processes, Toxin production and resistance]. Length = 297

>gnl|CDD|182354 PRK10281, PRK10281, hypothetical protein; Provisional

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLR 69
           VDAFT   F+GN A V L  +   E  +Q +A E N S+T +   L ++D  +   R+R
Sbjct: 7  HVDAFTSQPFRGNSAGVVLNADGLSEAQMQLIARELNHSETAF---LLSSDDSSYDVRVR 63

Query: 70 WFTPVAEV 77
          +FTP  EV
Sbjct: 64 YFTPTVEV 71

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
COG0384	291	Predicted epimerase, PhzC/PhzF homolog [General fu	100.0
PRK10281	299	hypothetical protein; Provisional	100.0
PF02567	281	PhzC-PhzF: Phenazine biosynthesis-like protein; In	100.0
KOG3033	286	consensus Predicted PhzC/PhzF-type epimerase [Gene	99.96
TIGR00654	297	PhzF_family phenazine biosynthesis protein PhzF fa	99.95
PRK13971	333	hydroxyproline-2-epimerase; Provisional	99.73
PRK13970	311	hydroxyproline-2-epimerase; Provisional	99.56
PRK13577	281	diaminopimelate epimerase; Provisional	99.51
PRK00450	274	dapF diaminopimelate epimerase; Provisional	99.37
TIGR00652	268	DapF diaminopimelate epimerase.	98.9
PLN02536	267	diaminopimelate epimerase	97.62
PRK13969	334	proline racemase; Provisional	96.28
PF05544	325	Pro_racemase: Proline racemase; InterPro: IPR00879	93.49
COG0253	272	DapF Diaminopimelate epimerase [Amino acid transpo	92.31
TIGR00654	297	PhzF_family phenazine biosynthesis protein PhzF fa	91.66
PF01678	121	DAP_epimerase: Diaminopimelate epimerase; InterPro	86.82
COG4840	71	Uncharacterized protein conserved in bacteria [Fun	82.15
COG3938	341	Proline racemase [Amino acid transport and metabol	81.86

>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]

Probab=100.00  E-value=3.6e-36  Score=237.87  Aligned_cols=80  Identities=38%  Similarity=0.502  Sum_probs=74.8

Q ss_pred             CcceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCc
Q 034019            3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFY   82 (106)
Q Consensus         3 ~~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGH   82 (106)
                      |..++|++|||||+++|+|||+|||.++++|++++||+||+|+|+|||+||.+++   ++ .+++||||||+.|+|||||
T Consensus         1 ~~~~~~~~vDvFt~~~~~GNp~aVv~~a~~Lsd~~MQ~IA~e~n~SET~Fv~~~~---~~-~~~rlR~FTP~~Evpf~GH   76 (291)
T COG0384           1 MMTIPVYQVDVFTSKPFGGNPLAVVLDADGLSDEQMQAIAREFNLSETAFVLPPD---DP-ADARLRIFTPTTEVPFAGH   76 (291)
T ss_pred             CCccceEEEEEecCCCCCCCceEEEeCCCCCCHHHHHHHHHHhCCceeEEEcCCC---Cc-CceEEEEeCCCcccccCCC
Confidence            4568899999999999999999999999999999999999999999999999983   33 6899999999999999999


Q ss_pred             hHHH
Q 034019           83 NYKL   86 (106)
Q Consensus        83 atva   86 (106)
                      +|++
T Consensus        77 aTlg   80 (291)
T COG0384          77 ATLG   80 (291)
T ss_pred             HHHH
Confidence            9986

>PRK10281 hypothetical protein; Provisional

Probab=100.00  E-value=7e-36  Score=235.16  Aligned_cols=78  Identities=35%  Similarity=0.442  Sum_probs=72.4

Q ss_pred             eeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHH
Q 034019            6 VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus         6 ~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatv   85 (106)
                      ++|++|||||+++|+|||+|||+++++|++++||+||||+|+|||+||.++.   ++.++|+||||||..|||||||||+
T Consensus         3 ~~~~~vDaFt~~~f~GNpaaVv~~a~~L~~~~Mq~IAre~n~SETaFv~~~~---~~~~~~~lR~FTP~~Ev~fcGHaTl   79 (299)
T PRK10281          3 PQIYHVDAFTSQPFRGNSAGVVLNADGLSEAQMQLIARELNHSETAFLLSSD---DSSYDVRVRYFTPTVEVPICGHATV   79 (299)
T ss_pred             ceEEEEEeccCCCCCCCceEEEcCCCCCCHHHHHHHHHHhCCceEEEEccCC---CCCCceEEEEECCCcccccCCcHHH
Confidence            6899999999999999999999999999999999999999999999999762   2245799999999999999999998


Q ss_pred             H
Q 034019           86 L   86 (106)
Q Consensus        86 a   86 (106)
                      +
T Consensus        80 a   80 (299)
T PRK10281         80 A   80 (299)
T ss_pred             H
Confidence            4

>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens)

Probab=100.00  E-value=9.3e-34  Score=216.99  Aligned_cols=73  Identities=44%  Similarity=0.632  Sum_probs=66.8

Q ss_pred             EeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHHH
Q 034019           11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKL   86 (106)
Q Consensus        11 vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatva   86 (106)
                      |||||+++|+|||+|||+++++|++++||+||+|+|+|||+||.+++   ++.++|+||||||.+|+|||||+|++
T Consensus         1 vdaFt~~~f~GNp~aVv~~~~~l~~~~mq~iA~e~n~sET~Fv~~~~---~~~~~~~vR~FTp~~Ev~fcGH~tla   73 (281)
T PF02567_consen    1 VDAFTDRPFGGNPAAVVLDADGLSDEQMQAIAREFNLSETAFVLPST---DDEADYRVRIFTPTGEVPFCGHATLA   73 (281)
T ss_dssp             EEET-SSTTSSEEEEEEESSTTS-HHHHHHHHHHHTSSEEEEEEEES---SSTTSEEEEEEESSSEESSSHHHHHH
T ss_pred             CccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHHcCCCeeEEEEecc---CCCceeEEEEEeccCCCCCCCcHHHH
Confidence            79999999999999999999999999999999999999999999983   34678999999999999999999984

Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....

>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only]

Probab=99.96  E-value=2.2e-29  Score=196.90  Aligned_cols=98  Identities=50%  Similarity=0.808  Sum_probs=82.9

Q ss_pred             CCCcceeEEEEeeccCCCCCCCeeEEEEcCC-CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCC
Q 034019            1 MAKKLVQYSVVDAFTDSAFKGNPAAVCLLEE-DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSF   79 (106)
Q Consensus         1 m~~~~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~   79 (106)
                      |.. +.+|++||+|++.+|.|||++|+.+++ ..|++++|+||+|+|+|||+|+.|..  -....+|.||||||..|+||
T Consensus         1 m~~-~~~~~ivd~ft~~~f~gnpaav~~l~ene~d~e~Lq~iA~efNlSET~Fl~pi~--~~~~~~f~LRwFTp~aEvpl   77 (286)
T KOG3033|consen    1 MTE-KKPYFIVDAFTEKAFKGNPAAVCFLEENERDDEYLQSIAAEFNLSETAFLIPIG--GKKCSRFSLRWFTPTAEVPL   77 (286)
T ss_pred             CCc-ccceeeeeeeecccccCCcceeeecccccccHHHHHHHHHhhCcccceeeecCC--CCcccceeEEEecccccCcc
Confidence            443 467999999999999999999999886 46899999999999999999999983  12356899999999999999


Q ss_pred             CCchHHHHH-HHc------CCeEEEeeec
Q 034019           80 SFYNYKLWM-KLF------GSVLELDDLS  101 (106)
Q Consensus        80 cGHatvaw~-~~~------~~~~~~~~~~  101 (106)
                      |||||+|-. .++      .+.+.++|+|
T Consensus        78 cGHaTLasahvlf~~~~n~n~~l~f~t~s  106 (286)
T KOG3033|consen   78 CGHATLASAHVLFNEIGNVNKELKFDTLS  106 (286)
T ss_pred             cCcchhhHHHHHHHhccCCcceEEEEeec
Confidence            999998633 222      7788888887

>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family

Probab=99.95  E-value=3.6e-28  Score=188.50  Aligned_cols=77  Identities=42%  Similarity=0.535  Sum_probs=71.3

Q ss_pred             eeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHH
Q 034019            6 VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus         6 ~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatv   85 (106)
                      ++|++|||||+.+++|||++||.+.++|++++||+||+|+|+|||+||.++.   ++.++|++|||||..|++||||+++
T Consensus         3 ~~~~~vd~Ft~~~~~GN~~~Vv~~~~~l~~~~mq~iA~~~~~~et~Fv~~~~---~~~~~~~~R~Fnpg~E~~~CGh~tl   79 (297)
T TIGR00654         3 VPFYQVDVFTSQPFMGNPAAVVNFAEILSEEEMQAIANETNYSETTFLLKPS---SEKYDYRLRIFTPRSELPFAGHPTI   79 (297)
T ss_pred             ceEEEEEeccCCCCCCCceEEEcCCCCCCHHHHHHHHHHhCCCceEEEcCCC---CCCCceEEEEECCCCccCcCCchHH
Confidence            7899999999999999999999998899999999999999999999999752   2346799999999999999999987

Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.

