Citrus Sinensis ID: 034094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGPQIQI
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccc
Coil and Loop (DISEMBL)
maateensqlfpIFILTIMALPLVPYTILKLCHAFSKKIKtihcqcsdcarsgkyRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRevwnmgpqiqi
Flexible Loop (DISEMBL)
maateensqlfPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGPQIQI
Low Complexity Region (SEG)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNlslvllwvimiiliyyiKSTSREVWNMGPQIQI
Disordered region (IsUnstruct)
*********LFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWN*******
Disordered Region (DISOPRED)
*********LFPIFILTIMALPLVPYTILKLC********************************NFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGPQIQ*
Disordered Region (DISEMBL)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGPQIQI
Disordered Region (DISPRO)
******NSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGPQIQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
225464625	688	PREDICTED: translocation protein SEC63 h	0.913	0.138	0.821	4e-41
302143768	618	unnamed protein product [Vitis vinifera]	0.913	0.153	0.821	6e-41
255545152	682	heat shock protein binding protein, puta	0.961	0.146	0.77	1e-40
449445973	685	PREDICTED: translocation protein SEC63 h	0.961	0.145	0.75	4e-39
356530479	685	PREDICTED: translocation protein SEC63 h	0.913	0.138	0.768	6e-39
224135305	685	predicted protein [Populus trichocarpa]	0.961	0.145	0.73	1e-38
224079782	685	predicted protein [Populus trichocarpa]	0.961	0.145	0.73	2e-38
449533991	242	PREDICTED: translocation protein SEC63 h	0.961	0.413	0.75	2e-37
356556432	685	PREDICTED: translocation protein SEC63 h	0.961	0.145	0.73	2e-37
125547707	681	hypothetical protein OsI_15323 [Oryza sa	0.961	0.146	0.71	1e-36

>gi|225464625|ref|XP_002275958.1| PREDICTED: translocation protein SEC63 homolog [Vitis vinifera]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 89/95 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREV 95
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E+
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQEI 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143768|emb|CBI22629.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 89/95 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREV 95
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E+
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQEI 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545152|ref|XP_002513637.1| heat shock protein binding protein, putative [Ricinus communis] gi|223547545|gb|EEF49040.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/100 (77%), Positives = 88/100 (88%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MA +EENS LFPIFILTIMALPLVPYTI+KLCHA SKK K+I+C CS+C RSGKYRKSIF
Sbjct: 1   MATSEENSALFPIFILTIMALPLVPYTIMKLCHAASKKSKSIYCNCSECFRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           K+ISNFSTCSNL+L+LLWVIMI L+YYIK+ SRE+    P
Sbjct: 61  KKISNFSTCSNLTLILLWVIMIFLVYYIKNMSREIQVFDP 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445973|ref|XP_004140746.1| PREDICTED: translocation protein SEC63 homolog [Cucumis sativus]

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/100 (75%), Positives = 86/100 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1   MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE+    P
Sbjct: 61  KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISREIQVFEP 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530479|ref|XP_003533808.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/95 (76%), Positives = 86/95 (90%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+P+VPYTI KLC   SKK K+IHCQCS+C+RSGKY KSIF
Sbjct: 1  MAASEENSALFPIFILTIMAIPIVPYTITKLCRFASKKSKSIHCQCSECSRSGKYHKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREV 95
          KRISN STCSNL+L+LLWV+MI+L+YYIK+ SRE+
Sbjct: 61 KRISNVSTCSNLTLLLLWVVMIVLVYYIKTMSREI 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135305|ref|XP_002327614.1| predicted protein [Populus trichocarpa] gi|222836168|gb|EEE74589.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/100 (73%), Positives = 86/100 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA+EENS LFPIFILTIMA+PLVPYT++KLC A SKK K+IHC CS+C RSGKYRKSIF
Sbjct: 1   MAASEENSALFPIFILTIMAIPLVPYTVMKLCRAASKKSKSIHCNCSECVRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRISNFST SNL+L+L+W +MI L+YYIK+ SRE+    P
Sbjct: 61  KRISNFSTYSNLTLILVWAVMIFLVYYIKNMSREIQVFDP 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079782|ref|XP_002305942.1| predicted protein [Populus trichocarpa] gi|118481069|gb|ABK92488.1| unknown [Populus trichocarpa] gi|222848906|gb|EEE86453.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/100 (73%), Positives = 85/100 (85%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA+EENS LFPIFI+TIMA+PLVPYT++KLC A SKK K IHC CS+C RSGKYRKSIF
Sbjct: 1   MAASEENSALFPIFIITIMAIPLVPYTVMKLCRAASKKSKIIHCNCSECLRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRIS FSTCSNL+L+LLWV+MI L+ YIK+ SRE+    P
Sbjct: 61  KRISKFSTCSNLTLILLWVVMIFLVSYIKNMSREIQVFDP 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533991|ref|XP_004173953.1| PREDICTED: translocation protein SEC63 homolog, partial [Cucumis sativus]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 86/100 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1   MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE+    P
Sbjct: 61  KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISREIQVFEP 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556432|ref|XP_003546530.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 86/100 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA+EENS LFPIFILTIMA+P+VPYTI KLC A SKK K+IHC CS+C+RSGKY KSIF
Sbjct: 1   MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCHCSECSRSGKYHKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRISN STCSN +L+LLWV+MI+L+YYIK+ SRE+    P
Sbjct: 61  KRISNVSTCSNFTLLLLWVVMIVLVYYIKTMSREIEIFDP 100

