Citrus Sinensis ID: 034128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEccHcccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
MTSRGANAVIARAMRMETKLRSALEATVLEIddvshkhaghaavkdsnsgethfdlkivspkfegknlvnrHRMVYQVLSDELNSGLHALSIVAKtpqeaalk
Flexible Loop (DISEMBL)
mtsrganaviARAMRMETKLRSALEATVLEIDDVSHKHAGHaavkdsnsgethFDLKIVspkfegknlvNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK
Low Complexity Region (SEG)
MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK
Disordered region (IsUnstruct)
***********************LEATVLEID********************HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIV**********
Disordered Region (DISOPRED)
****************ETKLRSALEATVLEIDDVSHKHA*************HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTP******
Disordered Region (DISEMBL)
MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK
Disordered Region (DISPRO)
**********ARAMRMETKLRSALEATVLEIDDVSH*************GETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q84W65	371	SufE-like protein, chloro	yes	no	0.932	0.258	0.58	2e-26
Q3E793	110	Uncharacterized bolA-like	yes	no	0.631	0.590	0.567	1e-14
Q12238	102	UV-induced protein uvi31	yes	no	0.902	0.911	0.431	5e-14
Q9Y3E2	137	BolA-like protein 1 OS=Ho	yes	no	0.883	0.664	0.402	2e-11
P0ABE4	105	Protein BolA OS=Shigella	yes	no	0.766	0.752	0.388	2e-11
P0ABE2	105	Protein BolA OS=Escherich	N/A	no	0.766	0.752	0.388	2e-11
P0ABE3	105	Protein BolA OS=Escherich	yes	no	0.766	0.752	0.388	2e-11
Q9D8S9	137	BolA-like protein 1 OS=Mu	yes	no	0.757	0.569	0.440	2e-11
Q5RCE5	137	BolA-like protein 1 OS=Po	yes	no	0.883	0.664	0.402	3e-11
Q3T138	135	BolA-like protein 1 OS=Bo	yes	no	0.757	0.577	0.440	5e-11

>sp|Q84W65|SUFE_ARATH SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 5   GANAVI--ARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDS--NSGETHFDLKIVS 60
           G+N V   +R MR+  KL   L+   LE++DVS++HAGHAAV+ S  + GETHF+L+IVS
Sbjct: 272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEA 100
             F+GK+LV RHR++Y +L DEL SGLHALSIVAKTP E 
Sbjct: 332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E793|YA044_YEAST Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAL044W-A PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 35  SHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDEL--NSGLHALSI 92
           SHKH GHA V+ + S ETHF +++VS KFEG  L  RHRMVY +L DE+   +G+HAL +
Sbjct: 38  SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQL 97

Query: 93  VAKTPQE 99
             KTPQE
Sbjct: 98  SLKTPQE 104

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12238|UVI31_SCHPO UV-induced protein uvi31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uvi31 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 9   VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKD-SNSGETHFDLKIVSPKFEGKN 67
            + R  R+   L  AL+   + + + S+KH+ H A+K   ++ ETHF L+IVSP+F G +
Sbjct: 8   TMGRQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMS 67

Query: 68  LVNRHRMVYQVLSDELNSGLHALSIV-AKTPQEAA 101
            V RHR+VY +L DE + GLHAL I  +KTP E +
Sbjct: 68  RVARHRLVYGLLKDEFDGGLHALQITSSKTPDEVS 102

May be involved in control of cell division, especially during the resumption from cell cycle arrest.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9Y3E2|BOLA1_HUMAN BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 6/97 (6%)

Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           S G+ A+      + TKL  AL   VLE+ + S    GHA    S   ETHF + +VS +
Sbjct: 23  SAGSGAIGPVEAAIRTKLEEALSPEVLELRNES---GGHAVPPGS---ETHFRVAVVSSR 76

Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           FEG + + RHR+V+  L++EL   +HAL+I A+TP +
Sbjct: 77  FEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQ 113

Homo sapiens (taxid: 9606)

>sp|P0ABE4|BOLA_SHIFL Protein BolA OS=Shigella flexneri GN=bolA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
          R+E KLR+A +   LE+ D S++H   A        E+HF + +VS +F G+  +NRHRM
Sbjct: 6  RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRM 59

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          +Y  L++EL++ +HAL++   T +E
Sbjct: 60 IYSTLAEELSTTVHALALHTYTIKE 84

Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.

Shigella flexneri (taxid: 623)

>sp|P0ABE2|BOLA_ECOLI Protein BolA OS=Escherichia coli (strain K12) GN=bolA PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
          R+E KLR+A +   LE+ D S++H   A        E+HF + +VS +F G+  +NRHRM
Sbjct: 6  RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRM 59

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          +Y  L++EL++ +HAL++   T +E
Sbjct: 60 IYSTLAEELSTTVHALALHTYTIKE 84

Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0ABE3|BOLA_ECOL6 Protein BolA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=bolA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
          R+E KLR+A +   LE+ D S++H   A        E+HF + +VS +F G+  +NRHRM
Sbjct: 6  RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRM 59

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          +Y  L++EL++ +HAL++   T +E
Sbjct: 60 IYSTLAEELSTTVHALALHTYTIKE 84

Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|Q9D8S9|BOLA1_MOUSE BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 6/84 (7%)

Query: 16  METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
           +  KL  AL   VLE+ + S    GHA    S   ETHF + +VS +FEG + + RHR+V
Sbjct: 36  IRAKLEQALSPEVLELRNES---GGHAVPAGS---ETHFRVAVVSSRFEGMSPLQRHRLV 89

Query: 76  YQVLSDELNSGLHALSIVAKTPQE 99
           ++ LS+EL   +HAL+I AKTP +
Sbjct: 90  HEALSEELAGPVHALAIQAKTPAQ 113

Mus musculus (taxid: 10090)

>sp|Q5RCE5|BOLA1_PONAB BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 6/97 (6%)

Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           S G+ AV      + TKL  AL   VLE+ + S    GHA    S   ETHF + +VS +
Sbjct: 23  SAGSGAVGPVEAAIRTKLEQALSPEVLELRNES---GGHAVPPGS---ETHFRVAVVSSR 76

Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           FEG + + RHR+++  L++EL   +HAL+I A+TP +
Sbjct: 77  FEGLSPLQRHRLIHAALAEELAGPVHALAIQARTPAQ 113

Pongo abelii (taxid: 9601)

>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 6/84 (7%)

Query: 16  METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
           + TKL  AL   VLE+ + S    GHA    S   ETHF + +VS +FEG + + RHR+V
Sbjct: 36  IRTKLEQALNPEVLELRNES---GGHAVPPGS---ETHFRVAVVSSRFEGLSPLQRHRLV 89

Query: 76  YQVLSDELNSGLHALSIVAKTPQE 99
           +  LS+EL   +HAL+I A+TP +
Sbjct: 90  HAALSEELAGPVHALAIQARTPAQ 113

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
449439499	102	PREDICTED: sufE-like protein, chloroplas	0.990	1.0	0.718	9e-36
449503093	102	PREDICTED: sufE-like protein, chloroplas	0.990	1.0	0.708	4e-35
356560033	104	PREDICTED: sufE-like protein, chloroplas	0.961	0.951	0.707	4e-35
195608638	101	UV-induced protein uvi31 [Zea mays]	0.951	0.970	0.707	3e-34
226497740	102	UV-induced protein uvi31 [Zea mays] gi|1	0.951	0.960	0.707	3e-34
297600547	132	Os03g0219500 [Oryza sativa Japonica Grou	0.970	0.757	0.663	4e-34
108706882	102	BolA-like protein, expressed [Oryza sati	0.970	0.980	0.663	4e-34
224120486	100	predicted protein [Populus trichocarpa]	0.961	0.99	0.7	1e-33
357499925	105	SufE-like protein [Medicago truncatula]	0.961	0.942	0.676	1e-33
357136703	102	PREDICTED: sufE-like protein, chloroplas	0.970	0.980	0.663	1e-33

