Citrus Sinensis ID: 034069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPAD
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEccccccccEEEEccEEEEEEEEEEccccccccEEEEEEEEEcccccEEEEEEcccccEEEcEEEccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHcccccEEEEccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
msdeehhfeskadagasktfpqqagtirkngyivikgrpckvvevstsktgkhghakchfvgidifngkkledivpsshncdvphvtrtdyqlidisedgfpad
Flexible Loop (DISEMBL)
msdeehhfeskadagasktfpqqagtirkngyivikGRPCKVVEVStsktgkhghakchFVGIDIFNGKKLEDIVPSSHncdvphvtrtdyqlidisedgfpad
Low Complexity Region (SEG)
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPAD
Disordered region (IsUnstruct)
*************************TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI********
Disordered Region (DISOPRED)
******H***********TFPQQAGTIRKNGYIVIKGRPCKVVEVST*****HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFP**
Disordered Region (DISEMBL)
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPAD
Disordered Region (DISPRO)
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q9AXQ5	160	Eukaryotic translation in	N/A	no	0.971	0.631	0.980	3e-54
P56335	160	Eukaryotic translation in	N/A	no	0.971	0.631	0.970	7e-54
Q9AXJ4	160	Eukaryotic translation in	N/A	no	0.971	0.631	0.970	2e-53
Q9AXQ3	160	Eukaryotic translation in	N/A	no	0.971	0.631	0.960	4e-53
P56333	160	Eukaryotic translation in	N/A	no	0.971	0.631	0.960	6e-53
Q9AXQ4	159	Eukaryotic translation in	N/A	no	0.971	0.635	0.950	2e-52
P56336	159	Eukaryotic translation in	N/A	no	0.971	0.635	0.940	1e-51
Q945F4	159	Eukaryotic translation in	N/A	no	0.971	0.635	0.940	1e-51
P24922	159	Eukaryotic translation in	N/A	no	0.971	0.635	0.940	2e-51
P69040	159	Eukaryotic translation in	N/A	no	0.971	0.635	0.940	3e-51

>sp|Q9AXQ5|IF5A2_SOLLC Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.
Solanum lycopersicum (taxid: 4081)

>sp|P56335|IF5A3_SOLTU Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1

 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2

 Score =  207 bits (526), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           VGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Manihot esculenta (taxid: 3983)

>sp|Q9AXQ3|IF5A4_SOLLC Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 98/101 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFN KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum lycopersicum (taxid: 4081)

>sp|P56333|IF5A1_SOLTU Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|Q9AXQ4|IF5A3_SOLLC Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/101 (95%), Positives = 97/101 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum lycopersicum (taxid: 4081)

>sp|P56336|IF5A4_SOLTU Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 97/101 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1

 Score =  201 bits (510), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 96/101 (95%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFE  ADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Medicago sativa (taxid: 3879)

>sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 97/101 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P69040|IF5A1_TOBAC Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 97/101 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
350536449	160	eukaryotic translation initiation factor	0.971	0.631	0.980	1e-52
413968540	160	eukaryotic initiation factor 5A3-like pr	0.971	0.631	0.970	2e-52
333108555	159	eukaryotic translation initiation factor	0.971	0.635	0.980	3e-52
3024020	160	RecName: Full=Eukaryotic translation ini	0.971	0.631	0.970	3e-52
333108565	159	eukaryotic translation initiation factor	0.971	0.635	0.980	3e-52
255542136	509	initiation factor 5a, putative [Ricinus	0.971	0.198	0.970	4e-52
192910692	159	eukaryotic translation initiation factor	0.971	0.635	0.980	4e-52
227438941	159	eukaryotic initiation factor 5A1 [Musa h	0.971	0.635	0.970	5e-52
223047850	159	eIF5A1 [Populus deltoides]	0.971	0.635	0.980	5e-52
40287522	159	mary storys protein [Capsicum annuum] gi	0.971	0.635	0.970	6e-52

>gi|350536449|ref|NP_001234503.1| eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum] gi|20138707|sp|Q9AXQ5.1|IF5A2_SOLLC RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2 gi|12407789|gb|AAG53648.1|AF296084_1 eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968540|gb|AFW90607.1| eukaryotic initiation factor 5A3-like protein [Solanum tuberosum]

 Score =  209 bits (531), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333108555|gb|AEF15861.1| eukaryotic translation initiation factor 5A1 [Populus tomentosa]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 100/101 (99%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3024020|sp|P56335.1|IF5A3_SOLTU RecName: Full=Eukaryotic translation initiation factor 5A-3; Short=eIF-5A-3; AltName: Full=eIF-4D gi|2225881|dbj|BAA20877.1| eukaryotic initiation factor 5A3 [Solanum tuberosum] gi|77416917|gb|ABA81854.1| eukaryotic initiation factor 5A3-like [Solanum tuberosum]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333108565|gb|AEF15866.1| eukaryotic translation initiation factor 5A1 [Populus tremula x Populus alba]

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 100/101 (99%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542136|ref|XP_002512132.1| initiation factor 5a, putative [Ricinus communis] gi|223549312|gb|EEF50801.1| initiation factor 5a, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 351 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 410

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           VGIDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 411 VGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 451

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910692|gb|ACF06454.1| eukaryotic translation initiation factor 5A isoform IV [Elaeis guineensis]

 Score =  207 bits (528), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           VGIDIF  KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438941|gb|ACP31200.1| eukaryotic initiation factor 5A1 [Musa hybrid cultivar]

 Score =  207 bits (528), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101

Source: Musa hybrid cultivar

Species: Musa hybrid cultivar

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223047850|gb|ACM79935.1| eIF5A1 [Populus deltoides]

 Score =  207 bits (528), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40287522|gb|AAR83875.1| mary storys protein [Capsicum annuum] gi|44894088|gb|AAS48586.1| eukaryotic initiation factor 5A2 [Capsicum annuum]

 Score =  207 bits (527), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 99/101 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2014784	158	ELF5A-1 "eukaryotic elongation	0.961	0.632	0.910	5.4e-47
TAIR|locus:2007176	158	ELF5A-3 "eukaryotic elongation	0.961	0.632	0.881	2.1e-45
TAIR|locus:2200570	159	FBR12 "FUMONISIN B1-RESISTANT1	0.961	0.628	0.821	7.3e-43
SGD|S000003808	157	ANB1 "Translation elongation f	0.951	0.630	0.673	2.2e-34
ASPGD|ASPL0000009517	159	AN4015 [Emericella nidulans (t	0.961	0.628	0.650	5.8e-34
SGD|S000000760	157	HYP2 "Translation elongation f	0.951	0.630	0.673	7.4e-34
ZFIN|ZDB-GENE-040426-2229	155	eif5a "eukaryotic translation	0.951	0.638	0.663	5.2e-33
GENEDB_PFALCIPARUM|PFL0210c	161	PFL0210c "eukaryotic initiatio	0.951	0.614	0.663	1.8e-32
UNIPROTKB|G1K322	133	EIF5A2 "Eukaryotic translation	0.942	0.736	0.653	1.8e-32
UNIPROTKB|Q07460	153	EIF5A2 "Eukaryotic translation	0.942	0.640	0.653	1.8e-32

TAIR|locus:2014784 ELF5A-1 "eukaryotic elongation factor 5A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 92/101 (91%), Positives = 95/101 (94%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             V IDIF  KKLEDIVPSSHNCDVPHV RTDYQLIDISEDG+
Sbjct:    60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGY 100

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2007176 ELF5A-3 "eukaryotic elongation factor 5A-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 89/101 (88%), Positives = 93/101 (92%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDISEDGF
Sbjct:    60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGF 100

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

TAIR|locus:2200570 FBR12 "FUMONISIN B1-RESISTANT12" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 83/101 (82%), Positives = 91/101 (90%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGF
Sbjct:    60 VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 100

