Citrus Sinensis ID: 034116

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHccc
Coil and Loop (DISEMBL)
MATGGRLKNILATVVTTGLTEARAKIFGhvlnpagqrsphkILRKKLigdkvagwypydikkddplVMARQQQERLSKLEMLkrrgkgppkkgqgkraakrsk
Flexible Loop (DISEMBL)
matggrlkniLATVVTTGLTEARAKIFGhvlnpagqrsphKILRKKLigdkvagwypydikkddpLVMARQQQERLSklemlkrrgkgppkkgqgkraakrsk
Low Complexity Region (SEG)
MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLkrrgkgppkkgqgkraakrSK
Disordered region (IsUnstruct)
******LKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKD****************************************
Disordered Region (DISOPRED)
***************TTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLE***********************
Disordered Region (DISEMBL)
MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLK********************
Disordered Region (DISPRO)
*****RLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLKRR******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
P53305	110	Mitochondral 37S ribosoma	yes	no	0.708	0.663	0.428	4e-06

>sp|P53305|RT27_YEAST Mitochondral 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 11/84 (13%)

Query: 19 LTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWY--PYDIKK--------DDPLVM 68
          + E  AKIF    NP+G R+  KIL ++L G  VA +Y  P DI K         D   +
Sbjct: 11 VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNP-DILKFRHLKTLYPDIEFV 69

Query: 69 ARQQQERLSKLEMLKRRGKGPPKK 92
            ++Q RLS +E  KRRGKG PKK
Sbjct: 70 DLEEQYRLSMVEAKKRRGKGAPKK 93

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
255574452	105	conserved hypothetical protein [Ricinus	1.0	0.980	0.796	4e-40
449503345	141	PREDICTED: mitochondral 37S ribosomal pr	0.990	0.723	0.786	7e-40
449454784	102	PREDICTED: mitochondral 37S ribosomal pr	0.990	1.0	0.786	9e-40
225423583	102	PREDICTED: mitochondral 37S ribosomal pr	0.883	0.892	0.879	5e-39
449474433	94	PREDICTED: mitochondral 37S ribosomal pr	0.912	1.0	0.808	5e-38
297794891	102	hypothetical protein ARALYDRAFT_494514 [	0.990	1.0	0.747	5e-38
356520428	102	PREDICTED: mitochondral 37S ribosomal pr	0.990	1.0	0.737	7e-38
356504392	102	PREDICTED: mitochondral 37S ribosomal pr	0.941	0.950	0.783	9e-38
356504678	102	PREDICTED: mitochondral 37S ribosomal pr	0.990	1.0	0.737	2e-37
30694589	102	uncharacterized protein [Arabidopsis tha	0.990	1.0	0.737	2e-37

>gi|255574452|ref|XP_002528138.1| conserved hypothetical protein [Ricinus communis] gi|223532436|gb|EEF34229.1| conserved hypothetical protein [Ricinus communis]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 92/103 (89%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           M+ GG LK ILA  VTTG+ EARA+IFGH+LNP G +SPHKILRKKLIG+KVA WYP+DI
Sbjct: 1   MSGGGCLKGILAAAVTTGVAEARARIFGHILNPTGLKSPHKILRKKLIGEKVAQWYPHDI 60

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           K+DDPLVMARQ+QERLSKLEMLKRRGKGPPKKGQGK A KR+K
Sbjct: 61  KRDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKGAMKRNK 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503345|ref|XP_004161956.1| PREDICTED: mitochondral 37S ribosomal protein S27-like [Cucumis sativus]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MAT   LK+++A  V  G+TEARA+IFGH+LNP GQRS HK+LRKKLIGDKV+ WYPYDI
Sbjct: 40  MATNS-LKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDI 98

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           KKDDPLVMAR +QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 99  KKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454784|ref|XP_004145134.1| PREDICTED: mitochondral 37S ribosomal protein S27-like isoform 1 [Cucumis sativus] gi|449454786|ref|XP_004145135.1| PREDICTED: mitochondral 37S ribosomal protein S27-like isoform 2 [Cucumis sativus] gi|449454788|ref|XP_004145136.1| PREDICTED: mitochondral 37S ribosomal protein S27-like isoform 3 [Cucumis sativus]

 Score =  167 bits (422), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MAT   LK+++A  V  G+TEARA+IFGH+LNP GQRS HK+LRKKLIGDKV+ WYPYDI
Sbjct: 1   MATNS-LKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDI 59

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           KKDDPLVMAR +QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 60  KKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423583|ref|XP_002273533.1| PREDICTED: mitochondral 37S ribosomal protein S27 [Vitis vinifera] gi|297738035|emb|CBI27236.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 85/91 (93%)

