Citrus Sinensis ID: 034167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MSIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccccccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHccccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHHccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MSIWTITTRYLILSYTnkvsslpecenyrylvpadltvGQFVYVIRKRIKLSAEKAIFIFvdnvlpptgAIMSAIYEEKKDEDGFLYVTYsgentfgshipv
Flexible Loop (DISEMBL)
MSIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFifvdnvlppTGAIMSAIYEEKKDEDGFLYVTYSgentfgshipv
Low Complexity Region (SEG)
MSIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
Disordered region (IsUnstruct)
**IWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE*********
Disordered Region (DISOPRED)
***WTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS*I**
Disordered Region (DISEMBL)
MSIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
Disordered Region (DISPRO)
*SIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS*I**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIWTITTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q8VYK7	121	Autophagy-related protein	yes	no	0.803	0.677	0.804	1e-33
Q9LZZ9	121	Autophagy-related protein	no	no	0.921	0.776	0.702	2e-33
Q8S926	122	Autophagy-related protein	no	no	0.774	0.647	0.797	5e-33
Q6Z1D5	120	Autophagy-related protein	yes	no	0.764	0.65	0.807	3e-32
A2YS06	120	Autophagy-related protein	N/A	no	0.764	0.65	0.807	3e-32
Q8LEM4	122	Autophagy-related protein	no	no	0.774	0.647	0.784	4e-32
Q6C794	124	Autophagy-related protein	yes	no	0.774	0.637	0.797	8e-32
Q7XPR1	119	Autophagy-related protein	yes	no	0.764	0.655	0.794	9e-32
A2XXR7	119	Autophagy-related protein	N/A	no	0.764	0.655	0.794	9e-32
Q9SL04	120	Autophagy-related protein	no	no	0.764	0.65	0.794	1e-31

>sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEK
Sbjct: 40  SDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIP 101
           KD+DGFLYVTYSGENTFG   P
Sbjct: 100 KDDDGFLYVTYSGENTFGFGSP 121

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZZ9|ATG8G_ARATH Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 79/94 (84%)

Query: 7   TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLP 66
           + R  ++   ++ S +P  +  +YLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLP
Sbjct: 27  SDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLP 86

Query: 67  PTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 100
           PTGA+MS IY+E K+EDGFLYVTYSGENTFGS +
Sbjct: 87  PTGAMMSTIYDENKEEDGFLYVTYSGENTFGSSM 120

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S926|ATG8E_ARATH Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=2

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 73/79 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE+K
Sbjct: 41  SEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDK 100

Query: 80  KDEDGFLYVTYSGENTFGS 98
           KDEDGFLY+TYSGENTFG+
Sbjct: 101 KDEDGFLYITYSGENTFGA 119

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 70/78 (89%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE 
Sbjct: 40  SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEEN 99

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+TYSGENTFG
Sbjct: 100 KDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 70/78 (89%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYEE 
Sbjct: 40  SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEEN 99

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+TYSGENTFG
Sbjct: 100 KDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LEM4|ATG8A_ARATH Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 70/79 (88%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE 
Sbjct: 40  SDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEH 99

Query: 80  KDEDGFLYVTYSGENTFGS 98
           KDEDGFLY+TYSGENTFGS
Sbjct: 100 KDEDGFLYMTYSGENTFGS 118

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6C794|ATG8_YARLI Autophagy-related protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG8 PE=3 SV=2

 Score =  135 bits (339), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 71/79 (89%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLS+E+AIFIFVD+VLPPT A+MS+IYEE 
Sbjct: 39  SDIPVIDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEH 98

Query: 80  KDEDGFLYVTYSGENTFGS 98
           KDEDGFLYVTYSGENTFG 
Sbjct: 99  KDEDGFLYVTYSGENTFGD 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 69/78 (88%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE 
Sbjct: 40  SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEEN 99

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+TYSGENTFG
Sbjct: 100 KDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XXR7|ATG8B_ORYSI Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 69/78 (88%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYEE 
Sbjct: 40  SDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEEN 99

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+TYSGENTFG
Sbjct: 100 KDEDGFLYMTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SL04|ATG8D_ARATH Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 70/78 (89%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYEE 
Sbjct: 40  SDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEH 99

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY++YSGENTFG
Sbjct: 100 KDEDGFLYMSYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
301601262	122	autophagy 8 [Ipomoea nil]	0.813	0.680	0.879	3e-36
255569887	122	gaba(A) receptor-associated protein, put	0.813	0.680	0.879	1e-35
224125192	122	predicted protein [Populus trichocarpa]	0.813	0.680	0.867	2e-35
224071541	122	predicted protein [Populus trichocarpa]	0.813	0.680	0.855	4e-35
356540577	123	PREDICTED: autophagy-related protein 8f-	0.813	0.674	0.843	9e-34
356497149	123	PREDICTED: autophagy-related protein 8f-	0.813	0.674	0.843	1e-33
21615419	121	microtubule associated protein [Cicer ar	0.794	0.669	0.864	1e-33
357476885	122	Autophagy-related protein 8f [Medicago t	0.794	0.663	0.864	1e-33
359806567	122	uncharacterized protein LOC100818620 [Gl	0.774	0.647	0.873	2e-33
388516607	122	unknown [Lotus japonicus]	0.774	0.647	0.873	2e-33

>gi|301601262|dbj|BAJ13303.1| autophagy 8 [Ipomoea nil]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 77/83 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFG HIPV
Sbjct: 100 KDEDGFLYVTYSGENTFGDHIPV 122

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569887|ref|XP_002525907.1| gaba(A) receptor-associated protein, putative [Ricinus communis] gi|223534821|gb|EEF36511.1| gaba(A) receptor-associated protein, putative [Ricinus communis]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 77/83 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK
Sbjct: 40  SDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFGS IP+
Sbjct: 100 KDEDGFLYVTYSGENTFGSEIPL 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125192|ref|XP_002329916.1| predicted protein [Populus trichocarpa] gi|118488644|gb|ABK96134.1| unknown [Populus trichocarpa] gi|222871153|gb|EEF08284.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 77/83 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYE+K
Sbjct: 40  SDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEDK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFGS IP+
Sbjct: 100 KDEDGFLYVTYSGENTFGSQIPL 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071541|ref|XP_002303509.1| predicted protein [Populus trichocarpa] gi|222840941|gb|EEE78488.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 77/83 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS+IYEEK
Sbjct: 40  SDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSSIYEEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFG+ IP+
Sbjct: 100 KDEDGFLYVTYSGENTFGTQIPL 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540577|ref|XP_003538764.1| PREDICTED: autophagy-related protein 8f-like [Glycine max]

 Score =  147 bits (370), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 75/83 (90%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFG  I +
Sbjct: 100 KDEDGFLYVTYSGENTFGDLISI 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497149|ref|XP_003517425.1| PREDICTED: autophagy-related protein 8f-like [Glycine max]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 75/83 (90%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLYVTYSGENTFG  I +
Sbjct: 100 KDEDGFLYVTYSGENTFGDLISI 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21615419|emb|CAD33929.1| microtubule associated protein [Cicer arietinum]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHI 100
           KDEDGFLYVTYSGENTFG  I
Sbjct: 100 KDEDGFLYVTYSGENTFGDLI 120

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476885|ref|XP_003608728.1| Autophagy-related protein 8f [Medicago truncatula] gi|355509783|gb|AES90925.1| Autophagy-related protein 8f [Medicago truncatula] gi|388516669|gb|AFK46396.1| unknown [Medicago truncatula]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGSHI 100
           KDEDGFLYVTYSGENTFG  I
Sbjct: 100 KDEDGFLYVTYSGENTFGDLI 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806567|ref|NP_001241265.1| uncharacterized protein LOC100818620 [Glycine max] gi|255638500|gb|ACU19559.1| unknown [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/79 (87%), Positives = 73/79 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGS 98
           KDEDGFLYVTYSGENTFG 
Sbjct: 100 KDEDGFLYVTYSGENTFGD 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516607|gb|AFK46365.1| unknown [Lotus japonicus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/79 (87%), Positives = 73/79 (92%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIY+EK
Sbjct: 40  SDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEK 99