>gi|449439499|ref|XP_004137523.1| PREDICTED: sufE-like protein, chloroplastic-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
           M SRGAN V++RA RM+TKL+SAL A++LEI+DVSH+HAGHAAVK S +GETHF++KIVS
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGS-AGETHFNVKIVS 59

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK 103
           PKFEG++LV RHRMVY  L++EL SGLHA+SIVAKTPQE   K
Sbjct: 60  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503093|ref|XP_004161830.1| PREDICTED: sufE-like protein, chloroplastic-like [Cucumis sativus]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 89/103 (86%), Gaps = 1/103 (0%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
           M SRGAN V++RA RM+T L+SAL A++LEI+DVSH+HAGHAAVK S +GETHF++KIVS
Sbjct: 1   MASRGANVVLSRANRMKTNLQSALSASLLEIEDVSHQHAGHAAVKGS-AGETHFNVKIVS 59

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK 103
           PKFEG++LV RHRMVY  L++EL SGLHA+SIVAKTPQE   K
Sbjct: 60  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560033|ref|XP_003548300.1| PREDICTED: sufE-like protein, chloroplastic-like [Glycine max] gi|27764549|gb|AAO23079.1| unknown [Glycine max]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 88/99 (88%)

Query: 1  MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
          M+SRGA AV++RA R+ +KL++ALEATVLE+DDVS++HAGHAAVK S+  ETHF+L IVS
Sbjct: 1  MSSRGATAVLSRASRIRSKLQTALEATVLEVDDVSYQHAGHAAVKGSSDKETHFNLNIVS 60

Query: 61 PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
          PKFEG++LV RHR++Y +L+DEL SGLHALSIVAKTP E
Sbjct: 61 PKFEGQSLVKRHRLIYDLLADELQSGLHALSIVAKTPHE 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195608638|gb|ACG26149.1| UV-induced protein uvi31 [Zea mays]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 88/99 (88%), Gaps = 1/99 (1%)

Query: 1  MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
          M SRG +AV++RA RM  KL+SALEA+ L+I+DVS++HAGHAAVKD N+ ETHF++K+VS
Sbjct: 1  MASRGTSAVLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAVKD-NANETHFNIKVVS 59

Query: 61 PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
          PKFEG+NLV RHRMVY +L DEL+SGLHA+SIVAKTP+E
Sbjct: 60 PKFEGQNLVKRHRMVYDLLRDELSSGLHAVSIVAKTPKE 98

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497740|ref|NP_001151829.1| UV-induced protein uvi31 [Zea mays] gi|195649243|gb|ACG44089.1| UV-induced protein uvi31 [Zea mays] gi|195650031|gb|ACG44483.1| UV-induced protein uvi31 [Zea mays] gi|195657715|gb|ACG48325.1| UV-induced protein uvi31 [Zea mays] gi|223944215|gb|ACN26191.1| unknown [Zea mays] gi|413937928|gb|AFW72479.1| UV-induced protein uvi31 isoform 1 [Zea mays] gi|413937929|gb|AFW72480.1| UV-induced protein uvi31 isoform 2 [Zea mays] gi|413937930|gb|AFW72481.1| UV-induced protein uvi31 isoform 3 [Zea mays]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 88/99 (88%), Gaps = 1/99 (1%)

Query: 1  MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
          M SRG +AV++RA RM  KL+SALEA+ L+I+DVS++HAGHAAVKD N+ ETHF++K+VS
Sbjct: 2  MASRGTSAVLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAVKD-NANETHFNIKVVS 60

Query: 61 PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
          PKFEG+NLV RHRMVY +L DEL+SGLHA+SIVAKTP+E
Sbjct: 61 PKFEGQNLVKRHRMVYDLLRDELSSGLHAVSIVAKTPKE 99

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297600547|ref|NP_001049402.2| Os03g0219500 [Oryza sativa Japonica Group] gi|255674316|dbj|BAF11316.2| Os03g0219500, partial [Oryza sativa Japonica Group]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 91/101 (90%), Gaps = 1/101 (0%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
           M+SRG +A+++RA RM  KL+SALEA+ L+I+DVS++HAGHAAVKD N+ ETHF+++++S
Sbjct: 32  MSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAVKD-NANETHFNIRVIS 90

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAA 101
           PKFEG++LV RHRMVY +L+DELNSGLHA+SIVAKTP+E+ 
Sbjct: 91  PKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG 131

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108706882|gb|ABF94677.1| BolA-like protein, expressed [Oryza sativa Japonica Group] gi|108706883|gb|ABF94678.1| BolA-like protein, expressed [Oryza sativa Japonica Group] gi|108706884|gb|ABF94679.1| BolA-like protein, expressed [Oryza sativa Japonica Group] gi|149391321|gb|ABR25678.1| uv-induced protein uvi31 [Oryza sativa Indica Group] gi|215765366|dbj|BAG87063.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192349|gb|EEC74776.1| hypothetical protein OsI_10551 [Oryza sativa Indica Group] gi|222624475|gb|EEE58607.1| hypothetical protein OsJ_09945 [Oryza sativa Japonica Group]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 91/101 (90%), Gaps = 1/101 (0%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
           M+SRG +A+++RA RM  KL+SALEA+ L+I+DVS++HAGHAAVKD N+ ETHF+++++S
Sbjct: 2   MSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAVKD-NANETHFNIRVIS 60

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAA 101
           PKFEG++LV RHRMVY +L+DELNSGLHA+SIVAKTP+E+ 
Sbjct: 61  PKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG 101

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120486|ref|XP_002318341.1| predicted protein [Populus trichocarpa] gi|222859014|gb|EEE96561.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 88/100 (88%), Gaps = 1/100 (1%)

Query: 1   MTSRG-ANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIV 59
           M SRG AN +++RA RM+ KL+S+LEA++LEI+DVSH+HAGHAA+K + +GETHF++KIV
Sbjct: 1   MGSRGVANMILSRASRMKAKLQSSLEASLLEIEDVSHQHAGHAAMKGNTAGETHFNVKIV 60

Query: 60  SPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           SPKF+G NLV RHR+VY  LS+EL SGLHALSIVAKTPQE
Sbjct: 61  SPKFDGLNLVKRHRLVYDALSEELQSGLHALSIVAKTPQE 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499925|ref|XP_003620251.1| SufE-like protein [Medicago truncatula] gi|355495266|gb|AES76469.1| SufE-like protein [Medicago truncatula]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 86/99 (86%)

Query: 1  MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
          M+ RG   +++RA R++TKL+S+L ATV+E+DDVS++HAGHAA+K+S+  ETHF+LKIVS
Sbjct: 1  MSFRGTTTLLSRATRIQTKLQSSLSATVIELDDVSYQHAGHAAMKESSEQETHFNLKIVS 60

Query: 61 PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           KFEG NLV RHRMVY+VL DEL SGLHALSI+AKTP+E
Sbjct: 61 EKFEGVNLVKRHRMVYEVLDDELKSGLHALSIIAKTPKE 99

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136703|ref|XP_003569943.1| PREDICTED: sufE-like protein, chloroplastic-like isoform 1 [Brachypodium distachyon] gi|357136705|ref|XP_003569944.1| PREDICTED: sufE-like protein, chloroplastic-like isoform 2 [Brachypodium distachyon]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 88/101 (87%), Gaps = 1/101 (0%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
           M SRG   V++RA RM  KL+S+LEA+ L+I+DVS++HAGHAAVKD N+ ETHF++K++S
Sbjct: 2   MGSRGTGTVLSRAARMRQKLQSSLEASALDIEDVSYQHAGHAAVKD-NANETHFNIKVIS 60

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAA 101
           PKFEG++LV RHRMVY +L+DELNSGLHA+SIVAKTP+E+ 
Sbjct: 61  PKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG 101