>PRK13971 hydroxyproline-2-epimerase; Provisional

Probab=99.73  E-value=1.2e-17  Score=134.62  Aligned_cols=74  Identities=16%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCC-CCCHHHH----HHHHHHhCCcee--------------EEEecCCCCCCCCCc
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEE-DRDEEWL----QAVASEFNISQT--------------CYLTRLTAADSPNPR   65 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~~~~m----q~IA~e~n~sET--------------aFv~~~~~~~~~~~~   65 (106)
                      ...|.+||+|+    +|||+.||.+.. .|+.+.|    |.|++|++++++              +||.||.   ++.++
T Consensus         3 ~~~~~~VD~ht----~Gep~rVV~~g~p~l~g~tm~ek~~~~~~e~d~~r~~L~~EPRGh~~m~g~~l~pp~---~~~Ad   75 (333)
T PRK13971          3 RHTFFCIDAHT----CGNPVRLVAGGGPLLQGATMSEKRAHFLREYDWIRTGLMFEPRGHDMMSGSILYPPT---RPDCD   75 (333)
T ss_pred             cceEEEEEecC----CCcceeEEECCCCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEEECCC---CCCCC
Confidence            45699999995    999999999977 5888777    999999999998              9999984   45678


Q ss_pred             eEEEEecCCCccCCCCchHH
Q 034019           66 FRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        66 ~~vR~FTp~~Ei~~cGHatv   85 (106)
                      +++|||||.+|+|||||+|+
T Consensus        76 ~gvrfFtp~~e~~mcGH~TI   95 (333)
T PRK13971         76 FAILFIETSGCLPMCGHGTI   95 (333)
T ss_pred             EEEEEECCCcccCcCccHHH
Confidence            99999999999999999997

>PRK13970 hydroxyproline-2-epimerase; Provisional

Probab=99.56  E-value=1.2e-14  Score=116.41  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             eEEEEeeccCCCCCCCeeEEEEcCC-----CCCHHHHHHHHHHhCCceeEEEecCC-----------CCCCCCCceEEEE
Q 034019            7 QYSVVDAFTDSAFKGNPAAVCLLEE-----DRDEEWLQAVASEFNISQTCYLTRLT-----------AADSPNPRFRLRW   70 (106)
Q Consensus         7 ~~~~vdvFt~~~f~GNPaaVv~~~~-----~l~~~~mq~IA~e~n~sETaFv~~~~-----------~~~~~~~~~~vR~   70 (106)
                      ++.+||+|    .+|||+.||....     ++..++||.|+++++.++|+|+..|.           ++.++.+++.++|
T Consensus         4 ~i~~VDaH----t~GeP~rVV~~G~p~l~G~t~~Ek~~~~~~~~d~~R~~l~~EPRG~~~M~gall~pP~~p~Ad~gvif   79 (311)
T PRK13970          4 RIQIIDSH----TGGEPTRLVVSGFPSLGGGTMAERRDVLAREHDRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIF   79 (311)
T ss_pred             EEEEEEec----CCCCceEEEecCCCCCCCCCHHHHHHHHHHhhChhhheeeeCCCCCccceeeeecCCCCcccCEEEEE
Confidence            79999999    8999999999876     56899999999999999999999774           1123567889999


Q ss_pred             ecCCCccCCCCchHHH
Q 034019           71 FTPVAEVSFSFYNYKL   86 (106)
Q Consensus        71 FTp~~Ei~~cGHatva   86 (106)
                      |+|.+|+++|||+|++
T Consensus        80 ~~~~g~~~mCGH~TIa   95 (311)
T PRK13970         80 FNNSGYLGMCGHGTIG   95 (311)
T ss_pred             EcCCCcccccccchhe
Confidence            9999999999999984

>PRK13577 diaminopimelate epimerase; Provisional

Probab=99.51  E-value=5.7e-14  Score=109.36  Aligned_cols=68  Identities=24%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             ccCCCCCCCeeEEEEcCC---CCCHHHHHHHH-HHhCCceeEEEe-cCCCCCCCCCceEEEEecCCC-ccCCCCchH
Q 034019           14 FTDSAFKGNPAAVCLLEE---DRDEEWLQAVA-SEFNISQTCYLT-RLTAADSPNPRFRLRWFTPVA-EVSFSFYNY   84 (106)
Q Consensus        14 Ft~~~f~GNPaaVv~~~~---~l~~~~mq~IA-~e~n~sETaFv~-~~~~~~~~~~~~~vR~FTp~~-Ei~~cGHat   84 (106)
                      |++=...||+..||.+.+   ++++++||+|| |++|++|+.||. ++.   ++.++|++|||+|.+ |.+||||++
T Consensus         3 f~K~~g~GNdfvVvd~~~~~~~~~~~~~~~i~~R~~gig~Dg~i~~~~~---~~~~d~~mrifn~DGseaemCGNg~   76 (281)
T PRK13577          3 FYKYHALGNDYLVIDPRDAPFDPSADAIRRICHRHFGVGSDGILFGPLP---SEGADFGLRIFNPDGSEAEKSGNGL   76 (281)
T ss_pred             EEEecCCCCCEEEEECCCCCCCCCHHHHHHhhccccCcCCCEEEEEecC---CCCCCEEEEEEcCCCCHHHhccccH
Confidence            666778999999998755   67899999999 999999999998 331   235689999999996 999999998

>PRK00450 dapF diaminopimelate epimerase; Provisional

Probab=99.37  E-value=2.5e-12  Score=98.91  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             ccCCCCCCCeeEEEEcCCC-CCHHHHHHHHH-H--hCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHHH--
Q 034019           14 FTDSAFKGNPAAVCLLEED-RDEEWLQAVAS-E--FNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYKL--   86 (106)
Q Consensus        14 Ft~~~f~GNPaaVv~~~~~-l~~~~mq~IA~-e--~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatva--   86 (106)
                      |.+=.-.||=--+|..... ...+.-+++.. .  +|+|||+||.++.   ++.++|++|||||. .|+|||||||++  
T Consensus         5 f~k~~~~gNdf~~~~~~~~~~~~~~~~~~~~r~~gig~det~Fv~~~~---~~~ad~~~R~Ftp~gsEv~~CGHat~~~a   81 (274)
T PRK00450          5 FTKMHGLGNDFVVIDARTQELTPELARKLCDRHFGIGADGLLLVEPPS---SPGADFRMRIFNADGSEAEMCGNGARCFA   81 (274)
T ss_pred             EEEEecCCCCEEEEeCCCCcCcHHHHHHhhccCCccCCCeEEEEccCC---CCCCCEEEEEEECCCCHHHcCcchHHHHH
Confidence            5555667888777765433 22333334433 2  6889999999752   23568999999999 599999999873  


Q ss_pred             HHHHc-----CCeEEEeeec
Q 034019           87 WMKLF-----GSVLELDDLS  101 (106)
Q Consensus        87 w~~~~-----~~~~~~~~~~  101 (106)
                      |....     .+.+.+++.+
T Consensus        82 ~~L~~~g~~~~~~~~~~t~~  101 (274)
T PRK00450         82 RFLYEKGLTNKTEIRVETLA  101 (274)
T ss_pred             HHHHHcCCCCCCeEEEEeCC
Confidence            33221     2356666543

>TIGR00652 DapF diaminopimelate epimerase

Probab=98.90  E-value=6.7e-09  Score=80.22  Aligned_cols=48  Identities=15%  Similarity=0.334  Sum_probs=38.6

Q ss_pred             CHHHHHHHHH---HhCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH
Q 034019           34 DEEWLQAVAS---EFNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK   85 (106)
Q Consensus        34 ~~~~mq~IA~---e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv   85 (106)
                      +.+.++++..   ++|.+||+||.+.    ++.++|++|||||. .|++||||+++
T Consensus        26 ~~~~~~~l~~r~~~ig~d~~~fv~~~----~~~ad~~~r~Fnpdg~e~~~CGh~t~   77 (268)
T TIGR00652        26 EPEFVRQVCDRHFGIGADGVLFVEPG----SPEADYKMRIFNSDGSEAEMCGNGIR   77 (268)
T ss_pred             CHHHHHHhcccCccccccEEEEEcCC----CCCccEEEEEEeCCCCHHHhCcCcHH
Confidence            4566777773   4689999999863    23568999999999 49999999986

>PLN02536 diaminopimelate epimerase

Probab=97.62  E-value=0.00024  Score=55.49  Aligned_cols=49  Identities=10%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHH-hC--CceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH
Q 034019           33 RDEEWLQAVASE-FN--ISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK   85 (106)
Q Consensus        33 l~~~~mq~IA~e-~n--~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv   85 (106)
                      ++.++.++++.+ ++  ----+||.++    ...++|++|||+|. .|.++|||++.
T Consensus        11 ~~~~~~~~lc~R~~GiGaDgli~i~~~----~~~ad~~mrifN~DGSea~mCGNg~R   63 (267)
T PLN02536         11 LTPEQAVKLCDRNFGIGADGVIFAMPG----VNGTDYTMRIFNSDGSEPEMCGNGIR   63 (267)
T ss_pred             CCHHHHHHhcccCCCcCCCEEEEEecC----CCCccEEEEEEcCCCChhhhCccHHH
Confidence            467778888874 43  3567898865    22467999999999 69999999975

>PRK13969 proline racemase; Provisional

Probab=96.28  E-value=0.012  Score=47.96  Aligned_cols=88  Identities=9%  Similarity=0.041  Sum_probs=56.3

Q ss_pred             eEEEEeeccCCCCCCCeeEEEEcCC-CC---C-HHHHHHHHHHhC------------Cc--eeEEEecCCCCCCCCCceE
Q 034019            7 QYSVVDAFTDSAFKGNPAAVCLLEE-DR---D-EEWLQAVASEFN------------IS--QTCYLTRLTAADSPNPRFR   67 (106)
Q Consensus         7 ~~~~vdvFt~~~f~GNPaaVv~~~~-~l---~-~~~mq~IA~e~n------------~s--ETaFv~~~~~~~~~~~~~~   67 (106)
                      .+.+||+    ...|+|.=||...- ++   + .++|+.+.+++.            ..  =-+++.||.   ++.+++.
T Consensus         6 ~~~~id~----Ht~GEp~Riv~~G~p~l~g~t~~ek~~~~~~~~D~lR~~L~~EPRGh~~m~g~ll~pp~---~~~Ad~g   78 (334)
T PRK13969          6 SIQTIDS----HTMGEPTRIVVGGLPKIPGKTMAEKKEYLEENNDSLRTALMSEPRGHNDMFGSIYTEPA---DETADFG   78 (334)
T ss_pred             eEEEEEc----cCCCCCEEEEecCCCCCCCCCHHHHHHHHHHhHHHHHHHhhcCCCCCCccEEEEEeCCC---CCCCCEE
Confidence            3666664    67899999998532 12   2 234444444311            11  235787773   4568999


Q ss_pred             EEEecCCCccCCCCchHHH---HHHHcC--------CeEEEeeec
Q 034019           68 LRWFTPVAEVSFSFYNYKL---WMKLFG--------SVLELDDLS  101 (106)
Q Consensus        68 vR~FTp~~Ei~~cGHatva---w~~~~~--------~~~~~~~~~  101 (106)
                      ++||-..++.++|||++++   |+...|        ..+.+||++
T Consensus        79 vif~~~~gy~~MCGhgtI~vat~l~e~G~v~~~~~~~~v~ieTPa  123 (334)
T PRK13969         79 IIFMDGGGYLNMCGHGSIGAATCAVETGIVKVEEPYTHIKLEAPA  123 (334)
T ss_pred             EEEEeCCcccccccChHHHHHHHHHHcCCcCCCCCceeEEEECCc
Confidence            9999999999999999873   443222        146777764

>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5

Probab=93.49  E-value=0.17  Score=41.23  Aligned_cols=81  Identities=10%  Similarity=0.018  Sum_probs=50.2