Query: 80  KDEDGFLYVTYSGENTFGS 98
           KDEDGFLYVTYSGENTFG 
Sbjct: 100 KDEDGFLYVTYSGENTFGD 118

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2130759	121	ATG8F "AT4G16520" [Arabidopsis	0.803	0.677	0.804	1.6e-31
TAIR|locus:2055537	122	ATG8E "AUTOPHAGY 8E" [Arabidop	0.774	0.647	0.797	4.2e-31
TAIR|locus:2101816	121	ATG8G "AUTOPHAGY 8G" [Arabidop	0.852	0.719	0.761	4.2e-31
TAIR|locus:2120618	137	APG8A "AT4G21980" [Arabidopsis	0.774	0.576	0.784	6.2e-30
TAIR|locus:2058939	164	ATG8D [Arabidopsis thaliana (t	0.764	0.475	0.794	1.3e-29
TAIR|locus:2125791	122	ATG8B "AT4G04620" [Arabidopsis	0.764	0.639	0.769	2.1e-29
ASPGD|ASPL0000029812	118	atgH [Emericella nidulans (tax	0.764	0.661	0.794	5.6e-29
CGD|CAF0006954	135	AUT7 [Candida albicans (taxid:	0.813	0.614	0.710	1.9e-28
UNIPROTKB|P0C075	135	ATG8 "Autophagy-related protei	0.813	0.614	0.710	1.9e-28
POMBASE|SPBP8B7.24c	121	atg8 "autophagy associated pro	0.803	0.677	0.719	3.1e-28

TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +P  +  +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEK
Sbjct:    40 SDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEK 99

Query:    80 KDEDGFLYVTYSGENTFGSHIP 101
             KD+DGFLYVTYSGENTFG   P
Sbjct:   100 KDDDGFLYVTYSGENTFGFGSP 121

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/79 (79%), Positives = 73/79 (92%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +P  +  +YLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE+K
Sbjct:    41 SEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDK 100

Query:    80 KDEDGFLYVTYSGENTFGS 98
             KDEDGFLY+TYSGENTFG+
Sbjct:   101 KDEDGFLYITYSGENTFGA 119

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2101816 ATG8G "AUTOPHAGY 8G" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/88 (76%), Positives = 77/88 (87%)

Query:    11 LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 70
             +I+  + K S +P  +  +YLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA
Sbjct:    32 VIVEKSEK-SDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGA 90

Query:    71 IMSAIYEEKKDEDGFLYVTYSGENTFGS 98
             +MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:    91 MMSTIYDENKEEDGFLYVTYSGENTFGS 118

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 62/79 (78%), Positives = 70/79 (88%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +P+ +  +YLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE 
Sbjct:    55 SDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEH 114

Query:    80 KDEDGFLYVTYSGENTFGS 98
             KDEDGFLY+TYSGENTFGS
Sbjct:   115 KDEDGFLYMTYSGENTFGS 133

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 62/78 (79%), Positives = 70/78 (89%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +P+ +  +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYEE 
Sbjct:    84 SDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEH 143

Query:    80 KDEDGFLYVTYSGENTFG 97
             KDEDGFLY++YSGENTFG
Sbjct:   144 KDEDGFLYMSYSGENTFG 161

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 60/78 (76%), Positives = 69/78 (88%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +P+ +  +YLVPADLT+GQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYEE 
Sbjct:    40 SDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEH 99

Query:    80 KDEDGFLYVTYSGENTFG 97
             KDEDGFLY+TYSGENTFG
Sbjct:   100 KDEDGFLYMTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 62/78 (79%), Positives = 68/78 (87%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +   +  +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYEE 
Sbjct:    39 SDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEH 98

Query:    80 KDEDGFLYVTYSGENTFG 97
             KDEDGFLY+TYSGENTFG
Sbjct:    99 KDEDGFLYITYSGENTFG 116

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0031386 "protein tag" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

CGD|CAF0006954 AUT7 [Candida albicans (taxid:5476)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +PE +  +YLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++LPPT A++S IYEE 
Sbjct:    39 SDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEH 98

Query:    80 KDEDGFLYVTYSGENTFGSHIPV 102
             KDEDGFLYV YSGENTFG  + +
Sbjct:    99 KDEDGFLYVLYSGENTFGEKLAI 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

UNIPROTKB|P0C075 ATG8 "Autophagy-related protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +PE +  +YLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++LPPT A++S IYEE 
Sbjct:    39 SDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEH 98

Query:    80 KDEDGFLYVTYSGENTFGSHIPV 102
             KDEDGFLYV YSGENTFG  + +
Sbjct:    99 KDEDGFLYVLYSGENTFGEKLAI 121

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBP8B7.24c atg8 "autophagy associated protein Atg8" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 59/82 (71%), Positives = 68/82 (82%)

Query:    20 SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
             S +   +  +YLVP+DLTVGQFVYVIRKRIKLS EKAIFIF+D +LPPT A+MS IYEE 
Sbjct:    39 SDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEH 98

Query:    80 KDEDGFLYVTYSGENTFGSHIP 101
             K EDGFLY+TYSGENTFG+  P
Sbjct:    99 KSEDGFLYITYSGENTFGTVFP 120

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IC

GO:0032258 "CVT pathway" evidence=ISO

GO:0033110 "CVT vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7E8H4	ATG8_SCLS1	No assigned EC number	0.7407	0.7941	0.6585	N/A	no
Q0V3Y9	ATG8_PHANO	No assigned EC number	0.7777	0.7941	0.6806	N/A	no
Q1E4K5	ATG8_COCIM	No assigned EC number	0.7721	0.7745	0.6752	N/A	no
Q6BT31	ATG8_DEBHA	No assigned EC number	0.7215	0.7745	0.5808	yes	no
Q2XPP5	ATG8A_ORYSI	No assigned EC number	0.7721	0.7745	0.6638	N/A	no
Q4P2U6	ATG8_USTMA	No assigned EC number	0.7594	0.7745	0.6694	N/A	no
Q8J282	ATG8_PODAS	No assigned EC number	0.7948	0.7647	0.6446	yes	no
O94272	ATG8_SCHPO	No assigned EC number	0.7195	0.8039	0.6776	yes	no
A6RPU4	ATG8_BOTFB	No assigned EC number	0.7407	0.7941	0.6585	N/A	no
P0CO55	ATG8_CRYNB	No assigned EC number	0.7341	0.7745	0.6269	N/A	no
P0CO54	ATG8_CRYNJ	No assigned EC number	0.7341	0.7745	0.6269	yes	no
Q755X2	ATG8_ASHGO	No assigned EC number	0.6521	0.9019	0.7666	yes	no
Q8NJJ4	ATG8_PICPA	No assigned EC number	0.6210	0.9313	0.76	yes	no
A1D3N4	ATG8_NEOFI	No assigned EC number	0.7848	0.7745	0.6694	N/A	no
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.7848	0.7745	0.6694	yes	no
A2YS06	ATG8C_ORYSI	No assigned EC number	0.8076	0.7647	0.65	N/A	no
Q5QFG1	ATG8_PICAN	No assigned EC number	0.7088	0.7745	0.632	N/A	no
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.8076	0.7647	0.65	yes	no
A1CQS1	ATG8_ASPCL	No assigned EC number	0.7848	0.7745	0.6694	N/A	no
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.7948	0.7647	0.6554	yes	no
Q5B2U9	ATG8_EMENI	No assigned EC number	0.7848	0.7745	0.6694	yes	no
A7TDU7	ATG8_VANPO	No assigned EC number	0.7468	0.7745	0.6694	N/A	no
Q8VYK7	ATG8F_ARATH	No assigned EC number	0.8048	0.8039	0.6776	yes	no
Q8H715	ATG8_PHYIN	No assigned EC number	0.7721	0.7745	0.6810	N/A	no
Q6FXR8	ATG8_CANGA	No assigned EC number	0.7307	0.7647	0.6610	yes	no
A2QPN1	ATG8_ASPNC	No assigned EC number	0.7848	0.7745	0.6694	yes	no
Q6CMF8	ATG8_KLULA	No assigned EC number	0.5937	0.9411	0.7741	yes	no
A2XXR7	ATG8B_ORYSI	No assigned EC number	0.7948	0.7647	0.6554	N/A	no
Q8WZY7	ATG8_NEUCR	No assigned EC number	0.7848	0.7745	0.6528	N/A	no
P0C075	ATG8_CANAL	No assigned EC number	0.7108	0.8137	0.6148	N/A	no
A3GFU8	ATG8_PICST	No assigned EC number	0.7108	0.8137	0.5971	yes	no
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.7848	0.7745	0.6694	yes	no
P38182	ATG8_YEAST	No assigned EC number	0.6777	0.8823	0.7692	yes	no
Q2GVL1	ATG8_CHAGB	No assigned EC number	0.7721	0.7745	0.6528	N/A	no
Q6C794	ATG8_YARLI	No assigned EC number	0.7974	0.7745	0.6370	yes	no
Q0C804	ATG8_ASPTN	No assigned EC number	0.7848	0.7745	0.6694	N/A	no
A4LA70	ATG8_COLLN	No assigned EC number	0.7948	0.7647	0.6446	N/A	no
Q86CR8	ATG8_DICDI	No assigned EC number	0.6463	0.7941	0.6639	yes	no
A7KAL9	ATG8_PENCW	No assigned EC number	0.7848	0.7745	0.6694	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1270069 SubName- Full=Putative uncharacterized protein; (123 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	2e-44
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	7e-42
PTZ00380	121	PTZ00380, PTZ00380, microtubule-associated protein	5e-05

