Citrus Sinensis ID: 034105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHcccccccccccHHHHHccHHHHHHHHHHHccccccEEEccc
Coil and Loop (DISEMBL)
mstvsekrnIEDHKRRLLATKFELKRKLYKSLYrdvnlpteVREKYLCKLarlprnssftrlrnrciftGRSRAVYEKFRMSRIVFRSLANQGmlmgvkkasw
Flexible Loop (DISEMBL)
mstvsekrniedhkrrllatkfelkRKLYkslyrdvnlptevREKYLCklarlprnssftrlrnrciftgrsravyekFRMSRIVfrslanqgmlmgvkkasw
Low Complexity Region (SEG)
MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered region (IsUnstruct)
****************LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGML********
Disordered Region (DISOPRED)
*STVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered Region (DISEMBL)
*********IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Disordered Region (DISPRO)
**********EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKA**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
P05716	100	Ribosomal protein S14, mi	N/A	no	0.970	1.0	0.68	4e-34
P14875	99	Ribosomal protein S14, mi	N/A	no	0.951	0.989	0.683	3e-33
P49387	100	Ribosomal protein S14, mi	N/A	no	0.970	1.0	0.64	1e-31
P26873	99	Ribosomal protein S14, mi	N/A	no	0.912	0.949	0.617	4e-28
P46752	99	Ribosomal protein S14, mi	N/A	no	0.893	0.929	0.543	1e-19
Q0ANR3	101	30S ribosomal protein S14	yes	no	0.951	0.970	0.504	2e-19
A7IPQ7	101	30S ribosomal protein S14	yes	no	0.970	0.990	0.475	3e-18
Q28UU1	101	30S ribosomal protein S14	yes	no	0.873	0.891	0.533	3e-18
Q11HR5	101	30S ribosomal protein S14	yes	no	0.902	0.920	0.473	2e-17
B6IRR9	101	30S ribosomal protein S14	yes	no	0.970	0.990	0.435	2e-17

>sp|P05716|RT14_VICFA Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2

 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 87/100 (87%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           +SEKRNI DHKRRLLA K+EL+RKLYK+  +D +LP+++R+K   KL++LPRNSSF R+R
Sbjct: 1   MSEKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVR 60

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCI TGR R+VYE FR+SRIVFRSLA++G LMG+KK+SW
Sbjct: 61  NRCISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100

Vicia faba (taxid: 3906)

>sp|P14875|RT14_OENBE Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 84/98 (85%)

Query: 6   EKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNR 65
           EKRNI DHKRRLLATK+EL+RKLYK+   D  LP+++R+K+  KL++LPRNSSF R+RNR
Sbjct: 2   EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNR 61

Query: 66  CIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           CI TGR R+VYE FR+SRIVFR LA++G LMG+KK+SW
Sbjct: 62  CISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99

Oenothera berteriana (taxid: 3950)

>sp|P49387|RT14_BRANA Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 84/100 (84%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           +SEK+N  DHKRRLLA KFEL+RKLYK+  +D +LP+++R+K+  KL++LPRNSSF R+R
Sbjct: 1   MSEKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVR 60

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCI TGR R+V E FR+ RIVFR LA++G LMG+KK+SW
Sbjct: 61  NRCISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100

Brassica napus (taxid: 3708)

>sp|P26873|RT14_MARPO Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 76/94 (80%)

Query: 10  IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
           I DHKRRLL  K+ELKR  YK++ +D NLP ++R +Y  KL++LPRNSS TR+RNRCIFT
Sbjct: 6   IRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFT 65

Query: 70  GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           GR R+VY+ FR+SRIVFR LA++G L+G+ K+ W
Sbjct: 66  GRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99

Marchantia polymorpha (taxid: 3197)

>sp|P46752|RT14_PROWI Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii GN=RPS14 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 63/92 (68%)

Query: 12  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
           D KRR L  K+E KR LYK+L  D NL  ++R     KL +LPRNSS  R++NRCI TGR
Sbjct: 8   DLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGR 67

Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             +VY+  R+SRI FR LANQG++ G  K+SW
Sbjct: 68  GHSVYKFCRISRIKFRDLANQGLIQGCVKSSW 99

Prototheca wickerhamii (taxid: 3111)

>sp|Q0ANR3|RS14_MARMM 30S ribosomal protein S14 OS=Maricaulis maris (strain MCS10) GN=rpsN PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 3/101 (2%)

Query: 3   TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
           T + +RN+   KR  LA ++  KR+  K++ R+  LP E R     KLA LPRNS+ TR+
Sbjct: 4   TSAIERNL---KRARLAKRYAAKREQLKAIARNQELPVEERFAAQLKLAELPRNSAVTRI 60

Query: 63  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           RNRC  TGR RA Y KFRMSRI  R  A+QGM+ G+ K+SW
Sbjct: 61  RNRCEITGRPRAFYRKFRMSRIAMRDYASQGMIPGMVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Maricaulis maris (strain MCS10) (taxid: 394221)

>sp|A7IPQ7|RS14_XANP2 30S ribosomal protein S14 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsN PE=3 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 4   VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
           +++K  IE + +RR LAT    KR   K++  D  LP E R +   KLA +PRN +  R+
Sbjct: 1   MAKKSAIETNERRRKLATGHAAKRARLKAIVNDKTLPIEERFQATLKLAEMPRNGAKIRI 60

Query: 63  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           RNRC  TGR RA Y K +MSRI  R L NQGM+ G+ K+SW
Sbjct: 61  RNRCEVTGRPRAFYRKLKMSRIALRELGNQGMVPGLVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

>sp|Q28UU1|RS14_JANSC 30S ribosomal protein S14 OS=Jannaschia sp. (strain CCS1) GN=rpsN PE=3 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 57/90 (63%)

Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
           KR  L  K+  KR   K + RD +LP E R K   KLA+LPRNSS TRL NRC  TGR R
Sbjct: 12  KRERLVAKYADKRAALKEIARDEDLPMEDRFKARLKLAKLPRNSSATRLNNRCQLTGRPR 71

Query: 74  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           A Y K +MSRI  R LA+ G + G+ K+SW
Sbjct: 72  AYYRKLKMSRIKLRDLASNGQIPGMVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Jannaschia sp. (strain CCS1) (taxid: 290400)

>sp|Q11HR5|RS14_MESSB 30S ribosomal protein S14 OS=Mesorhizobium sp. (strain BNC1) GN=rpsN PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%)

Query: 11  EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTG 70
           ++++RR +A ++  KR   K++  D   P E R K   +LA LPRNSS TR+RNRC  TG
Sbjct: 9   KNNRRRKMADRYANKRAALKAIVMDQGKPMEERFKAQLQLAALPRNSSKTRIRNRCEVTG 68

Query: 71  RSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           R RA Y K +MSRI  R L +QG++ G+ K+SW
Sbjct: 69  RPRAFYRKLKMSRIALRELGSQGLIPGLVKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