Q ss_pred             CCCCCeeEEEEcCC-CC---C-HHHHHHHHHHhC------------Cc--eeEEEecCCCCCCCCCceEEEEecCCCccC
Q 034019           18 AFKGNPAAVCLLEE-DR---D-EEWLQAVASEFN------------IS--QTCYLTRLTAADSPNPRFRLRWFTPVAEVS   78 (106)
Q Consensus        18 ~f~GNPaaVv~~~~-~l---~-~~~mq~IA~e~n------------~s--ETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~   78 (106)
                      ...|+|.=||...- .+   + .+.|+.+.++..            ..  =-+++.||.   ++++++.+=|+-+.+=.+
T Consensus         5 Ht~GEp~RIV~~G~p~l~G~T~~Ek~~~~~~~~D~lR~~Lm~EPRGh~~M~Gall~pp~---~~~Ad~Gvif~~~~gy~~   81 (325)
T PF05544_consen    5 HTGGEPTRIVTGGIPDLPGNTMLEKREYFRENHDHLRRLLMFEPRGHADMYGALLVPPC---DPEADFGVIFMHNEGYSP   81 (325)
T ss_dssp             EETTEEEEEEEESS---SSSSHHHHHHHHHHH-HHHHHHHHSTTTS-TT-EEEEEE--S---STTSSEEEEEEESSSC-S
T ss_pred             cCCCCCeEEEeCCcCCCCCCCHHHHHHHHHHhHHHHHHhheeCCCCCCceEEEEEcCCC---CCCCCEEEEEEcCCCCCC
Confidence            35799999998642 22   2 244555544421            11  246888884   467899999999999999


Q ss_pred             CCCchHHH---HHHHc--------CCeEEEeeec
Q 034019           79 FSFYNYKL---WMKLF--------GSVLELDDLS  101 (106)
Q Consensus        79 ~cGHatva---w~~~~--------~~~~~~~~~~  101 (106)
                      +|||+|++   |+...        ...++||+++
T Consensus        82 McGh~tI~~~t~lve~G~v~~~~~~t~v~letPa  115 (325)
T PF05544_consen   82 MCGHGTIAVATALVETGLVPMKEPETEVRLETPA  115 (325)
T ss_dssp             STHHHHHHHHHHHHHTTSS-SECCECEEEEEETT
T ss_pred             CcccHHHHHHHHHHHCCcccCCCCCEEEEEECCC
Confidence            99999873   55433        2356677654

1.1.4 from EC) proteins which catalyse the interconversion of L- and D-proline in bacteria []. This family also contains several similar eukaryotic proteins including Q9NCP4 from SWISSPROT a sequence with B-cell mitogenic properties which has been characterised as a co-factor-independent proline racemase [].; GO: 0018112 proline racemase activity; PDB: 1TM0_A 2AZP_A 1W61_B 1W62_A.

>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]

Probab=92.31  E-value=1.4  Score=35.12  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             ccCCCCCCCeeEEEEcCCC---CCHHHHHHHHHHh---CCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH-
Q 034019           14 FTDSAFKGNPAAVCLLEED---RDEEWLQAVASEF---NISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK-   85 (106)
Q Consensus        14 Ft~~~f~GNPaaVv~~~~~---l~~~~mq~IA~e~---n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv-   85 (106)
                      |+.=.-.||---||..-+.   ..++.-.+|+.+-   +.---.||.+|.   ++..++++|+|+.. .|..+||-++- 
T Consensus         3 F~KmhG~GNdfivvd~~~~~~~~~~~~a~~l~~r~~giGaDgvl~i~~p~---s~~~d~~~rifN~DGS~ae~CGNG~Rc   79 (272)
T COG0253           3 FSKMHGLGNDFIVVDEFDKKDEETPELARALCDRHFGIGADGVLFVEPPR---SPGADFHLRIFNSDGSEAEMCGNGARC   79 (272)
T ss_pred             eEEEcCCCCcEEEEeccccccccCHHHHHHHHhcccCcCCceEEEEecCC---CCCCCEEEEEEeCCCCHHhhcccHHHH
Confidence            4445567777776654332   3566666777665   355567998763   34678999999997 59999999953 


Q ss_pred             -H---HHHHc--CCeEEEeeec
Q 034019           86 -L---WMKLF--GSVLELDDLS  101 (106)
Q Consensus        86 -a---w~~~~--~~~~~~~~~~  101 (106)
                       |   +....  .+.+.+.|++
T Consensus        80 ~a~~l~~~~~~~~~~~~v~T~~  101 (272)
T COG0253          80 FARFLAERGLVKKKEISVETLA  101 (272)
T ss_pred             HHHHHHHhcCCcCccEEEEecc
Confidence             2   33322  2336776654

>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family

Probab=91.66  E-value=1.8  Score=33.56  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=43.4

Q ss_pred             CCCCeeEEEEcCCC-------CCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCC---ccCCCCchH
Q 034019           19 FKGNPAAVCLLEED-------RDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVA---EVSFSFYNY   84 (106)
Q Consensus        19 f~GNPaaVv~~~~~-------l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~---Ei~~cGHat   84 (106)
                      ..|||-.||..++.       ++.+.+.++.++++. ..+|+...+.+.....++++|.|.|..   |=|-||-|.
T Consensus       160 ~~G~ph~vv~v~~~~~l~~~~~d~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~R~f~p~~g~~EDpatGSa~  234 (297)
T TIGR00654       160 STGPEWIVIPLKDEEACFNASPNFAMLAHQLKQNDH-VGVIPFGPKKEAAGKNDYHGRMFAPVIGIYEDPVTGSGS  234 (297)
T ss_pred             ecCCCeEEEEeCCHHHHHhCCCCHHHHHHHHhhcCc-cEEEEEecCCCCCCCceEEEEeCCCCCCCcCCCcccHHH
Confidence            46999999886541       134455666666764 466776653211123469999999973   999999984

Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.

>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=86.82  E-value=4.3  Score=27.41  Aligned_cols=77  Identities=14%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             CCCCeeEEEEcCC-C----CCHHHHHHHHHHh---CCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH--H-
Q 034019           19 FKGNPAAVCLLEE-D----RDEEWLQAVASEF---NISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK--L-   86 (106)
Q Consensus        19 f~GNPaaVv~~~~-~----l~~~~mq~IA~e~---n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv--a-   86 (106)
                      ..|||=.|++.++ .    ++++.-++|...-   +-.-..|+...     +..++++|+|.+. .|-..||-++.  + 
T Consensus         4 ~~G~ph~vi~vd~~~~~~~~~~~~~~~~~~~~~~~~~dnv~fv~~~-----~~~~~~~r~~n~~g~et~aCGnG~~~~a~   78 (121)
T PF01678_consen    4 MHGNPHDVIFVDDREEEDDLDSELARAICDRHFFPGGDNVNFVEIS-----DDADIRMRIFNRDGSETLACGNGCRCAAA   78 (121)
T ss_dssp             ECSSEEEEEEEETTTCSSTCCHHHHHHHHTTTTSTT-SEEEEEEEE-----CTTEEEEEEEETTSBEESTTHHHHHHHHH
T ss_pred             EeCCCcEEEEEcCcccccccchhhhhhhhccccCCcccceEEEEEe-----cCCcEEEEEEECCCCeeeecCcHHHHHHH
Confidence            4689988887543 1    1222333333221   12234588754     3578999999996 79999999842  2 


Q ss_pred             HHHHc----CCeEEEeee
Q 034019           87 WMKLF----GSVLELDDL  100 (106)
Q Consensus        87 w~~~~----~~~~~~~~~  100 (106)
                      |+...    .+.+.++++
T Consensus        79 ~~~~~~~~~~~~v~v~t~   96 (121)
T PF01678_consen   79 YLLEGGIVGKDEVTVETP   96 (121)
T ss_dssp             HHHHTTSSSSSEEEEEET
T ss_pred             HHHHCCCCcceEEEEEeC
Confidence            33322    467776654

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....

>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.15  E-value=1.1  Score=29.21  Aligned_cols=17  Identities=29%  Similarity=0.315  Sum_probs=14.3

Q ss_pred             CCCCHHHHHHHHHHhCC
Q 034019           31 EDRDEEWLQAVASEFNI   47 (106)
Q Consensus        31 ~~l~~~~mq~IA~e~n~   47 (106)
                      +..|+.+||+||.|++.
T Consensus        52 enfSpsEmqaiA~eL~r   68 (71)
T COG4840          52 ENFSPSEMQAIADELGR   68 (71)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            45689999999999873

>COG3938 Proline racemase [Amino acid transport and metabolism]

Probab=81.86  E-value=8.5  Score=31.73  Aligned_cols=73  Identities=15%  Similarity=0.081  Sum_probs=51.3

Q ss_pred             eeEEEEeeccCCCCCCCeeEEEEcCCC-C----CHHHHHHHHHHhC-C-----c--------eeEEEecCCCCCCCCCce
Q 034019            6 VQYSVVDAFTDSAFKGNPAAVCLLEED-R----DEEWLQAVASEFN-I-----S--------QTCYLTRLTAADSPNPRF   66 (106)
Q Consensus         6 ~~~~~vdvFt~~~f~GNPaaVv~~~~~-l----~~~~mq~IA~e~n-~-----s--------ETaFv~~~~~~~~~~~~~   66 (106)
                      ..+++||+    ...|||-=||...-. +    =.|++.-++++.. +     -        --.-++|+.   .+.++.
T Consensus         5 ~ti~~id~----HteGe~grvV~GG~p~~pg~tm~Eq~~~~~~d~d~lR~~l~~EPRG~~~~~~~lL~Pp~---~pda~a   77 (341)
T COG3938           5 KTIHCIDC----HTEGEPGRVVVGGVPPLPGATMWEQRRWFARDHDWLRNFLMFEPRGHDFRSGNLLVPPK---RPDADA   77 (341)
T ss_pred             eEEEEEcc----ccCCcceeEEEcCCCCCCCCcHHHHHHHHhcchHHHHHhheeCCCCCcceeeeEecCCC---CCCccE
Confidence            45788876    567999999986542 2    2466777777643 0     0        122445553   456789