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  139 bits (352), Expect = 2e-44
 Identities = 54/78 (69%), Positives = 65/78 (83%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S LP+ +  +YLVP+DLTVGQFVY+IRKRI+L  EKA+F+FV+N LPPT A MS +YEE 
Sbjct: 35  SDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEH 94

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+TYS E TFG
Sbjct: 95  KDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  132 bits (334), Expect = 7e-42
 Identities = 57/78 (73%), Positives = 68/78 (87%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S LP+ +  +YLVPADLTVGQF+Y+IRKRI+L  EKAIF+FV+N LPPT A MSA+YEE+
Sbjct: 27  SDLPDIDKKKYLVPADLTVGQFIYIIRKRIQLRPEKAIFLFVNNTLPPTSATMSALYEEE 86

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLY+ YSGENTFG
Sbjct: 87  KDEDGFLYMVYSGENTFG 104

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 32  VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 91
           +P D TV +    +R+ +  SA+K + + ++   P   A +  I +  K +DGFLYV+  
Sbjct: 47  LPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105

Query: 92  GENTFG 97
            E   G
Sbjct: 106 TEQAMG 111

Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG1654	116	consensus Microtubule-associated anchor protein in	100.0
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.95
KOG3439	116	consensus Protein conjugation factor involved in a	99.94
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	95.8
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	94.82
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.47
KOG2660	331	consensus Locus-specific chromosome binding protei	92.39
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	92.37
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	91.37
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	89.9
PF08154	65	NLE: NLE (NUC135) domain; InterPro: IPR012972 This	89.01
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	88.77
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	88.73
PF13019	162	Telomere_Sde2: Telomere stability and silencing	86.98
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	86.92
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	83.83
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	81.25

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=100.00  E-value=2.7e-40  Score=227.19  Aligned_cols=88  Identities=63%  Similarity=1.026  Sum_probs=85.2

Q ss_pred             eeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEE
Q 034167            8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLY   87 (102)
Q Consensus         8 ~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLy   87 (102)
                      ||||+| ++. ++++|+|||+|||||+++||+||+.+|||||+|++++++|+||||.+|+.+++|++||+++||+|||||
T Consensus        29 iPVIvE-k~~-~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~~Ye~~kdeDgFLY  106 (116)
T KOG1654|consen   29 IPVIVE-KAG-KSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSALYEEEKDEDGFLY  106 (116)
T ss_pred             CcEEEE-ecc-cccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHHHHHhhcccCcEEE
Confidence            799999 444 899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             EEecCCcccC
Q 034167           88 VTYSGENTFG   97 (102)
Q Consensus        88 l~Ys~~~afG   97 (102)
                      |+||+|++||
T Consensus       107 m~Ys~e~tfG  116 (116)
T KOG1654|consen  107 MTYSGENTFG  116 (116)
T ss_pred             EEeccccccC
Confidence            9999999999

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=6.8e-40  Score=223.52  Aligned_cols=89  Identities=55%  Similarity=1.000  Sum_probs=78.2

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -|||||||+..  +++|+|||+|||||+++||+||+.+||+||+++++++|||||||++|+++++||+||++|||+||||
T Consensus        16 ~IPVIvEr~~~--s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFL   93 (104)
T PF02991_consen   16 KIPVIVERYPK--SKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFL   93 (104)
T ss_dssp             EEEEEEEE-TT--SSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSE
T ss_pred             ccEEEEEEccC--CChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeE
Confidence            38999999776  4599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+|++||
T Consensus        94 Y~~Ys~e~tFG  104 (104)
T PF02991_consen   94 YMTYSSEETFG  104 (104)
T ss_dssp             EEEEESSSSBC
T ss_pred             EEEeccccccC
Confidence            99999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=2e-39  Score=223.60  Aligned_cols=89  Identities=62%  Similarity=1.061  Sum_probs=86.0

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||+|+..  ++++|+|+|+||+||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|||+||||
T Consensus        24 ~iPVIvE~~~--~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfL  101 (112)
T cd01611          24 RIPVIVERYP--KSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFL  101 (112)
T ss_pred             ceEEEEEEcC--CCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEE
Confidence            3899999944  58999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+++|||
T Consensus       102 yl~Ys~~~tfG  112 (112)
T cd01611         102 YMTYSSEETFG  112 (112)
T ss_pred             EEEEeccccCC
Confidence            99999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=1.5e-36  Score=201.12  Aligned_cols=85  Identities=22%  Similarity=0.471  Sum_probs=82.4

Q ss_pred             EEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCeEEEE
Q 034167           11 LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLYVT   89 (102)
Q Consensus        11 Ii~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGfLyl~   89 (102)
                      |.+|+++ .|++|+|+|+||+||+++|+++|+.+|||||++++++|+||||||+ +|++|++||+||++| |+||||||+
T Consensus         2 v~i~~~~-~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~   79 (87)
T cd01612           2 VTIRFKP-IGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVS   79 (87)
T ss_pred             eEEEEEE-CCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEE
Confidence            6789999 8999999999999999999999999999999999999999999996 899999999999999 799999999


Q ss_pred             ecCCcccC
Q 034167           90 YSGENTFG   97 (102)
Q Consensus        90 Ys~~~afG   97 (102)
                      ||.++|||
T Consensus        80 Ys~~~afG   87 (87)
T cd01612          80 YCKTVAFG   87 (87)
T ss_pred             EeCccccC
Confidence            99999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=6.6e-36  Score=208.63  Aligned_cols=86  Identities=23%  Similarity=0.434  Sum_probs=80.2

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEE-EecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCe
Q 034167            7 TTRYLILSYTNKVSSLPECENYRY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGF   85 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~Kf-lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGf   85 (102)
                      -||||||+...  ++    +|+|| |||+|+||+||+.+||+||+|++++ +||||||++|+++++||+||++|||+|||
T Consensus        27 rIPVIvEk~~~--s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe~~KDeDGF   99 (121)
T PTZ00380         27 HVAVVVEAAEK--AG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKRDDGF   99 (121)
T ss_pred             ccEEEEeecCC--CC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHHHhcCCCCe
Confidence            38999999443  44    89999 6999999999999999999999999 99999999999999999999999999999


Q ss_pred             EEEEecCCcccCCC
Q 034167           86 LYVTYSGENTFGSH   99 (102)
Q Consensus        86 Lyl~Ys~~~afG~~   99 (102)
                      |||+||+|++||.+
T Consensus       100 LYi~Ys~e~tFG~~  113 (121)
T PTZ00380        100 LYVSVRTEQAMGAF  113 (121)
T ss_pred             EEEEEccccccccc
Confidence            99999999999964

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.95  E-value=2.3e-28  Score=162.38  Aligned_cols=85  Identities=21%  Similarity=0.495  Sum_probs=64.9

Q ss_pred             EEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeEEEE
Q 034167           11 LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLYVT   89 (102)
Q Consensus        11 Ii~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfLyl~   89 (102)
                      |.+|+++ .|++|.|+++||.|.++.|++.++.+|||+|+++++++||+|||| +.|++|+++|+||+||+ .||.|.++
T Consensus         2 V~v~fk~-iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~   79 (87)
T PF04110_consen    2 VTVRFKA-IGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVS   79 (87)
T ss_dssp             EEEEEEE-ETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEE
T ss_pred             EEEEEEe-cCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEE
Confidence            6789999 899999999999999999999999999999999999999999998 69999999999999998 89999999