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS;IMP

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS;IMP

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0012501 "programmed cell death" evidence=IMP

GO:0034050 "host programmed cell death induced by symbiont" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

SGD|S000003808 ANB1 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 68/101 (67%), Positives = 85/101 (84%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEH FE+ ADAGAS T+P Q   +RKNG++VIKGRPCK+V++STSKTGKHGHAK H 
Sbjct:     1 MSDEEHTFEN-ADAGASATYPMQCSALRKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             V +DIF GKKLED+ PS+HN +VP V R++YQL+DI +DG+
Sbjct:    60 VTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGY 99

GO:0043022 "ribosome binding" evidence=IEA;ISA

GO:0006452 "translational frameshifting" evidence=IEA;ISA

GO:0003746 "translation elongation factor activity" evidence=IEA;ISA

GO:0003723 "RNA binding" evidence=IEA;ISA

GO:0022626 "cytosolic ribosome" evidence=ISA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA;ISA

GO:0045905 "positive regulation of translational termination" evidence=IEA;ISA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

ASPGD|ASPL0000009517 AN4015 [Emericella nidulans (taxid:162425)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 67/103 (65%), Positives = 84/103 (81%)

Query:     1 MSDEEHH--FESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58
             M+DE H   FES ADAGAS T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK 
Sbjct:     1 MADEAHEVTFES-ADAGASATYPMQCSALRKNGFVVIKNRPCKIVDMSTSKTGKHGHAKV 59

Query:    59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             H V IDIF GKK ED+ PS+HN DVP+V+R +YQL+D+++DGF
Sbjct:    60 HLVAIDIFTGKKYEDLSPSTHNMDVPNVSRKEYQLLDVTDDGF 102

GO:0006452 "translational frameshifting" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0045948 "positive regulation of translational initiation" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

SGD|S000000760 HYP2 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 68/101 (67%), Positives = 83/101 (82%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct:     1 MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF
Sbjct:    60 VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGF 99

GO:0006414 "translational elongation" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA;IGI;IDA;IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003746 "translation elongation factor activity" evidence=IEA;IDA;IMP

GO:0003723 "RNA binding" evidence=IEA;IDA

GO:0045905 "positive regulation of translational termination" evidence=IEA;IDA

GO:0006452 "translational frameshifting" evidence=IEA;IMP

GO:0045948 "positive regulation of translational initiation" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043022 "ribosome binding" evidence=IEA;IPI

GO:0022626 "cytosolic ribosome" evidence=IPI

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-040426-2229 eif5a "eukaryotic translation initiation factor 5A" [Danio rerio (taxid:7955)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 67/101 (66%), Positives = 80/101 (79%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             M+D +  F S  DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H 
Sbjct:     1 MADPDLDFAS-GDAGASATYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             VGIDIF  KK EDI PS+HN DVP++ R DYQL+DISE GF
Sbjct:    60 VGIDIFTNKKYEDICPSTHNMDVPNIKRNDYQLVDISE-GF 99

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GENEDB_PFALCIPARUM|PFL0210c PFL0210c "eukaryotic initiation factor 5a, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 67/101 (66%), Positives = 79/101 (78%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD  H      DAGAS+T+P QAG I+KNG++++K  PCKVV+ STSKTGKHGHAK H 
Sbjct:     1 MSD--HEMYDNIDAGASQTYPVQAGAIKKNGHVMLKEHPCKVVDYSTSKTGKHGHAKAHI 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             VGIDIF G+K EDI P+SHN DVP V RT+ QLIDI+EDGF
Sbjct:    59 VGIDIFTGRKYEDICPTSHNMDVPVVKRTELQLIDITEDGF 99

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G1K322 EIF5A2 "Eukaryotic translation initiation factor 5A-2" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/101 (65%), Positives = 80/101 (79%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             M+DE     +  DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H 
Sbjct:     1 MADELDF--TTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHL 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG+
Sbjct:    59 VGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGY 98

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

UNIPROTKB|Q07460 EIF5A2 "Eukaryotic translation initiation factor 5A-2" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/101 (65%), Positives = 80/101 (79%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             M+DE     +  DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H 
Sbjct:     1 MADELDF--TTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHL 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
             VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG+
Sbjct:    59 VGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGY 98

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0005643 "nuclear pore" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19211	IF5A2_YEAST	No assigned EC number	0.6732	0.9519	0.6305	yes	no
P69039	IF5A1_NICPL	No assigned EC number	0.9405	0.9711	0.6352	N/A	no
Q07460	IF5A2_CHICK	No assigned EC number	0.6534	0.9423	0.6405	yes	no
Q9SC12	IF5A_SENVE	No assigned EC number	0.9207	0.9711	0.6352	N/A	no
P56289	IF5A1_SCHPO	No assigned EC number	0.6138	0.9615	0.6369	yes	no
P80639	IF5A_MAIZE	No assigned EC number	0.9117	0.9711	0.6312	N/A	no
P56337	IF5A5_SOLTU	No assigned EC number	0.9306	0.9711	0.6352	N/A	no
P56336	IF5A4_SOLTU	No assigned EC number	0.9405	0.9711	0.6352	N/A	no
P56335	IF5A3_SOLTU	No assigned EC number	0.9702	0.9711	0.6312	N/A	no
P69040	IF5A1_TOBAC	No assigned EC number	0.9405	0.9711	0.6352	N/A	no
P56333	IF5A1_SOLTU	No assigned EC number	0.9603	0.9711	0.6312	N/A	no
Q945F4	IF5A2_MEDSA	No assigned EC number	0.9405	0.9711	0.6352	N/A	no
P24922	IF5A2_NICPL	No assigned EC number	0.9405	0.9711	0.6352	N/A	no
Q9XI91	IF5A1_ARATH	No assigned EC number	0.9108	0.9615	0.6329	yes	no
Q9AXQ4	IF5A3_SOLLC	No assigned EC number	0.9504	0.9711	0.6352	N/A	no
Q9AXQ5	IF5A2_SOLLC	No assigned EC number	0.9801	0.9711	0.6312	N/A	no
Q9AXQ6	IF5A1_SOLLC	No assigned EC number	0.9306	0.9711	0.6352	N/A	no
Q9AXQ7	IF5A_DIACA	No assigned EC number	0.8811	0.9711	0.6312	N/A	no
Q9AXQ3	IF5A4_SOLLC	No assigned EC number	0.9603	0.9711	0.6312	N/A	no
P26564	IF5A1_MEDSA	No assigned EC number	0.9019	0.9711	0.6273	N/A	no
Q9GU68	IF5A_DROME	No assigned EC number	0.6138	0.9615	0.6289	yes	no
Q9AXJ4	IF5A_MANES	No assigned EC number	0.9702	0.9711	0.6312	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PLN03107	159	PLN03107, PLN03107, eukaryotic translation initiat	6e-74
PTZ00328	166	PTZ00328, PTZ00328, eukaryotic initiation factor 5	9e-36
TIGR00037	130	TIGR00037, eIF_5A, translation elongation factor I	9e-35
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	2e-23
PRK03999	129	PRK03999, PRK03999, translation initiation factor	6e-21
pfam01287	69	pfam01287, eIF-5a, Eukaryotic elongation factor 5A	4e-05
TIGR00038	184	TIGR00038, efp, translation elongation factor P	8e-04
PRK00529	186	PRK00529, PRK00529, elongation factor P; Validated	0.002

>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional

 Score =  215 bits (550), Expect = 6e-74
 Identities = 95/101 (94%), Positives = 96/101 (95%), Gaps = 1/101 (0%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES ADAGASKT+PQQAGTIRK GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-ADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGF
Sbjct: 60  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 100