>sp|B6IRR9|RS14_RHOCS 30S ribosomal protein S14 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpsN PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 4   VSEKRNIEDHKRR-LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
           +++K ++E +KRR  +  +   KR+  +++ RD  LP E R + + KLA +PRN S  R+
Sbjct: 1   MAKKSSVEKNKRRRKMVAQQAPKREALRAIARDRTLPPEERFQAVLKLAEMPRNGSKVRI 60

Query: 63  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           RNRC  TGR RA Y KFR+SR+  R LA+ G + G+ K+SW
Sbjct: 61  RNRCELTGRPRAYYRKFRLSRVTLRELASTGQIPGMTKSSW 101

Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
224029765	350	unknown [Zea mays] gi|413941748|gb|AFW74	0.970	0.285	0.77	4e-37
308044577	348	uncharacterized protein LOC100502233 [Ze	0.970	0.287	0.75	2e-36
413921405	407	iron sulfur subunit of succinate dehydro	0.970	0.245	0.75	2e-36
5688945	350	mitochondrial ribosomal protein S14 [Ory	0.970	0.285	0.74	6e-36
125559971	406	hypothetical protein OsI_27631 [Oryza sa	0.970	0.246	0.74	6e-36
28611030	366	chimeric SDH2-RPS14 protein [Triticum ae	0.980	0.275	0.712	9e-36
357144496	349	PREDICTED: succinate dehydrogenase [ubiq	0.970	0.286	0.73	3e-35
255583465	103	30S ribosomal protein S14, putative [Ric	1.0	1.0	0.718	7e-35
224126413	161	predicted protein [Populus trichocarpa]	1.0	0.639	0.679	3e-33
88193121	100	ribosomal protein S14 [Luzula sylvatica]	0.951	0.98	0.683	3e-33

>gi|224029765|gb|ACN33958.1| unknown [Zea mays] gi|413941748|gb|AFW74397.1| hypothetical protein ZEAMMB73_659942 [Zea mays]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 90/100 (90%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSEKRN+ DHKRRLLA KFEL+ KLYK++ RD +LP ++REK+  KL++LPRNSS TRLR
Sbjct: 251 VSEKRNLRDHKRRLLAEKFELRGKLYKAVCRDPDLPLDMREKFRYKLSKLPRNSSMTRLR 310

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 311 NRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 350

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308044577|ref|NP_001183639.1| uncharacterized protein LOC100502233 [Zea mays] gi|4803710|emb|CAB42658.1| iron sulfur subunit of succinate dehydrogenase (truncated) and ribosomal protein S14 [Zea mays] gi|238013616|gb|ACR37843.1| unknown [Zea mays] gi|413921406|gb|AFW61338.1| iron sulfur subunit of succinate dehydrogenase and ribosomal protein S14 Precursor [Zea mays]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 90/100 (90%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSEKRN+ DHKRRLLA K+EL+ K+YK++ RD +LP ++REK+  KL++LPRNSS TRLR
Sbjct: 249 VSEKRNLRDHKRRLLAEKYELRGKMYKAVCRDPDLPLDMREKFRYKLSKLPRNSSMTRLR 308

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 309 NRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 348

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413921405|gb|AFW61337.1| iron sulfur subunit of succinate dehydrogenase and ribosomal protein S14 Precursor [Zea mays]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 90/100 (90%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSEKRN+ DHKRRLLA K+EL+ K+YK++ RD +LP ++REK+  KL++LPRNSS TRLR
Sbjct: 249 VSEKRNLRDHKRRLLAEKYELRGKMYKAVCRDPDLPLDMREKFRYKLSKLPRNSSMTRLR 308

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSRAVY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 309 NRCIFTGRSRAVYKKFRMSRIVFRTLANKGELMGVKKASW 348

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5688945|dbj|BAA82748.1| mitochondrial ribosomal protein S14 [Oryza sativa Japonica Group] gi|5688950|dbj|BAA82751.1| mitochondrial ribosomal portein S14 [Oryza sativa Japonica Group] gi|42407916|dbj|BAD09056.1| mitochondrial ribosomal protein S14 [Oryza sativa Japonica Group] gi|215734910|dbj|BAG95632.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765431|dbj|BAG87128.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 90/100 (90%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSEKRN+ DHKRRLLA K+ELK KLYK++ RD +LP ++++++  KL++LPRNSS TRLR
Sbjct: 251 VSEKRNLLDHKRRLLAAKYELKGKLYKAVCRDPDLPADMQDQFRYKLSKLPRNSSMTRLR 310

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSRAVY+KFRMSRIVFRSLAN+G L+GVKKASW
Sbjct: 311 NRCIFTGRSRAVYKKFRMSRIVFRSLANKGELLGVKKASW 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125559971|gb|EAZ05419.1| hypothetical protein OsI_27631 [Oryza sativa Indica Group] gi|125602012|gb|EAZ41337.1| hypothetical protein OsJ_25852 [Oryza sativa Japonica Group]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 90/100 (90%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSEKRN+ DHKRRLLA K+ELK KLYK++ RD +LP ++++++  KL++LPRNSS TRLR
Sbjct: 251 VSEKRNLLDHKRRLLAAKYELKGKLYKAVCRDPDLPADMQDQFRYKLSKLPRNSSMTRLR 310

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSRAVY+KFRMSRIVFRSLAN+G L+GVKKASW
Sbjct: 311 NRCIFTGRSRAVYKKFRMSRIVFRSLANKGELLGVKKASW 350

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28611030|emb|CAD62368.1| chimeric SDH2-RPS14 protein [Triticum aestivum]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 90/101 (89%)

Query: 3   TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
           +VSEKRN+ DHKRR+LA K+EL+ KLYK++ RD  LP+++R+K+  KL++LPRNS+ TRL
Sbjct: 266 SVSEKRNLRDHKRRILAAKYELRGKLYKAVCRDPELPSDMRDKFRYKLSKLPRNSNMTRL 325

Query: 63  RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           RNRCIFTGRSR VY+KFRMSRIVFR+LAN+G LMGVKKASW
Sbjct: 326 RNRCIFTGRSRGVYQKFRMSRIVFRTLANKGELMGVKKASW 366

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144496|ref|XP_003573313.1| PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like isoform 2 [Brachypodium distachyon]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 88/100 (88%)

Query: 4   VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLR 63
           VSE RN+ DHKRRLLA K+EL+ KLYKS+ RD +LP E+R+K+  KL++LPRNS+ TRLR
Sbjct: 250 VSENRNMRDHKRRLLAAKYELRGKLYKSVCRDPDLPLEMRDKFRYKLSKLPRNSNMTRLR 309

Query: 64  NRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           NRCIFTGRSR VY+KFRMSRIVFR+LAN+G +MGVKKASW
Sbjct: 310 NRCIFTGRSRGVYKKFRMSRIVFRTLANKGEVMGVKKASW 349