Query: 13  TVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMARQQ 72
             V  G+TEARA+IFGHVLNP GQRSPHKILRKKLIG+KVA WYPYDIKKDDPLVMARQ+
Sbjct: 12  AAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIKKDDPLVMARQE 71

Query: 73  QERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           QERLSKLEMLKRRGKGPPKKGQGKRAAKR+K
Sbjct: 72  QERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474433|ref|XP_004154171.1| PREDICTED: mitochondral 37S ribosomal protein S27-like [Cucumis sativus]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 86/94 (91%)

Query: 10  ILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPLVMA 69
           ++A  V  G+TEARA+IFGH+LNP GQRS HK+LRKKLIGDKV+ WYPYDIKKDDPLVMA
Sbjct: 1   MIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMA 60

Query: 70  RQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           R +QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 61  RLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794891|ref|XP_002865330.1| hypothetical protein ARALYDRAFT_494514 [Arabidopsis lyrata subsp. lyrata] gi|297311165|gb|EFH41589.1| hypothetical protein ARALYDRAFT_494514 [Arabidopsis lyrata subsp. lyrata]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MA+G  LK+++++ V  G+TEARA+IFGH+LNP GQRSPHKILRKKLIGDKVA WYPYDI
Sbjct: 1   MASGS-LKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDI 59

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           K +DP V+AR++QER+SKLEMLKRR KGPPKKG GKRAAKR+K
Sbjct: 60  KNEDPNVLAREEQERISKLEMLKRRNKGPPKKGHGKRAAKRNK 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520428|ref|XP_003528864.1| PREDICTED: mitochondral 37S ribosomal protein S27-like [Glycine max]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 91/103 (88%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MA+G  LKN+L+  +  G+ E+RA+IFGH LNP GQ++PHK+LR KL G+KVA WYP+DI
Sbjct: 1   MASGS-LKNMLSEAINKGVVESRARIFGHQLNPTGQQTPHKLLRMKLFGEKVAQWYPHDI 59

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           KKDDPLVMARQ+QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 60  KKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504392|ref|XP_003520980.1| PREDICTED: mitochondral 37S ribosomal protein S27-like [Glycine max]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 86/97 (88%)

Query: 7   LKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIKKDDPL 66
           LKN+L+ V+  G  EARA IFGH LNPAG ++PHKILR KL G+KVA WYP+DIKKDDPL
Sbjct: 6   LKNVLSAVINQGAAEARAWIFGHQLNPAGNKTPHKILRMKLFGEKVAQWYPHDIKKDDPL 65

Query: 67  VMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           VMARQ+QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 66  VMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504678|ref|XP_003521122.1| PREDICTED: mitochondral 37S ribosomal protein S27-like isoform 1 [Glycine max]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MA+G  LKN+L+  +  G+ EARA+IFGH LNP G ++PHK+LR KL G+KVA WYP+DI
Sbjct: 1   MASGS-LKNMLSVAMNQGVVEARARIFGHQLNPTGMKTPHKLLRMKLFGEKVAQWYPHDI 59

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           KKDDPLVMARQ+QERLSKLEMLKRRGKGPPKKGQG+RAAKR+K
Sbjct: 60  KKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694589|ref|NP_199284.2| uncharacterized protein [Arabidopsis thaliana] gi|26451519|dbj|BAC42857.1| unknown protein [Arabidopsis thaliana] gi|28973445|gb|AAO64047.1| unknown protein [Arabidopsis thaliana] gi|332007766|gb|AED95149.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
           MA+G  LK+++++ V  G+TEARA+IFGH+LNP GQRSPHKILRKKLIGDKVA WYPYDI
Sbjct: 1   MASGS-LKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDI 59

Query: 61  KKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKRSK 103
           K +DP V+AR+++ER+SKLEMLKRR KGPPKKG GKRAAKR+K
Sbjct: 60  KNEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2156359	102	AT5G44710 "AT5G44710" [Arabido	0.786	0.794	0.707	1e-27
UNIPROTKB|G4NAS3	108	MGG_12764 "Uncharacterized pro	0.621	0.592	0.315	0.00013

TAIR|locus:2156359 AT5G44710 "AT5G44710" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 58/82 (70%), Positives = 73/82 (89%)

Query:     1 MATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI 60
             MA+G  LK+++++ V  G+TEARA+IFGH+LNP GQRSPHKILRKKLIGDKVA WYPYDI
Sbjct:     1 MASGS-LKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDI 59