Length = 159

>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional

 Score =  119 bits (299), Expect = 9e-36
 Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 1   MSDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 1   MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 60

Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPA 103
            V  DIF G +LED  PS+HN +VP V    Y ++DI  +  P+
Sbjct: 61  IVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPS 104

Length = 166

>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A

 Score =  115 bits (289), Expect = 9e-35
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query: 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
           S T   Q   +R  GY+VI GRPCK+V++STSK GKHGHAK   V I IF GKKLE + 
Sbjct: 1  MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVS 60

Query: 76 PSSHNCDVPHVTRTDYQLIDISED 99
          PS+   +VP V R +YQ++ I   
Sbjct: 61 PSTSKVEVPIVDRREYQVLAIMGG 84

Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor [Protein synthesis, Translation factors]. Length = 130

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score = 86.5 bits (215), Expect = 2e-23
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 19  TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
                A  +RK  YIVI G P  VVE+S  K GK G A       ++F GKK+E    + 
Sbjct: 1   MAMISASELRKGLYIVIDGEPYVVVEISHVKPGKGG-AFVRVKLKNLFTGKKVEKTFKAD 59

Query: 79  HNCDVPHVTRTDYQLIDISEDGF 101
              +V  V R   Q + I  D +
Sbjct: 60  DKVEVAIVERKTAQYLYIDGDFY 82

Length = 131

>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional

 Score = 80.3 bits (199), Expect = 6e-21
 Identities = 31/79 (39%), Positives = 46/79 (58%)

Query: 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80
            + G +++  Y+VI G PCK+VE+S SK GKHG AK   V I IF+G+K   + P    
Sbjct: 5  QVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAK 64

Query: 81 CDVPHVTRTDYQLIDISED 99
           +VP + +   Q++ I  D
Sbjct: 65 VEVPIIEKKTGQVLSIMGD 83

Length = 129

>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 13/17 (76%), Positives = 14/17 (82%)

Query: 85  HVTRTDYQLIDISEDGF 101
            V RT+YQLIDIS DGF
Sbjct: 1   IVKRTEYQLIDISGDGF 17

eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast. Length = 69

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHNCDV 83
          +RK   I + G P  V+E    K GK G A   FV +   ++  GK LE    S    + 
Sbjct: 6  LRKGLVIELDGEPYVVLEFEHVKPGK-GQA---FVRVKLKNLLTGKVLEKTFRSGEKVEK 61

Query: 84 PHVTRTDYQ 92
            V   + Q
Sbjct: 62 ADVEEREMQ 70

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated

 Score = 35.0 bits (82), Expect = 0.002
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
          A  +RK   I I G P  V+E    K GK G A   FV     ++  G  +E    +   
Sbjct: 4  ANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQA---FVRTKLKNLLTGSVVEKTFKAGDK 59

Query: 81 CDVPHVTRTDYQ 92
           +   V R + Q
Sbjct: 60 VERADVERREMQ 71

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	100.0
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	100.0
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	100.0
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	99.97
PRK03999	129	translation initiation factor IF-5A; Provisional	99.97
KOG3271	156	consensus Translation initiation factor 5A (eIF-5A	99.97
PRK12426	185	elongation factor P; Provisional	99.96
PRK14578	187	elongation factor P; Provisional	99.95
PRK04542	189	elongation factor P; Provisional	99.95
PRK00529	186	elongation factor P; Validated	99.94
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	99.94
TIGR00038	184	efp translation elongation factor P. function: inv	99.94
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	99.9
COG1499	355	NMD3 NMD protein affecting ribosome stability and	83.31
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	81.49
PF08605	131	Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; I	81.33
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	80.01

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=100.00  E-value=1.7e-39  Score=234.73  Aligned_cols=100  Identities=94%  Similarity=1.450  Sum_probs=98.3

Q ss_pred             CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (104)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~   80 (104)
                      |||++|+|| +++|+++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++
T Consensus         1 ~~~~~~~~~-~~~~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~   79 (159)
T PLN03107          1 MSDEEHHFE-SADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHN   79 (159)
T ss_pred             CCccccccc-ccccCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCE
Confidence            898778999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecEEEeeeEEEEEcCCCCC
Q 034069           81 CDVPHVTRTDYQLIDISEDGF  101 (104)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~y  101 (104)
                      +++|+|++++|||||.|||+|
T Consensus        80 ve~~~ve~~~~qyly~dgd~y  100 (159)
T PLN03107         80 CDVPHVNRTDYQLIDISEDGF  100 (159)
T ss_pred             EEEEEEEEEEEEEEEEcCCce
Confidence            999999999999999999997

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=100.00  E-value=2.5e-34  Score=201.76  Aligned_cols=87  Identities=49%  Similarity=0.805  Sum_probs=84.0

Q ss_pred             ceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (104)
Q Consensus        16 ~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY   95 (104)
                      ++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|++++++++|.|++++|||||
T Consensus         1 ~~~~~~~~~~~irkG~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY   80 (130)
T TIGR00037         1 MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLA   80 (130)
T ss_pred             CCcceeccHHHccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCc
Q 034069           96 ISEDGFP  102 (104)
Q Consensus        96 ~dgd~y~  102 (104)
                      .||+.|+
T Consensus        81 ~dg~~~~   87 (130)
T TIGR00037        81 IMGGMVQ   87 (130)
T ss_pred             ecCCEEE
Confidence            9988764

Observed in eukaryotes and archaea.

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=100.00  E-value=2.9e-34  Score=208.13  Aligned_cols=103  Identities=50%  Similarity=0.907  Sum_probs=98.9

Q ss_pred             CCcccccccc-ccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCC
Q 034069            1 MSDEEHHFES-KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH   79 (104)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~   79 (104)
                      |||++|+|+. +++|+++.|||++++.||+|.+|+|+|+||+|++++++||||||+|++++.+.+||||+++|..+++.+
T Consensus         1 m~d~~~~f~~~~~~~gas~t~p~q~~~LkkG~yvvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~h   80 (166)
T PTZ00328          1 MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH   80 (166)
T ss_pred             CCccccccccccCCCCCCceecccccceeECCEEEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCccc
Confidence            8998888995 699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecEEEeeeEEEEEcCCC------CCcc
Q 034069           80 NCDVPHVTRTDYQLIDISED------GFPA  103 (104)
Q Consensus        80 ~ve~~~ve~~~~qylY~dgd------~y~~  103 (104)
                      ++++|.|+|++||+|.+++|      +|++
T Consensus        81 nv~VP~V~r~~yqli~I~~d~~~~~~g~v~  110 (166)
T PTZ00328         81 NVEVPFVKTFTYSVLDIQPNEDPSLPAHLS  110 (166)
T ss_pred             eeEeeeEEeeEEEEEEEcCCCcccccceEE
Confidence            99999999999999999887      6764

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.5e-30  Score=182.88  Aligned_cols=82  Identities=35%  Similarity=0.455  Sum_probs=78.9

Q ss_pred             EEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCC
Q 034069           20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (104)
Q Consensus        20 ~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd   99 (104)
                      .++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.|+++++||||.||+
T Consensus         2 ~~i~~~~lr~G~~i~~dg~~~~V~~~~~~KpGK-g~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~   80 (131)
T COG0231           2 AMISASELRKGLYIVIDGEPYVVVEISHVKPGK-GGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGD   80 (131)
T ss_pred             ceeeHHHccCCCEEEECCeEEEEEEEEEccCCC-CCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCC
Confidence            578999999999999999999999999999999 5669999999999999999999999999999999999999999999


Q ss_pred             CCc
Q 034069          100 GFP  102 (104)
Q Consensus       100 ~y~  102 (104)
                      .|+
T Consensus        81 ~~~   83 (131)
T COG0231          81 FYV   83 (131)
T ss_pred             eEE
Confidence            875