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

>gi|255583465|ref|XP_002532491.1| 30S ribosomal protein S14, putative [Ricinus communis] gi|223527790|gb|EEF29890.1| 30S ribosomal protein S14, putative [Ricinus communis]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 87/103 (84%)

Query: 1   MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFT 60
           MS   E R I+D++RRLLA+KFELKR L+K+L RD  LPTE+REK+  KL++LPRNSSFT
Sbjct: 1   MSVYEENRCIKDNERRLLASKFELKRNLFKALVRDPELPTEMREKFQHKLSKLPRNSSFT 60

Query: 61  RLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           R+RNRCIFTGR RAVY  FRMSRIVFR LA+QGML G+KKASW
Sbjct: 61  RVRNRCIFTGRPRAVYNLFRMSRIVFRELASQGMLNGIKKASW 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126413|ref|XP_002319832.1| predicted protein [Populus trichocarpa] gi|222858208|gb|EEE95755.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 83/103 (80%)

Query: 1   MSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFT 60
           M    E RNI D+ RRLLA KFELKR LYK+L RD  LP E+RE +  KLA+LPRNSSFT
Sbjct: 59  MEVRKENRNIRDNHRRLLAEKFELKRNLYKALVRDPTLPQEMRELHAYKLAKLPRNSSFT 118

Query: 61  RLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           R+RNRC+FTGR R VY+ FRMSR+VFRSLA+QG+L G++KASW
Sbjct: 119 RVRNRCVFTGRPRGVYQLFRMSRLVFRSLASQGLLEGIRKASW 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88193121|gb|ABD42935.1| ribosomal protein S14 [Luzula sylvatica]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 88/98 (89%)

Query: 6   EKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNR 65
           EKRNI DHKRRLLA K+EL+RKLYK+L +D +LP+++R+K+  KL++LPRNSSF+R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKALCQDPDLPSDMRDKHRSKLSKLPRNSSFSRVRNR 62

Query: 66  CIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           CI+TGR R+VYE FR+SRIVFR LA++G LMG+KK+SW
Sbjct: 63  CIYTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

Source: Luzula sylvatica

Species: Luzula sylvatica

Genus: Luzula

Family: Juncaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2062310	164	RPS14 "mitochondrial ribosomal	0.941	0.591	0.639	1.8e-30
TIGR_CMR|SPO_0498	101	SPO_0498 "ribosomal protein S1	0.970	0.990	0.445	1.1e-16
MGI|MGI:1928141	128	Mrps14 "mitochondrial ribosoma	0.932	0.75	0.427	1.3e-15
RGD|1309432	128	Mrps14 "mitochondrial ribosoma	0.932	0.75	0.427	1.3e-15
TIGR_CMR|APH_0293	101	APH_0293 "ribosomal protein S1	0.912	0.930	0.412	2e-15
TIGR_CMR|ECH_0422	101	ECH_0422 "ribosomal protein S1	0.970	0.990	0.386	2e-15
UNIPROTKB|E2RMB2	128	MRPS14 "Uncharacterized protei	0.912	0.734	0.425	5.4e-15
UNIPROTKB|F1S721	128	MRPS14 "Uncharacterized protei	0.912	0.734	0.425	5.4e-15
UNIPROTKB|I3L904	128	MRPS14 "Uncharacterized protei	0.912	0.734	0.425	5.4e-15
UNIPROTKB|Q6B860	128	MRPS14 "28S ribosomal protein	0.932	0.75	0.416	6.9e-15

TAIR|locus:2062310 RPS14 "mitochondrial ribosomal protein S14" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 62/97 (63%), Positives = 82/97 (84%)

Query:     7 KRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRC 66
             KRN  DH+RRLLA +FEL+RKLYK+  +D +LP+E+R+K   KL++LPRNS+F R+RNRC
Sbjct:    68 KRNSADHRRRLLAARFELRRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRNRC 127

Query:    67 IFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             +FTGRSR+V E FR+SRIVFR LA++G LMG+ K+SW
Sbjct:   128 VFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=TAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TIGR_CMR|SPO_0498 SPO_0498 "ribosomal protein S14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/101 (44%), Positives = 61/101 (60%)

Query:     4 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
             +++K  IE + KR  L  ++  KR   K +  D + P E R K   KLA+LPRNSS TRL
Sbjct:     1 MAKKSMIEREKKRERLVAQYAAKRAELKEIANDESRPMEERFKARLKLAKLPRNSSATRL 60

Query:    63 RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              NRC  TGR  A Y K ++SRI+ R L + G + G+ K+SW
Sbjct:    61 HNRCQLTGRPHAYYRKLKVSRIMLRELGSAGQIPGMVKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

MGI|MGI:1928141 Mrps14 "mitochondrial ribosomal protein S14" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:     8 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 67
             R + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDLKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCV 92

Query:    68 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              T R R V  ++R+SRIVFR LA+ G+L GV++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 128

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1309432 Mrps14 "mitochondrial ribosomal protein S14" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:     8 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 67
             R + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCV 92

Query:    68 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              T R R V  ++R+SRIVFR LA+ G+L GV++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW 128

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

TIGR_CMR|APH_0293 APH_0293 "ribosomal protein S14p/S29e" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:     7 KRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRC 66
             +RN+   KR  ++     KRK   ++ +D +L    R     KL+++PR+SS+ R+RNRC
Sbjct:     8 QRNL---KRVAISAALSEKRKALVAIIKDESLSMSERFAAQLKLSKMPRDSSYIRIRNRC 64

Query:    67 IFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             + TGR R  Y KF+MSRIV R L + G + G+ K+SW
Sbjct:    65 LITGRPRGYYRKFKMSRIVLRQLGSIGQIPGLTKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|ECH_0422 ECH_0422 "ribosomal protein S14p" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/101 (38%), Positives = 65/101 (64%)

Query:     4 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRL 62
             +S K  I+ + +R+ +  + + KR+  K++ +D ++    R     KL++LPR+SS+ R+
Sbjct:     1 MSRKSVIQRNLKRISICNRLKNKREELKAIIKDQSISMNDRFLAQVKLSKLPRDSSYIRI 60

Query:    63 RNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             RNRC+ TGR R  Y KF++SRIV R L + G + G+ K+SW
Sbjct:    61 RNRCLITGRPRGCYRKFKVSRIVLRQLGSIGQIPGLTKSSW 101

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|E2RMB2 MRPS14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    10 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADGEIAALPRDSCPVRIRNRCVMT 94

Query:    70 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAVW 128

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1S721 MRPS14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    10 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADEEIASLPRDSCPVRIRNRCVMT 94

Query:    70 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAMW 128

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3L904 MRPS14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/94 (42%), Positives = 61/94 (64%)