Q ss_pred             EEEEecCCCccCCCCchHH
Q 034019           67 RLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        67 ~vR~FTp~~Ei~~cGHatv   85 (106)
                      .+=|+-|+.=.|+|||+|+
T Consensus        78 a~ii~eps~~~pMsGsntI   96 (341)
T COG3938          78 AVIIMEPSGCLPMSGSNTI   96 (341)
T ss_pred             EEEEEccCCCCCcCCCCch
Confidence            9999999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
4dun_A	263	1.76a X-Ray Crystal Structure Of A Putative Phenazi		4e-10
1s7j_A	262	Crystal Structure Of Phenazine Biosynthesis Protein		1e-08
1ym5_A	300	Crystal Structure Of Yhi9, The Yeast Member Of The		1e-06
1qya_A	307	Crystal Structure Of E. Coli Protein Ydde Length =		1e-06
1sdj_A	310	X-Ray Structure Of Ydde_ecoli Northeast Structural		3e-06
1qy9_A	297	Crystal Structure Of E. Coli Se-met Protein Ydde Le		4e-06
1u1w_A	298	Structure And Function Of Phenazine-biosynthesis Pr		1e-05
1t6k_A	278	Crystal Structure Of Phzf From Pseudomonas Fluoresc		2e-05
1xub_A	298	Structure And Function Of The Phenazine Biosyntheti		3e-05
1u1v_A	298	Structure And Function Of Phenazine-Biosynthesis Pr		1e-04
3edn_A	299	Crystal Structure Of The Bacillus Anthracis Phenazi		3e-04

>pdb|4DUN|A Chain A, 1.76a X-Ray Crystal Structure Of A Putative Phenazine Biosynthesis PhzcPHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE (STRAIN 630) Length = 263

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
          ++Y +VD+F    FKGNPA VC+L+     E +Q +A E N+ +T ++ +          
Sbjct: 4  MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKGKG------N 57
Query: 66 FRLRWFTPVAEVSFSFY 82
          + LRWFTP AE+    +
Sbjct: 58 YELRWFTPKAEIDLCGH 74

>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf Family (Enterococcus Faecalis) Length = 262

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 8  YSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFR 67
          Y +VDAF +  FKGNPAAV +LE+   E  +Q +A E N+S+T +  +          + 
Sbjct: 5  YYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVK------EGQSYA 58
Query: 68 LRWFTPVAEV 77
          LRWFTP  E+
Sbjct: 59 LRWFTPEREI 68

>pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The Phenazine Biosynthesis Phzf Enzyme Superfamily Length = 300

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 13/85 (15%)
Query: 5  LVQYSVVDAFTDSAFKGNPAAVC-LLEEDRDE---EWLQAVASEFNISQTCYLTRLTAAD 60
          +V +  VD FT+  F GNP AV   LE D +E   E LQA+A+  N+S+T +L +     
Sbjct: 4  MVPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFK----- 58
Query: 61 SPNPR---FRLRWFTPVAEVSFSFY 82
           P+ +   ++LR FTP +E+ F+ +
Sbjct: 59 -PSDKKYDYKLRIFTPRSELPFAGH 82

>pdb|1QYA|A Chain A, Crystal Structure Of E. Coli Protein Ydde Length = 307

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
          VDAFT   F+GN A V    ++  E  +Q +A E   S+T +L     +D      R+R+
Sbjct: 18 VDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSD-----VRIRY 72
Query: 71 FTPVAEVSFSFY 82
          FTP  EV    +
Sbjct: 73 FTPTVEVPICGH 84

>pdb|1SDJ|A Chain A, X-Ray Structure Of Ydde_ecoli Northeast Structural Genomics Consortium Target Et25 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
          VDAFT   F+GN A V    ++  E   Q +A E   S+T +L     +D      R+R+
Sbjct: 19 VDAFTSQPFRGNSAGVVFPADNLSEAQXQLIARELGHSETAFLLHSDDSD-----VRIRY 73
Query: 71 FTPVAEVSFSFY 82
          FTP  EV    +
Sbjct: 74 FTPTVEVPICGH 85

>pdb|1QY9|A Chain A, Crystal Structure Of E. Coli Se-met Protein Ydde Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
          VDAFT   F+GN A V    ++  E   Q +A E   S+T +L     +D      R+R+
Sbjct: 8  VDAFTSQPFRGNSAGVVFPADNLSEAQXQLIARELGHSETAFLLHSDDSD-----VRIRY 62
Query: 71 FTPVAEVSFSFY 82
          FTP  EV    +
Sbjct: 63 FTPTVEVPICGH 74

>pdb|1U1W|A Chain A, Structure And Function Of Phenazine-biosynthesis Protein Phzf From Pseudomonas Fluorescens 2-79 Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 2   AKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR-LTAAD 60
              +  Y ++DAF     +GNP AV    +D     +Q +A E N+S++ ++ +     D
Sbjct: 18  GSHMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGD 77
Query: 61  SPNPRFRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
           +      +R FTPV E+ F+ +       L G+ + L
Sbjct: 78  A-----LIRIFTPVNELPFAGH------PLLGTAIAL 103

>pdb|1T6K|A Chain A, Crystal Structure Of Phzf From Pseudomonas Fluorescens 2-79 Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 7  QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR-LTAADSPNPR 65
           Y ++DAF     +GNP AV    +D     +Q +A E N+S++ ++ +     D+    
Sbjct: 3  NYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDA---- 58
Query: 66 FRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
            +R FTPV E+ F+ +       L G+ + L
Sbjct: 59 -LIRIFTPVNELPFAGH------PLLGTAIAL 83

>pdb|1XUB|A Chain A, Structure And Function Of The Phenazine Biosynthetic Protein Phzf From Pseudomonas Fluorescens Length = 298

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 2  AKKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR-LTAAD 60
             +  Y ++DAF     +GNP AV    +D     +Q +A E N+S++ ++ +     D
Sbjct: 18 GSHMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGD 77
Query: 61 SPNPRFRLRWFTPVAEVSFS 80
          +      +R FTPV E+ F+
Sbjct: 78 A-----LIRIFTPVNELPFA 92

>pdb|1U1V|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein Phzf From Pseudomonas Fluorescens 2-79 Length = 298

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 7   QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR-LTAADSPNPR 65
            Y ++DAF     +GNP AV    +D      Q +A E N+S++ ++ +     D+    
Sbjct: 23  NYVIIDAFASVPLEGNPVAVFFDADDLPPAQXQRIAREXNLSESTFVLKPRNGGDA---- 78
Query: 66  FRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
             +R FTPV E+ F+ +       L G+ + L
Sbjct: 79  -LIRIFTPVNELPFAGH------PLLGTAIAL 103

>pdb|3EDN|A Chain A, Crystal Structure Of The Bacillus Anthracis Phenazine Biosynthesis Protein, Phzf Family Length = 299

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 12 DAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWF 71
          DAFT+    GNPA + L  +   EE  Q +A +   ++T ++     AD      R R+F
Sbjct: 10 DAFTNKPNXGNPAGIVLDADGLTEEEXQRIAEKVGFNETSFVLSSEVAD-----IRXRYF 64
Query: 72 TP 73
          TP
Sbjct: 65 TP 66
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1s7j_A	262	Phenazine biosynthesis protein PHZF family; bacter	6e-31
3edn_A	299	Phenazine biosynthesis protein, PHZF family; diami	2e-30
4dun_A	263	Putative phenazine biosynthesis PHZC/PHZF protein;	3e-30
1qya_A	307	ORFB, hypothetical protein YDDE; putative phenazin	1e-28
1ym5_A	300	YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i	2e-28
1xub_A	298	Phenazine biosynthesis protein PHZF; biosynthetic	3e-27
1u0k_A	288	Gene product PA4716; sctructural genomics, MCSG, p	7e-27

>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2 Length = 262

 Score =  108 bits (273), Expect = 6e-31
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
            Y +VDAF +  FKGNPAAV +LE+   E  +Q +A E N+S+T +  +          
Sbjct: 3  YPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVK------EGQS 56

Query: 66 FRLRWFTPVAEVSF 79
          + LRWFTP  E+  
Sbjct: 57 YALRWFTPEREIDL 70

>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Length = 299

 Score =  108 bits (272), Expect = 2e-30
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 4  KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPN 63
          K +     DAFT+    GNPA + L  +   EE +Q +A +   ++T ++     AD   
Sbjct: 2  KTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVAD--- 58

Query: 64 PRFRLRWFTPVAEVSF 79
             R+R+FTP  E+  
Sbjct: 59 --IRMRYFTPGYEMDL 72

>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile} Length = 263

 Score =  106 bits (268), Expect = 3e-30
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
          ++Y +VD+F    FKGNPA VC+L+     E +Q +A E N+ +T ++ +          
Sbjct: 4  MEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVK------GKGN 57

Query: 66 FRLRWFTPVAEVSF 79
          + LRWFTP AE+  
Sbjct: 58 YELRWFTPKAEIDL 71

>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Length = 307

 Score =  104 bits (261), Expect = 1e-28
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
           Q   VDAFT   F+GN A V    ++  E  +Q +A E   S+T +L     +D     
Sbjct: 13 PQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSD----- 67

Query: 66 FRLRWFTPVAEVSF 79
           R+R+FTP  EV  
Sbjct: 68 VRIRYFTPTVEVPI 81

>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Length = 300

 Score =  103 bits (259), Expect = 2e-28
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 1  MAKKLVQYSVVDAFTDSAFKGNPAAVC----LLEEDRDEEWLQAVASEFNISQTCYLTRL 56
          M   +  +  VD FT+  F GNP AV     + E +  +E LQA+A+  N+S+T +L + 
Sbjct: 1  MTLMV-PFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFK- 58

Query: 57 TAADSPNPRFRLRWFTPVAEVSF 79
                   ++LR FTP +E+ F
Sbjct: 59 --PSDKKYDYKLRIFTPRSELPF 79

>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Length = 298

 Score =  100 bits (251), Expect = 3e-27
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 4  KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLT-AADSP 62
           +  Y ++DAF     +GNP AV    +D     +Q +A E N+S++ ++ +     D  
Sbjct: 20 HMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGD-- 77

Query: 63 NPRFRLRWFTPVAEVSF 79
               +R FTPV E+ F
Sbjct: 78 ---ALIRIFTPVNELPF 91

>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2 Length = 288

 Score = 98.9 bits (247), Expect = 7e-27
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
           +Y  +D F +    GN  AV       D+  +QA   E    ++ +L            
Sbjct: 5  RRYWQLDVFAERPLTGNGLAVFDDASALDDAAMQAWTRELRQFESIFLLPGDDPR----A 60

Query: 66 FRLRWFTPVAEVSF 79
          FR R FT   E+ F
Sbjct: 61 FRARIFTLEEELPF 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
4dun_A	263	Putative phenazine biosynthesis PHZC/PHZF protein;	99.98
1xub_A	298	Phenazine biosynthesis protein PHZF; biosynthetic	99.97
3edn_A	299	Phenazine biosynthesis protein, PHZF family; diami	99.96
1qya_A	307	ORFB, hypothetical protein YDDE; putative phenazin	99.96
1u0k_A	288	Gene product PA4716; sctructural genomics, MCSG, p	99.96
1ym5_A	300	YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i	99.96
1s7j_A	262	Phenazine biosynthesis protein PHZF family; bacter	99.96
2azp_A	318	Hypothetical protein PA1268; PA1268,APC5861,sulfur	99.9
2gke_A	274	DAP epimerase, diaminopimelate epimerase; enzyme-i	99.87
1tm0_A	350	Proline racemase; structural genomics, alpha-beta	99.78
2otn_A	308	Diaminopimelate epimerase; DAP, lysine ME lanthion	99.75
1w61_A	414	B-cell mitogen; racemase, racemase pyridoxal phosp	99.65
3ejx_A	317	DAP epimerase, diaminopimelate epimerase, chloropl	97.81
3fve_A	290	DAP epimerase, diaminopimelate epimerase; alpha/be	97.6
1ym5_A	300	YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 i	81.8
1qya_A	307	ORFB, hypothetical protein YDDE; putative phenazin	80.81