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=99.97  E-value=2.2e-30  Score=181.54  Aligned_cols=83  Identities=37%  Similarity=0.680  Sum_probs=80.1

Q ss_pred             EEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCC
Q 034069           20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (104)
Q Consensus        20 ~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd   99 (104)
                      .|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.|+++++||||.||+
T Consensus         4 ~~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~dg~   83 (129)
T PRK03999          4 KQVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMGD   83 (129)
T ss_pred             ccccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEecCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCc
Q 034069          100 GFP  102 (104)
Q Consensus       100 ~y~  102 (104)
                      .|+
T Consensus        84 ~~~   86 (129)
T PRK03999         84 VVQ   86 (129)
T ss_pred             EEE
Confidence            653

>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=9.1e-31  Score=185.95  Aligned_cols=101  Identities=71%  Similarity=1.122  Sum_probs=98.7

Q ss_pred             CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (104)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~   80 (104)
                      |||++|+|+ .++|+++.|||++++.||++.+|+|+|+||+|+|.+++|.||||+|++.+..++||||+++|..++|.++
T Consensus         1 Msd~~~~Fe-~~dagas~t~p~q~salrkNG~vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn   79 (156)
T KOG3271|consen    1 MSDEEHRFE-TGDAGASATYPMQCSALRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHN   79 (156)
T ss_pred             CCccccccc-cCCCcccccccchhhheeeCCEEEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCc
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecEEEeeeEEEEEcCCCCCcc
Q 034069           81 CDVPHVTRTDYQLIDISEDGFPA  103 (104)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~y~~  103 (104)
                      +++|+++|.+||++.++++ |+|
T Consensus        80 ~dVp~vkr~~yqLidIsd~-~~s  101 (156)
T KOG3271|consen   80 MDVPVVKRVDYQLIDISDG-YLS  101 (156)
T ss_pred             cccCccccceeEEEEecCC-eEE
Confidence            9999999999999999777 765

>PRK12426 elongation factor P; Provisional

Probab=99.96  E-value=1.9e-29  Score=186.12  Aligned_cols=81  Identities=14%  Similarity=0.093  Sum_probs=78.7

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~  100 (104)
                      |+++++||+|++|+++|+||.|++++|+|||| |+|++|+|+|||.||+++|+||+++++++.+.|++++|||||.||+.
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGk-g~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~   79 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPK-GETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDE   79 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCC-CceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCe
Confidence            46899999999999999999999999999999 99999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q 034069          101 FP  102 (104)
Q Consensus       101 y~  102 (104)
                      |+
T Consensus        80 ~~   81 (185)
T PRK12426         80 YL   81 (185)
T ss_pred             EE
Confidence            75

>PRK14578 elongation factor P; Provisional

Probab=99.95  E-value=5.8e-28  Score=178.49  Aligned_cols=82  Identities=16%  Similarity=0.229  Sum_probs=77.7

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCC-cccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKH-GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKh-G~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd   99 (104)
                      ++++++||+|++|+++|+||+|++++|+|||++ |+|++|+|+|||.||+++|++|++++++|.|+|+++++||||.||+
T Consensus         1 m~~~~dik~G~~i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~   80 (187)
T PRK14578          1 MYTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGD   80 (187)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCC
Confidence            468899999999999999999999999999984 4679999999999999999999999999999999999999999999


Q ss_pred             CCc
Q 034069          100 GFP  102 (104)
Q Consensus       100 ~y~  102 (104)
                      .|+
T Consensus        81 ~~~   83 (187)
T PRK14578         81 RGV   83 (187)
T ss_pred             EEE
Confidence            875

>PRK04542 elongation factor P; Provisional

Probab=99.95  E-value=6.5e-28  Score=178.50  Aligned_cols=82  Identities=20%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecC-CCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKT-GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~Kp-GKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd   99 (104)
                      ++++++||+|++|+++|+||+|++++|+|| ||+|+|++|+|+|||.||+++|++|+|+++++.++|++++|||||.||+
T Consensus         1 mi~~~dik~G~~i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~   80 (189)
T PRK04542          1 MPKANEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGD   80 (189)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCC
Confidence            578999999999999999999999999999 7933669999999999999999999999999999999999999999999


Q ss_pred             CCc
Q 034069          100 GFP  102 (104)
Q Consensus       100 ~y~  102 (104)
                      .|+
T Consensus        81 ~~~   83 (189)
T PRK04542         81 EYV   83 (189)
T ss_pred             EEE
Confidence            875

>PRK00529 elongation factor P; Validated

Probab=99.94  E-value=1.3e-26  Score=170.56  Aligned_cols=81  Identities=26%  Similarity=0.360  Sum_probs=78.1

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~  100 (104)
                      ++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.+.++++++||||.||+.
T Consensus         1 ~~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~dgd~   79 (186)
T PRK00529          1 MISANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYNDGDG   79 (186)
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEECCCE
Confidence            46899999999999999999999999999999 99999999999999999999999999999999999999999999987


Q ss_pred             Cc
Q 034069          101 FP  102 (104)
Q Consensus       101 y~  102 (104)
                      |+
T Consensus        80 ~~   81 (186)
T PRK00529         80 YV   81 (186)
T ss_pred             EE
Confidence            63

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=99.94  E-value=3.7e-26  Score=168.75  Aligned_cols=79  Identities=15%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             cccccCceEEEECCeeEEEEEeeEecCCCCccc-EEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCCCc
Q 034069           24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHA-KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFP  102 (104)
Q Consensus        24 ~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A-~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~y~  102 (104)
                      +++||+|++|+++|+||+|++++|+|||+.|+| ++|+|+|||.||+++|++|+++|+++.++|++++|||||.||+.|+
T Consensus         2 ~~~lk~G~~i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~~   81 (186)
T TIGR02178         2 ASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKDGEEYV   81 (186)
T ss_pred             cccccCCCEEEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeEE
Confidence            689999999999999999999999999884544 8999999999999999999999999999999999999999999875

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>TIGR00038 efp translation elongation factor P

Probab=99.94  E-value=3.3e-26  Score=168.28  Aligned_cols=80  Identities=26%  Similarity=0.365  Sum_probs=77.1

Q ss_pred             EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCCC
Q 034069           22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF  101 (104)
Q Consensus        22 i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~y  101 (104)
                      +++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+++++++.+.++++++||||.||+.|
T Consensus         1 ~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~dgd~~   79 (184)
T TIGR00038         1 ISANDLRKGLVIELDGEPYVVLEFEHVKPGK-GQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKDGDSY   79 (184)
T ss_pred             CchhhccCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEECCCEE
Confidence            4689999999999999999999999999999 999999999999999999999999999999999999999999999876


Q ss_pred             c
Q 034069          102 P  102 (104)
Q Consensus       102 ~  102 (104)
                      +
T Consensus        80 ~   80 (184)
T TIGR00038        80 V   80 (184)
T ss_pred             E
Confidence            4

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=99.90  E-value=2.5e-23  Score=127.89  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=53.5

Q ss_pred             ecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCce
Q 034069           23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC   81 (104)
Q Consensus        23 ~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~v   81 (104)
                      +|+|||+|++|+++|+||.|++++|++||| |+|++|+++|||.||+++|.+|+++|+|
T Consensus         1 sa~dlr~G~~i~~~g~~~~V~~~~~~k~gk-g~a~v~~klknl~tG~~~e~tf~s~d~v   58 (58)
T PF08207_consen    1 SASDLRKGMVIEIDGEPYVVLDFQHVKPGK-GGAFVRVKLKNLRTGSKVEKTFRSGDKV   58 (58)
T ss_dssp             EGGG--TTSEEEETTEEEEEEEEEEECCTT-SSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred             CHHHccCCCEEEECCEEEEEEEEEEECCCC-CCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence            589999999999999999999999999999 9999999999999999999999999986