Query:    10 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
             + D KRR +A ++  +R    SL ++  LP +++E    ++A LPR+S   R+RNRC+ T
Sbjct:    35 LRDVKRRKMAYEYADERLRINSLRKNTILPKDLQEVADEEIASLPRDSCPVRIRNRCVMT 94

Query:    70 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              R R V  ++R+SRIVFR LA+ G L GV++A W
Sbjct:    95 SRPRGVKRRWRLSRIVFRHLADHGQLSGVQRAMW 128

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q6B860 MRPS14 "28S ribosomal protein S14, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query:     8 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCI 67
             R + D KRR +A ++  +R    SL ++  LP  ++E    ++A LPR+S   R+RNRC+
Sbjct:    33 RMLRDVKRRKMAYEYADERLRINSLRKNTILPKHLQEVADEEIAALPRDSCPVRIRNRCV 92

Query:    68 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
              T R R V  ++R+SRIVFR LA+ G L G+++A W
Sbjct:    93 MTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRAIW 128

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49387	RT14_BRANA	No assigned EC number	0.64	0.9708	1.0	N/A	no
Q2YRA8	RS14_BRUA2	No assigned EC number	0.4421	0.9126	0.9306	yes	no
Q2K9K3	RS14_RHIEC	No assigned EC number	0.4516	0.9029	0.9207	yes	no
Q2RQX3	RS14_RHORT	No assigned EC number	0.4631	0.9126	0.9306	yes	no
B5ZYU8	RS14_RHILW	No assigned EC number	0.4516	0.9029	0.9207	yes	no
B2S666	RS14_BRUA1	No assigned EC number	0.4421	0.9126	0.9306	yes	no
P14875	RT14_OENBE	No assigned EC number	0.6836	0.9514	0.9898	N/A	no
Q9A8U0	RS14_CAUCR	No assigned EC number	0.4772	0.8543	0.8712	yes	no
Q92QF7	RS14_RHIME	No assigned EC number	0.4838	0.9029	0.9207	yes	no
Q28UU1	RS14_JANSC	No assigned EC number	0.5333	0.8737	0.8910	yes	no
Q57CS1	RS14_BRUAB	No assigned EC number	0.4421	0.9126	0.9306	yes	no
Q07KN1	RS14_RHOP5	No assigned EC number	0.4356	0.9708	0.9900	yes	no
Q211G1	RS14_RHOPB	No assigned EC number	0.4356	0.9708	0.9900	yes	no
A7IPQ7	RS14_XANP2	No assigned EC number	0.4752	0.9708	0.9900	yes	no
B3PWT4	RS14_RHIE6	No assigned EC number	0.4516	0.9029	0.9207	yes	no
Q6MAR9	RS14_PARUW	No assigned EC number	0.4313	0.9611	0.9801	yes	no
P05716	RT14_VICFA	No assigned EC number	0.68	0.9708	1.0	N/A	no
B3CT18	RS14_ORITI	No assigned EC number	0.4731	0.9029	0.9207	yes	no
B0CH19	RS14_BRUSI	No assigned EC number	0.4421	0.9126	0.9306	yes	no
Q0BYC7	RS14_HYPNA	No assigned EC number	0.4455	0.9708	0.9900	yes	no
Q98N44	RS14_RHILO	No assigned EC number	0.4516	0.9029	0.9207	yes	no
B6IRR9	RS14_RHOCS	No assigned EC number	0.4356	0.9708	0.9900	yes	no
Q2IXP7	RS14_RHOP2	No assigned EC number	0.4455	0.9708	0.9900	yes	no
A6U872	RS14_SINMW	No assigned EC number	0.4838	0.9029	0.9207	yes	no
A8LM70	RS14_DINSH	No assigned EC number	0.4554	0.9708	0.9900	yes	no
A9M5N7	RS14_BRUC2	No assigned EC number	0.4421	0.9126	0.9306	yes	no
B4R8N0	RS14_PHEZH	No assigned EC number	0.4534	0.8349	0.8514	yes	no
A5CCJ9	RS14_ORITB	No assigned EC number	0.4731	0.9029	0.9207	yes	no
A5VQZ3	RS14_BRUO2	No assigned EC number	0.4421	0.9126	0.9306	yes	no
B0UHV6	RS14_METS4	No assigned EC number	0.4356	0.9708	0.9900	yes	no
Q0ANR3	RS14_MARMM	No assigned EC number	0.5049	0.9514	0.9702	yes	no
A1B040	RS14_PARDP	No assigned EC number	0.4673	0.8932	0.9108	yes	no
Q134U2	RS14_RHOPS	No assigned EC number	0.4554	0.9708	0.9900	yes	no
Q1GK16	RS14_RUEST	No assigned EC number	0.4673	0.8932	0.9108	yes	no
Q11HR5	RS14_MESSB	No assigned EC number	0.4731	0.9029	0.9207	yes	no
P46752	RT14_PROWI	No assigned EC number	0.5434	0.8932	0.9292	N/A	no
Q3J5Q9	RS14_RHOS4	No assigned EC number	0.4555	0.8737	0.8910	yes	no
P66399	RS14_BRUME	No assigned EC number	0.4421	0.9126	0.9306	yes	no
P26873	RT14_MARPO	No assigned EC number	0.6170	0.9126	0.9494	N/A	no
Q5LW45	RS14_RUEPO	No assigned EC number	0.4565	0.8932	0.9108	yes	no
P66400	RS14_BRUSU	No assigned EC number	0.4421	0.9126	0.9306	yes	no
B1LWR3	RS14_METRJ	No assigned EC number	0.4356	0.9708	0.9900	yes	no
B0T2D5	RS14_CAUSK	No assigned EC number	0.4651	0.8349	0.8514	yes	no
A9CIG1	RS14_AGRT5	No assigned EC number	0.4631	0.9126	0.9306	yes	no
A4WVJ5	RS14_RHOS5	No assigned EC number	0.4555	0.8737	0.8910	yes	no
A3PGM4	RS14_RHOS1	No assigned EC number	0.4555	0.8737	0.8910	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
PRK08881	101	PRK08881, rpsN, 30S ribosomal protein S14; Reviewe	2e-29
CHL00074	100	CHL00074, rps14, ribosomal protein S14	1e-22
pfam00253	53	pfam00253, Ribosomal_S14, Ribosomal protein S14p/S	5e-19
COG0199	61	COG0199, RpsN, Ribosomal protein S14 [Translation,	6e-19
PRK08061	61	PRK08061, rpsN, 30S ribosomal protein S14; Reviewe	2e-12
PRK06911	100	PRK06911, rpsN, 30S ribosomal protein S14; Reviewe	7e-07

>gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed

 Score =  100 bits (252), Expect = 2e-29
 Identities = 47/92 (51%), Positives = 58/92 (63%)

Query: 12  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
           + KR+ L  K+  KR   K++  D NL  E R +   KL +LPRNSS TRLRNRC  TGR
Sbjct: 10  EKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGR 69

Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            R  Y KF +SRI  R LA++G + GV KASW
Sbjct: 70  PRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101

Length = 101

>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14

 Score = 83.7 bits (208), Expect = 1e-22
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
           KR+ L  K+ LKR+  K   + V+  +E  E +  KL  LPRNS+ TRL NRC  TGR R
Sbjct: 12  KRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH-GKLQSLPRNSAPTRLHNRCFLTGRPR 70

Query: 74  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             Y  F +SR V R +A+  +L GV K+SW
Sbjct: 71  GNYRDFGLSRHVLREMAHACLLPGVTKSSW 100

Length = 100

>gnl|CDD|201115 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e

 Score = 73.3 bits (181), Expect = 5e-19
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query: 49  KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKK 100
           KL++LPRNSS TR+RNRC+ TGR R V  KF +SRI FR LA++G++ GVKK
Sbjct: 2   KLSKLPRNSSPTRIRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKK 53

This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes. Length = 53

>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

 Score = 73.0 bits (180), Expect = 6e-19
 Identities = 32/61 (52%), Positives = 36/61 (59%)

Query: 43  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
           R     KL  LPR  S  R RNRC   GR R V  KF + RI FR LA++G + GVKKAS
Sbjct: 1   RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60

Query: 103 W 103
           W
Sbjct: 61  W 61

Length = 61

>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 56.8 bits (138), Expect = 2e-12
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 60  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            R   RC   GR  +VY KF + RI FR LA +G + GVKKASW
Sbjct: 18  VRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61

Length = 61

>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed

 Score = 43.5 bits (102), Expect = 7e-07
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 10  IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
           + + KR  L  K+  +R   K L +  +   +V  +   KLA+LP NS+  R   RC   
Sbjct: 8   MRESKRAKLVEKYRQRRNELKQLIKSSD-DFQVIMESQAKLAKLPVNSNPVRYVTRCKQC 66

Query: 70  GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
           GR  AVY KF + RI  R     G + G +K+SW
Sbjct: 67  GRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PRK06911	100	rpsN 30S ribosomal protein S14; Reviewed	100.0
PRK08881	101	rpsN 30S ribosomal protein S14; Reviewed	100.0
CHL00074	100	rps14 ribosomal protein S14	100.0
KOG1741	103	consensus Mitochondrial/chloroplast ribosomal prot	100.0
COG0199	61	RpsN Ribosomal protein S14 [Translation, ribosomal	99.95
PF00253	55	Ribosomal_S14: Ribosomal protein S14p/S29e; InterP	99.94
PRK08061	61	rpsN 30S ribosomal protein S14; Reviewed	99.93
PRK05766	52	rps14P 30S ribosomal protein S14P; Reviewed	99.61
PTZ00218	54	40S ribosomal protein S29; Provisional	98.59
KOG3506	56	consensus 40S ribosomal protein S29 [Translation,	95.63
TIGR01764	49	excise DNA binding domain, excisionase family. An	85.98

>PRK06911 rpsN 30S ribosomal protein S14; Reviewed

Probab=100.00  E-value=3.6e-47  Score=253.43  Aligned_cols=99  Identities=33%  Similarity=0.505  Sum_probs=96.4

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034105            4 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS   82 (103)
Q Consensus         4 m~~~-~~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS   82 (103)
                      ||++ .++||++++.++++||.+|.+||+++.|+++|+++ ++++.+|++||+||||||++|||++||||||||++||||
T Consensus         1 Makks~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~~-~~a~~kL~~lPrnss~~R~rNRC~~TGR~Rgv~r~FgLs   79 (100)
T PRK06911          1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLIKSSDDFQVI-MESQAKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLC   79 (100)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHhCCCccCcchhhcccCCCCCCcccccccCch
Confidence            7755 47899999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 034105           83 RIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        83 R~~fR~~a~~G~lpGv~KssW  103 (103)
                      |+.|||+|+.|+||||+||||
T Consensus        80 Ri~~Rela~~G~lPGv~KaSW  100 (100)
T PRK06911         80 RICLRQQLMVGNIPGGRKSSW  100 (100)
T ss_pred             HHHHHHHHHcCCCCCeecccC
Confidence            999999999999999999999

>PRK08881 rpsN 30S ribosomal protein S14; Reviewed

Probab=100.00  E-value=3.6e-47  Score=253.87  Aligned_cols=100  Identities=48%  Similarity=0.705  Sum_probs=97.5

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034105            4 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS   82 (103)
Q Consensus         4 m~~~-~~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS   82 (103)
                      ||++ .++||.++|+++++||.+|.+||++++|+++|.++|++++.+|++||+|||+|+++|||++||||||||++||||
T Consensus         1 Makks~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~~r~~~~~kL~~lPr~ss~tRi~NRC~~TGR~Rgv~r~F~Ls   80 (101)
T PRK08881          1 MAKKSMIAREKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLS   80 (101)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCcccchHHHhccccCCCCCCccccCcCch
Confidence            7754 578999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 034105           83 RIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        83 R~~fR~~a~~G~lpGv~KssW  103 (103)
                      ||+|||+|+.|+||||+||||
T Consensus        81 Ri~fRela~~G~lpGv~KsSW  101 (101)
T PRK08881         81 RIKLRELAHRGEIPGVVKASW  101 (101)
T ss_pred             HHHHHHHHHcCCCCCeecccC
Confidence            999999999999999999999

>CHL00074 rps14 ribosomal protein S14

Probab=100.00  E-value=5e-46  Score=248.01  Aligned_cols=99  Identities=41%  Similarity=0.639  Sum_probs=96.3

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034105            4 VSEK-RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS   82 (103)
Q Consensus         4 m~~~-~~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS   82 (103)
                      ||++ .+.||.++|.++++||.+|.+||+|+.|.++|.+ +++++.+|++||+|||+|+++|||++||||||||++||||
T Consensus         1 Mak~s~i~rd~krr~l~~k~~~kR~~lK~i~~~~~l~~~-r~~a~~kL~~lpr~ss~tRi~NRC~~TGR~Rgv~r~F~Ls   79 (100)
T CHL00074          1 MAKKSLIQREKKRQKLVQKYHLKRRSLKKEIKKVSSLSE-KWEIHGKLQSLPRNSAPTRLHNRCFLTGRPRGNYRDFGLS   79 (100)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHhCCcccchHHHhccccCCCCCCccccCcCch
Confidence            7754 5789999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 034105           83 RIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        83 R~~fR~~a~~G~lpGv~KssW  103 (103)
                      |++|||+|+.|+||||+||||
T Consensus        80 Ri~~Re~a~~G~ipGv~KaSW  100 (100)
T CHL00074         80 RHVLREMAHACLLPGVTKSSW  100 (100)
T ss_pred             HHHHHHHHHcCCCCCcccccC
Confidence            999999999999999999999