Q ss_pred             ecCCcccC
Q 034167           90 YSGENTFG   97 (102)
Q Consensus        90 Ys~~~afG   97 (102)
                      ||.++|||
T Consensus        80 Ys~t~A~G   87 (87)
T PF04110_consen   80 YSKTPAWG   87 (87)
T ss_dssp             EESSS---
T ss_pred             EecccccC
Confidence            99999999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.6e-27  Score=161.00  Aligned_cols=88  Identities=22%  Similarity=0.442  Sum_probs=84.7

Q ss_pred             eeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeE
Q 034167            8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         8 ~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      +.-|.+|+++ .|++|.|+++||.|+.+.||+.++.+|||+|+|+++++||+|||| ++|++|+.+|+||+||+ .||.|
T Consensus        28 ~~kV~i~l~a-iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~L  105 (116)
T KOG3439|consen   28 IRKVQIRLRA-IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKL  105 (116)
T ss_pred             cceEEEEEec-cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEE
Confidence            4678899999 899999999999999999999999999999999999999999998 58999999999999998 79999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      .++||..+|||
T Consensus       106 vl~Yc~s~A~G  116 (116)
T KOG3439|consen  106 VLNYCISVAWG  116 (116)
T ss_pred             EEEEeeecccC
Confidence            99999999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.80  E-value=0.017  Score=42.93  Aligned_cols=56  Identities=16%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             cchHhHHHHHHHHh--cCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167           36 LTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS   91 (102)
Q Consensus        36 ~tv~~f~~~lRk~L--~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys   91 (102)
                      .|+++++..+=..+  .-+......+++++-.++.|+.+..||++++-.||||||.-+
T Consensus       138 ~TL~d~L~~~lp~~f~s~~~~~~~~~iihGI~ipldtpl~~l~~~l~~~D~FLhivv~  195 (197)
T PF04106_consen  138 QTLGDALSELLPELFPSSDEPELARVIIHGIEIPLDTPLQWLYENLSYPDGFLHIVVR  195 (197)
T ss_dssp             -BTGGGHHHHHTTT--T------EEEEETTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred             CcHHHHHHHhChhhcccccCccccEEEEeCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence            46666554432211  112344557788887788899999999999999999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=94.82  E-value=0.38  Score=32.25  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             EEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHh-cCCCcceEEEEEcCcCCCCCchHHHHHhhc
Q 034167           10 YLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSAIYEEK   79 (102)
Q Consensus        10 vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L-~l~~~~slFlyVnn~lp~~~~~m~~lY~~~   79 (102)
                      .|++||.+   .+|+|.=. +--|.+.|+.++...||.++ .-.++..|=|.-++.+.+.++.++..-...
T Consensus         2 ~l~IRFs~---sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~   68 (97)
T PF10302_consen    2 YLTIRFSD---SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP   68 (97)
T ss_pred             eEEEEECC---CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence            57899998   57775411 01448899999999999999 445567775555666555555554444433

They contain a characteristic GFDRL sequence motif.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.47  E-value=0.14  Score=31.22  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      +..+|.|..+.+++.++...+++.++++.+++-|+.++....+++|++++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            57788999999999999999999999986677777777655666677765

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=92.39  E-value=0.27  Score=39.78  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             CCCCCCcceeEEE-ecCCcchHhHHHHHHHHhc-CCCcceEEEEEcCcCCCCCchHHHHHhhccC--CCCeEEEEecCCc
Q 034167           19 VSSLPECENYRYL-VPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD--EDGFLYVTYSGEN   94 (102)
Q Consensus        19 ~~~~P~L~k~Kfl-Vp~~~tv~~f~~~lRk~L~-l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd--~DGfLyl~Ys~~~   94 (102)
                      .+.++.|. ++|+ ++...|+.++..++|+++. ++....+=+++|+-+..-+.||.++.-.+..  .||-|-+.|...+
T Consensus       157 ~~~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p  235 (331)
T KOG2660|consen  157 KDTLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP  235 (331)
T ss_pred             cccccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence            34566666 6787 8999999999999999998 7766667777887788889999988877766  4999999998443

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=92.37  E-value=0.55  Score=30.83  Aligned_cols=55  Identities=20%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             EecCCcchHhHHHHHHHHhcCCCcceEEEEEc----C-cCCCCCchHHHHHhhccCCCCeEEE
Q 034167           31 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD----N-VLPPTGAIMSAIYEEKKDEDGFLYV   88 (102)
Q Consensus        31 lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn----n-~lp~~~~~m~~lY~~~kd~DGfLyl   88 (102)
                      -||.+.+++|+..-|++||++++ +.+.|.--    + ..|-.|+.|.....+=+  ||-|=+
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTL   75 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTL   75 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEE
Confidence            38999999999999999999984 45666543    1 24557888999888876  565533

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=91.37  E-value=2.1  Score=34.00  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             EEEecCCcchHhHHHHHHHHh--------------cCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           29 RYLVPADLTVGQFVYVIRKRI--------------KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        29 KflVp~~~tv~~f~~~lRk~L--------------~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      |.-.+.-+.|..+..++-.|+              .+.+++.|=|+||+.+.+++++|+.+-..+=-..|-|.+.|..
T Consensus       251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence            888899999999999999999              4578899999999998888999999988833367899999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=89.90  E-value=0.47  Score=30.63  Aligned_cols=70  Identities=19%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             EEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC--c--CC-CCCchHHHHHhhccCCCC
Q 034167           10 YLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN--V--LP-PTGAIMSAIYEEKKDEDG   84 (102)
Q Consensus        10 vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn--~--lp-~~~~~m~~lY~~~kd~DG   84 (102)
                      -+|+|++.+.|      -.+.-++.+.|++++..-|.+.++++.. +..||.|.  .  +. +.+.+++++==+|+|   
T Consensus         4 ~milRvrS~dG------~~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd---   73 (80)
T PF11543_consen    4 SMILRVRSKDG------MKRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRNNKEELKSSDSKTLSSLGLKHGD---   73 (80)
T ss_dssp             --EEEEE-SSE------EEEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGGGGGCSSS-TT-CCCCT---TT----
T ss_pred             cEEEEEECCCC------CEEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCCCCcccccCCcCCHHHcCCCCcc---
Confidence            46889888653      3445689999999999999999998855 45566653  2  32 456677777666653   


Q ss_pred             eEEEE
Q 034167           85 FLYVT   89 (102)
Q Consensus        85 fLyl~   89 (102)
                      .||+.
T Consensus        74 mlyL~   78 (80)
T PF11543_consen   74 MLYLK   78 (80)
T ss_dssp             EEE--
T ss_pred             EEEEe
Confidence            66653

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO)

Probab=89.01  E-value=3  Score=25.64  Aligned_cols=53  Identities=8%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             EEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHh-cCCCcceEEEEEcCc
Q 034167           11 LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNV   64 (102)
Q Consensus        11 Ii~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L-~l~~~~slFlyVnn~   64 (102)
                      |.++|..+.++ .......+.||.+.|..++...+.+-| ...+....=+++|+.
T Consensus         2 v~v~F~t~~~~-~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~   55 (65)
T PF08154_consen    2 VQVQFVTEDGE-YEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGE   55 (65)
T ss_pred             EEEEEEcCCCC-ccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCE
Confidence            45677776664 456668899999999999999999998 566566666677774

It is found in the microtubule-associated protein Q12024 from SWISSPROT [].