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=83.31  E-value=6.6  Score=31.95  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             ccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCC
Q 034069           11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS   78 (104)
Q Consensus        11 ~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~   78 (104)
                      ++-.-...||-+..-++++|++|.++|..+.++..    -|+      .+.+++|.|++..+.++...
T Consensus       231 tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~----~~~------~~~~~dl~t~e~~~~~~~~~  288 (355)
T COG1499         231 TGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRS----IGK------GIVVLDLETGEPVEITWSVY  288 (355)
T ss_pred             CCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEE----ecC------ceEEEecccCCccccChhhc
Confidence            44445667888999999999999999976655532    255      38899999998887777533

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.49  E-value=8  Score=26.53  Aligned_cols=63  Identities=16%  Similarity=0.248  Sum_probs=40.3

Q ss_pred             EecccccCceEEEE-----CCeeEEEEE-----eeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc-eeecEEEe
Q 034069           22 QQAGTIRKNGYIVI-----KGRPCKVVE-----VSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN-CDVPHVTR   88 (104)
Q Consensus        22 i~~~~lkkG~~I~i-----~g~p~~Vve-----~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~-ve~~~ve~   88 (104)
                      .+..+|++|++|.+     +|....+..     +....-|= +   --+.++|++.|.-+|.+|+-..+ ++.+.|-+
T Consensus        14 ~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~-~---ssftlR~~~~g~gVE~~f~l~SP~I~~IeV~~   87 (113)
T PF01245_consen   14 KDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGL-N---SSFTLRNISQGVGVERVFPLYSPLIKSIEVLR   87 (113)
T ss_dssp             SSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSST-S---SEEEEEEEETTEEEEEEEETTSTTEEEEEEEE
T ss_pred             cCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCC-C---eeEEEEEEecCccEEEEEEcCCCCeEEEEEEE
Confidence            45678999998865     354444332     33332222 2   24789999999999999996644 55454444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways

Probab=81.33  E-value=5.5  Score=28.06  Aligned_cols=41  Identities=12%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             EEecccccCceEEEECCe--eEEEEEeeEec--CC-----CCcccEEEEE
Q 034069           21 PQQAGTIRKNGYIVIKGR--PCKVVEVSTSK--TG-----KHGHAKCHFV   61 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~--p~~Vve~~~~K--pG-----KhG~A~vr~k   61 (104)
                      -+-.=|||.|+.|.+++.  +|+|+-+.+.-  +.     -+|.+.|.+|
T Consensus        54 dv~~LDlRIGD~Vkv~~~k~~yiV~Gl~~~~~~~~~~i~cirGy~tV~Lk  103 (131)
T PF08605_consen   54 DVKYLDLRIGDTVKVDGPKVTYIVVGLECKISSEDNIITCIRGYNTVYLK  103 (131)
T ss_pred             cEeeeeeecCCEEEECCCCccEEEEEeeecCCCCCCceEEcCCCcEEEEE
Confidence            356679999999999998  89999988872  22     1267766663

DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=80.01  E-value=10  Score=26.25  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             ecccccCceEEEE-----CCeeEEE-----EEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCC
Q 034069           23 QAGTIRKNGYIVI-----KGRPCKV-----VEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH   79 (104)
Q Consensus        23 ~~~~lkkG~~I~i-----~g~p~~V-----ve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~   79 (104)
                      ...++++|++|.+     +|....+     +-+...  ++ | .--.+.+||++.|--.|.+|+...
T Consensus        15 ~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~--~~-G-~~~tftvRki~~gvGVEr~fpl~S   77 (116)
T PRK05338         15 DIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARR--GR-G-LNETFTVRKISYGVGVERTFPLHS   77 (116)
T ss_pred             CCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEe--CC-C-CCceEEEEEcccCccEEEEecCCC
Confidence            4678999998865     5654333     333333  22 2 223589999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
3hks_A	167	Crystal Structure Of Eukaryotic Translation Initiat		6e-41
3er0_A	167	Crystal Structure Of The Full Length Eif5a From Sac		2e-36
3cpf_A	138	Crystal Structure Of Human Eukaryotic Translation I		4e-31
1x6o_A	174	Structural Analysis Of Leishmania Braziliensis Euka		4e-26
1xtd_A	174	Structural Analysis Of Leishmania Mexicana Eukaryot		4e-25
1bkb_A	136	Initiation Factor 5a From Archebacterium Pyrobaculu		8e-13
1eif_A	135	Eukaryotic Translation Initiation Factor 5a From Me		9e-12
2eif_A	136	Eukaryotic Translation Initiation Factor 5a From Me		9e-12
1iz6_A	138	Crystal Structure Of Translation Initiation Factor		7e-10
1khi_A	176	Crystal Structure Of Hex1 Length = 176		8e-04

>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167

Iteration: 1
 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/94 (81%), Positives = 84/94 (89%), Gaps = 1/94 (1%)
Query: 8   FESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67
           FE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF 
Sbjct: 16  FEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFT 74
Query: 68  GKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
            KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGF
Sbjct: 75  AKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 108

>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From Saccharomyces Cerevisiae Length = 167

Iteration: 1
 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 83/101 (82%), Gaps = 2/101 (1%)
Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct: 11  MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69
Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF
Sbjct: 70  VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGF 109

>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 16  ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
            S TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI 
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60
Query: 76  PSSHNCDVPHVTRTDYQLIDISEDGF 101
           PS+HN DVP++ R D+QLI I +DG+
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGI-QDGY 85

>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 1   MSDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 9   MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68
Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPA 103
            V  DIF G +LED  PS+HN +VP V    Y ++DI  +  P+
Sbjct: 69  IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPS 112

>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 2   SDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           SDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK   
Sbjct: 10  SDEDHDFAHQGGGDNASKTYPXAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSI 69
Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPA 103
           V  DIF G +LED  PS+HN +VP V    Y ++DI  +  P+
Sbjct: 70  VATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPS 112

>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
          +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P     +
Sbjct: 10 EAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVE 69
Query: 83 VPHVTRTDYQLIDISED 99
          VP + +   Q++ +S D
Sbjct: 70 VPIIEKFTAQILSVSGD 86

>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83
           G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S   +V
Sbjct: 12 VGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEV 71
Query: 84 PHVTRTDYQLIDISED 99
          P + R   Q++ I  D
Sbjct: 72 PIIDRRKGQVLAIMGD 87

>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83
           G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S   +V
Sbjct: 13 VGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEV 72
Query: 84 PHVTRTDYQLIDISED 99
          P + R   Q++ I  D
Sbjct: 73 PIIDRRKGQVLAIMGD 88

>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
          Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P+S   D
Sbjct: 8  QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 67
Query: 83 VPHVTRTDYQLIDISED 99
          VP + +   Q+I I+ D
Sbjct: 68 VPIIDKKTAQVIAITPD 84

>pdb|1KHI|A Chain A, Crystal Structure Of Hex1 Length = 176

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 3  DEEHHFESKADAGASKTFPQQAGT-----------IRKNGYIVIKGRPCKVVEVSTS-KT 50
          D++ H   +ADA    T     G+           IR    ++++GRPC+V+ +STS  T
Sbjct: 5  DDDAHGHVEADAAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAAT 64
Query: 51 GKHGHAKCHFVGIDIFNGKKLED 73
          G+H      ++G+D+F  +  E+
Sbjct: 65 GQH-----RYLGVDLFTKQLHEE 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	1e-46
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	6e-43
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	2e-40
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	8e-38
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	1e-36
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	1e-35
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	1e-35
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	2e-33
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	2e-04
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	2e-04
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	4e-04