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547707|gb|EAY93529.1| hypothetical protein OsI_15323 [Oryza sativa Indica Group]

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/100 (71%), Positives = 84/100 (84%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA EENS LF IFILT++ALPLVPYTI++LC A + K KTIHC+CS C RSGKYRKSI+
Sbjct: 1   MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHCRCSGCHRSGKYRKSIY 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREVWNMGP 100
           KRISNFSTCSNL+++LLW++MI L+YYIK  SREV    P
Sbjct: 61  KRISNFSTCSNLTILLLWIVMIFLVYYIKHVSREVQVFEP 100

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2016354	687	ATERDJ2A [Arabidopsis thaliana	0.961	0.145	0.58	4.2e-24
TAIR|locus:2127373	661	ATERDJ2B [Arabidopsis thaliana	0.903	0.142	0.553	7.1e-22

TAIR|locus:2016354 ATERDJ2A [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 58/100 (58%), Positives = 69/100 (69%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MAA+EENS LFPIFILTIMA+PLVPYT++KL  A SKK +TIHCQC +C RSGKY++S+F
Sbjct:     1 MAASEENSALFPIFILTIMAIPLVPYTMVKLSGALSKKQRTIHCQCLECDRSGKYKRSLF 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSREVWNMGP 100
             K+ISNFST SN                 K+ SRE     P
Sbjct:    61 KKISNFSTWSNLTLVLLWVVMIFLIYYTKNMSREAQVFDP 100

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2127373 ATERDJ2B [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.1e-22, P = 7.1e-22
 Identities = 52/94 (55%), Positives = 66/94 (70%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MA +EENS LFPIFILT+MA+PLVPYT +KL  AFSKK ++IHCQC +C RSGKY++SI 
Sbjct:     1 MAESEENSVLFPIFILTMMAIPLVPYTFVKLSRAFSKKQRSIHCQCLECDRSGKYKRSIS 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSRE 94
             + IS+F++CSN                 K+ SRE
Sbjct:    61 QSISSFTSCSNLTVVLLWIVMIFLIYHTKNMSRE 94


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.133   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        87   0.00091  102 3  11 22  0.38    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  116 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.30u 0.09s 8.39t   Elapsed:  00:00:02
  Total cpu time:  8.30u 0.09s 8.39t   Elapsed:  00:00:02
  Start:  Fri May 10 14:26:31 2013   End:  Fri May 10 14:26:33 2013

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-05

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 5  EENSQLFPIFILTIM---ALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGK--YRKSI 59
          +E+    P F+L+ +    LP+    I     + SK+++ + C C  C    K   RKSI
Sbjct: 8  DESGLASPYFVLSGLVPVVLPMTYDLIEG--PSASKELRRVRCACQGCRPKDKNVSRKSI 65

Query: 60 FKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          FK          +  ++ W+++  LI  I++   E
Sbjct: 66 FKL-------RKIFTIVGWLVISYLISNIRTLKIE 93

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.97
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.82