>smart00213 UBQ Ubiquitin homologues

Probab=88.77  E-value=1.9  Score=24.81  Aligned_cols=47  Identities=11%  Similarity=0.057  Sum_probs=34.3

Q ss_pred             eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167           27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA   74 (102)
Q Consensus        27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~   74 (102)
                      ...+-|+.+.|++++...|.++.+++++. .=|+.++.....+.++++
T Consensus        11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       11 TITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence            44567999999999999999999998753 334456655555566654

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd00196 UBQ Ubiquitin-like proteins

Probab=88.73  E-value=2.4  Score=22.54  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc
Q 034167           24 ECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV   64 (102)
Q Consensus        24 ~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~   64 (102)
                      .-...++.++.+.|++++...+.++.+.. .+...|++|..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~   45 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGK   45 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCe
Confidence            34667788899999999999999999854 44556677764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=86.98  E-value=5.5  Score=29.29  Aligned_cols=63  Identities=16%  Similarity=0.392  Sum_probs=48.5

Q ss_pred             eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEc-C-cC-CCCCchHHHHHhhccCCCCeEEEEe
Q 034167           27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N-VL-PPTGAIMSAIYEEKKDEDGFLYVTY   90 (102)
Q Consensus        27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn-n-~l-p~~~~~m~~lY~~~kd~DGfLyl~Y   90 (102)
                      ..-+-+|.+.|++++...|..++.......++|+++ | .+ +..+..+.++.....+. +|+.+..
T Consensus        16 tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~~l~l   81 (162)
T PF13019_consen   16 TLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFITLRL   81 (162)
T ss_pred             eEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-CceEEEE
Confidence            344569999999999999999999998877888886 4 34 56777888888877643 5765554

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=86.92  E-value=3.5  Score=26.82  Aligned_cols=61  Identities=13%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC
Q 034167           21 SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD   81 (102)
Q Consensus        21 ~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd   81 (102)
                      +=|.+--+.+-||++..+..++.+--+..+.++..+.-+--++.--.+.++-|+++-+|+.
T Consensus        11 sDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen   11 SDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             TSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             cCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            4466677888899999999999999999999998884332223456788999999999974

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=83.83  E-value=4.6  Score=25.85  Aligned_cols=49  Identities=12%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      +...|.|..+.+++.+...+.++.++++++--|+| ++.....+.|+.++
T Consensus        22 ~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G~~L~~~~T~~~l   70 (87)
T cd01763          22 NEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DGQRIRDNQTPDDL   70 (87)
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CCeECCCCCCHHHc
Confidence            55678899999999999999999999987665666 55544556677776

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=81.25  E-value=2.7  Score=25.06  Aligned_cols=47  Identities=15%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      ..+-|+.+.|++++...|.++.++++++- -|+.++.....+.+++++
T Consensus         8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~-~L~~~G~~L~d~~tL~~~   54 (69)
T PF00240_consen    8 FTLEVDPDDTVADLKQKIAEETGIPPEQQ-RLIYNGKELDDDKTLSDY   54 (69)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSTGGGE-EEEETTEEESTTSBTGGG
T ss_pred             EEEEECCCCCHHHhhhhcccccccccccc-eeeeeeecccCcCcHHHc
Confidence            44569999999999999999999887654 445577655778888765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		6e-31
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		6e-31
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		6e-31
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		6e-31
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		6e-31
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		7e-31
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		1e-23
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		2e-21
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		5e-21
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		1e-20
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		2e-20
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		2e-20
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		2e-19
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		6e-19
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		3e-15
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		1e-13
2zjd_A	130	Crystal Structure Of Lc3-P62 Complex Length = 130		4e-12
1v49_A	120	Solution Structure Of Microtubule-Associated Protei		6e-12
2z0e_B	129	The Crystal Structure Of Human Atg4b- Lc3(1-124) Co		1e-11
2k6q_A	121	Lc3 P62 Complex Structure Length = 121		1e-11
1ugm_A	125	Crystal Structure Of Lc3 Length = 125		2e-11
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		3e-11

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 28  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 87
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 88  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 30  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 89
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 90  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 27  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 86
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 87  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 30  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 89
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 90  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 29  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 88
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 89  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 72/90 (80%)
Query: 8   TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 67
            R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPP
Sbjct: 29  NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPP 88
Query: 68  TGAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
           T A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 89  TAALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 62/78 (79%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++
Sbjct: 39  SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98
Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLYV YSGENTFG
Sbjct: 99  KDEDGFLYVAYSGENTFG 116

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 59/79 (74%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + L + +  +YLVP+DLTVGQF ++IRKRI L  E A+F FV+NV+PPT A M ++Y+E 
Sbjct: 47  ARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 106
Query: 80  KDEDGFLYVTYSGENTFGS 98
            DED FLY+ +S EN +G+
Sbjct: 107 HDEDFFLYIAFSDENVYGN 125

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 15  YTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 74
           Y + +  L  C   ++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+ A M+ 
Sbjct: 40  YNSDIGELDRC---KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96
Query: 75  IYEEKKDEDGFLYVTYSGENTFG 97
           IY + KDEDGFLY+ YSGE TFG
Sbjct: 97  IYSKYKDEDGFLYMKYSGEATFG 119

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 56/74 (75%)
Query: 24  ECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED 83
           + +  +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E  +ED
Sbjct: 45  DLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEED 104
Query: 84  GFLYVTYSGENTFG 97
            FLY+ YS E+ +G
Sbjct: 105 FFLYIAYSDESVYG 118

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + + + +  +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E 
Sbjct: 39  ARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98
Query: 80  KDEDGFLYVTYSGENTFG 97
            +ED FLY+ YS E+ +G
Sbjct: 99  HEEDFFLYIAYSDESVYG 116

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 58/78 (74%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + + + +  +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E 
Sbjct: 41  ARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 100
Query: 80  KDEDGFLYVTYSGENTFG 97
            +ED FLY+ YS E+ +G
Sbjct: 101 HEEDFFLYIAYSDESVYG 118

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + +P+ +  +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+ 
Sbjct: 43  ARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 102
Query: 80  KDEDGFLYVTYSGEN 94
            +ED FLYV YS E+
Sbjct: 103 HEEDYFLYVAYSDES 117

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + +P+ +  +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+ 
Sbjct: 38  ARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 97
Query: 80  KDEDGFLYVTYS 91
            +ED FLYV YS
Sbjct: 98  HEEDYFLYVAYS 109

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 9/87 (10%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSA---------EKAIFIFVDNVLPPTGA 70
           S+LP  E  ++LVP ++ VG+F +++ + I  SA         E+ I++FV+N++P TG 
Sbjct: 42  SNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGL 101
Query: 71  IMSAIYEEKKDEDGFLYVTYSGENTFG 97
           +M  +YE  KDEDG+LY+ YS E++ G
Sbjct: 102 LMQDLYEMYKDEDGYLYMEYSSESSLG 128

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 22  LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKK 80
           LP  +  ++LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY + K
Sbjct: 52  LPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYK 111
Query: 81  DEDGFLYVTYSGENTFG 97
           DEDGF+Y+TY+ + TFG
Sbjct: 112 DEDGFVYMTYASQETFG 128

>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 21  SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
            LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +
Sbjct: 48  QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80  KDEDGFLYVTYSGENTFGSHIPV 102
           KDEDGFLY+ Y+ + TFG  + V
Sbjct: 108 KDEDGFLYMVYASQETFGMKLSV 130

>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEE 78
             LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE 
Sbjct: 42  KQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYES 101
Query: 79  KKDEDGFLYVTYSGENTFG 97
           +KDEDGFLY+ Y+ + TFG
Sbjct: 102 EKDEDGFLYMVYASQETFG 120

>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21  SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
            LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +
Sbjct: 48  QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80  KDEDGFLYVTYSGENTFGS 98
           +DEDGFLY+ Y+ + TFG+
Sbjct: 108 RDEDGFLYMVYASQETFGT 126

>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 21  SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
            LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +
Sbjct: 44  QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 103
Query: 80  KDEDGFLYVTYSGENTFG 97
           +DEDGFLY+ Y+ + TFG
Sbjct: 104 RDEDGFLYMVYASQETFG 121

>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 21  SLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEK 79
            LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +YE +
Sbjct: 48  QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESE 107
Query: 80  KDEDGFLYVTYSGENTFG 97
           +DEDGFLY+ Y+ + TFG
Sbjct: 108 RDEDGFLYMVYASQETFG 125

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEE 78
             LP  +  ++LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IYE+
Sbjct: 43  KQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQ 102
Query: 79  KKDEDGFLYVTYSGENTFG 97
           +KDEDGFLY+ Y+ + TFG
Sbjct: 103 EKDEDGFLYMVYASQETFG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3rui_B	118	Autophagy-related protein 8; autophagosome formati	5e-35
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	2e-33
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	4e-33
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	3e-32
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	4e-31
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	3e-29

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score =  115 bits (288), Expect = 5e-35
 Identities = 61/89 (68%), Positives = 72/89 (80%)

Query: 9   RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT 68
           R  ++    + S +PE +  +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT
Sbjct: 30  RIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 89

Query: 69  GAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
            A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 90  AALMSAIYQEHKDKDGFLYVTYSGENTFG 118

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score =  111 bits (278), Expect = 2e-33
 Identities = 43/92 (46%), Positives = 62/92 (67%)

Query: 7   TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLP 66
             R  ++      + L + +  +YLVP+DLTVGQF ++IRKRI L  E A+F FV+NV+P
Sbjct: 34  PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIP 93