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167

 Score =  145 bits (368), Expect = 1e-46
 Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 1/101 (0%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 9   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 67

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGF
Sbjct: 68  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 108

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174

 Score =  137 bits (345), Expect = 6e-43
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 1   MSDEEHHFESK-ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 9   MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68

Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFPAD 104
            V  DIF G +LED  PS+HN +VP V    Y ++DI  +  P+ 
Sbjct: 69  IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSL 113

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167

 Score =  130 bits (327), Expect = 2e-40
 Identities = 65/101 (64%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct: 11  MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101
           V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +   
Sbjct: 70  VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDIDDGFL 110

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score =  122 bits (309), Expect = 8e-38
 Identities = 27/85 (31%), Positives = 42/85 (49%)

Query: 17  SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVP 76
                 Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P
Sbjct: 2   GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61

Query: 77  SSHNCDVPHVTRTDYQLIDISEDGF 101
           +S   DVP + +   Q+I I+ D  
Sbjct: 62  TSAEVDVPIIDKKTAQVIAITPDTV 86

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score =  119 bits (301), Expect = 1e-36
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query: 17  SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVP 76
             T     G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P
Sbjct: 6   PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65

Query: 77  SSHNCDVPHVTRTDYQLIDISEDGF 101
           +S   +VP + R   Q++ I  D  
Sbjct: 66  TSSKVEVPIIDRRKGQVLAIMGDMV 90

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score =  117 bits (295), Expect = 1e-35
 Identities = 31/83 (37%), Positives = 48/83 (57%)

Query: 19  TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
           T   +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P  
Sbjct: 6   TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79  HNCDVPHVTRTDYQLIDISEDGF 101
              +VP + +   Q++ +S D  
Sbjct: 66  AQVEVPIIEKFTAQILSVSGDVI 88

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138

 Score =  117 bits (294), Expect = 1e-35
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 16  ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
            S TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI 
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60

Query: 76  PSSHNCDVPHVTRTDYQLIDISEDGF 101
           PS+HN DVP++ R D+QLI I +   
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGIQDGYL 86

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176

 Score =  113 bits (283), Expect = 2e-33
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 23/115 (20%)

Query: 3   DEEHHFESKAD-----------AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KT 50
           D++ H   +AD             AS+T       IR    ++++GRPC+V+ +STS  T
Sbjct: 5   DDDAHGHVEADAAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAAT 64

Query: 51  GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC------DVPHVTRTDYQLIDISED 99
           G+H +     +G+D+F  +  E+    S+         +       Y+++D+ + 
Sbjct: 65  GQHRY-----LGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDMQDG 114

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
             +R    + + G   + VE    K G+ G A    V     ++  G  +E    S   
Sbjct: 4  VTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGA---KVVAKFKNLETGATVERTFNSGEK 59

Query: 81 CDVPHVTRTDYQ 92
           +  +V   + Q
Sbjct: 60 LEDIYVETRELQ 71

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
          A   R      I G P  + +   +K+G+   A    V +   ++  G   E +  +   
Sbjct: 7  AQEFRAGQVANINGAPWVIQKAEFNKSGR-NAA---VVKMKLKNLLTGAGTETVFKADDK 62

Query: 81 CDVPHVTRTDYQ 92
           +   + R +  
Sbjct: 63 LEPIILDRKEVT 74

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHNCDV 83
           R    +++ G PC +++    K GK G A   F  +   ++  G+ LE    S      
Sbjct: 12 FRGGLKVMVDGDPCSIIDNEFVKPGK-GQA---FNRVKFRNLKTGRVLERTFKSGETLPA 67

Query: 84 PHVTRTDYQ 92
            V   + Q
Sbjct: 68 ADVVEVEMQ 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	100.0
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	100.0
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	100.0
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	100.0
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	100.0
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	99.97
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	99.97
1yby_A	215	Translation elongation factor P; conserved hypothe	99.97
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	99.97
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	99.97
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	99.89
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	83.36
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	82.58

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=100.00  E-value=4.9e-41  Score=243.36  Aligned_cols=100  Identities=83%  Similarity=1.331  Sum_probs=82.6

Q ss_pred             CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (104)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~   80 (104)
                      |||++|+|+ +++|+++.||||++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|.+|+++++
T Consensus         9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k   87 (167)
T 3hks_A            9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN   87 (167)
T ss_dssp             ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred             cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence            899999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecEEEeeeEEEEEcCCCCC
Q 034069           81 CDVPHVTRTDYQLIDISEDGF  101 (104)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~y  101 (104)
                      +++|.|++++|||||+|++++
T Consensus        88 ve~~~ver~~~QyLY~d~d~~  108 (167)
T 3hks_A           88 CDVPHVNRVDYQLIDITEDGF  108 (167)
T ss_dssp             EEEECCEEEEEEEEEECTTSB
T ss_pred             EEeeeEEEEEEEEEEECCCCE
Confidence            999999999999999976543

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-41  Score=243.62  Aligned_cols=101  Identities=64%  Similarity=1.074  Sum_probs=88.6

Q ss_pred             CCccccccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCc
Q 034069            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (104)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~   80 (104)
                      |||++|.|+ +++|++|.||||++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++
T Consensus        11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k   89 (167)
T 3er0_A           11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN   89 (167)
T ss_dssp             ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred             ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence            899999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecEEEeeeEEEEEcCCCCCc
Q 034069           81 CDVPHVTRTDYQLIDISEDGFP  102 (104)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~y~  102 (104)
                      +++|+|++++|||||+||+.|+
T Consensus        90 ve~~~ver~~~QyLY~dg~~~~  111 (167)
T 3er0_A           90 MEVPVVKRNEYQLLDIDDGFLS  111 (167)
T ss_dssp             EEECCCCEEEEECCCCTTTTCC
T ss_pred             cccceEEEeeEEEEEEcCCEEE
Confidence            9999999999999999998775

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=100.00  E-value=1e-38  Score=232.45  Aligned_cols=98  Identities=52%  Similarity=0.938  Sum_probs=77.7

Q ss_pred             CCcccc--ccccccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCC
Q 034069            1 MSDEEH--HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS   78 (104)
Q Consensus         1 ~~~~~~--~~~~~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~   78 (104)
                      |||+.|  +|+ +++|+++.|+|+++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|++|+++
T Consensus         9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~   87 (174)
T 1x6o_A            9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST   87 (174)
T ss_dssp             -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred             cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence            677654  499 99999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CceeecEEEeeeEEEEEcCCC
Q 034069           79 HNCDVPHVTRTDYQLIDISED   99 (104)
Q Consensus        79 ~~ve~~~ve~~~~qylY~dgd   99 (104)
                      +++++|+|++++|||||+|||
T Consensus        88 ~kve~~~Ver~~~QyLY~dgd  108 (174)
T 1x6o_A           88 HNVEVPFVKTYTYSVLDIQAN  108 (174)
T ss_dssp             SEEEEECCEEEEEEEEEEECC
T ss_pred             CEEEeeEEEEEEEEEEEecCC
Confidence            999999999999999999998

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=211.70  Aligned_cols=87  Identities=64%  Similarity=1.103  Sum_probs=80.0

Q ss_pred             ceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (104)
Q Consensus        16 ~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY   95 (104)
                      +|.|+|+++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|++|++++++++|+|++++|||||
T Consensus         1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly   80 (138)
T 3cpf_A            1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG   80 (138)
T ss_dssp             -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred             CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence            47899999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             cCCCCCc
Q 034069           96 ISEDGFP  102 (104)
Q Consensus        96 ~dgd~y~  102 (104)
                      +||+.|+
T Consensus        81 ~dg~~~~   87 (138)
T 3cpf_A           81 IQDGYLS   87 (138)
T ss_dssp             EETTEEE
T ss_pred             ecCCEEE
Confidence            9998764