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2131488	371	CPSUFE "chloroplast sulfur E"	0.922	0.256	0.585	2.2e-25
TAIR|locus:505006189	160	AT1G55805 "AT1G55805" [Arabido	0.990	0.637	0.549	2.6e-24
CGD|CAL0001596	121	orf19.5016 [Candida albicans (	0.796	0.677	0.476	7.7e-16
UNIPROTKB|Q5AKW1	121	CaO19.12483 "Putative uncharac	0.796	0.677	0.476	7.7e-16
SGD|S000007586	110	YAL044W-A "Putative protein of	0.631	0.590	0.567	2.6e-15
POMBASE|SPBC16E9.06c	102	uvi31 "BolA domain UV induced	0.893	0.901	0.436	1.1e-14
UNIPROTKB|Q0C625	93	HNE_0084 "BolA family protein"	0.825	0.913	0.425	1.5e-12
MGI|MGI:1916418	137	Bola1 "bolA-like 1 (E. coli)"	0.902	0.678	0.408	3.1e-12
ZFIN|ZDB-GENE-040801-76	122	bola1 "bolA homolog 1 (E. coli	0.757	0.639	0.452	3.9e-12
UNIPROTKB|Q9Y3E2	137	BOLA1 "BolA-like protein 1" [H	0.883	0.664	0.402	6.4e-12

TAIR|locus:2131488 CPSUFE "chloroplast sulfur E" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/99 (58%), Positives = 75/99 (75%)

Query:     5 GANAVI--ARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDS--NSGETHFDLKIVS 60
             G+N V   +R MR+  KL   L+   LE++DVS++HAGHAAV+ S  + GETHF+L+IVS
Sbjct:   272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query:    61 PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
               F+GK+LV RHR++Y +L DEL SGLHALSIVAKTP E
Sbjct:   332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IGI;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IGI;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:505006189 AT1G55805 "AT1G55805" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 56/102 (54%), Positives = 72/102 (70%)

Query:     2 TSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSP 61
             T   + A+  RA RM  KL+  LE   L I+DVS++HAGHA +K     ETHF++KIVS 
Sbjct:    58 TGSDSGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSK 117

Query:    62 KFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK 103
              FEG NLV RHR+VY +L +EL++GLHALSIV+KTP E+  K
Sbjct:   118 GFEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

CGD|CAL0001596 orf19.5016 [Candida albicans (taxid:5476)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 40/84 (47%), Positives = 59/84 (70%)

Query:    18 TKLRSALEATVLEIDDVSHKHAGHAAVKDS-NSGETHFDLKIVSPKFEGKNLVNRHRMVY 76
             +K+ +  +    +ID+ SHKHA HA ++ + N  E+HF L+IVS  FEGK+L  RHR+VY
Sbjct:    32 SKITNEFKPLYFKIDNDSHKHAHHAGIRGAKNKTESHFRLEIVSDVFEGKSLSARHRLVY 91

Query:    77 QVLSDEL-NSGLHALSIVAKTPQE 99
              +L++EL N G+HAL +  KTP+E
Sbjct:    92 SLLANELKNDGVHALQMKTKTPEE 115

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

UNIPROTKB|Q5AKW1 CaO19.12483 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 40/84 (47%), Positives = 59/84 (70%)

Query:    18 TKLRSALEATVLEIDDVSHKHAGHAAVKDS-NSGETHFDLKIVSPKFEGKNLVNRHRMVY 76
             +K+ +  +    +ID+ SHKHA HA ++ + N  E+HF L+IVS  FEGK+L  RHR+VY
Sbjct:    32 SKITNEFKPLYFKIDNDSHKHAHHAGIRGAKNKTESHFRLEIVSDVFEGKSLSARHRLVY 91

Query:    77 QVLSDEL-NSGLHALSIVAKTPQE 99
              +L++EL N G+HAL +  KTP+E
Sbjct:    92 SLLANELKNDGVHALQMKTKTPEE 115

GO:0003674 "molecular_function" evidence=ND

SGD|S000007586 YAL044W-A "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/67 (56%), Positives = 48/67 (71%)

Query:    35 SHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN--SGLHALSI 92
             SHKH GHA V+ + S ETHF +++VS KFEG  L  RHRMVY +L DE+   +G+HAL +
Sbjct:    38 SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQL 97

Query:    93 VAKTPQE 99
               KTPQE
Sbjct:    98 SLKTPQE 104

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC16E9.06c uvi31 "BolA domain UV induced protein Uvi31" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/94 (43%), Positives = 60/94 (63%)

Query:    10 IARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKD-SNSGETHFDLKIVSPKFEGKNL 68
             + R  R+   L  AL+   + + + S+KH+ H A+K   ++ ETHF L+IVSP+F G + 
Sbjct:     9 MGRQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSR 68

Query:    69 VNRHRMVYQVLSDELNSGLHALSIVA-KTPQEAA 101
             V RHR+VY +L DE + GLHAL I + KTP E +
Sbjct:    69 VARHRLVYGLLKDEFDGGLHALQITSSKTPDEVS 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IMP

UNIPROTKB|Q0C625 HNE_0084 "BolA family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/87 (42%), Positives = 51/87 (58%)

Query:    12 RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNR 71
             R  R+E  L +A E   L + D SHKH GHA    +  GETH+ ++IV+  F G + V  
Sbjct:     7 RQTRIEDILTAAFEPVSLTVIDDSHKHEGHAGA--APGGETHYSVEIVAEAFTGLSRVQV 64

Query:    72 HRMVYQVLSDELNSGLHALSIVAKTPQ 98
              R V  VL  E +SGLHAL++ A+ P+
Sbjct:    65 QRAVMMVLQQEFDSGLHALTLKARPPE 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916418 Bola1 "bolA-like 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/98 (40%), Positives = 62/98 (63%)

Query:     3 SRGANAVIARAMRMETKLRSALEATVL-EIDDVSHKHAGHAAVKDSNSGETHFDLKIVSP 61
             SRG+ A  A A  +E  +R+ LE  +  E+ ++ ++  GHA    S   ETHF + +VS 
Sbjct:    20 SRGS-AGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGS---ETHFRVAVVSS 75

Query:    62 KFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
             +FEG + + RHR+V++ LS+EL   +HAL+I AKTP +
Sbjct:    76 RFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 113

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-76 bola1 "bolA homolog 1 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/84 (45%), Positives = 55/84 (65%)

Query:    16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
             + TKL  AL    LE+ + SH HA    V   +  E+HF + +VS +FEG +L+ RHR+V
Sbjct:    13 IRTKLSQALNPEHLEVINESHMHA----VPPGS--ESHFKVLVVSLQFEGLSLLQRHRLV 66

Query:    76 YQVLSDELNSGLHALSIVAKTPQE 99
              + L +EL++ +HALSI AKTPQ+
Sbjct:    67 NETLKEELSTCIHALSIQAKTPQQ 90

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9Y3E2 BOLA1 "BolA-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:     3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
             S G+ A+      + TKL  AL   VLE+ + S    GHA    S   ETHF + +VS +
Sbjct:    23 SAGSGAIGPVEAAIRTKLEEALSPEVLELRNES---GGHAVPPGS---ETHFRVAVVSSR 76

Query:    63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
             FEG + + RHR+V+  L++EL   +HAL+I A+TP +
Sbjct:    77 FEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12238	UVI31_SCHPO	No assigned EC number	0.4315	0.9029	0.9117	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	2e-29
pfam01722	72	pfam01722, BolA, BolA-like protein	2e-27
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	1e-17
COG5007	80	COG5007, COG5007, Predicted transcriptional regula	1e-08

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score =  100 bits (252), Expect = 2e-29
 Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 5/90 (5%)

Query: 12  RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNR 71
           +  R+E KLR+A   + LEI D SH+H GHA       G +HF + IVS  F+GK+LV R
Sbjct: 4   QRERIEKKLRAAFPPSFLEIIDESHRHHGHA-----GGGGSHFKVVIVSEAFQGKSLVAR 58

Query: 72  HRMVYQVLSDELNSGLHALSIVAKTPQEAA 101
           HR+VY  L DEL+ G+HAL++   TP+E  
Sbjct: 59  HRLVYSALKDELSGGIHALALHTYTPEEWK 88