>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}

Probab=99.98  E-value=1.2e-32  Score=212.36  Aligned_cols=92  Identities=30%  Similarity=0.544  Sum_probs=79.1

Q ss_pred             cceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCch
Q 034019            4 KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYN   83 (106)
Q Consensus         4 ~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHa   83 (106)
                      +.++|++|||||+.+|+|||+|||+++++|++++||+||+|+|+|||+||.++      .++|++|||||..|+|||||+
T Consensus         2 ~~~~~~~vDaFt~~~~~GNp~aVv~~~~~l~~~~mq~iA~e~~~sET~Fv~~~------~~d~~lR~Ftp~~Ev~~CGHa   75 (263)
T 4dun_A            2 NAMEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKG------KGNYELRWFTPKAEIDLCGHA   75 (263)
T ss_dssp             -CEEEEEEEETCSSTTCSEEEEEEEESSCCCHHHHHHHHHHHCSSEEEEEEEE------TTEEEEEEECSSCEESCCHHH
T ss_pred             CcceEEEEEEeeCCCCCCCCEEEEECCCCCCHHHHHHHHHHhCCCeEEEEEeC------CCcEEEEEEeCCcEeccCCcH
Confidence            35899999999999999999999999999999999999999999999999986      358999999999999999999


Q ss_pred             HHH--HHH---Hc--CCeEEEeeec
Q 034019           84 YKL--WMK---LF--GSVLELDDLS  101 (106)
Q Consensus        84 tva--w~~---~~--~~~~~~~~~~  101 (106)
                      |++  |..   +.  +..+.+++.+
T Consensus        76 tl~~a~~l~~~~~~~~~~~~~et~a  100 (263)
T 4dun_A           76 TLAAAYVISNFIDVNVKKIDFFTQS  100 (263)
T ss_dssp             HHHHHHHHHHHTSTTCSEEEEEETT
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEeCC
Confidence            873  222   11  3567777653

>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A

Probab=99.97  E-value=3.1e-31  Score=205.17  Aligned_cols=78  Identities=28%  Similarity=0.480  Sum_probs=72.3

Q ss_pred             cceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCch
Q 034019            4 KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYN   83 (106)
Q Consensus         4 ~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHa   83 (106)
                      ++++|++|||||+++|+|||++||+++++|++++||+||+|+|+|||+||.++.   + .++|++|||||..|+||||||
T Consensus        20 ~~~~~~~vd~Ft~~~~~GNp~aVv~~~~~l~~~~mq~IA~e~~~sEt~Fv~~~~---~-~~d~~lR~Ftp~~E~~~CGha   95 (298)
T 1xub_A           20 HMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPR---N-GGDALIRIFTPVNELPFAGAP   95 (298)
T ss_dssp             -CEEEEEEEETCSSTTSSEEEEEECSGGGSCHHHHHHHHHHHCSSCEEEEECCS---S-SSSEEEEEECSSCEESCCHHH
T ss_pred             eeeEEEEEEeccCCCCCCCcEEEEECCCCCCHHHHHHHHHHhCCceEEEEecCC---C-CCcEEEEEEcCCCCcCcCchH
Confidence            458999999999999999999999999999999999999999999999999862   1 467999999999999999999


Q ss_pred             HH
Q 034019           84 YK   85 (106)
Q Consensus        84 tv   85 (106)
                      |+
T Consensus        96 t~   97 (298)
T 1xub_A           96 LL   97 (298)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}

Probab=99.96  E-value=4.2e-30  Score=198.04  Aligned_cols=94  Identities=23%  Similarity=0.325  Sum_probs=80.7

Q ss_pred             CcceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCc
Q 034019            3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFY   82 (106)
Q Consensus         3 ~~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGH   82 (106)
                      |++++|++|||||+.+++|||+|||+++++|++++||+||+|+|+|||+||.++.     .++|++|||||..|++||||
T Consensus         1 m~~~~~~~vD~Ft~~~~~GNp~aVv~d~~~l~~~~mq~iA~~~~~~et~fv~~~~-----~ad~~~R~FnpgsE~~~CGh   75 (299)
T 3edn_A            1 MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSE-----VADIRMRYFTPGYEMDLCGH   75 (299)
T ss_dssp             CCEEEEEEEEESCSSTTSSEEEEEESCCTTCCHHHHHHHHHHHCSSCEEEEECCS-----SSSEEEEEECSSCEESCCHH
T ss_pred             CCceEEEEEEEeeCCCCCCCCEEEEECCCCCCHHHHHHHHHHhCCCeEEEEecCC-----CCCEEEEEECCCCccccCcc
Confidence            5668999999999999999999999999999999999999999999999999872     36899999999999999999


Q ss_pred             hHH--HHHHH-c-----CCeEEEeeec
Q 034019           83 NYK--LWMKL-F-----GSVLELDDLS  101 (106)
Q Consensus        83 atv--aw~~~-~-----~~~~~~~~~~  101 (106)
                      +|+  ||... .     ++.+.++|.+
T Consensus        76 ~t~~~a~~l~~~g~~~~~~~~~~eT~a  102 (299)
T 3edn_A           76 GTVGTIYALRERGLLEEKASLTIETKA  102 (299)
T ss_dssp             HHHHHHHHHHHTTCSCSCSEEEEEETT
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEcCc
Confidence            986  33321 1     3467777653

>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A

Probab=99.96  E-value=7.3e-30  Score=197.33  Aligned_cols=76  Identities=33%  Similarity=0.464  Sum_probs=69.2

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchH
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNY   84 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHat   84 (106)
                      +++|++|||||+.+++|||++||+++++|++++||+||+|+|+|||+||.|.    + .++|++|||||..|+|||||||
T Consensus        12 ~~~~~~vD~Ft~~~~~GNp~aVv~~~~~l~~~~mq~iA~e~~~set~fv~p~----~-~~d~~~R~Ftp~~E~~~CGh~t   86 (307)
T 1qya_A           12 KPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHS----D-DSDVRIRYFTPTVEVPICGHAT   86 (307)
T ss_dssp             CCEEEEEEETCSSTTCSEEEEEEECCTTCCHHHHHHHHHHHCCSCEEEEECC----S-SSSEEEEEECSSSEECC--CHH
T ss_pred             ceEEEEEEeccCCCCCcceeEEEeCCCCCCHHHHHHHHHHhCCceEEEEEec----C-CCceEEEEECCCCEeCCCchHH
Confidence            4789999999999999999999999999999999999999999999999954    2 3689999999999999999998


Q ss_pred             H
Q 034019           85 K   85 (106)
Q Consensus        85 v   85 (106)
                      +
T Consensus        87 ~   87 (307)
T 1qya_A           87 V   87 (307)
T ss_dssp             H
T ss_pred             H
Confidence            7

>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2

Probab=99.96  E-value=2.1e-29  Score=193.52  Aligned_cols=79  Identities=24%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             CcceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCc
Q 034019            3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFY   82 (106)
Q Consensus         3 ~~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGH   82 (106)
                      |++++|++|||||+.++.|||++||.++++|++++||+||+|+|+|||+||.++.   + .++|++|||||..|++||||
T Consensus         2 ~m~~~~~~vD~Ft~~~~~GNp~~Vv~~~~~l~~~~mq~ia~~~~~set~fv~~~~---~-~~d~~~R~Ftp~~E~~~CGh   77 (288)
T 1u0k_A            2 HMSRRYWQLDVFAERPLTGNGLAVFDDASALDDAAMQAWTRELRQFESIFLLPGD---D-PRAFRARIFTLEEELPFAGH   77 (288)
T ss_dssp             -CCCEEEEEEESCSSTTCSEEEEEESCCTTCCHHHHHHHHHHHCCSEEEEEEECS---C-TTEEEEEEEESSCBCCSCCT
T ss_pred             CceeEEEEEEEecCCCCCCCceEEEeCCCCCCHHHHHHHHHHhCCCeEEEEecCC---C-CCcEEEEEECCCCeeCcCch
Confidence            3468999999999999999999999998899999999999999999999999862   2 57899999999999999999


Q ss_pred             hHH
Q 034019           83 NYK   85 (106)
Q Consensus        83 atv   85 (106)
                      +|+
T Consensus        78 ~t~   80 (288)
T 1u0k_A           78 PLL   80 (288)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-29  Score=196.43  Aligned_cols=81  Identities=36%  Similarity=0.484  Sum_probs=72.2

Q ss_pred             CCCcceeEEEEeeccCCCCCCCeeEEEE----cCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCc
Q 034019            1 MAKKLVQYSVVDAFTDSAFKGNPAAVCL----LEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAE   76 (106)
Q Consensus         1 m~~~~~~~~~vdvFt~~~f~GNPaaVv~----~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~E   76 (106)
                      |.|. ++|++||+||+.+++|||++||.    ++++|++++||+||+|+|+|||+||.++.   ++.++|++|||||..|
T Consensus         1 ~~~~-~~~~~vd~Ft~~~~~GNp~~Vv~~~~~d~~~l~~~~mq~iA~~~~~set~fv~~~~---~~~~d~~lR~Ftp~~E   76 (300)
T 1ym5_A            1 MTLM-VPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFKPS---DKKYDYKLRIFTPRSE   76 (300)
T ss_dssp             -CEE-EEEEEEEETCSSTTSSEEEEEEECTTSCGGGSCHHHHHHHHHHHTSSCEEEEECCS---STTCSEEEEEECSSCE
T ss_pred             CCcc-ceEEEEEeccCCCCCCCCeEEEEeccCCCCCCCHHHHHHHHHHhCCCceEEEecCC---CCCCcEEEEEEcCCCC
Confidence            6655 89999999999999999999994    56789999999999999999999999862   2346899999999999


Q ss_pred             cCCCCchHH
Q 034019           77 VSFSFYNYK   85 (106)
Q Consensus        77 i~~cGHatv   85 (106)
                      +|||||||+
T Consensus        77 ~~~CGh~t~   85 (300)
T 1ym5_A           77 LPFAGHPTI   85 (300)
T ss_dssp             ESCCHHHHH
T ss_pred             cCcCCCcHH
Confidence            999999987