Query: 67  PTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 98
           PT A M ++Y+E  DED FLY+ +S EN +G+
Sbjct: 94  PTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score =  110 bits (275), Expect = 4e-33
 Identities = 44/89 (49%), Positives = 63/89 (70%)

Query: 9   RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT 68
           R  I+      S + E +  ++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+
Sbjct: 31  RLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPS 90

Query: 69  GAIMSAIYEEKKDEDGFLYVTYSGENTFG 97
            A M+ IY + KDEDGFLY+ YSGE TFG
Sbjct: 91  SAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score =  108 bits (270), Expect = 3e-32
 Identities = 45/78 (57%), Positives = 62/78 (79%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++
Sbjct: 39  SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLYV YSGENTFG
Sbjct: 99  KDEDGFLYVAYSGENTFG 116

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score =  105 bits (263), Expect = 4e-31
 Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 11  LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTG 69
           +I+        LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +    
Sbjct: 38  VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVS 97

Query: 70  AIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 102
             +S +YE +KDEDGFLY+ Y+ + TFG  + V
Sbjct: 98  TPISEVYESEKDEDGFLYMVYASQETFGMKLSV 130

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score =  100 bits (249), Expect = 3e-29
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 9   RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT 68
           R  ++      + +P+ +  +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT
Sbjct: 27  RVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPT 86

Query: 69  GAIMSAIYEEKKDEDGFLYVTYS 91
            A M  +YE+  +ED FLYV YS
Sbjct: 87  SATMGQLYEDNHEEDYFLYVAYS 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	94.09
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	93.42
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	93.1
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	91.74
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	88.94
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	88.11
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	87.39
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	86.62
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	84.89
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	83.36
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	83.14
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	82.72
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	82.64
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	82.13
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	81.48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	81.25
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	80.54
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	80.52
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	80.18

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=8.8e-41  Score=233.33  Aligned_cols=90  Identities=47%  Similarity=0.859  Sum_probs=85.1

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -|||||||+.  ++++|+|+|+|||||+++||+||+.+||+||+|++++||||||||++|++|++||+||++|||+||||
T Consensus        36 rIPVIvEr~~--~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfL  113 (125)
T 3m95_A           36 RVPVIVEKAP--KARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFL  113 (125)
T ss_dssp             EEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred             eEEEEEEecC--CCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence            3899999965  47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCC
Q 034167           87 YVTYSGENTFGS   98 (102)
Q Consensus        87 yl~Ys~~~afG~   98 (102)
                      ||+||+|+|||+
T Consensus       114 Y~~Ys~e~tfG~  125 (125)
T 3m95_A          114 YIAFSDENVYGN  125 (125)
T ss_dssp             EEEEESSSCC--
T ss_pred             EEEecCccccCC
Confidence            999999999994

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=1.4e-40  Score=230.26  Aligned_cols=89  Identities=67%  Similarity=1.066  Sum_probs=86.1

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -|||||||+.  ++++|+|+|+|||||+++||+||+.+||+||+|+++++|||||||++|++|++||+||++|||+||||
T Consensus        30 riPVIvE~~~--~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfL  107 (118)
T 3rui_B           30 RIPVICEKAE--KSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFL  107 (118)
T ss_dssp             EEEEEEEECT--TCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred             ceEEEEEeCC--CCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence            3899999974  57999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+|+|||
T Consensus       108 yv~Ys~~~~fG  118 (118)
T 3rui_B          108 YVTYSGENTFG  118 (118)
T ss_dssp             EEEEEECCCBC
T ss_pred             EEEEeccccCC
Confidence            99999999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=1.6e-40  Score=230.22  Aligned_cols=89  Identities=47%  Similarity=0.820  Sum_probs=84.1

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||+||+.  ++++|+|+|+|||||+++||+||+.+||+||+|+++++|||||||++|++|++||+||++|||+||||
T Consensus        31 rIPVIvEr~~--~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL  108 (119)
T 3h9d_A           31 RLPIICEKVY--NSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL  108 (119)
T ss_dssp             EEEEEEEECT--TSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred             eEEEEEEecC--CCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence            3899999965  47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+|+|||
T Consensus       109 yv~Ys~e~~fG  119 (119)
T 3h9d_A          109 YMKYSGEATFG  119 (119)
T ss_dssp             EEEEECC-CC-
T ss_pred             EEEEecccccC
Confidence            99999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=2.3e-39  Score=227.32  Aligned_cols=94  Identities=32%  Similarity=0.687  Sum_probs=87.2

Q ss_pred             EeeEEEEEeecCCCC-CCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEE-EEcCcCCCCCchHHHHHhhccCCCC
Q 034167            7 TTRYLILSYTNKVSS-LPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSAIYEEKKDEDG   84 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~-~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFl-yVnn~lp~~~~~m~~lY~~~kd~DG   84 (102)
                      -||||+|++..  ++ +|.|+|+||+||+++||+||+.+||+||+|+++++||| ||||++|++|++||+||++|||+||
T Consensus        35 kIPVIvEk~~~--s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG  112 (130)
T 2zjd_A           35 KIPVIIERYKG--EKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG  112 (130)
T ss_dssp             EEEEEEEECTT--CCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred             ceEEEEEEcCC--CCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence            48999999765  55 99999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             eEEEEecCCcccCCCCCC
Q 034167           85 FLYVTYSGENTFGSHIPV  102 (102)
Q Consensus        85 fLyl~Ys~~~afG~~~~~  102 (102)
                      ||||+||+|+|||+-+++
T Consensus       113 fLyv~Ys~e~tfG~~~~~  130 (130)
T 2zjd_A          113 FLYMVYASQETFGMKLSV  130 (130)
T ss_dssp             CEEEEEEEHHHHHHC---
T ss_pred             EEEEEEeCCcccCCcccC
Confidence            999999999999976653

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=1.8e-38  Score=218.93  Aligned_cols=90  Identities=50%  Similarity=0.902  Sum_probs=85.7

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||||++.  ++++|.|+|+||+||.++||+||+.+||+||+|+++++|||||||.+|++|++||+||++|||+||||
T Consensus        28 ~IPVIve~~~--~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL  105 (117)
T 1eo6_A           28 RVPVIVEKVS--GSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFL  105 (117)
T ss_dssp             EEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred             eEEEEEEecC--CCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEE
Confidence            3899999965  46799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCC
Q 034167           87 YVTYSGENTFGS   98 (102)
Q Consensus        87 yl~Ys~~~afG~   98 (102)
                      ||+||+|+|||+
T Consensus       106 yi~Ys~~~~fG~  117 (117)
T 1eo6_A          106 YVAYSGENTFGF  117 (117)
T ss_dssp             EEEEECCCCCC-
T ss_pred             EEEEeCCccCCC
Confidence            999999999995

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=5.3e-38  Score=208.77  Aligned_cols=87  Identities=23%  Similarity=0.409  Sum_probs=84.1

Q ss_pred             eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCeEE
Q 034167            9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLY   87 (102)
Q Consensus         9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGfLy   87 (102)
                      .-|++||++ .|++|.|+|+||+||+++||+||+.+|||||+|+++++|||||||+ +|++|++||+||++|| +|||||
T Consensus         4 ~Kv~v~fk~-~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy   81 (91)
T 4gdk_A            4 KKIDILLKA-VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV   81 (91)
T ss_dssp             CEEEEEEEE-CSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred             ceEEEEEEe-cCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence            568999999 8999999999999999999999999999999999999999999995 7999999999999999 999999


Q ss_pred             EEecCCcccC
Q 034167           88 VTYSGENTFG   97 (102)
Q Consensus        88 l~Ys~~~afG   97 (102)
                      |+||+++|||
T Consensus        82 v~Ys~~~afG   91 (91)
T 4gdk_A           82 LHYCKSQAWG   91 (91)
T ss_dssp             EEEESSCCCC
T ss_pred             EEEeCccccC
Confidence            9999999999

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=100.00  E-value=1.4e-35  Score=197.20  Aligned_cols=86  Identities=13%  Similarity=0.371  Sum_probs=71.4

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCc-CCCCCchHHHHHhhccCCCCe
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGF   85 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~-lp~~~~~m~~lY~~~kd~DGf   85 (102)
                      ..+-|.+||++ .|++|+|+|+||+||+++|+++|+.+|||||++   ++|||||||+ +|++|++||+||++|| +|||
T Consensus         5 ~~~Kv~vrfk~-~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~   79 (91)
T 3w1s_C            5 NIQKIQIKFQP-IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE   79 (91)
T ss_dssp             -CCEEEEEEEE-CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred             CCCeEEEEEEe-cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence            34678999999 899999999999999999999999999999999   6999999995 8999999999999999 7999