Length = 90

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 94.9 bits (237), Expect = 2e-27
 Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 11/81 (13%)

Query: 19 KLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQV 78
           L +AL    LE++D SHK              +HF + +VS  FEGK+LV RHR+VY  
Sbjct: 2  LLEAALPPAHLEVEDESHKG-----------DGSHFKVVVVSDAFEGKSLVKRHRLVYAA 50

Query: 79 LSDELNSGLHALSIVAKTPQE 99
          L +EL SG+HALSI   TP+E
Sbjct: 51 LKEELASGIHALSIKTYTPEE 71

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 71.4 bits (175), Expect = 1e-17
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
          +E KLR+A +   LE+ D S++H   A        E+HF + +VS +F G+  +NRHRM+
Sbjct: 7  IEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRMI 60

Query: 76 YQVLSDELNSGLHALSIVAKTPQE 99
          Y  L++EL++ +HAL++   T +E
Sbjct: 61 YSTLAEELSTTVHALALHTYTIKE 84

Length = 105

>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 53  HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSG-LHALSIVAKTPQEAA 101
           HF +  VS +F GK+ V R ++VY  L   +    +HALSI   TP E A
Sbjct: 27  HFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAEWA 76

Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PRK11628	105	transcriptional regulator BolA; Provisional	100.0
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	100.0
KOG2313	100	consensus Stress-induced protein UVI31+ [Signal tr	100.0
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	100.0
KOG3348	85	consensus BolA (bacterial stress-induced morphogen	99.97
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.95

>PRK11628 transcriptional regulator BolA; Provisional

Probab=100.00  E-value=1.8e-35  Score=200.63  Aligned_cols=87  Identities=37%  Similarity=0.575  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcce
Q 034128           10 IARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHA   89 (103)
Q Consensus        10 ~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHA   89 (103)
                      |+.+++|+++|+++|+|..|+|.|+|++|+||.    | |+ +||+|+|||+.|+|||+|+||||||++|+++|+++|||
T Consensus         1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~----g-~~-~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHA   74 (105)
T PRK11628          1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPA----G-SE-SHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHA   74 (105)
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEECcccccCCC----C-CC-ceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccc
Confidence            567899999999999999999999999998854    2 24 89999999999999999999999999999999978999


Q ss_pred             EEEEecChhHHhh
Q 034128           90 LSIVAKTPQEAAL  102 (103)
Q Consensus        90 lsi~t~tp~Ew~~  102 (103)
                      |+|+||||+||+.
T Consensus        75 Lsi~t~tp~Ew~~   87 (105)
T PRK11628         75 LALHTYTIKEWEG   87 (105)
T ss_pred             eeeecCCHHHHHH
Confidence            9999999999975

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=100.00  E-value=9.6e-35  Score=186.94  Aligned_cols=76  Identities=57%  Similarity=0.911  Sum_probs=68.4

Q ss_pred             HHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceEEEEecChh
Q 034128           19 KLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQ   98 (103)
Q Consensus        19 ~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAlsi~t~tp~   98 (103)
                      ||+++|+|+.|+|.|+|++|+||.    +  |++||+|+|||+.|+|||+|+||||||++|+++|+++||||+|+|+||+
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~----~--g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~t~tp~   74 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHA----G--GGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIKTYTPE   74 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-C----C--SSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEEEE-HH
T ss_pred             ChhHhCCCcEEEEEECcccccCCC----C--CCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCCcc
Confidence            688999999999999999999999    3  2499999999999999999999999999999999978999999999999


Q ss_pred             HH
Q 034128           99 EA  100 (103)
Q Consensus        99 Ew  100 (103)
                      ||
T Consensus        75 Ew   76 (76)
T PF01722_consen   75 EW   76 (76)
T ss_dssp             HH
T ss_pred             cC
Confidence            99

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=193.07  Aligned_cols=98  Identities=48%  Similarity=0.706  Sum_probs=93.4

Q ss_pred             CCCCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q 034128            3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDE   82 (103)
Q Consensus         3 ~~~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~   82 (103)
                      +++++.++++..+|+++|..+|.|..+++.|+|++|+||+..+|...+|+||+|.|||++|+|+|+++||||||++|+||
T Consensus         2 ~~~~~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eE   81 (100)
T KOG2313|consen    2 SAPSGIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEE   81 (100)
T ss_pred             CCcccccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999998555789999999999999999999999999999999


Q ss_pred             hcC-CcceEEEEecChhHH
Q 034128           83 LNS-GLHALSIVAKTPQEA  100 (103)
Q Consensus        83 i~~-~iHAlsi~t~tp~Ew  100 (103)
                      +.+ ++|||+|.++||+||
T Consensus        82 l~~~gvHAL~i~aKTP~e~  100 (100)
T KOG2313|consen   82 LAGTGVHALSIMAKTPSEV  100 (100)
T ss_pred             hhccceeEEEeeccCCCCC
Confidence            998 699999999999998

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-34  Score=190.00  Aligned_cols=85  Identities=52%  Similarity=0.813  Sum_probs=79.9

Q ss_pred             HHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceEEEE
Q 034128           14 MRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIV   93 (103)
Q Consensus        14 ~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAlsi~   93 (103)
                      .+|+++|+++|+|..++|.|+|+.|+||++    +|+ +||+|+|||+.|+|||+|+|||+||.+|+++|.++||||+|+
T Consensus         6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~----g~~-~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~   80 (90)
T COG0271           6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAG----GGG-SHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALH   80 (90)
T ss_pred             HHHHHHHHhcCCCceEEEEecccccccCCC----CCC-CeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeE
Confidence            689999999999999999999999999996    335 999999999999999999999999999999999779999999


Q ss_pred             ecChhHHhhC
Q 034128           94 AKTPQEAALK  103 (103)
Q Consensus        94 t~tp~Ew~~~  103 (103)
                      |+||+||..+
T Consensus        81 t~t~~e~~~~   90 (90)
T COG0271          81 TYTPEEWKGK   90 (90)
T ss_pred             eeccchhccC
Confidence            9999999753

>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-30  Score=169.33  Aligned_cols=81  Identities=42%  Similarity=0.665  Sum_probs=76.8

Q ss_pred             hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128            9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH   88 (103)
Q Consensus         9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH   88 (103)
                      ++..+++|+++|+++|.|.+|+|+|.|           |||| +.|+|+|||+.|+|||+|+|||+||++|+++|+ .||
T Consensus         1 m~~~e~~l~~~L~~~l~p~~v~V~D~S-----------gGCG-~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik-~iH   67 (85)
T KOG3348|consen    1 MTVTEERLEELLTEALEPEHVEVQDVS-----------GGCG-SMFDVVIVSAAFEGKSLLARHRLVNSILAEEIK-EIH   67 (85)
T ss_pred             CcchHHHHHHHHHhhcCceEEEEEEcC-----------CCcc-ceEEEEEEccccCChHHHHHHHHHHHHHHHHHH-HHh
Confidence            356789999999999999999999998           6699 999999999999999999999999999999998 899


Q ss_pred             eEEEEecChhHHhh
Q 034128           89 ALSIVAKTPQEAAL  102 (103)
Q Consensus        89 Alsi~t~tp~Ew~~  102 (103)
                      ||+++||||++|..
T Consensus        68 alt~kt~t~~~w~~   81 (85)
T KOG3348|consen   68 ALTIKTYTPEEWSK   81 (85)
T ss_pred             hheeeecChhhhcc
Confidence            99999999999974