Query:    61 KKDDPLVMARQQQERLSKLEML 82
             K +DP V+AR+++ER+SKLEML
Sbjct:    60 KNEDPNVLAREEKERISKLEML 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0016925 "protein sumoylation" evidence=RCA

UNIPROTKB|G4NAS3 MGG_12764 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/73 (31%), Positives = 43/73 (58%)

Query:    19 LTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPY------DIKKD---DPLVMA 69
             L +A+ ++F    NP G R+ +KILR++L G  +A +YP       D++K+   + ++  
Sbjct:    11 LMKAQCEVFSTAYNPEGVRTGNKILRQRLRGPALAAYYPRRVVTLRDLRKELGQEFMIED 70

Query:    70 RQQQERLSKLEML 82
               +++RL K+E L
Sbjct:    71 EAEEDRLLKIEEL 83


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103        84   0.00091  102 3  11 22  0.44    29
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  87 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.39u 0.12s 9.51t   Elapsed:  00:00:00
  Total cpu time:  9.39u 0.12s 9.51t   Elapsed:  00:00:00
  Start:  Fri May 10 15:07:47 2013   End:  Fri May 10 15:07:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam08293	87	pfam08293, MRP-S33, Mitochondrial ribosomal subuni	2e-22

>gnl|CDD|116877 pfam08293, MRP-S33, Mitochondrial ribosomal subunit S27

 Score = 82.7 bits (205), Expect = 2e-22
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 17 TGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYP------YDIKKDDPLVMAR 70
            +    A+IFG V NP G RS  KILR++L G ++A +YP       D+KK  P ++ R
Sbjct: 4  LRMARLSARIFGEVFNPTGSRSGKKILRQRLKGPELASYYPNHMPTFKDLKKLYPDLLFR 63

Query: 71 --QQQERLSKLEMLKRRGKGPPKK 92
             +  RL  L + K RGKG PKK
Sbjct: 64 DEHEDFRLEMLRLRKLRGKGAPKK 87

This family of proteins corresponds to mitochondrial ribosomal subunit S27 in prokaryotes and to subunit S33 in humans. It is a small 106 residue protein.The evolutionary history of the mitoribosomal proteome that is encoded by a diverse subset of eukaryotic genomes, reveals an ancestral ribosome of alpha-proteobacterial descent that more than doubled its protein content in most eukaryotic lineages. Several new MRPs have originated via duplication of existing MRPs as well as by recruitment from outside of the mitoribosomal proteome. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF08293	87	MRP-S33: Mitochondrial ribosomal subunit S27; Inte	100.0
KOG4844	102	consensus Mitochondrial ribosomal protein S27 [Tra	99.97
KOG4104	113	consensus Ganglioside-induced differentiation asso	99.96

>PF08293 MRP-S33: Mitochondrial ribosomal subunit S27; InterPro: IPR013219 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.2e-36  Score=201.74  Aligned_cols=78  Identities=47%  Similarity=0.728  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCchhHHhhhccccccccccCCCCCC--------ccCCCCCChHHHHHHHHHHHHHhcC
Q 034116           15 VTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIK--------KDDPLVMARQQQERLSKLEMLKRRG   86 (103)
Q Consensus        15 r~~~l~~ls~rIFg~~~nPt~~Rsg~kvlr~~lkG~~v~~YYP~~~~--------r~~g~~~De~e~~R~~~~~~rk~RG   86 (103)
                      |+++|++|||+||||++|||++|||+||||++|+|++|++|||+++.        +.+++|+||||++|+++++++++||
T Consensus         2 r~~~l~~ls~rIFg~~~nP~~~Rsg~Kilr~~lkg~~~~~YYP~~~~~~~~l~~l~~~~~~~De~e~~R~e~~~~rk~RG   81 (87)
T PF08293_consen    2 RLLRLARLSARIFGTVYNPTGSRSGNKILRKRLKGPKLASYYPPHIVTFKLLKRLRPDGLFRDEHEDFREEMVELRKRRG   81 (87)
T ss_pred             HHHHHHHHHHHHhCCCCCCccchHHHHHHhhcCCCchHhHhCCCcchHHHHHHHHccccCcCChhHHHHHHHHHHHHhCC
Confidence            78999999999999999999999999999999999999999999763        3455699999999999999999999


Q ss_pred             CCCCCC
Q 034116           87 KGPPKK   92 (103)
Q Consensus        87 Kg~PKK   92 (103)
                      ||+|||
T Consensus        82 Kg~PKK   87 (87)
T PF08293_consen   82 KGPPKK   87 (87)
T ss_pred             CCCCCC
Confidence            999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a mitochondrial ribosomal subunit annotated as S27 in yeast and S33 in humans [, ]. It is a small 106 residue protein. The evolutionary history of the mitoribosomal proteome that is encoded by a diverse subset of eukaryotic genomes, reveals an ancestral ribosome of alpha-proteobacterial descent that more than doubled its protein content in most eukaryotic lineages. Several new MRPs have originated via duplication of existing MRPs as well as by recruitment from outside of the mitoribosomal proteome [].