>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2

Probab=99.96  E-value=3.4e-29  Score=190.44  Aligned_cols=91  Identities=34%  Similarity=0.507  Sum_probs=77.9

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchH
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNY   84 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHat   84 (106)
                      +++|++|||||+.++.|||++||++++++++++||+||+|+|+|||+||.++      .++|++|||||..|++||||||
T Consensus         2 ~~~~~~vd~Ft~~~~~GNp~~Vv~~~~~l~~~~~q~ia~~~~~set~fv~~~------~~d~~~R~Ftp~~E~~~CGh~t   75 (262)
T 1s7j_A            2 SYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKE------GQSYALRWFTPEREIDLCGHAT   75 (262)
T ss_dssp             EEEEEEEEETCSSTTSSEEEEEEECSSCCCHHHHHHHHHHHCCSCEEEEEEE------TTEEEEEEECSSSEESCCHHHH
T ss_pred             cceEEEEEeccCCCCCCCCeEEEECCCCCCHHHHHHHHHHhCCCEEEEEEcC------CCCEEEEEECCCCccCcCchHH
Confidence            4789999999999999999999999999999999999999999999999975      2579999999999999999998


Q ss_pred             HH--HHH---Hc--CCeEEEeeec
Q 034019           85 KL--WMK---LF--GSVLELDDLS  101 (106)
Q Consensus        85 va--w~~---~~--~~~~~~~~~~  101 (106)
                      ++  |..   +.  +..+.+++.+
T Consensus        76 ~~~a~~l~~~g~~~~~~~~~et~~   99 (262)
T 1s7j_A           76 LATAFVLFNYYSVAEETLHFTSQS   99 (262)
T ss_dssp             HHHHHHHHHHSCCCSSEEEEEETT
T ss_pred             HHHHHHHHHhcCCCCCeEEEEeCc
Confidence            73  322   11  2456676653

>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}

Probab=99.90  E-value=4.6e-24  Score=165.51  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCC-CCC----HHHHHHHHHHhC------Cce--------eEEEecCCCCCCCCCc
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEE-DRD----EEWLQAVASEFN------ISQ--------TCYLTRLTAADSPNPR   65 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~----~~~mq~IA~e~n------~sE--------TaFv~~~~~~~~~~~~   65 (106)
                      ..+|++||+|+    +|||++||+++. +|+    +++||+||+|+|      +||        |+||.++.   ++.++
T Consensus         3 ~~~~~~vd~ft----~GNp~~Vv~~~~~~l~~~~~~~~mq~ia~e~~~~r~~l~sEprg~~~~~t~fl~~p~---~~~ad   75 (318)
T 2azp_A            3 MQRIRIIDSHT----GGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPV---DPEAC   75 (318)
T ss_dssp             CEEEEEEEEEE----TTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEECCS---STTSS
T ss_pred             ccEEEEEEecC----CCcceEEEeCCCCCCCCCCHHHHHHHHHHhhchhhheeeeccCCCCCceEEEEECCC---CCCCc
Confidence            35799999999    999999999987 888    999999999999      999        99999873   23578


Q ss_pred             eEEEEecCCCccCCCCchHH
Q 034019           66 FRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        66 ~~vR~FTp~~Ei~~cGHatv   85 (106)
                      |++|||||.+|++||||+|+
T Consensus        76 ~~~r~Ftp~gE~~~CGh~t~   95 (318)
T 2azp_A           76 AGVIFFNNSGYLGMCGHGTI   95 (318)
T ss_dssp             EEEEEECSSSBCSCCHHHHH
T ss_pred             EEEEEEcCCCccCcCccHHH
Confidence            99999999999999999987

>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A

Probab=99.87  E-value=1.1e-22  Score=154.69  Aligned_cols=85  Identities=16%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             eccCCCCCCCeeEEEEcCC----CCCHHHHHHHHHH---hCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchH
Q 034019           13 AFTDSAFKGNPAAVCLLEE----DRDEEWLQAVASE---FNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNY   84 (106)
Q Consensus        13 vFt~~~f~GNPaaVv~~~~----~l~~~~mq~IA~e---~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHat   84 (106)
                      .|++.++.|||+ ||+++.    ++++++||+||+|   +|+|||+||.++.   ++.++|++|||||. .|++||||+|
T Consensus         2 ~Ftk~~~~GNp~-Vv~d~~~~~~~l~~~~~q~ia~e~~G~g~~et~fv~~~~---~~~~d~~~r~F~pdG~E~~~CGh~t   77 (274)
T 2gke_A            2 QFSKMHGLGNDF-VVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPY---DPELDFHYRIFNADGSEVSQCGNGA   77 (274)
T ss_dssp             EEEEEEETTEEE-EEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCS---STTSSEEEEEEETTSCEESCCHHHH
T ss_pred             eEEEEecCCCCE-EEECCCcccCCCCHHHHHHhhCcCCCcccceEEEECCCC---CCCCCEEEEEECCCCChHHhCcChH
Confidence            699999999999 998876    7999999999999   9999999999863   23568999999999 9999999998


Q ss_pred             HH--HHHH-c----CCeEEEeeec
Q 034019           85 KL--WMKL-F----GSVLELDDLS  101 (106)
Q Consensus        85 va--w~~~-~----~~~~~~~~~~  101 (106)
                      ++  |... .    ...+.+++.+
T Consensus        78 ~~~a~~l~~~g~~~~~~~~~et~a  101 (274)
T 2gke_A           78 RCFARFVTLKGLTNKKDISVSTQK  101 (274)
T ss_dssp             HHHHHHHHHTTSCCCSEEEEECSS
T ss_pred             HHHHHHHHHhCCCCCceEEEEeCC
Confidence            73  2221 1    2356676653

>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3

Probab=99.78  E-value=1.3e-19  Score=143.36  Aligned_cols=74  Identities=12%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCC-CCCHHHHHHHHHHhC-Cce----------------eEEEecCCCCCCCCCce
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEE-DRDEEWLQAVASEFN-ISQ----------------TCYLTRLTAADSPNPRF   66 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~~~~mq~IA~e~n-~sE----------------TaFv~~~~~~~~~~~~~   66 (106)
                      +..|++||+||    +|||++||.++. +|+.++||++|+++| +||                |+||.++.   ++.+++
T Consensus         4 ~~~~~~vd~~t----~Gnp~~vv~~~~~~l~~~~m~~~~~~~~~~~~~r~~l~~eprG~~g~~g~fv~~p~---~~~aD~   76 (350)
T 1tm0_A            4 TKVIHIVGCHA----EGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPK---DPRAQM   76 (350)
T ss_dssp             SCCEEEEEEEE----TTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEECCC---SSSCSE
T ss_pred             ccEEEEEEeCC----CCcceEEEeCCcCCCCchhHHHHHHHHHhhhHHHHHhhcCCCCCCCccEEEEeCCC---CCCCCE
Confidence            46799999998    999999999874 899999999999999 887                99999873   345789


Q ss_pred             EEEEecCCCccCCCCchHH
Q 034019           67 RLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        67 ~vR~FTp~~Ei~~cGHatv   85 (106)
                      ++|||+|.+|++||||+++
T Consensus        77 ~~rifn~dge~~mCGhgt~   95 (350)
T 1tm0_A           77 GFIIMEPADTPPMSGSNSI   95 (350)
T ss_dssp             EEECCCSSCCCSCCHHHHH
T ss_pred             EEEEEECCCccccccchHH
Confidence            9999999999999999986

>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}

Probab=99.75  E-value=1.3e-18  Score=134.98  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=62.4

Q ss_pred             eccCCCCCCCeeEEEEcCCC-----CCHHHHH-HHHHH-h--CCceeEEEecCCCCCCCCCceEEEEecCCC-ccCCCCc
Q 034019           13 AFTDSAFKGNPAAVCLLEED-----RDEEWLQ-AVASE-F--NISQTCYLTRLTAADSPNPRFRLRWFTPVA-EVSFSFY   82 (106)
Q Consensus        13 vFt~~~f~GNPaaVv~~~~~-----l~~~~mq-~IA~e-~--n~sETaFv~~~~~~~~~~~~~~vR~FTp~~-Ei~~cGH   82 (106)
                      .|++.++.|||+ ||+++.+     +++++|| +||+| +  |.++|.|+.|+     +.++|++|||||.+ |++||||
T Consensus        25 ~Ftk~~~~GN~~-vVid~~~~~~~~l~~~~mq~~ia~e~~Gig~d~~~~v~p~-----~~ad~~~R~FtpdgsE~~~CGh   98 (308)
T 2otn_A           25 SFTKMHGLGNSY-IYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-----DVAPVKMRMFNNDGSEGKSCGN   98 (308)
T ss_dssp             EEEEEEETTEEE-EEEETTTCCCCGGGHHHHHHHHHCTTTSCCCSEEEEEECC-----SSSSEEEEEEETTSCEECCTTT
T ss_pred             EEEEecCCCCCE-EEEeCCCcccccCCHHHHHHHHhCCCCCccceEEEEeccC-----CCCcEEEEEEcCCCChHHhCcC
Confidence            799999999999 6666544     7899999 99999 6  45666666542     24689999999998 9999999


Q ss_pred             hHHH--HHHH-c----CCeEEEeeec
Q 034019           83 NYKL--WMKL-F----GSVLELDDLS  101 (106)
Q Consensus        83 atva--w~~~-~----~~~~~~~~~~  101 (106)
                      ||++  |... .    ...+.+++.+
T Consensus        99 ~t~~~a~~l~~~g~~~~~~~~~eT~a  124 (308)
T 2otn_A           99 GLRCVAKYAYEHKLVEDTVFTIETLA  124 (308)
T ss_dssp             THHHHHHHHHHTTSCSSSEEEEEETT
T ss_pred             hHHHHHHHHHHcCCCCCCeEEEEeCC
Confidence            9873  2221 1    2457776653