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=6e-35  Score=205.50  Aligned_cols=86  Identities=31%  Similarity=0.599  Sum_probs=83.7

Q ss_pred             eeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI   96 (104)
Q Consensus        17 ~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~   96 (104)
                      +.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.
T Consensus         2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~   81 (138)
T 1iz6_A            2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI   81 (138)
T ss_dssp             CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred             CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc
Q 034069           97 SEDGFP  102 (104)
Q Consensus        97 dgd~y~  102 (104)
                      ||+.|+
T Consensus        82 dg~~~~   87 (138)
T 1iz6_A           82 TPDTVQ   87 (138)
T ss_dssp             CSSEEE
T ss_pred             CCCEEE
Confidence            998764

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=1.1e-34  Score=203.37  Aligned_cols=84  Identities=37%  Similarity=0.671  Sum_probs=82.1

Q ss_pred             eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCC
Q 034069           19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE   98 (104)
Q Consensus        19 t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dg   98 (104)
                      |+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||
T Consensus         6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg   85 (136)
T 1bkb_A            6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG   85 (136)
T ss_dssp             CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred             EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             CCCc
Q 034069           99 DGFP  102 (104)
Q Consensus        99 d~y~  102 (104)
                      +.|+
T Consensus        86 ~~~~   89 (136)
T 1bkb_A           86 DVIQ   89 (136)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            8764

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=100.00  E-value=1e-33  Score=198.72  Aligned_cols=86  Identities=37%  Similarity=0.631  Sum_probs=83.2

Q ss_pred             eeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEc
Q 034069           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI   96 (104)
Q Consensus        17 ~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~   96 (104)
                      +.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.++++++||||.
T Consensus         6 ~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~   85 (136)
T 2eif_A            6 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAI   85 (136)
T ss_dssp             SSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEE
T ss_pred             EeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEe
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc
Q 034069           97 SEDGFP  102 (104)
Q Consensus        97 dgd~y~  102 (104)
                      ||+.|+
T Consensus        86 dg~~~~   91 (136)
T 2eif_A           86 MGDMVQ   91 (136)
T ss_dssp             ETTEEE
T ss_pred             cCCEEE
Confidence            998764

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=99.97  E-value=1e-31  Score=197.87  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             eeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcC
Q 034069           18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS   97 (104)
Q Consensus        18 ~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~d   97 (104)
                      .-+++++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+++++++.|+|++++|||||.|
T Consensus         3 ~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~d   81 (191)
T 3a5z_B            3 HMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYND   81 (191)
T ss_dssp             ---CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEEC
T ss_pred             ccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeC
Confidence            34679999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             CCCCc
Q 034069           98 EDGFP  102 (104)
Q Consensus        98 gd~y~  102 (104)
                      ||.|+
T Consensus        82 gd~~~   86 (191)
T 3a5z_B           82 GEFWH   86 (191)
T ss_dssp             SSCEE
T ss_pred             CCEEE
Confidence            99874

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=99.97  E-value=1.3e-31  Score=196.15  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~  100 (104)
                      |+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+++++++.|+|++++|||||.|||.
T Consensus         1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~   79 (184)
T 1ueb_A            1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEE   79 (184)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTE
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCE
Confidence            47999999999999999999999999999999 99999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q 034069          101 FP  102 (104)
Q Consensus       101 y~  102 (104)
                      |+
T Consensus        80 ~~   81 (184)
T 1ueb_A           80 MV   81 (184)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=99.97  E-value=1e-30  Score=195.52  Aligned_cols=86  Identities=21%  Similarity=0.271  Sum_probs=77.3

Q ss_pred             ceeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEE
Q 034069           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (104)
Q Consensus        16 ~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY   95 (104)
                      .+-..|+++++||+|++|+++|+||+|++++|+|||| |+||+|+|+|||+||+++|++|+++++++.|+|++++|||||
T Consensus        26 ~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY  104 (215)
T 1yby_A           26 KKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLY  104 (215)
T ss_dssp             -----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEE
T ss_pred             hhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEE
Confidence            3445668999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             cCCCCCc
Q 034069           96 ISEDGFP  102 (104)
Q Consensus        96 ~dgd~y~  102 (104)
                      .|||.|+
T Consensus       105 ~Dgd~y~  111 (215)
T 1yby_A          105 NDGDLYY  111 (215)
T ss_dssp             EETTEEE
T ss_pred             eCCCEEE
Confidence            9999874

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=99.97  E-value=2.3e-30  Score=190.58  Aligned_cols=81  Identities=19%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~  100 (104)
                      ++++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|.+|+++++++.|.|++++|||||.||+.
T Consensus         6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~   84 (191)
T 3tre_A            6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGEF   84 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSSC
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCCc
Confidence            69999999999999999999999999999999 99999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q 034069          101 FP  102 (104)
Q Consensus       101 y~  102 (104)
                      |+
T Consensus        85 ~~   86 (191)
T 3tre_A           85 WH   86 (191)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=99.97  E-value=3.7e-30  Score=189.51  Aligned_cols=81  Identities=14%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeEEEEEcCCCC
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~qylY~dgd~  100 (104)
                      |+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.|+++++||||.|||.
T Consensus         4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~   82 (191)
T 3oyy_A            4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL   82 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred             cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence            68999999999999999999999999999999 78999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q 034069          101 FP  102 (104)
Q Consensus       101 y~  102 (104)
                      |+
T Consensus        83 ~~   84 (191)
T 3oyy_A           83 YV   84 (191)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5

Probab=99.89  E-value=3.7e-23  Score=150.48  Aligned_cols=85  Identities=31%  Similarity=0.572  Sum_probs=77.7

Q ss_pred             ccCCCceeeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEEEcCC--------Cce
Q 034069           11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC   81 (104)
Q Consensus        11 ~~~~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~-KpGKhG~A~vr~k~knl~TG~~~E~tf~s~--------~~v   81 (104)
                      +++|+++.|+|+++++||+|.+|+|+|+||+|++++++ |||||     ++.+.+||||+++|...++.        +++
T Consensus        24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm   98 (176)
T 1khi_A           24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM   98 (176)
T ss_dssp             ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred             CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence            68999999999999999999999999999999999999 89998     89999999999999999988        899


Q ss_pred             eecEEEeeeEEEEEcCCCCCcc
Q 034069           82 DVPHVTRTDYQLIDISEDGFPA  103 (104)
Q Consensus        82 e~~~ve~~~~qylY~dgd~y~~  103 (104)
                      ++|+|+  +||+|.++ |+|++
T Consensus        99 ~VPvVk--~yQlldI~-dg~ls  117 (176)
T 1khi_A           99 LGPVFK--QYRVLDMQ-DGSIV  117 (176)
T ss_dssp             EEECCE--EEEEEEEE-TTEEE
T ss_pred             ccceeE--EEEEEEEc-CCeEE
Confidence            999996  99999994 66664

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=83.36  E-value=4  Score=27.28  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=41.3

Q ss_pred             EecccccCceEEEE-----CCeeEEEEEeeEec---CCCCcccEEEEEEEEccCCcEEEEEEcCCC-ceeecEEEe
Q 034069           22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTR   88 (104)
Q Consensus        22 i~~~~lkkG~~I~i-----~g~p~~Vve~~~~K---pGKhG~A~vr~k~knl~TG~~~E~tf~s~~-~ve~~~ve~   88 (104)
                      ....+|++|++|.+     +|....+.-++-.-   -|+ |- --.+.++++..|.-.|.+|+-.. .++.+.|.+
T Consensus        14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G~-~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r   87 (114)
T 3r8s_P           14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-GL-HSAFTVRKISNGEGVERVFQTHSPVVDSISVKR   87 (114)
T ss_dssp             SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-GG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred             cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-CC-CeEEEEEEecCCccEEEEEecCCCccceEEEEE
Confidence            34578999998865     46655443333222   133 32 23478999999999999999653 355555543