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.95  E-value=1.2e-27  Score=154.16  Aligned_cols=76  Identities=34%  Similarity=0.503  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhc-CCcceE
Q 034128           12 RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN-SGLHAL   90 (103)
Q Consensus        12 ~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~-~~iHAl   90 (103)
                      ..++|+..|+++||.++++|+.+               | +||.+++||+.|+|||+|+|||+||..|.++|. +.||||
T Consensus         2 ~~e~Ik~ll~~~L~~e~v~V~Gd---------------g-~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAl   65 (80)
T COG5007           2 DNEEIKSLLENALPLEEVEVEGD---------------G-SHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHAL   65 (80)
T ss_pred             CHHHHHHHHHhcCCccEEEEecC---------------C-ceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEE
Confidence            35899999999999999999976               4 899999999999999999999999999999998 569999


Q ss_pred             EEEecChhHHhhC
Q 034128           91 SIVAKTPQEAALK  103 (103)
Q Consensus        91 si~t~tp~Ew~~~  103 (103)
                      +|+||||+||.++
T Consensus        66 sikt~Tp~eW~~~   78 (80)
T COG5007          66 SIKTYTPAEWARD   78 (80)
T ss_pred             EeeecCHHHhhhc
Confidence            9999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
2dhm_A	107	Solution Structure Of The Bola Protein From Escheri		8e-13
1v60_A	123	Solution Structure Of Bola1 Protein From Mus Muscul		2e-12
2kdn_A	108	Solution Structure Of Pfe0790c, A Putative Bola-Lik		5e-08
1xs3_A	80	Solution Structure Analysis Of The Xc975 Protein Le		2e-07
1v9j_A	113	Solution Structure Of A Bola-Like Protein From Mus		2e-07
3tr3_A	82	Structure Of A Bola Protein Homologue From Coxiella		3e-07
3o2e_A	105	Crystal Structure Of A Bol-Like Protein From Babesi		8e-06
2kz0_A	76	Solution Structure Of A Bola Protein (Ech_0303) Fro		9e-05

>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia Coli Length = 107

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 3  SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
          S G++ ++ R  R+E KLR+A +   LE+ D S++H   A        E+HF + +VS +
Sbjct: 2  SSGSSGMMIRE-RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDR 54
Query: 63 FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
          F G+  +NRHRM+Y  L++EL++ +HAL++   T +E
Sbjct: 55 FTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 91

>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus Length = 123

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 16  METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
           +  KL  AL   VLE+ + S    GHA    S   ETHF + +VS +FEG + + RHR+V
Sbjct: 31  IRAKLEQALSPEVLELRNES---GGHAVPAGS---ETHFRVAVVSSRFEGMSPLQRHRLV 84
Query: 76  YQVLSDELNSGLHALSIVAKTPQE 99
           ++ LS+EL   +HAL+I AKTP +
Sbjct: 85  HEALSEELAGPVHALAIQAKTPAQ 108

>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like Protein From The Protozoan Parasite Plasmodium Falciparum Length = 108

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 13/84 (15%)
Query: 16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
          +E KL SAL+ T LE+ D           K    G T FD  IVS  FE K L++RHR+V
Sbjct: 29 IEDKLSSALKPTFLELVD-----------KSCGCG-TSFDAVIVSNNFEDKKLLDRHRLV 76
Query: 76 YQVLSDELNSGLHALSIVAKTPQE 99
            +L +EL + +HA S+   TP E
Sbjct: 77 NTILKEELQN-IHAFSMKCHTPLE 99

>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein Length = 80

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 53  HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEA 100
           HF+  +VSP F GK  + RHRMVY  L + +   +HAL +   TP EA
Sbjct: 33  HFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDEA 80

>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus Musculus Length = 113

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           S GA  +   A  +  KLR  LEA  +E++D +            N   T F + +VS K
Sbjct: 22  SEGAATMELSADYLREKLRQDLEAEHVEVEDTT-----------LNRCATSFRVLVVSAK 70
Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           FEGK L+ RHR+V + L++EL   +HA      TP++
Sbjct: 71  FEGKPLLQRHRLVNECLAEELPH-IHAFEQKTLTPEQ 106

>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella Burnetii Length = 82

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 53 HFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
          HF+  ++ P FEG+  + RHR+VY  L     S +HALS+   TP E
Sbjct: 32 HFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSLKTYTPDE 78

>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           ++G  +++++++ +E +LRS L    L++ D            +S      F+  IVS +
Sbjct: 16  TQGPGSMVSKSI-VEERLRSMLSPQFLKVTD------------NSGGCGAAFNAYIVSQQ 62
Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAALK 103
           FEGK L++R R+V   ++ E+   +HA ++   TP E   K
Sbjct: 63  FEGKGLLDRQRLVNSAIAAEMPQ-IHAFTMKCLTPGEWEAK 102

>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From Ehrlichia Chaffeensis. Seattle Structural Genomics Center For Infectious Disease Target Ehcha.10365.A Length = 76

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 7/49 (14%)
Query: 44 VKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSI 92
          V D+N    H+ +K++S +F+GK+ + +HRM+Y+VL D LN  +HA+ I
Sbjct: 30 VGDNN----HYSIKVISSQFQGKSKLEQHRMIYKVL-DGLN--IHAIQI 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	3e-36
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	2e-35
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	7e-28
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	1e-25
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	4e-25
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	9e-21
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	1e-20
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	2e-17
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	7e-15

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score =  118 bits (297), Expect = 3e-36
 Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1   MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVS 60
             S G+ A       +  KL  AL   VLE+ + S  HA  A        ETHF + +VS
Sbjct: 16  RGSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG------SETHFRVAVVS 69

Query: 61  PKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
            +FEG + + RHR+V++ LS+EL   +HAL+I AKTP +
Sbjct: 70  SRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 108

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score =  115 bits (291), Expect = 2e-35
 Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
          R+E KLR+A +   LE+ D S++H   A        E+HF + +VS +F G+  +NRHRM
Sbjct: 13 RIEEKLRAAFQPVFLEVVDESYRHNVPA------GSESHFKVVLVSDRFTGERFLNRHRM 66

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          +Y  L++EL++ +HAL++   T +E
Sbjct: 67 IYSTLAEELSTTVHALALHTYTIKE 91

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 96.8 bits (241), Expect = 7e-28
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           S GA  +   A  +  KLR  LEA  +E++D +                T F + +VS K
Sbjct: 22  SEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCA-----------TSFRVLVVSAK 70

Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           FEGK L+ RHR+V + L++EL   +HA      TP++
Sbjct: 71  FEGKPLLQRHRLVNECLAEEL-PHIHAFEQKTLTPEQ 106

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 91.4 bits (227), Expect = 1e-25
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 13/85 (15%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
           +E KL SAL+ T LE+ D S                T FD  IVS  FE K L++RHR+
Sbjct: 28 VIEDKLSSALKPTFLELVDKSCGC------------GTSFDAVIVSNNFEDKKLLDRHRL 75

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          V  +L +EL   +HA S+   TP E
Sbjct: 76 VNTILKEEL-QNIHAFSMKCHTPLE 99

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 89.4 bits (222), Expect = 4e-25
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 15 RMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRM 74
           +E +LRS L    L++ D S                  F+  IVS +FEGK L++R R+
Sbjct: 27 IVEERLRSMLSPQFLKVTDNSGGC------------GAAFNAYIVSQQFEGKGLLDRQRL 74

Query: 75 VYQVLSDELNSGLHALSIVAKTPQE 99
          V   ++ E+   +HA ++   TP E
Sbjct: 75 VNSAIAAEM-PQIHAFTMKCLTPGE 98

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 77.8 bits (192), Expect = 9e-21
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 23  ALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDE 82
            L+A  +     S        V+       HF+  +VSP F GK  + RHRMVY  L + 
Sbjct: 5   PLDAETIRKLIESGLPEARVDVQGE--DGVHFEATVVSPAFVGKAPLARHRMVYATLGEL 62

Query: 83  LNSGLHALSIVAKTPQEA 100
           +   +HAL +   TP EA
Sbjct: 63  MGGAIHALQLKTLTPDEA 80

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 77.4 bits (191), Expect = 1e-20
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 42  AAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQEAA 101
           + V  +     HF+  ++ P FEG+  + RHR+VY  L   + S +HALS+   TP E  
Sbjct: 21  SRVISAEGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHALSLKTYTPDEYE 80

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 70.1 bits (172), Expect = 2e-17
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 50  GETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSG-LHALSIVAKTPQEAA 101
             +HF +  V   F+G + V + + VY  L + +    +HA+SI A TP E A
Sbjct: 29  DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWA 81

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 62.8 bits (153), Expect = 7e-15
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 16 METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
          +E  +R+A     + +  +                  H+ +K++S +F+GK+ + +HRM+
Sbjct: 11 LELLIRNAFPEAEITVTSLV-------------GDNNHYSIKVISSQFQGKSKLEQHRMI 57

Query: 76 YQVLSDELNSGLHALSIVAKT 96
          Y+VL       +HA+ I    
Sbjct: 58 YKVLDGL---NIHAIQIQTGC 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	100.0
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	100.0
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	100.0
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	100.0
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	100.0
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.98
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.97
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.97
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.96
1ylq_A	96	Putative nucleotidyltransferase, hypothetical Pro	96.36
2rff_A	111	Putative nucleotidyltransferase; NP_343093.1, nucl	90.87

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=100.00  E-value=5.7e-37  Score=207.57  Aligned_cols=87  Identities=38%  Similarity=0.587  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcce
Q 034128           10 IARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHA   89 (103)
Q Consensus        10 ~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHA   89 (103)
                      |+++++|+++|+++|+|+.|+|.|+|++|+||.    | |+ +||+|+|||+.|+||++|+||||||++|+++|+++|||
T Consensus         8 m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~----G-~g-sHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHA   81 (107)
T 2dhm_A            8 MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPA----G-SE-SHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHA   81 (107)
T ss_dssp             CCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCC----C-SC-CCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEECcccccCCC----C-CC-ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcce
Confidence            568899999999999999999999999999975    2 35 99999999999999999999999999999999977999


Q ss_pred             EEEEecChhHHhh
Q 034128           90 LSIVAKTPQEAAL  102 (103)
Q Consensus        90 lsi~t~tp~Ew~~  102 (103)
                      |+|+||||+||++
T Consensus        82 Lsi~t~TP~Ew~~   94 (107)
T 2dhm_A           82 LALHTYTIKEWEG   94 (107)
T ss_dssp             CEEEEECHHHHHT
T ss_pred             EEEEecCHHHHHh
Confidence            9999999999985

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=100.00  E-value=3.5e-36  Score=208.02  Aligned_cols=92  Identities=41%  Similarity=0.550  Sum_probs=84.6

Q ss_pred             CCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhc
Q 034128            5 GANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN   84 (103)
Q Consensus         5 ~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~   84 (103)
                      .++...+++++|+++|+++|+|+.|+|+|+|++|+||.    | |+ +||+|+|||+.|+||++|+||||||++|+++|+
T Consensus        20 ~~~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~----G-~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~   93 (123)
T 1v60_A           20 GSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPA----G-SE-THFRVAVVSSRFEGMSPLQRHRLVHEALSEELA   93 (123)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCT----T-CC-SEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCC----C-CC-CeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHc
Confidence            34456778999999999999999999999999999875    2 34 999999999999999999999999999999999


Q ss_pred             CCcceEEEEecChhHHhh
Q 034128           85 SGLHALSIVAKTPQEAAL  102 (103)
Q Consensus        85 ~~iHAlsi~t~tp~Ew~~  102 (103)
                      ++||||+|+||||+||++
T Consensus        94 ~~IHALsi~t~TP~Ew~~  111 (123)
T 1v60_A           94 GPVHALAIQAKTPAQWRE  111 (123)
T ss_dssp             TTCSEEEEEEECTTTTTT
T ss_pred             CCcceeEeEecCHHHHHh
Confidence            779999999999999986

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=100.00  E-value=8.8e-35  Score=198.45  Aligned_cols=90  Identities=37%  Similarity=0.534  Sum_probs=80.5

Q ss_pred             CCCCCCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Q 034128            1 MTSRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLS   80 (103)
Q Consensus         1 ~~~~~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~   80 (103)
                      |++++...+++.+++|+++|+++|+|+.|+|+|+|.          +||| +||+|+|||+.|+||++|+|||+||++|+
T Consensus        20 ~~~~~~~~M~m~~~~I~~~L~~~l~p~~l~V~DeS~----------~G~g-sHF~v~IVS~~F~Gks~V~RHRlVy~aL~   88 (113)
T 1v9j_A           20 RGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTL----------NRCA-TSFRVLVVSAKFEGKPLLQRHRLVNECLA   88 (113)
T ss_dssp             SCCCCSSSSSSCHHHHHHHHHHHHTCSEEEEEECCS----------SSSC-CCEEEEEECSHHHHSCHHHHHHHHHHHTT
T ss_pred             ccCcccccccCcHHHHHHHHHhhCCCcEEEEEeccC----------CCCC-ceEEEEEEchhhCCCCHHHHHHHHHHHHH
Confidence            445555556578999999999999999999999982          3346 99999999999999999999999999999


Q ss_pred             HHhcCCcceEEEEecChhHHhh
Q 034128           81 DELNSGLHALSIVAKTPQEAAL  102 (103)
Q Consensus        81 ~~i~~~iHAlsi~t~tp~Ew~~  102 (103)
                      ++|+. ||||+|+||||+||++
T Consensus        89 eei~~-IHALsi~t~TP~Ew~~  109 (113)
T 1v9j_A           89 EELPH-IHAFEQKTLTPEQWTR  109 (113)
T ss_dssp             TTGGG-CSSEEEEEECHHHHHH
T ss_pred             HHHhc-CceEEEEecChHHHHH
Confidence            99994 9999999999999986

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=100.00  E-value=5.9e-34  Score=193.02  Aligned_cols=83  Identities=42%  Similarity=0.600  Sum_probs=76.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 034128            7 NAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSG   86 (103)
Q Consensus         7 ~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~   86 (103)
                      .+.|+.+++|+++|+++|+|+.|+|.|+|           +||| +||+|+|||+.|+||++|+||||||++|+++|+. 
T Consensus        20 ~~~Mm~~~~I~~~L~~~l~p~~l~V~DeS-----------~G~g-sHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-   86 (108)
T 2kdn_A           20 QGHMCIQKVIEDKLSSALKPTFLELVDKS-----------CGCG-TSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-   86 (108)
T ss_dssp             TTSCSHHHHHHHHHHHHHCCSEEEEEECC-----------CSSS-CCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-
T ss_pred             cCCCCcHHHHHHHHHhhCCCcEEEEEeCC-----------CCCC-ceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-
Confidence            34467899999999999999999999998           2356 9999999999999999999999999999999994 


Q ss_pred             cceEEEEecChhHHhh
Q 034128           87 LHALSIVAKTPQEAAL  102 (103)
Q Consensus        87 iHAlsi~t~tp~Ew~~  102 (103)
                      ||||+|+||||+||++
T Consensus        87 IHALsi~t~TP~Ew~~  102 (108)
T 2kdn_A           87 IHAFSMKCHTPLEYDK  102 (108)
T ss_dssp             CSCEEEEEECHHHHHH
T ss_pred             CceEEEEecChHHHHH
Confidence            9999999999999985

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=100.00  E-value=3.5e-34  Score=193.30  Aligned_cols=82  Identities=34%  Similarity=0.547  Sum_probs=76.6

Q ss_pred             hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128            9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH   88 (103)
Q Consensus         9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH   88 (103)
                      .|+++++|+++|+++|+|+.|+|.|+|           +||| +||+|+|||+.|+|||+|+|||+||++|+++|+ +||
T Consensus        21 ~M~~~~~I~~kL~~~l~p~~l~V~D~S-----------~g~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IH   87 (105)
T 3o2e_A           21 SMVSKSIVEERLRSMLSPQFLKVTDNS-----------GGCG-AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIH   87 (105)
T ss_dssp             CCCCHHHHHHHHHHHHCCSEEEEEECC-----------BTTB-EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEE
T ss_pred             cCcHHHHHHHHHHhhCCCCEEEEEECC-----------CCCC-cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCc
Confidence            378899999999999999999999998           2346 999999999999999999999999999999998 899