>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A

Probab=99.65  E-value=3.1e-16  Score=127.57  Aligned_cols=74  Identities=9%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcC-CCC---C-HHHHHHHHHHhCC------c--------eeEEEecCCCCCCCCCc
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLE-EDR---D-EEWLQAVASEFNI------S--------QTCYLTRLTAADSPNPR   65 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~-~~l---~-~~~mq~IA~e~n~------s--------ETaFv~~~~~~~~~~~~   65 (106)
                      +..|.++|+|+    .|||++||++. .+|   + .++||.||+|++.      +        ||+||.++.   ++.++
T Consensus        43 ~~~~~~vd~h~----~GNp~~VV~d~~~~l~~~t~~e~~~~~~~e~~~~r~~l~~EprG~~g~~g~fl~pp~---~~~AD  115 (414)
T 1w61_A           43 KKSFTCIDMHT----EGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLFDPI---EEGAD  115 (414)
T ss_dssp             CEEEEEEEEEE----TTEEEEEEEECCCCCCCSSHHHHHHHHHHHCHHHHHHHHSBTTSCTTCEEEEEECCC---STTCS
T ss_pred             ccEEEEEEeCC----CCCCEEEEeCCCCCCCCCCHHHHHHHHHhccHHHHHHhhcccCCCcceeEEEEECCC---CCCCC
Confidence            46899999997    99999999876 233   3 3688999999884      2        899999873   34578


Q ss_pred             eEEEEecCCCccCCCCchHH
Q 034019           66 FRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        66 ~~vR~FTp~~Ei~~cGHatv   85 (106)
                      +++|||||.+|+|||||+|+
T Consensus       116 ~~vRiFnpdGe~~mCGHgTi  135 (414)
T 1w61_A          116 LGIVFMDTGGYLNMCGHNSI  135 (414)
T ss_dssp             EEEEEEESSCCCSCCHHHHH
T ss_pred             EEEEEECCCCchhcCcCcHH
Confidence            99999999999999999987

>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*

Probab=97.81  E-value=3.7e-05  Score=60.86  Aligned_cols=68  Identities=10%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             ccCCCCCCCeeEEEEcCC----CCCHHHHHHHHHH---hCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH
Q 034019           14 FTDSAFKGNPAAVCLLEE----DRDEEWLQAVASE---FNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK   85 (106)
Q Consensus        14 Ft~~~f~GNPaaVv~~~~----~l~~~~mq~IA~e---~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv   85 (106)
                      |++=.-.||=--|+...+    .+++++.++|+.+   .|..-..||.++    ...+++++|||+|. .|.++|||++.
T Consensus        29 F~KmhG~GNDFvviD~~~~~~~~~~~~~~~~lcdR~~GIGaDGll~v~~~----~~~aD~~mr~FN~DGSEaemCGNGtR  104 (317)
T 3ejx_A           29 FVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPG----VNGTDYAMRIFNSDGSEPEMCGNGVR  104 (317)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSCCSEEEEEEEC----STTCSEEEEEEETTSCCCSCCHHHHH
T ss_pred             EEEEcCCCCcEEEEeCCCccccCCCHHHHHHhhccCCCCCCCeEEEEcCC----CCCCCEEEEEEcCCCCeeccCccHHH
Confidence            555556788777665432    3578888999865   467788899876    23578999999998 79999999975

>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}

Probab=97.60  E-value=0.00024  Score=55.24  Aligned_cols=87  Identities=7%  Similarity=0.004  Sum_probs=54.7

Q ss_pred             ccCCCCCCCeeEEEEcCC---CCCHHHHHHHHHH-hC--CceeEEEecCCC-----------CCCCCCceEEEEecCC-C
Q 034019           14 FTDSAFKGNPAAVCLLEE---DRDEEWLQAVASE-FN--ISQTCYLTRLTA-----------ADSPNPRFRLRWFTPV-A   75 (106)
Q Consensus        14 Ft~~~f~GNPaaVv~~~~---~l~~~~mq~IA~e-~n--~sETaFv~~~~~-----------~~~~~~~~~vR~FTp~-~   75 (106)
                      |++=.-.||==-|+...+   .+++++-++|+.+ ++  --=-.+|.++..           +..+.+++++|||+|. .
T Consensus         4 F~K~hG~GNDFvvid~~~~~~~~~~~~~~~lcdR~~GIGaDGli~v~~~~~~~~~~~~~~~~~~~~~ad~~mr~fN~DGS   83 (290)
T 3fve_A            4 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNADGS   83 (290)
T ss_dssp             EEEEESSSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETTSC
T ss_pred             EEEEEeCCCcEEEEECCCCcCCCCHHHHHHhcccCCCCCCCEEEEEeccccccccccccccccCCCCCCEEEEEECCCCC
Confidence            444455677666555432   3578888888865 43  445568876420           0123478999999997 6


Q ss_pred             ccCCCCchHH--H-HHHHc----CCeEEEeee
Q 034019           76 EVSFSFYNYK--L-WMKLF----GSVLELDDL  100 (106)
Q Consensus        76 Ei~~cGHatv--a-w~~~~----~~~~~~~~~  100 (106)
                      |+++|||++.  | |+...    .+.+.++|+
T Consensus        84 EaemCGNg~Rc~a~~l~~~g~~~~~~~~ieT~  115 (290)
T 3fve_A           84 AAQMCGNGVRVFAHYLRASGLEVRDEFVVGSL  115 (290)
T ss_dssp             BCCTTCTTHHHHHHHHHHTTSCCCSEEEEECT
T ss_pred             ccccccchHHHHHHHHHHhCCCCCceEEEEeC
Confidence            9999999975  3 33222    235666654

>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}

Probab=81.80  E-value=6  Score=29.61  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             CCCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecC--C-CccCCCCchH
Q 034019           19 FKGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTP--V-AEVSFSFYNY   84 (106)
Q Consensus        19 f~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp--~-~Ei~~cGHat   84 (106)
                      ..|||-.||..++       .++-+.+.++.++.+..-+.+..+... +.+..++++|.|.|  . .|=|-||-+.
T Consensus       157 ~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~gv~v~~~~~~-~~~~~~~~~R~f~p~~Gv~EdpatGSaa  231 (300)
T 1ym5_A          157 HTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKE-AAIKNSYEMRAFAPVINVYEDPVCGSGS  231 (300)
T ss_dssp             ESSSEEEEEECSCHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTT-CSSTTEEEEEEEEGGGTEEEESSCHHHH
T ss_pred             EcCCCEEEEEECCHHHHHhCCCCHHHHHHHHhhcCCcEEEEEEecCC-CCCCceEEEEecccccCCCCCCcchHHH
Confidence            3699999988764       224566666766665433332222210 01245799999999  3 6999999874

>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A

Probab=80.81  E-value=3.9  Score=30.67  Aligned_cols=62  Identities=15%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             CCCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecC--C-CccCCCCchH
Q 034019           19 FKGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTP--V-AEVSFSFYNY   84 (106)
Q Consensus        19 f~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp--~-~Ei~~cGHat   84 (106)
                      ..|||-.||..++       .++-+.+.++.++.|.. -+.+....   .+..++++|.|.|  . .|=|-||-++
T Consensus       168 ~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~-~v~v~~~~---~~~~~~~~R~f~p~~Gv~EdpacGSaa  239 (307)
T 1qya_A          168 TTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCN-GFFPFQIR---PGKNETDGRMFSPAIGIVEDPVTGNAN  239 (307)
T ss_dssp             ESSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTCC-CEEEEEEC---TTSSEEEECEEEGGGTEEEESSCHHHH
T ss_pred             eCCCCEEEEEECCHHHHhhCCCCHHHHHHHHhhcCCc-EEEEEEEc---CCCCeEEEEecCCcCCCCCCCCcccch
Confidence            3699999998764       22557777787778863 33333210   1235799999999  3 6999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1qy9a1	127	d.21.1.2 (A:3-129) Hypothetical protein YddE {Esch	8e-21
d1s7ja_	260	d.21.1.2 (A:) Hypothetical protein EF0119 {Enteroc	2e-20
d1xuba1	128	d.21.1.2 (A:1-128) Phenazine biosynthesis protein	8e-20
d1u0ka1	129	d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Ps	6e-18

>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein YddE
species: Escherichia coli [TaxId: 562]

 Score = 78.5 bits (193), Expect = 8e-21
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLR 69
           VDAFT   F+GN A V    ++  E  +Q +A E   S+T +L       S +   R+R
Sbjct: 5  HVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLH-----SDDSDVRIR 59

Query: 70 WFTPVAEVSFS 80
          +FTP  EV   
Sbjct: 60 YFTPTVEVPIC 70

>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]} Length = 260

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

 Score = 80.7 bits (198), Expect = 2e-20
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 6  VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
            Y +VDAF +  FKGNPAAV +LE+   E  +Q +A E N+S+T +  +          
Sbjct: 3  YPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVK------EGQS 56

Query: 66 FRLRWFTPVAEVSFS 80
          + LRWFTP  E+   
Sbjct: 57 YALRWFTPEREIDLC 71

>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 128

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Phenazine biosynthesis protein PhzF
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 75.8 bits (186), Expect = 8e-20
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 7  QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRF 66
           Y ++DAF     +GNP AV    +D     +Q +A E N+S++ ++ +           
Sbjct: 3  NYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLK----PRNGGDA 58

Query: 67 RLRWFTPVAEVSF 79
           +R FTPV E+ F
Sbjct: 59 LIRIFTPVNELPF 71

>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein PA4716
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 71.2 bits (174), Expect = 6e-18
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 8  YSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFR 67
          Y  +D F +    GN  AV       D+  +QA   E    ++ +L            FR
Sbjct: 4  YWQLDVFAERPLTGNGLAVFDDASALDDAAMQAWTRELRQFESIFLLP----GDDPRAFR 59

Query: 68 LRWFTPVAEVSF 79
           R FT   E+ F
Sbjct: 60 ARIFTLEEELPF 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1u0ka1	129	Hypothetical protein PA4716 {Pseudomonas aeruginos	100.0
d1xuba1	128	Phenazine biosynthesis protein PhzF {Pseudomonas f	100.0
d1qy9a1	127	Hypothetical protein YddE {Escherichia coli [TaxId	100.0
d1s7ja_	260	Hypothetical protein EF0119 {Enterococcus faecalis	100.0
d1tm0a_	332	Proline racemase {Brucella melitensis [TaxId: 2945	96.51
d2gkea1	130	Diaminopimelate epimerase {Haemophilus influenzae	96.18
d1qy9a2	168	Hypothetical protein YddE {Escherichia coli [TaxId	93.25

>d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein PA4716
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.9e-38  Score=221.80  Aligned_cols=77  Identities=25%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             eeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHH
Q 034019            6 VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus         6 ~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatv   85 (106)
                      .+|++||||++++++|||+|||+++++|++++||+||+|+|+|||+||.|++    +..+|+||||||.+|||||||+|+
T Consensus         2 ~r~~~vdaFt~~~~~GNpaaVv~~~~~l~~~~mq~IA~e~n~sET~Fv~~~~----~~~~~~vR~FTP~~Ev~~cGH~Tl   77 (129)
T d1u0ka1           2 RRYWQLDVFAERPLTGNGLAVFDDASALDDAAMQAWTRELRQFESIFLLPGD----DPRAFRARIFTLEEELPFAGHPLL   77 (129)
T ss_dssp             CEEEEEEESCSSTTCSEEEEEESCCTTCCHHHHHHHHHHHCCSEEEEEEECS----CTTEEEEEEEESSCBCCSCCTHHH
T ss_pred             ceEEEEEeccCCCCCcceEEEEECCcCCCHHHHHHHHHHhCCceeEEEecCC----CCCceEEEEEeccccccccccHHH
Confidence            5799999999999999999999999999999999999999999999999872    346799999999999999999998