>KOG1741 consensus Mitochondrial/chloroplast ribosomal protein S14/S29 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-42  Score=228.37  Aligned_cols=101  Identities=48%  Similarity=0.795  Sum_probs=98.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034105            3 TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS   82 (103)
Q Consensus         3 ~m~~~~~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS   82 (103)
                      .-.++++.||.++|+++++||..|..+|+|.+|++||.+.|.++.++|+++|+||.||+|+|||+.|||+|||++.||||
T Consensus         3 ~~~~~r~~Rd~krRkl~~e~~~~R~slk~i~knp~LP~~~r~ea~~kl~alPrns~ptrI~NRCv~TGR~R~v~r~frLs   82 (103)
T KOG1741|consen    3 GAKKWRILRDVKRRKLFKEYELERRSLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRIKNRCVFTGRPRGVYRDFRLS   82 (103)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHhcCccccchHHHHHHHHhcCCcccccchhhhH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 034105           83 RIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        83 R~~fR~~a~~G~lpGv~KssW  103 (103)
                      ||.||++|+.|.||||+||||
T Consensus        83 R~~FR~~A~~~~LpGv~rasW  103 (103)
T KOG1741|consen   83 RHVFRELADAGALPGVTRASW  103 (103)
T ss_pred             HHHHHHHHHhccCcCcccccC
Confidence            999999999999999999999

>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.5e-29  Score=153.30  Aligned_cols=59  Identities=53%  Similarity=0.750  Sum_probs=57.0

Q ss_pred             HHHHHHhcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 034105           45 KYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        45 ~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~KssW  103 (103)
                      .+...|.++|++++++++.|||.+|||||||+|+|+|||++|||+|+.|+||||+||||
T Consensus         3 ~a~~~~~~~p~~~~~~r~~nRC~~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW   61 (61)
T COG0199           3 MAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW   61 (61)
T ss_pred             hhhhhhhcCCCCCccccccccccccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence            46777899999999999999999999999999999999999999999999999999999

>PF00253 Ribosomal_S14: Ribosomal protein S14p/S29e; InterPro: IPR001209 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=7e-28  Score=145.13  Aligned_cols=54  Identities=65%  Similarity=1.030  Sum_probs=52.2

Q ss_pred             HHhcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCccccc
Q 034105           49 KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS  102 (103)
Q Consensus        49 ~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~Kss  102 (103)
                      +|+++|+++++++++|||++|||+|||+++|+|||++|||+|+.|+||||+|||
T Consensus         2 kl~~~p~~s~~~r~~nrC~~tGR~rgv~r~f~lsR~~fR~~a~~g~l~G~~KsS   55 (55)
T PF00253_consen    2 KLSKLPRNSSPTRIKNRCVITGRSRGVIRKFGLSRICFRELASKGLLPGVKKSS   55 (55)
T ss_dssp             HSTSSSSSSSCTGSCSSBSSSCSSSSBETTTSSBHHHHHHHHHTTSSTTEEES-
T ss_pred             hhhhCCCCCCCCCCCeecccCCCceeeeccccccHHHHHHHHHcCCCCCEEeCC
Confidence            689999999999999999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. S14 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S14 is known to be required for the assembly of 30S particles and may also be responsible for determining the conformation of 16S rRNA at the A site. It belongs to a family of ribosomal proteins [, ] that include, bacterial, algal and plant chloroplast, yeast mitochondrial, cyanelle and archael, Methanococcus vannielii S14's, as well as yeast mitochondrial MRP2, yeast YS29A/B and mammalian S29.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_N 2XZM_N 1S1H_N 3IZ6_N 2YKR_N 2QBB_N 3I1Z_N 3OAQ_N 3R8O_N 2Z4K_N ....

>PRK08061 rpsN 30S ribosomal protein S14; Reviewed

Probab=99.93  E-value=9e-27  Score=142.74  Aligned_cols=58  Identities=45%  Similarity=0.748  Sum_probs=53.5

Q ss_pred             HHHHHHHhcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 034105           44 EKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        44 ~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~KssW  103 (103)
                      +....+.++.|++  +|+++|||++|||+|||+++|||||++|||+|+.|+||||+||||
T Consensus         4 ~~~~~k~~~~~k~--~~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW   61 (61)
T PRK08061          4 KSLIAKAKRKPKF--KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW   61 (61)
T ss_pred             hHHHHHhhcCCCC--CcccceeeecCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence            4556677888885  699999999999999999999999999999999999999999999

>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed

Probab=99.61  E-value=3.3e-16  Score=93.36  Aligned_cols=41  Identities=22%  Similarity=0.523  Sum_probs=39.3

Q ss_pred             cCCCCCCccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034105           52 RLPRNSSFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ   92 (103)
Q Consensus        52 ~lpr~ss~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~   92 (103)
                      .+|+++++++++|||++|||++||+++||  |||++|||+|..
T Consensus         3 ~~p~~~~~~r~~nrC~~~Gr~rgvirkf~l~lcR~~FRe~A~~   45 (52)
T PRK05766          3 KPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPK   45 (52)
T ss_pred             CCCCCCCCCCCCceeecCCCCceeHHhhCCcccHHHHHHHHHH
Confidence            57999999999999999999999999999  999999999975

>PTZ00218 40S ribosomal protein S29; Provisional

Probab=98.59  E-value=2.2e-08  Score=59.97  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CCCCCCccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034105           53 LPRNSSFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ   92 (103)
Q Consensus        53 lpr~ss~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~   92 (103)
                      -|++-.  +-.++|.++|+++|++|+||  |||++|||+|..
T Consensus         8 hpr~yG--kGsr~C~vCg~~~gliRkygL~~CRqCFRe~A~~   47 (54)
T PTZ00218          8 HPRTYG--KGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAEL   47 (54)
T ss_pred             CCCcCC--CCCCeeecCCCcchhhhhcCcchhhHHHHHhhHh
Confidence            455433  44689999999999999999  999999999974

>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.0041  Score=37.36  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=27.1

Q ss_pred             ccccccccCCCcchhhcccC--ccHHHHHHhhh
Q 034105           61 RLRNRCIFTGRSRAVYEKFR--MSRIVFRSLAN   91 (103)
Q Consensus        61 ri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~   91 (103)
                      +-..-|.+++..+|.+++||  +||.+||+.|.
T Consensus        16 ~GsrsC~vCsn~~gLIrKYGL~vcr~cfr~~a~   48 (56)
T KOG3506|consen   16 QGSRSCRVCSNRHGLIRKYGLNVCRQCFREYAN   48 (56)
T ss_pred             CCCcceeeeccchhHHHHhhhHHhHHHHHhhcc
Confidence            34567999999999999999  78999999875

>TIGR01764 excise DNA binding domain, excisionase family

Probab=85.98  E-value=0.57  Score=25.41  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.4