Q ss_pred             eEEEEecChhHHhhC
Q 034128           89 ALSIVAKTPQEAALK  103 (103)
Q Consensus        89 Alsi~t~tp~Ew~~~  103 (103)
                      ||+|+||||+||+++
T Consensus        88 ALsi~t~TP~Ew~~~  102 (105)
T 3o2e_A           88 AFTMKCLTPGEWEAK  102 (105)
T ss_dssp             EEEEEEECHHHHHHT
T ss_pred             eeEEEeCCHHHHHHh
Confidence            999999999999864

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.98  E-value=7.2e-33  Score=179.70  Aligned_cols=79  Identities=28%  Similarity=0.541  Sum_probs=72.4

Q ss_pred             hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128            9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH   88 (103)
Q Consensus         9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH   88 (103)
                      .|+.+++|+++|+++|+|+.|+|.+.              || +||+|+|||+.|+|||+|+|||+||++|+++|+++||
T Consensus         3 ~Mm~~~~I~~~L~~~l~~~~l~V~~g--------------~g-shf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iH   67 (82)
T 3tr3_A            3 AMVTTHDIKQWIETGLSESRVISAEG--------------DG-HHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIH   67 (82)
T ss_dssp             -CCCHHHHHHHHHHHSTTCEEEEEEE--------------CS-SEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCS
T ss_pred             ccchHHHHHHHHHhhCCCcEEEEEcC--------------CC-CeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence            35678999999999999999999932              35 8999999999999999999999999999999987899


Q ss_pred             eEEEEecChhHHhh
Q 034128           89 ALSIVAKTPQEAAL  102 (103)
Q Consensus        89 Alsi~t~tp~Ew~~  102 (103)
                      ||+|+||||+||++
T Consensus        68 AL~i~t~Tp~Ew~~   81 (82)
T 3tr3_A           68 ALSLKTYTPDEYER   81 (82)
T ss_dssp             EEEEEEECHHHHHC
T ss_pred             eEEEEeCCHHHHhc
Confidence            99999999999975

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.97  E-value=3.6e-32  Score=175.61  Aligned_cols=77  Identities=34%  Similarity=0.585  Sum_probs=71.3

Q ss_pred             hhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q 034128            9 VIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLH   88 (103)
Q Consensus         9 ~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iH   88 (103)
                      +|..+++|+++|+++|+|+.|+|.+              +|| +||+|+|||+.|+|||+|+|||+||++|+++|+++||
T Consensus         4 ~mm~~~~I~~~L~~~l~~~~l~V~G--------------~~g-sHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iH   68 (80)
T 1xs3_A            4 RPLDAETIRKLIESGLPEARVDVQG--------------EDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIH   68 (80)
T ss_dssp             SCCHHHHHHHHHHHHSSSCEEEEES--------------CTT-SCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCS
T ss_pred             ccCCHHHHHHHHHhhCCCcEEEEEc--------------CCC-CEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcc
Confidence            3667899999999999999999992              135 8999999999999999999999999999999997799


Q ss_pred             eEEEEecChhHH
Q 034128           89 ALSIVAKTPQEA  100 (103)
Q Consensus        89 Alsi~t~tp~Ew  100 (103)
                      ||+|+||||+||
T Consensus        69 ALsi~t~Tp~E~   80 (80)
T 1xs3_A           69 ALQLKTLTPDEA   80 (80)
T ss_dssp             CCEEEEECGGGC
T ss_pred             eEEEEecCCCCC
Confidence            999999999997

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.97  E-value=2.6e-31  Score=177.10  Aligned_cols=76  Identities=29%  Similarity=0.443  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhc-CCcce
Q 034128           11 ARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELN-SGLHA   89 (103)
Q Consensus        11 ~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~-~~iHA   89 (103)
                      +.+++|+++|+++|+|+.|+|.+               || +||+|+|||+.|+|||+|+||||||++|+++|+ ++|||
T Consensus         6 m~~~~I~~~L~~~l~p~~l~V~G---------------~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHA   69 (97)
T 1ny8_A            6 MENNEIQSVLMNALSLQEVHVSG---------------DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHA   69 (97)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEEE---------------SS-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSE
T ss_pred             cCHHHHHHHHHhhCCCcEEEEEc---------------CC-ceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcce
Confidence            35689999999999999999991               24 899999999999999999999999999999998 57999


Q ss_pred             EEEEecChhHHhh
Q 034128           90 LSIVAKTPQEAAL  102 (103)
Q Consensus        90 lsi~t~tp~Ew~~  102 (103)
                      |+|+||||+||++
T Consensus        70 Lsi~t~TP~Ew~~   82 (97)
T 1ny8_A           70 VSIKAYTPAEWAR   82 (97)
T ss_dssp             EEEEECCHHHHHH
T ss_pred             EEeEecChHHHHh
Confidence            9999999999985

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.96  E-value=1.3e-30  Score=166.99  Aligned_cols=76  Identities=24%  Similarity=0.540  Sum_probs=70.9

Q ss_pred             CcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcC
Q 034128            6 ANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNS   85 (103)
Q Consensus         6 ~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~   85 (103)
                      +|.+|..+++|+++|+++|+|+.|+|.|+|           | || +||+|+|||+.|+|||+|+|||+||++|+++   
T Consensus         1 ~g~M~m~~~~I~~~L~~~l~~~~l~V~d~S-----------G-~g-~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---   64 (76)
T 2kz0_A            1 PGSMTVTQSQLELLIRNAFPEAEITVTSLV-----------G-DN-NHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---   64 (76)
T ss_dssp             CCCSSCTTHHHHHHHHHHCTTEEEEEECCS-----------S-TT-SCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---
T ss_pred             CCcCcccHHHHHHHHHhhCCCcEEEEEECC-----------C-Cc-cEEEEEEEchHhCCCCHHHHHHHHHHHhccC---
Confidence            467777889999999999999999999998           2 35 8999999999999999999999999999999   


Q ss_pred             CcceEEEEecCh
Q 034128           86 GLHALSIVAKTP   97 (103)
Q Consensus        86 ~iHAlsi~t~tp   97 (103)
                      +||||+|+||||
T Consensus        65 ~iHALsi~t~tp   76 (76)
T 2kz0_A           65 NIHAIQIQTGCK   76 (76)
T ss_dssp             CCCSSSEEECCC
T ss_pred             CceEEEEEEeCC
Confidence            799999999998

>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5

Probab=96.36  E-value=0.029  Score=35.51  Aligned_cols=77  Identities=10%  Similarity=0.060  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCcc-ceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceE
Q 034128           12 RAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGE-THFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHAL   90 (103)
Q Consensus        12 ~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~e-sHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAl   90 (103)
                      ..++|++.|+..+++..+.+...-        ++|+.... |.++|.|+.+.  +.+...+-++... |.+.+  .-+.+
T Consensus         3 ~l~~i~~~l~~~~~~~~v~LFGS~--------ArG~~~~~~SDiDllV~~~~--~~~~~~~~~l~~~-l~~~~--~~~~v   69 (96)
T 1ylq_A            3 HMKEIKEITKKDVQDAEIYLYGSV--------VEGDYSIGLSDIDVAIVSDV--FEDRNRKLEFFGK-ITKKF--FDSPF   69 (96)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEESHH--------HHCCSSSCCCSEEEEEECGG--GGSHHHHHHHHHH-HHHHT--TTCSE
T ss_pred             HHHHHHHHHHHHcCCcEEEEEEEE--------EeCCCCCCCCceEEEEEeCC--CCCHHHHHHHHHH-HHHhh--cCCCe
Confidence            467899999988988888888653        23433355 89999999986  5666666665544 44441  23578