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.8e-31  Score=191.18  Aligned_cols=102  Identities=25%  Similarity=0.466  Sum_probs=82.4

Q ss_pred             CCccccCCCchhHHHHHHHhhhhhhhhhhhhhccccccccccccccccchhhHHHHHHHhhhccCcchhHHHHHHHHHHH
Q 034094            1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVI   80 (104)
Q Consensus         1 ~~~YDE~g~~f~yFvlt~l~lvLiP~T~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k~~~~~~~~~~i~lv~gW~l   80 (104)
                      |.||||+|+|||||+||+++++++|+||.++++...+.....+|||.+|.+++...++..+ + .++..+++++++||++
T Consensus         4 ~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~-k-~~~~~~~i~lv~~W~v   81 (230)
T KOG0721|consen    4 DYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPEPPKRKEECQCHGCDKKRRKKAKVSP-K-SISTKRKVFLVVGWAV   81 (230)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHhhhhhhhhhhhhcccCc-c-cchhHHHHHHHHHHHH
Confidence            5799999999999999999999999999999853222222468999999887654333322 2 3333399999999999


Q ss_pred             HHHHHHHHHhcccccCccCCcccC
Q 034094           81 MIILIYYIKSTSREVWNMGPQIQI  104 (104)
Q Consensus        81 ~~~L~y~i~~~~~~~~~fDPyei~  104 (104)
                      +++|+|+|++++++.+.||||||+
T Consensus        82 ~~fL~y~i~~~~~~~~~fDPyEIL  105 (230)
T KOG0721|consen   82 IAFLIYKIMNSRRERQKFDPYEIL  105 (230)
T ss_pred             HHHHHHHHhhhhHHhhcCCcHHhh
Confidence            999999999999888999999996

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.82  E-value=4e-21  Score=150.80  Aligned_cols=97  Identities=21%  Similarity=0.364  Sum_probs=76.7

Q ss_pred             ccccCCCchhHHHHHHHhhhhhhhhhhhhhcccccc-ccccccccccchhhHHHHHHHhhhccCcchhHHHHHHHHHHHH
Q 034094            3 ATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKK-IKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIM   81 (104)
Q Consensus         3 ~YDE~g~~f~yFvlt~l~lvLiP~T~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~k~~~~~~~~~~i~lv~gW~l~   81 (104)
                      ||||+|.+||||+|+.+.++..|+||..+-+....+ ....+|.|+.|..+..+  .+||  +.++. |++++++||.++
T Consensus         6 eYDE~g~~~p~fvL~gl~~vvlpmTY~~i~gpsaSKe~~~vr~~~q~~Rpkdkn--v~rK--SIf~l-R~If~ivgWl~i   80 (610)
T COG5407           6 EYDESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKN--VSRK--SIFKL-RKIFTIVGWLVI   80 (610)
T ss_pred             ccccccccchHHHHhhhhheeeeeehhheeCCcccchhhcchhhhhhcCccccc--hhhh--HHHhh-hHHHHHHHHHHH
Confidence            899999999999999999999999998886553332 33567888888754432  2222  32234 999999999999


Q ss_pred             HHHHHHHHhccccc-CccCCcccC
Q 034094           82 IILIYYIKSTSREV-WNMGPQIQI  104 (104)
Q Consensus        82 ~~L~y~i~~~~~~~-~~fDPyei~  104 (104)
                      ++|.|+|.+.+.+. +.||||||+
T Consensus        81 ~~L~~~I~~~k~~~~~~fDPyEIL  104 (610)
T COG5407          81 SYLISNIRTLKIEYRRGFDPYEIL  104 (610)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhh
Confidence            99999999777776 899999996

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2lif_A	27	Core protein P21; signal peptide, E1 envelope prot	88.05

>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}

Probab=88.05  E-value=0.09  Score=25.58  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=17.6

Q ss_pred             CCchhHHHHHHHhhhhhhhh
Q 034094            8 SQLFPIFILTIMALPLVPYT   27 (104)
Q Consensus         8 g~~f~yFvlt~l~lvLiP~T   27 (104)
                      |--|++|+|+++++.++|..
T Consensus         3 gcsfsiFlLaLlscLt~Pas   22 (27)
T 2lif_A            3 GFPFSIFLLALLSCITVPVS   22 (27)
Confidence            55789999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00