Q ss_pred             hhcccCccHHHHHHhhhcCCCCCccc
Q 034105           75 VYEKFRMSRIVFRSLANQGMLMGVKK  100 (103)
Q Consensus        75 v~r~f~lSR~~fR~~a~~G~lpGv~K  100 (103)
                      +-..+|+|+-.+++++..|.||+++.
T Consensus         7 ~a~~lgis~~ti~~~~~~g~i~~~~~   32 (49)
T TIGR01764         7 AAEYLGVSKDTVYRLIHEGELPAYRV   32 (49)
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCeEEe
Confidence            44678999999999999999998753

An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1p6g_N	100	Real Space Refined Coordinates Of The 30s Subunit F		8e-14
1vs5_N	101	Crystal Structure Of The Bacterial Ribosome From Es		8e-14
3fih_N	96	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		6e-12
2gy9_N	61	Structure Of The 30s Subunit Of A Pre-Translocation		1e-08
3bbn_N	100	Homology Model For The Spinach Chloroplast 30s Subu		1e-07
1i94_N	60	Crystal Structures Of The Small Ribosomal Subunit W		9e-07
1fjg_N	61	Structure Of The Thermus Thermophilus 30s Ribosomal		1e-06

>pdb|1P6G|N Chain N, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 100

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%)
Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
           KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 11  KRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 70
Query: 74  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
               KF +SRI  R  A +G + G+KKASW
Sbjct: 71  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 100

>pdb|1VS5|N Chain N, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 101

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%)
Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
           KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 12  KRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 71
Query: 74  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
               KF +SRI  R  A +G + G+KKASW
Sbjct: 72  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 101

>pdb|3FIH|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 96

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
           KR  LA K+  KR   K++  DVN     R   + KL  LPR+SS +R RNRC  TGR  
Sbjct: 11  KRVALADKYFAKRAELKAIISDVN----ARWNAVLKLQTLPRDSSPSRQRNRCRQTGRPH 66
Query: 74  AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
               KF +SRI  R  A +G + G+KKASW
Sbjct: 67  GFLRKFGLSRIKVREAAMRGEIPGLKKASW 96

>pdb|2GY9|N Chain N, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 61

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 43  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
           R   + KL  LPR+SS +R RNRC  TGR      KF +SRI  R  A +G + G+KKAS
Sbjct: 1   RWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKAS 60
Query: 103 W 103
           W
Sbjct: 61  W 61

>pdb|3BBN|N Chain N, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 100

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 14  KRRLLATKFELKRKLYKSLYRDVNLPTEVREKY--LCKLARLPRNSSFTRLRNRCIFTGR 71
           KRR L  K+ L R+  K   R V   T + +K+    KL   PRNS+  RL  RC  TGR
Sbjct: 12  KRRNLEQKYHLIRRSSKQEIRKV---TSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGR 68
Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            RA    F +S  + R + +  +L G  ++SW
Sbjct: 69  PRANIRDFGLSGHILREMVHTCLLPGATRSSW 100

>pdb|1I94|N Chain N, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 60

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 60  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            R   RC+  GR+R+VY  F + RI  R LA++G L GV+KASW
Sbjct: 17  VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60

>pdb|1FJG|N Chain N, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 61

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 60  TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            R   RC+  GR+R+VY  F + RI  R LA++G L GV+KASW
Sbjct: 18  VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3r8n_N	100	30S ribosomal protein S14; protein biosynthesis, R	1e-29
3bbn_N	100	Ribosomal protein S14; small ribosomal subunit, sp	9e-29
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	1e-19

>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 100

 Score = 98.7 bits (247), Expect = 9e-29
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 12  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
           + KRR L  K+ L R+  K   R        + +   KL   PRNS+  RL  RC  TGR
Sbjct: 10  EKKRRNLEQKYHLIRRSSKQEIRK-VTSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGR 68

Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
            RA    F +S  + R + +  +L G  ++SW
Sbjct: 69  PRANIRDFGLSGHILREMVHTCLLPGATRSSW 100

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ... Length = 61

 Score = 74.6 bits (184), Expect = 1e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 43  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 3   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 60

Query: 103 W 103
           W
Sbjct: 61  W 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3r8n_N	100	30S ribosomal protein S14; protein biosynthesis, R	100.0
3bbn_N	100	Ribosomal protein S14; small ribosomal subunit, sp	100.0
2vqe_N	61	30S ribosomal protein S14 type Z; tRNA-binding, rR	99.94
2xzm_N	55	RPS29E; ribosome, translation; 3.93A {Tetrahymena	99.43
3j20_P	56	30S ribosomal protein S14P type Z; archaea, archae	99.2
3iz6_N	56	40S ribosomal protein S29 (S14P); eukaryotic ribos	99.15
3u5c_d	56	S36, YS29, 40S ribosomal protein S29-A; translatio	99.12

>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.9e-45  Score=244.13  Aligned_cols=99  Identities=33%  Similarity=0.517  Sum_probs=95.8

Q ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCcc
Q 034105            4 VSEKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMS   82 (103)
Q Consensus         4 m~~~~-~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lS   82 (103)
                      ||+++ |+||++||+++++||.+|.+||++++|++ |.+++++++.+|++||+||++|+++|||++|||||||+++||||
T Consensus         1 Makks~i~Rd~kRr~l~~ky~~kR~~LK~~~~~~~-~~~~r~~a~~kL~~lPRns~~~r~~nRC~~tGR~rg~~r~fgls   79 (100)
T 3bbn_N            1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVT-SLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS   79 (100)
T ss_dssp             -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSCC-SSSCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCcccccccccccccCCCCCceeecccCcH
Confidence            88776 56999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCcccccC
Q 034105           83 RIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        83 R~~fR~~a~~G~lpGv~KssW  103 (103)
                      |++|||+|+.|+||||+||||
T Consensus        80 R~~fRe~a~~g~lpGv~KssW  100 (100)
T 3bbn_N           80 GHILREMVHTCLLPGATRSSW  100 (100)
T ss_dssp             TTHHHHHHTTTCSSSCEECCC
T ss_pred             HHHHHHHHHcCCCCCeeeccC
Confidence            999999999999999999999

>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...