Q ss_pred             EEEecChhHHh
Q 034128           91 SIVAKTPQEAA  101 (103)
Q Consensus        91 si~t~tp~Ew~  101 (103)
                      .+..+||+||+
T Consensus        70 d~~v~~~~~~~   80 (96)
T 1ylq_A           70 EFHILTKKEWK   80 (96)
T ss_dssp             EEEEECHHHHH
T ss_pred             EEEEECHHHHc
Confidence            99999999985

>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}

Probab=90.87  E-value=0.42  Score=31.01  Aligned_cols=76  Identities=12%  Similarity=0.112  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcC-CCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceE
Q 034128           12 RAMRMETKLRSAL-EATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHAL   90 (103)
Q Consensus        12 ~~~~I~~~L~~~l-~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAl   90 (103)
                      ...++...|.+.+ +...+-++..-        ++|+....|.++|.|+.+...+...+.+-    ..|.+.+.   ..+
T Consensus        18 ~l~~~~~~l~~~~~~v~~v~LFGS~--------ArG~~~~~SDIDl~V~~~~~~~~~~~~~~----~~l~~~l~---~~V   82 (111)
T 2rff_A           18 LAKEIVEEVASSFPNLEEVYIFGSR--------ARGDYLDTSDIDILFVFKGIKEMNVFDRM----YMVSRFIR---GNV   82 (111)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEESHH--------HHSCCCTTCCEEEEEEESSCTTCCHHHHH----HHHGGGCC---SSE
T ss_pred             HHHHHHHHHHHHcCCccEEEEEeee--------ecCCCCCCCCEEEEEEecCCCChhHHHHH----HHHHHHhC---CCE
Confidence            3445555666677 44567777542        22322234999999998877666555543    33444443   357


Q ss_pred             EEEecChhHHhh
Q 034128           91 SIVAKTPQEAAL  102 (103)
Q Consensus        91 si~t~tp~Ew~~  102 (103)
                      .+.+++|++|++
T Consensus        83 Dlv~~~~~~~~~   94 (111)
T 2rff_A           83 DYIVLDEGEKDR   94 (111)
T ss_dssp             EEEEEEGGGGGG
T ss_pred             EEEECCHHHHHH
Confidence            888889999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	8e-23
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	3e-18

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.0 bits (205), Expect = 8e-23
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 3   SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPK 62
           S GA  +   A  +  KLR  LEA  +E++D +                T F + +VS K
Sbjct: 22  SEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCA-----------TSFRVLVVSAK 70

Query: 63  FEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 99
           FEGK L+ RHR+V + L++EL   +HA      TP++
Sbjct: 71  FEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 71.0 bits (174), Expect = 3e-18
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 16  METKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMV 75
           +++ L +AL    + +                    +HF +  V   F+G + V + + V
Sbjct: 11  IQSVLMNALSLQEVHVSG----------------DGSHFQVIAVGELFDGMSRVKKQQTV 54

Query: 76  YQVLSDELNSG-LHALSIVAKTPQEAA 101
           Y  L + +    +HA+SI A TP E A
Sbjct: 55  YGPLMEYIADNRIHAVSIKAYTPAEWA 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.97
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.95
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	98.22

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.9e-33  Score=187.81  Aligned_cols=89  Identities=37%  Similarity=0.554  Sum_probs=81.8

Q ss_pred             CCCCcchhhHHHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHH
Q 034128            3 SRGANAVIARAMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDE   82 (103)
Q Consensus         3 ~~~~~~~~~~~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~   82 (103)
                      +.+.++++..+++|+++|+++|+|+.|+|.|+|+.|+          | +||+|+|||+.|+||++|+|||+||++|+++
T Consensus        22 ~~~~~~m~~~~e~I~~kL~~~~~~~~leV~D~S~~h~----------G-~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~e   90 (113)
T d1v9ja_          22 SEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRC----------A-TSFRVLVVSAKFEGKPLLQRHRLVNECLAEE   90 (113)
T ss_dssp             CCCSSSSSSCHHHHHHHHHHHHTCSEEEEEECCSSSS----------C-CCEEEEEECSHHHHSCHHHHHHHHHHHTTTT
T ss_pred             CCCCCCCcccHHHHHHHHHhhCCCcEEEEEecCCCCC----------C-ceEEEEEEeccccCCchhHHHHhHHHHHHHH
Confidence            3667778888999999999999999999999997553          4 8999999999999999999999999999999


Q ss_pred             hcCCcceEEEEecChhHHhhC
Q 034128           83 LNSGLHALSIVAKTPQEAALK  103 (103)
Q Consensus        83 i~~~iHAlsi~t~tp~Ew~~~  103 (103)
                      |+ .||||+|+||||+||+++
T Consensus        91 i~-~iHAlsi~t~Tp~Ew~~~  110 (113)
T d1v9ja_          91 LP-HIHAFEQKTLTPEQWTRQ  110 (113)
T ss_dssp             GG-GCSSEEEEEECHHHHHHS
T ss_pred             Hh-cceeeEEEeCCHHHHHHh
Confidence            97 699999999999999864

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.6e-29  Score=163.58  Aligned_cols=74  Identities=30%  Similarity=0.439  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcCCCceEEEEecCccccCCccccCCCCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcC-CcceEE
Q 034128           13 AMRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNS-GLHALS   91 (103)
Q Consensus        13 ~~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~-~iHAls   91 (103)
                      .++|+++|.++|+++.|+|.++               | +||.|+|||+.|+|||+|+|||+||++|+++|++ .||||+
T Consensus         8 ~~eI~~~L~~~l~~~~v~V~g~---------------g-~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAls   71 (97)
T d1ny8a_           8 NNEIQSVLMNALSLQEVHVSGD---------------G-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS   71 (97)
T ss_dssp             CHHHHHHHHHHHCCSEEEEEES---------------S-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHhhCCCcEEEEeCC---------------C-cEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeE
Confidence            5789999999999999999754               3 8999999999999999999999999999999975 699999


Q ss_pred             EEecChhHHhh
Q 034128           92 IVAKTPQEAAL  102 (103)
Q Consensus        92 i~t~tp~Ew~~  102 (103)
                      |+|+||+||+.
T Consensus        72 ikt~Tp~Ew~~   82 (97)
T d1ny8a_          72 IKAYTPAEWAR   82 (97)
T ss_dssp             EEECCHHHHHH
T ss_pred             eEeCCHHHHHH
Confidence            99999999974

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.22  E-value=3.5e-06  Score=53.03  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=60.4

Q ss_pred             HHHHHHHHhcCCCceEEEEecCccccCCccccCCC-CccceeEEEEECCCCCCCCHHHHHHHHHHHHHHHhcCCcceEEE
Q 034128           14 MRMETKLRSALEATVLEIDDVSHKHAGHAAVKDSN-SGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSI   92 (103)
Q Consensus        14 ~~I~~~L~~~l~~~~v~V~d~S~~H~gH~~~~~~~-~~esHf~i~IvS~~F~G~s~l~RhrlVy~~L~~~i~~~iHAlsi   92 (103)
                      ++|++.++..++++.|-++..-        +.|+. .+.|.++|.||++.+.  +..+|.+.+..++...+   -+.+.+
T Consensus         2 ~~i~e~ik~~~~~~kViLFGS~--------ArG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~---~~pvd~   68 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYGSV--------VEGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFF---DSPFEF   68 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEESHH--------HHCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTT---TCSEEE
T ss_pred             HHHHHHHHHHCCCcEEEEECcc--------ccCCCCCCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhcc---CCCeEE
Confidence            5789999999999999998652        23332 1349999999999996  46899999988887543   367999


Q ss_pred             EecChhHHhh
Q 034128           93 VAKTPQEAAL  102 (103)
Q Consensus        93 ~t~tp~Ew~~  102 (103)
                      .++||+||+.
T Consensus        69 ~v~tpeefe~   78 (90)
T d1ylqa1          69 HILTKKEWKM   78 (90)
T ss_dssp             EEECHHHHHH
T ss_pred             EEcCHHHHHH
Confidence            9999999973