Q ss_pred             EEEEecCCcccC
Q 034167           86 LYVTYSGENTFG   97 (102)
Q Consensus        86 Lyl~Ys~~~afG   97 (102)
                      |||+||+++|||
T Consensus        80 Lyv~Ys~~~afG   91 (91)
T 3w1s_C           80 LIVSYCASVAFG   91 (91)
T ss_dssp             EEEEEEC---CC
T ss_pred             EEEEEeCccccC
Confidence            999999999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=4.9e-35  Score=196.12  Aligned_cols=84  Identities=15%  Similarity=0.372  Sum_probs=79.7

Q ss_pred             eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeEE
Q 034167            9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLY   87 (102)
Q Consensus         9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfLy   87 (102)
                      .-|++++++ .+++|.|+|+||+||+++||+||+.+|||||+++   +||||||| ++|++|++|++||++||| |||||
T Consensus        12 ~KV~V~~~~-~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGfLy   86 (96)
T 1wz3_A           12 QKIVVHLRA-TGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGKLV   86 (96)
T ss_dssp             CEEEEEEEE-CTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTBEE
T ss_pred             CeEEEEEEE-CCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCEEE
Confidence            478888888 6889999999999999999999999999999998   99999999 799999999999999998 99999


Q ss_pred             EEecCCcccC
Q 034167           88 VTYSGENTFG   97 (102)
Q Consensus        88 l~Ys~~~afG   97 (102)
                      |+||+++|||
T Consensus        87 i~Ys~~~afG   96 (96)
T 1wz3_A           87 VNYACSMAWG   96 (96)
T ss_dssp             EEEESCSCC-
T ss_pred             EEEeCCcccC
Confidence            9999999999

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=8.9e-35  Score=198.36  Aligned_cols=84  Identities=46%  Similarity=0.865  Sum_probs=80.2

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||||+..  ++++|.|+|+||+||.++||+||+.+||+||+++++++|||||||.+|++|++|++||++|||+||||
T Consensus        27 ~IPVive~~~--~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfL  104 (110)
T 2r2q_A           27 RVPVIVEKAP--KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFL  104 (110)
T ss_dssp             EEEEEEEECT--TCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred             ceEEEEEecC--CCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEE
Confidence            4899999964  46799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q 034167           87 YVTYSG   92 (102)
Q Consensus        87 yl~Ys~   92 (102)
                      ||+||+
T Consensus       105 yi~Ys~  110 (110)
T 2r2q_A          105 YVAYSD  110 (110)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999985

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=94.09  E-value=0.13  Score=39.34  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=31.4

Q ss_pred             eEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           56 AIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        56 slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      ...+.+++-.++.++.+.+||++++-.|||||+.-..
T Consensus       235 ~~~viihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~  271 (275)
T 4gdk_B          235 KNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP  271 (275)
T ss_dssp             CEEEEBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred             cceEEEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence            3456677777999999999999999999999997653

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=93.42  E-value=0.091  Score=33.76  Aligned_cols=49  Identities=18%  Similarity=0.265  Sum_probs=40.6

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA   74 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~   74 (102)
                      +.-+|.|+.+.++.+++..-|++-+++++.++.|..++.-..+++++.+
T Consensus        20 ~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D   68 (82)
T 3goe_A           20 EDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS   68 (82)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence            4568999999999999999999999999999998888865444555443

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=93.10  E-value=0.077  Score=40.50  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             CcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEE
Q 034167           35 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVT   89 (102)
Q Consensus        35 ~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~   89 (102)
                      ..|+++++.   ..+--- .....+++++-.++.++.|.+||+++.-.|||||+.
T Consensus       222 ~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~DgFLhiv  272 (274)
T 3vqi_A          222 ELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASIDGFLYLV  272 (274)
T ss_dssp             -CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCTTSCEEEE
T ss_pred             cccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCCCceEEEE
Confidence            556666544   433211 123346677777899999999999999999999986

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=91.74  E-value=0.16  Score=39.18  Aligned_cols=39  Identities=21%  Similarity=0.473  Sum_probs=32.7

Q ss_pred             cceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           54 EKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        54 ~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      +.+..+.+++-.|+.++.+.+||++++-.|||||+.-..
T Consensus       248 ~~~~~viihGI~vpl~~pl~wl~~~l~~pDgFLhIvv~~  286 (297)
T 2dyo_A          248 GNDVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLVP  286 (297)
T ss_dssp             --CEEEEETTEEECTTCBHHHHHHHHCCTTSCEEEEEEE
T ss_pred             CCCCeEEEeCccCCCCCcHHHHHHHhcCCCcEEEEEEEE
Confidence            444578888888889999999999999999999998763

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=88.94  E-value=1.6  Score=26.63  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      ...|.|.++.+++.++...+++.++++++--|+| ++.....++|.+++
T Consensus        20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   67 (79)
T 3a4r_A           20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL   67 (79)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4578899999999999999999999988655666 55555667888887

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=88.11  E-value=1.8  Score=25.55  Aligned_cols=60  Identities=10%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys   91 (102)
                      ..+-|..+.|++++...+.++.++++++--++| ++.....+.+++++-  -+ ++..+++...
T Consensus        16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~~   75 (79)
T 2uyz_B           16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE   75 (79)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEEe
Confidence            457799999999999999999999987554544 555556677887752  11 3346776653

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=87.39  E-value=2.1  Score=25.43  Aligned_cols=49  Identities=10%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      +...|.|.++.+++.++...+++.++++++--|+|=+..+ ..++|.+++
T Consensus        12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l   60 (72)
T 1wm3_A           12 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL   60 (72)
T ss_dssp             CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred             CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence            3567889999999999999999999998776677644443 444555544

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=86.62  E-value=2.5  Score=26.67  Aligned_cols=61  Identities=11%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             eEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167            9 RYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus         9 ~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      +-|.++.+...+     +...|.|.++.+++.++...+++.++++++--|+| ++.....++|.+++
T Consensus         4 ~~i~ikVk~~~g-----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl   64 (91)
T 2io0_B            4 DHINLKVAGQDG-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL   64 (91)
T ss_dssp             CEEEEEEECTTS-----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred             CeEEEEEECCCC-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            345666665333     45678899999999999999999999987666666 44434455666655

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=84.89  E-value=3.2  Score=26.28  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=42.7

Q ss_pred             EecCCcchHhHHHHHHHHhcCCCcceEEEEEc---C-cCCCCCchHHHHHhhccCCCCeEEE
Q 034167           31 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---N-VLPPTGAIMSAIYEEKKDEDGFLYV   88 (102)
Q Consensus        31 lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVn---n-~lp~~~~~m~~lY~~~kd~DGfLyl   88 (102)
                      -||.+.+++++..-|++||++++++...-|=.   + ..+..|+.|.+.++.=+  +|.|-+
T Consensus        19 rvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL   78 (83)
T 1oey_A           19 KTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL   78 (83)
T ss_dssp             EECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence            48999999999999999999987665555554   2 24678889999988765  445443

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=83.36  E-value=5.2  Score=23.80  Aligned_cols=60  Identities=7%  Similarity=-0.001  Sum_probs=42.3

Q ss_pred             EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      .+-|+.+.|++++...|.++.++++++-- |+.++.....+.++++.=  -+ ++..|++....
T Consensus        21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~Gk~L~d~~tL~~~~--i~-~g~~i~l~~~~   80 (87)
T 1wh3_A           21 AYAINPNSFILGLKQQIEDQQGLPKKQQQ-LEFQGQVLQDWLGLGIYG--IQ-DSDTLILSKKK   80 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTEE-EEETTEECCSSSBHHHHT--CC-TTEEEEEEECS
T ss_pred             EEEeCCCChHHHHHHHHHHHhCCChHHEE-EEECCEEccCCCCHHHCC--CC-CCCEEEEEEec
Confidence            45699999999999999999999876443 334665556677887651  12 34477777654

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=83.14  E-value=7.1  Score=25.08  Aligned_cols=48  Identities=15%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      ...|.|.++.+++.++..-+++.+++.+.--|+| ++....+++|..+|
T Consensus        38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL   85 (97)
T 2jxx_A           38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL   85 (97)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4578999999999999999999999988655665 66555667788887