>KOG4844 consensus Mitochondrial ribosomal protein S27 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.9e-31  Score=180.60  Aligned_cols=91  Identities=63%  Similarity=0.887  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCchhHHhhhccccccccccCCCCC-CccCC------CCCChHHHHHHHHHHHHHhc
Q 034116           13 TVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDI-KKDDP------LVMARQQQERLSKLEMLKRR   85 (103)
Q Consensus        13 ~~r~~~l~~ls~rIFg~~~nPt~~Rsg~kvlr~~lkG~~v~~YYP~~~-~r~~g------~~~De~e~~R~~~~~~rk~R   85 (103)
                      +|++..++.||++||||.|||||+|||+|||+++|+|+.|++|||+.+ ++.++      .|.|-+|+.|+++++.+++|
T Consensus         5 kAvl~~v~elsakIFg~~~np~g~Rtg~Kil~~~LkG~kvasyYp~~~~~r~l~tll~d~ef~d~~e~~R~s~~e~~kRr   84 (102)
T KOG4844|consen    5 KAVLRGVTELSAKIFGHMLNPTGQRTGHKILRKKLKGDKVASYYPPYDIKRELPTLLADEEFDDIAEWGRISKLEMLKRR   84 (102)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCcchhHHHHHHhccchHhhhcchHHhhhhhhhhhcccccccHHHHHHHHHHHHHHHc
Confidence            899999999999999999999999999999999999999999999954 46555      28899999999999999999


Q ss_pred             CCCCCCCCCChhHhhhcC
Q 034116           86 GKGPPKKGQGKRAAKRSK  103 (103)
Q Consensus        86 GKg~PKKg~gkra~kkk~  103 (103)
                      |||+|||++++++++.++
T Consensus        85 gKGapKk~kk~~aa~~~~  102 (102)
T KOG4844|consen   85 GKGAPKKGKKKRAAKRNK  102 (102)
T ss_pred             cCCCCcccchhhhhhccC
Confidence            999999999999988764

>KOG4104 consensus Ganglioside-induced differentiation associated protein 3 [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-29  Score=175.49  Aligned_cols=98  Identities=28%  Similarity=0.443  Sum_probs=88.1

Q ss_pred             chhhhhhhhHHHHHHHHHHHHhhhcccCCCCCCCchhHH--hhhcc--ccccccccCCCCCC--------ccCCCCCChH
Q 034116            4 GGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKI--LRKKL--IGDKVAGWYPYDIK--------KDDPLVMARQ   71 (103)
Q Consensus         4 ~~~~~~~~s~~r~~~l~~ls~rIFg~~~nPt~~Rsg~kv--lr~~l--kG~~v~~YYP~~~~--------r~~g~~~De~   71 (103)
                      +|.+-+.||. +..+|++||++|||+|.+|||.+|+++|  ||+.|  +-+++.+|||++..        |++|+|+|||
T Consensus         4 ~~~~is~~t~-ya~RM~rLSnRvfGEV~rpTn~KSmKVVr~fSeeP~~kk~~~~~wYPnh~~~h~Lmk~LRf~GLfrDeH   82 (113)
T KOG4104|consen    4 AGRGISQPTP-YAKRMDRLSNRVFGEVVRPTNTKSMKVVRVFSEEPYEKKEQLSKWYPNHPMFHYLMKMLRFHGLFRDEH   82 (113)
T ss_pred             cccccCCccH-HHHHHHHHHHHHHhhccccCCCcceehhhhccccchhhHHHHHHhccCchHHHHHHHHHHHhhhhhhhH
Confidence            4445556665 8899999999999999999999999976  99999  56889999999653        8999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCChhHhhhc
Q 034116           72 QQERLSKLEMLKRRGKGPPKKGQGKRAAKRS  102 (103)
Q Consensus        72 e~~R~~~~~~rk~RGKg~PKKg~gkra~kkk  102 (103)
                      ++|++++.+++++|||.+||||+||||++++
T Consensus        83 qdF~deqkrLkklRGK~~PkkGeGKRA~kr~  113 (113)
T KOG4104|consen   83 QDFRDEQKRLKKLRGKVVPKKGEGKRAQKRG  113 (113)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCcchhhhhcC
Confidence            9999999999999999999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00