Probab=99.94  E-value=1.3e-27  Score=145.79  Aligned_cols=53  Identities=42%  Similarity=0.684  Sum_probs=50.9

Q ss_pred             hcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 034105           51 ARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        51 ~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~KssW  103 (103)
                      ...++++++++++|||.+|||+|||+|+|||||++|||+|+.|+||||+||||
T Consensus         9 k~~~~~~~~~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~~g~lpGv~KasW   61 (61)
T 2vqe_N            9 KAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW   61 (61)
T ss_dssp             GCCSCCSSGGGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred             HhccCCCCCCCCceeeecCCCCceeeccCceeHHHHHHHHhCCccCCeEeeeC
Confidence            35778999999999999999999999999999999999999999999999999

>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N

Probab=99.43  E-value=7.4e-14  Score=83.21  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=33.2

Q ss_pred             CccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034105           58 SFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ   92 (103)
Q Consensus        58 s~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~   92 (103)
                      .+++.+|||.+|||++|++|+||  |||++|||+|+.
T Consensus        12 ~~~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A~~   48 (55)
T 2xzm_N           12 NYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPH   48 (55)
T ss_dssp             TSSGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHHHH
T ss_pred             CCCCCceEeecCCCCcchHHHhCCchhhHHHHHHHHH
Confidence            46899999999999999999999  999999999985

>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.20  E-value=9.1e-12  Score=74.33  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CccccccccccCCCcchhhcccCc--cHHHHHHhhhc
Q 034105           58 SFTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ   92 (103)
Q Consensus        58 s~tri~nRC~~TGR~Rgv~r~f~l--SR~~fR~~a~~   92 (103)
                      ...+-.|+|.+|||++|++|+|||  ||++|||+|+.
T Consensus        13 ~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~   49 (56)
T 3j20_P           13 KFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPK   49 (56)
T ss_dssp             SSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHHHH
T ss_pred             ccCCCceEeecCCCCcccccccCChHHHHHHHHHHHh
Confidence            356788999999999999999999  99999999975

>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n

Probab=99.15  E-value=8.5e-12  Score=74.49  Aligned_cols=39  Identities=28%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             cCCCCCCccccccccccCCCcchhhcccCc--cHHHHHHhhhc
Q 034105           52 RLPRNSSFTRLRNRCIFTGRSRAVYEKFRM--SRIVFRSLANQ   92 (103)
Q Consensus        52 ~lpr~ss~tri~nRC~~TGR~Rgv~r~f~l--SR~~fR~~a~~   92 (103)
                      .-|++.  -+-.|+|.+|||++|++|+|||  ||++|||+|+.
T Consensus         9 sh~r~~--G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~   49 (56)
T 3iz6_N            9 SHPKNY--GAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKD   49 (56)
T ss_dssp             CCCCCC--CCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTCCS
T ss_pred             CCcccc--CCCcceeecCCCCcccccccCCcHHHHHHHHHHHh
Confidence            445543  3568999999999999999999  99999999975

>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N

Probab=99.12  E-value=2.2e-11  Score=72.63  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=33.0

Q ss_pred             CCCCCCccccccccccCCCcchhhcccC--ccHHHHHHhhhc
Q 034105           53 LPRNSSFTRLRNRCIFTGRSRAVYEKFR--MSRIVFRSLANQ   92 (103)
Q Consensus        53 lpr~ss~tri~nRC~~TGR~Rgv~r~f~--lSR~~fR~~a~~   92 (103)
                      -|++.  .+-.|+|.+|||++|++|+||  |||++|||+|+.
T Consensus        10 hpr~~--G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A~~   49 (56)
T 3u5c_d           10 HPRRY--GKGSRQCRVCSSHTGLIRKYGLNICRQCFREKAND   49 (56)
T ss_dssp             CCCSS--SGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHHHH
T ss_pred             CCccc--CCCcceeecCCCCcccccccCcchhHHHHHHHHHh
Confidence            45543  466899999999999999999  999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2qaln1	100	g.39.1.7 (N:1-100) Ribosomal protein S14 {Escheric	2e-26
d2uubn1	60	g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus t	3e-19

>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]} Length = 100

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Escherichia coli [TaxId: 562]

 Score = 91.8 bits (228), Expect = 2e-26
 Identities = 42/92 (45%), Positives = 53/92 (57%)

Query: 12  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
           + KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR
Sbjct: 9   EVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGR 68

Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
                 KF +SRI  R  A +G + G+KKASW
Sbjct: 69  PHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]} Length = 60

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

 Score = 72.4 bits (178), Expect = 3e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 43  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 2   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 59

Query: 103 W 103
           W
Sbjct: 60  W 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2qaln1	100	Ribosomal protein S14 {Escherichia coli [TaxId: 56	100.0
d2uubn1	60	Ribosomal protein S14 {Thermus thermophilus [TaxId	99.95

>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-47  Score=251.92  Aligned_cols=99  Identities=42%  Similarity=0.581  Sum_probs=92.1

Q ss_pred             hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCCccccccccccCCCcchhhcccCccH
Q 034105            5 SEKR-NIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSR   83 (103)
Q Consensus         5 ~~~~-~~rd~krR~l~~k~e~~R~~lK~i~~n~~l~~~~r~~~~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR   83 (103)
                      |+++ +.||.+|++++++||.+|..||+++.|.++|.++|++|+.+|++||+|||||+++|||++||||||||++|||||
T Consensus         1 AKkS~i~Rd~kR~~l~~ky~~kR~~Lk~i~~n~~l~~e~r~~a~~kL~~LPrnss~tRirnRC~~TGR~Rg~~r~f~lsR   80 (100)
T d2qaln1           1 AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSR   80 (100)
T ss_dssp             CCHHHHHHHHHHHHHHHHTGGGTGGGTTTTTSSCC----CCHHHHHHTTTTSTTCSTTCCCCCSSSCCSSSCBTTTTBCH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCccchhHHHHhhhccCCCcceeeccccchH
Confidence            4555 569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCCcccccC
Q 034105           84 IVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        84 ~~fR~~a~~G~lpGv~KssW  103 (103)
                      |+|||||+.|+||||+||||
T Consensus        81 i~fR~la~~G~lpGv~KaSW  100 (100)
T d2qaln1          81 IKVREAAMRGEIPGLKKASW  100 (100)
T ss_dssp             HHHHHHHHHTCSTTCEECCC
T ss_pred             HHHHHHHHcCCCCCeeccCC
Confidence            99999999999999999999

>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein S14
domain: Ribosomal protein S14
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4.1e-30  Score=154.59  Aligned_cols=55  Identities=45%  Similarity=0.779  Sum_probs=51.8

Q ss_pred             HHHHhcCCCCCCccccccccccCCCcchhhcccCccHHHHHHhhhcCCCCCcccccC
Q 034105           47 LCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW  103 (103)
Q Consensus        47 ~~~L~~lpr~ss~tri~nRC~~TGR~Rgv~r~f~lSR~~fR~~a~~G~lpGv~KssW  103 (103)
                      ..+++++|++  +||++|||++||||||||++|||||++|||+|+.|+||||+||||
T Consensus         6 ~~k~~~~pk~--~tR~~NRC~~tGR~Rg~~r~F~lsR~~fR~la~~G~ipGv~KaSW   60 (60)
T d2uubn1           6 IEKAKRTPKF--KVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW   60 (60)
T ss_dssp             GGGGCSCCSS--GGGCCCCCTTTCCCSSBCTTTSCBHHHHHHHHHHTCSTTCEECCC
T ss_pred             HHHHhcCCCC--CcccceeccCCCCCceeecccccHHHHHHHHHHcCCCCCeeecCC
Confidence            4467889985  699999999999999999999999999999999999999999999