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=82.58  E-value=4.2  Score=28.33  Aligned_cols=64  Identities=13%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             ecccccCceEEEE-----CCeeEEEEEeeEec---CCCCcccEEEEEEEEccCCcEEEEEEcCCC-ceeecEEEe
Q 034069           23 QAGTIRKNGYIVI-----KGRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTR   88 (104)
Q Consensus        23 ~~~~lkkG~~I~i-----~g~p~~Vve~~~~K---pGKhG~A~vr~k~knl~TG~~~E~tf~s~~-~ve~~~ve~   88 (104)
                      ...+|++|++|.+     +|....+.-|+-+-   -|+ |- --.+.+|++..|--+|.+|+-.. .++.+.|.+
T Consensus        18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-Gl-~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvr   90 (146)
T 3v2d_T           18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-GF-NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQ   90 (146)
T ss_dssp             CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-GG-GCEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred             cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-CC-CeEEEEEEecCCccEEEEEecCCCccceEEEEe
Confidence            4568999998865     56544443322221   133 22 23478999999999999999654 355555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1x6oa1	68	b.34.5.2 (A:19-86) Eukaryotic initiation translati	4e-35
d1khia1	76	b.34.5.2 (A:27-102) Woronin body major protein (He	1e-27
d2eifa1	73	b.34.5.2 (A:1-73) Eukaryotic initiation translatio	2e-24
d1iz6a1	69	b.34.5.2 (A:2-70) Eukaryotic initiation translatio	1e-22
d1bkba1	71	b.34.5.2 (A:4-74) Eukaryotic initiation translatio	3e-22
d1ueba1	63	b.34.5.2 (A:1-63) Elongation factor P N-terminal d	0.002

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score =  112 bits (282), Expect = 4e-35
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77
          KT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK   V  DIF G +LED  PS
Sbjct: 1  KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPS 60

Query: 78 SHNCDVP 84
          +HN +VP
Sbjct: 61 THNVEVP 67

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

 Score = 94.1 bits (234), Expect = 1e-27
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLE 72
            AS+T       IR    ++++GRPC+V+ +STS  TG+H +     +G+D+F  +  E
Sbjct: 1  GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQLHE 55

Query: 73 DIVPSSHNCDVPHVTR 88
          +    S+      V  
Sbjct: 56 ESSFVSNPAPSVVVQT 71

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 86.0 bits (213), Expect = 2e-24
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
          T     G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S
Sbjct: 7  TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 66

Query: 79 HNCDVP 84
             +VP
Sbjct: 67 SKVEVP 72

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 81.0 bits (200), Expect = 1e-22
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
          Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P+S   D
Sbjct: 7  QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 66

Query: 83 VP 84
          VP
Sbjct: 67 VP 68

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 80.3 bits (198), Expect = 3e-22
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
          T   +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P  
Sbjct: 6  TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79 HNCDVP 84
             +VP
Sbjct: 66 AQVEVP 71

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
              +R    + + G   + VE    K G+ G AK      ++  G  +E    S    +
Sbjct: 3  SVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLE 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1bkba1	71	Eukaryotic initiation translation factor 5a (eIF5a	99.95
d2eifa1	73	Eukaryotic initiation translation factor 5a (eIF5a	99.95
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	99.94
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	99.93
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	99.92
d1khia1	76	Woronin body major protein (Hex1) {Filamentous fun	99.81

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.95  E-value=4.2e-28  Score=152.41  Aligned_cols=68  Identities=41%  Similarity=0.751  Sum_probs=65.7

Q ss_pred             eeeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeec
Q 034069           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP   84 (104)
Q Consensus        17 ~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~   84 (104)
                      ..|.+|++++||+|++|+++|+||+|++++|+||||||+|++|++++||+||+++|.+|+++|+||+|
T Consensus         4 m~~~~i~a~~lKkG~~i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP   71 (71)
T d1bkba1           4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             ceeeEEEHHHccCCCEEEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence            45778999999999999999999999999999999999999999999999999999999999999987

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=4.4e-28  Score=153.05  Aligned_cols=68  Identities=41%  Similarity=0.727  Sum_probs=66.1

Q ss_pred             eeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecE
Q 034069           18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (104)
Q Consensus        18 ~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~   85 (104)
                      .|.++++++||+|++|+++|+||+|++++|+||||||+|++|++++||+||+++|.+|+++|++|+|.
T Consensus         6 ~~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevPi   73 (73)
T d2eifa1           6 GTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPI   73 (73)
T ss_dssp             SEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEEC
T ss_pred             cceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEeccC
Confidence            58899999999999999999999999999999999999999999999999999999999999999984

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=2.5e-27  Score=147.99  Aligned_cols=67  Identities=34%  Similarity=0.662  Sum_probs=64.7

Q ss_pred             eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecE
Q 034069           19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (104)
Q Consensus        19 t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~   85 (104)
                      ..+|++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++|+||+|.
T Consensus         3 ~~~i~~~~lkkG~~i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP~   69 (69)
T d1iz6a1           3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPI   69 (69)
T ss_dssp             EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             cEEEEHhHccCCCEEEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEeccC
Confidence            4679999999999999999999999999999999999999999999999999999999999999984

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.93  E-value=8.5e-26  Score=140.81  Aligned_cols=68  Identities=59%  Similarity=1.087  Sum_probs=62.4

Q ss_pred             eeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecE
Q 034069           18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (104)
Q Consensus        18 ~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~   85 (104)
                      +|+|+++++||+|.+|+|+|+||+|++++++||||||+|++|+.+.+||||+++|...++.+++++|.
T Consensus         1 ~T~p~~~~~lkkG~yv~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP~   68 (68)
T d1x6oa1           1 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF   68 (68)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             CceeeEcceeeECCEEEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999984

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.92  E-value=2.5e-25  Score=136.65  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeec
Q 034069           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP   84 (104)
Q Consensus        21 ~i~~~~lkkG~~I~i~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~   84 (104)
                      |+++++||+|++|+++|+||.|++++|++||| |+|++|+|+|||.||+++|.+|+++|+||.+
T Consensus         1 Mi~a~elkkG~~i~~~g~~~~V~~~~~~kpgk-g~a~v~~Klknl~tG~~~e~tf~~~dkve~V   63 (63)
T d1ueba1           1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             CCcHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence            58899999999999999999999999999999 9999999999999999999999999999864

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=99.81  E-value=4.1e-20  Score=116.49  Aligned_cols=73  Identities=30%  Similarity=0.491  Sum_probs=68.1

Q ss_pred             CCceeeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEEEcCCCceeecEEEeeeE
Q 034069           14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDY   91 (104)
Q Consensus        14 ~~~~~t~~i~~~~lkkG~~I~i~g~p~~Vve~~~~-KpGKhG~A~vr~k~knl~TG~~~E~tf~s~~~ve~~~ve~~~~   91 (104)
                      |+++.|+|+++++||+|.+|+|+|+||+|++++++ |||||     ++.+.|||||+++|...+..+....+.+++.-.
T Consensus         1 a~as~T~p~~~~~lkkg~yv~i~g~PCkIv~istS~ktGKH-----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g   74 (76)
T d1khia1           1 GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLG   74 (76)
T ss_dssp             CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEE
T ss_pred             CCCCcceeEEccceeeCCEEEECCcccEEEEEeeccCCCce-----eEEEEeeccCcEeeecccccCCCCceeeeeeec
Confidence            68899999999999999999999999999999998 89998     789999999999999999999999888887543