Q ss_pred             H
Q 034019           86 L   86 (106)
Q Consensus        86 a   86 (106)
                      +
T Consensus        78 a   78 (129)
T d1u0ka1          78 G   78 (129)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Phenazine biosynthesis protein PhzF
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=2e-38  Score=222.49  Aligned_cols=92  Identities=26%  Similarity=0.344  Sum_probs=78.7

Q ss_pred             eeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHH
Q 034019            6 VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYK   85 (106)
Q Consensus         6 ~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatv   85 (106)
                      ++|++|||||+++++|||+|||+++++|++++||+||+|+|+|||+||.++.    +.++|+||||||..|||||||+|+
T Consensus         2 ~~~~~vdaFt~~~~~GNpaaVv~~~~~L~~~~mq~IA~e~~~sETaFv~~~~----~~~~~~vR~FtP~~Ev~~cGH~tl   77 (128)
T d1xuba1           2 HNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPR----NGGDALIRIFTPVNELPFAGAPLL   77 (128)
T ss_dssp             EEEEEEEETCSSTTSSEEEEEECSGGGSCHHHHHHHHHHHCSSCEEEEECCS----SSSSEEEEEECSSCEESCCHHHHH
T ss_pred             CceEEEeEccCCCCCcceeEEEECCCCCCHHHHHHHHHHhCCCcEEEEecCC----CCCceEEEEEeccccccccccHHH
Confidence            5799999999999999999999999999999999999999999999998762    346799999999999999999998


Q ss_pred             H--HHHHc---CCeEEEeeec
Q 034019           86 L--WMKLF---GSVLELDDLS  101 (106)
Q Consensus        86 a--w~~~~---~~~~~~~~~~  101 (106)
                      +  |....   ...+.+++.+
T Consensus        78 aaa~~l~~~~~~~~~~~~t~a   98 (128)
T d1xuba1          78 GTAIALGAHTDNHRLYLETQM   98 (128)
T ss_dssp             HHHHHHHTTCCCSEEEEEETT
T ss_pred             HHHHHHHhccCCceEEEEeCC
Confidence            4  33222   4556666543

>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein YddE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-38  Score=219.27  Aligned_cols=75  Identities=33%  Similarity=0.480  Sum_probs=70.9

Q ss_pred             eEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchHHH
Q 034019            7 QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNYKL   86 (106)
Q Consensus         7 ~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHatva   86 (106)
                      ++++|||||+++++|||+|||+++++|++++||+||+|+|+|||+||.+++     .++|+||||||..||+||||+|+|
T Consensus         2 ~i~~VdaFt~~~~~GNpa~Vv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~-----~~~~~iR~FTP~~Ev~~cGHaTLA   76 (127)
T d1qy9a1           2 QVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSD-----DSDVRIRYFTPTVEVPICGHATVA   76 (127)
T ss_dssp             EEEEEEESCSSTTCSEEEEEEECCTTCCHHHHHHHHHHHCCSCEEEEECCS-----SSSEEEEEECSSCEESCCHHHHHH
T ss_pred             ceEEEEECCCCCCCcceEEEEECCCCCCHHHHHHHHHHhCCceEEEEecCC-----CCcEEEEEEeccccccccccHHHH
Confidence            589999999999999999999999999999999999999999999999872     467999999999999999999984

>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein EF0119
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=9e-38  Score=234.39  Aligned_cols=76  Identities=38%  Similarity=0.576  Sum_probs=72.2

Q ss_pred             ceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchH
Q 034019            5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNY   84 (106)
Q Consensus         5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHat   84 (106)
                      +++|++|||||+++|+|||||||+++++|++++||+||+|+|+|||+||.++      ..+|+||||||.+|||||||+|
T Consensus         2 ~~~~~~vDvFt~~~~~GNp~aVv~~~~~l~~~~mq~IA~e~n~sET~Fv~~~------~~~~~vR~FTp~~EvpfcGH~T   75 (260)
T d1s7ja_           2 SYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKE------GQSYALRWFTPEREIDLCGHAT   75 (260)
T ss_dssp             EEEEEEEEETCSSTTSSEEEEEEECSSCCCHHHHHHHHHHHCCSCEEEEEEE------TTEEEEEEECSSSEESCCHHHH
T ss_pred             CCCEEEEEeccCCCCCCceeEEEECCCCCCHHHHHHHHHHhCCCceEEEccc------cccceEEEEecccccccccchh
Confidence            4899999999999999999999999999999999999999999999999986      3579999999999999999999


Q ss_pred             HH
Q 034019           85 KL   86 (106)
Q Consensus        85 va   86 (106)
                      ++
T Consensus        76 la   77 (260)
T d1s7ja_          76 LA   77 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            83

>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId: 29459]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: Proline racemase
domain: Proline racemase
species: Brucella melitensis [TaxId: 29459]

Probab=96.51  E-value=0.0065  Score=46.29  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             eEEEEeeccCCCCCCCeeEEEEcCC-CC---C-HHHHHHHHHH-------hCCc------eeEEEecCCCCCCCCCceEE
Q 034019            7 QYSVVDAFTDSAFKGNPAAVCLLEE-DR---D-EEWLQAVASE-------FNIS------QTCYLTRLTAADSPNPRFRL   68 (106)
Q Consensus         7 ~~~~vdvFt~~~f~GNPaaVv~~~~-~l---~-~~~mq~IA~e-------~n~s------ETaFv~~~~~~~~~~~~~~v   68 (106)
                      .+.+||+    ...|+|.=||...- .+   + .++++-+++.       ++=|      --+++.||.   ++.+++.+
T Consensus         6 ~i~~id~----Ht~GEp~RvI~~G~p~l~G~t~~ek~~~~~~~D~lR~~Lm~EPRGh~~M~gall~pp~---~~~ad~Gv   78 (332)
T d1tm0a_           6 VIHIVGC----HAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPK---DPRAQMGF   78 (332)
T ss_dssp             CEEEEEE----EETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEECCC---SSSCSEEE
T ss_pred             eEEEEeC----CCCCCCeEEEEeCCCCCCCCCHHHHHHHHHhhhHHHHHHhcCCCCCCceEEEEEeCCC---CCCCCEEE
Confidence            3667776    56899999997432 12   3 3445444322       2323      568999884   56789999


Q ss_pred             EEecCCCccCCCCchHH
Q 034019           69 RWFTPVAEVSFSFYNYK   85 (106)
Q Consensus        69 R~FTp~~Ei~~cGHatv   85 (106)
                      -|+-+.+-.++|||+|+
T Consensus        79 if~~~~gy~~MCGh~tI   95 (332)
T d1tm0a_          79 IIMEPADTPPMSGSNSI   95 (332)
T ss_dssp             ECCCSSCCCSCCHHHHH
T ss_pred             EEEccCccCCCccchHH
Confidence            99999999999999987

>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: Diaminopimelate epimerase
domain: Diaminopimelate epimerase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.012  Score=38.94  Aligned_cols=79  Identities=16%  Similarity=0.022  Sum_probs=52.9

Q ss_pred             CCCCeeEEEEcC---CCCCHHHHHHHHH-Hh--CCceeEEEecCCCCCCCCCceEEEEecCCC-ccCCCCchH--HHHHH
Q 034019           19 FKGNPAAVCLLE---EDRDEEWLQAVAS-EF--NISQTCYLTRLTAADSPNPRFRLRWFTPVA-EVSFSFYNY--KLWMK   89 (106)
Q Consensus        19 f~GNPaaVv~~~---~~l~~~~mq~IA~-e~--n~sETaFv~~~~~~~~~~~~~~vR~FTp~~-Ei~~cGHat--vaw~~   89 (106)
                      -.||---|+...   -.+++++.++|+. ++  +.---.++.++.   ...+++++|||.|.+ |..+||.++  +||..
T Consensus         8 g~GNDFviiD~~~~~~~~~~~~i~~i~~r~~giG~Dgli~i~~~~---~~~~d~~~~ifN~DGS~Ae~CGNG~RCva~~l   84 (130)
T d2gkea1           8 GLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPY---DPELDFHYRIFNADGSEVSQCGNGARCFARFV   84 (130)
T ss_dssp             ETTEEEEEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCS---STTSSEEEEEEETTSCEESCCHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCcCCCCHHHHHHHhhcccCCCCceEEEEeccc---ccCcceEEEEEecCCcHhhhcccHHHHHHHHH
Confidence            456666666431   2467888889985 43  445566887763   345789999999985 889999996  45443


Q ss_pred             Hc-----CCeEEEeee
Q 034019           90 LF-----GSVLELDDL  100 (106)
Q Consensus        90 ~~-----~~~~~~~~~  100 (106)
                      ..     ++.+.+.|.
T Consensus        85 ~~~~~~~~~~~~i~T~  100 (130)
T d2gkea1          85 TLKGLTNKKDISVSTQ  100 (130)
T ss_dssp             HHTTSCCCSEEEEECS
T ss_pred             HHcCCccCccEEEEEC
Confidence            21     346677664

>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Diaminopimelate epimerase-like
superfamily: Diaminopimelate epimerase-like
family: PhzC/PhzF-like
domain: Hypothetical protein YddE
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.17  Score=33.66  Aligned_cols=61  Identities=15%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             CCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCC---ccCCCCchH
Q 034019           20 KGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVA---EVSFSFYNY   84 (106)
Q Consensus        20 ~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~---Ei~~cGHat   84 (106)
                      .|||-.||...+       .++.+.+.++.++.|. ..+++.-..   ....+++.|.|.|..   |=|-||-+.
T Consensus        30 ~G~~~~~v~v~~~~~l~~~~pd~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~R~F~p~~Gi~EDpaTGsaa  100 (168)
T d1qy9a2          30 TGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGC-NGFFPFQIR---PGKNETDGRMFSPAIGIVEDPVTGNAN  100 (168)
T ss_dssp             SSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTC-CCEEEEEEC---TTSSEEEECEEEGGGTEEEESCCHHHH
T ss_pred             cCCCeEEEEECCHHHhhhcCCCHHHHHhhhhccCc-cEEEEEEec---CCCCeEEEEeccCcCcccccccchhhH
Confidence            699999998764       2378889999999997 445554331   234579999999974   889999874