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=82.72  E-value=3.7  Score=26.94  Aligned_cols=48  Identities=10%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             eeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           27 NYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        27 k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      ...|.|.++.+++.++...+++.++++++--|+| ++.....++|..++
T Consensus        38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl   85 (110)
T 2k8h_A           38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL   85 (110)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4578899999999999999999999988666666 55555667888888

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=82.64  E-value=2.3  Score=25.07  Aligned_cols=61  Identities=10%  Similarity=0.072  Sum_probs=42.5

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      ..+-|+.+.||+++...|.++.++++++-- |+.++.....+.++++.  .-+ ++..|++....
T Consensus        16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qr-L~~~g~~L~d~~tL~~~--~i~-~~~~l~l~~r~   76 (85)
T 3mtn_B           16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NIQ-KWSTLFLLLRL   76 (85)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTGGG--TCC-TTCEEEEECCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCCHHHc--CCC-CCCEEEEEEEC
Confidence            345699999999999999999999876433 33466655666777663  112 35577777643

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=82.13  E-value=4.5  Score=25.18  Aligned_cols=60  Identities=10%  Similarity=0.098  Sum_probs=43.3

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys   91 (102)
                      ..+-|..+.|++++...+..+.++++++--++| ++.....+.+++++-  -+ ++..|++...
T Consensus        34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I~l~~~   93 (97)
T 1wyw_B           34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE   93 (97)
T ss_dssp             EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEEEEEES
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEEEEEEe
Confidence            456799999999999999999999987554544 555556677888752  22 3447777654

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=81.48  E-value=2.2  Score=25.23  Aligned_cols=62  Identities=11%  Similarity=0.096  Sum_probs=43.1

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecCC
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE   93 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~~   93 (102)
                      ..+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++.  .-+ ++..|++.....
T Consensus        16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i~-~~~~i~l~~rl~   77 (85)
T 3n3k_B           16 IILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIH-NHSALYLLLKLR   77 (85)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TCC-TTCEEEEEECCC
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CCC-CCCEEEEEEecc
Confidence            34568999999999999999999987643 344466655666677663  122 355788776543

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=81.25  E-value=2.9  Score=23.94  Aligned_cols=59  Identities=10%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys   91 (102)
                      ..+-|+.+.|++++...|.++.++++++- -|+.++.....+.++++.    .- ++..+++...
T Consensus        13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~   72 (76)
T 3a9j_A           13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR   72 (76)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence            34669999999999999999999987643 344466544456666543    22 3446777654

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=80.54  E-value=4.5  Score=24.23  Aligned_cols=60  Identities=8%  Similarity=-0.005  Sum_probs=41.9

Q ss_pred             EE-EecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEecC
Q 034167           29 RY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG   92 (102)
Q Consensus        29 Kf-lVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys~   92 (102)
                      .+ -|+.+.|++++...|.++.++++++--. +.++.....+.++++.=  -+ ++..|++....
T Consensus        22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~gk~L~d~~tL~~~~--i~-~g~~i~l~~~~   82 (89)
T 1wy8_A           22 TIEDVSRKATIEELRERVWALFDVRPECQRL-FYRGKQLENGYTLFDYD--VG-LNDIIQLLVRP   82 (89)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHSCCCTTTEEE-EETTEECCSSSBHHHHT--CC-TTCEEEEEECC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHCcChhhEEE-EECCeECCCCCCHHHCC--CC-CCCEEEEEEeC
Confidence            45 3899999999999999999998764433 34665556677887651  12 34578877654

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=80.52  E-value=3.4  Score=23.58  Aligned_cols=59  Identities=5%  Similarity=-0.008  Sum_probs=40.6

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccC-CCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd-~DGfLyl~Ys   91 (102)
                      ..+-|+.+.|++++...|.++.++++++- -|+.++.....+.++++.    +- ++..+++...
T Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~   72 (76)
T 1ndd_A           13 IEIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY----KILGGSVLHLVLA   72 (76)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence            34669999999999999999999987643 344566544556666553    22 3446777654

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=80.18  E-value=6.1  Score=25.58  Aligned_cols=60  Identities=17%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys   91 (102)
                      ..+-|.++.||+++...|..+-++++++--. ..+++....+.++++ |.-.  ++..|+|.|.
T Consensus        41 i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrL-i~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~  100 (100)
T 1uh6_A           41 VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL-KKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ  100 (100)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHCCCGGGCEE-EETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred             EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEE-EECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence            3456999999999999999999998765433 344555566778887 4322  3447888884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	2e-37
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	5e-35
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	1e-30

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (301), Expect = 2e-37
 Identities = 45/78 (57%), Positives = 62/78 (79%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           S + + +  +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +YE++
Sbjct: 39  SQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98

Query: 80  KDEDGFLYVTYSGENTFG 97
           KDEDGFLYV YSGENTFG
Sbjct: 99  KDEDGFLYVAYSGENTFG 116

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-35
 Identities = 41/78 (52%), Positives = 58/78 (74%)

Query: 20  SSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEK 79
           + + + +  +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y+E 
Sbjct: 41  ARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 100

Query: 80  KDEDGFLYVTYSGENTFG 97
            +ED FLY+ YS E+ +G
Sbjct: 101 HEEDFFLYIAYSDESVYG 118

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 1e-30
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 11  LILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTG 69
           +I+        LP  +  ++LVP  + + + + +IR+R++L+A +A F+ V+ + +    
Sbjct: 32  VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVS 91

Query: 70  AIMSAIYEEKKDEDGFLYVTYSGENTFG 97
             +S +YE +KDEDGFLY+ Y+ + TFG
Sbjct: 92  TPISEVYESEKDEDGFLYMVYASQETFG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.93
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	91.91
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	88.43
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	87.4
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	87.26
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	84.16
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	81.08

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=219.21  Aligned_cols=89  Identities=46%  Similarity=0.856  Sum_probs=85.5

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||+|+..  ++++|+|+++|||||+|+|++||+.+||+||+|++++||||||||++|+++++||+||++|||+||||
T Consensus        30 riPVIve~~~--~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn~~~~~~~~ti~~lY~~~kdeDGfL  107 (118)
T d3d32a1          30 RVPVIVEKAP--KARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFL  107 (118)
T ss_dssp             EEEEEEEECT--TCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTCBHHHHHHHHCCTTSCE
T ss_pred             CceEEEEEcC--CCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEECCcccCccccHHHHHHHhCCCCcEE
Confidence            3899999944  57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+|+|||
T Consensus       108 Yi~Ys~entFG  118 (118)
T d3d32a1         108 YIAYSDESVYG  118 (118)
T ss_dssp             EEEEESCTTCC
T ss_pred             EEEEecccccC
Confidence            99999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-38  Score=216.24  Aligned_cols=89  Identities=51%  Similarity=0.922  Sum_probs=85.7

Q ss_pred             EeeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeE
Q 034167            7 TTRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         7 ~~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      -||||+|+..  .+++|.|||.|||||.|+|++||+.+||+||+|++++||||||||++|+++++||+||++|||+||||
T Consensus        28 rIPVIve~~~--~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~~~l~~~s~~i~~lY~~~KdeDGfL  105 (116)
T d1eo6a_          28 RVPVIVEKVS--GSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFL  105 (116)
T ss_dssp             EEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred             CceEEEEECC--cCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEECCcccchhhhHHHHHHHcCCCCcEE
Confidence            4899999954  46899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+|++|++||
T Consensus       106 Yi~Ys~entFG  116 (116)
T d1eo6a_         106 YVAYSGENTFG  116 (116)
T ss_dssp             EEEEECCCCCC
T ss_pred             EEEEeccccCC
Confidence            99999999999

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=217.74  Aligned_cols=89  Identities=34%  Similarity=0.729  Sum_probs=85.6

Q ss_pred             eeEEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeE
Q 034167            8 TRYLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFL   86 (102)
Q Consensus         8 ~~vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfL   86 (102)
                      ||||+|+... .+++|+|+|+|||||+++|++||+.+||+||++++++|||||||+ .+|+++++||+||++|||+||||
T Consensus        30 iPVIve~~~~-~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfvn~~~~p~~~~~i~~lY~~~kdeDGfL  108 (119)
T d2zjda1          30 IPVIIERYKG-EKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFL  108 (119)
T ss_dssp             EEEEEEECTT-CCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred             ceEEEEECCC-CCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEEcCCccCCchhHHHHHHHHcCCCCCeE
Confidence            8999999765 678999999999999999999999999999999999999999996 68999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034167           87 YVTYSGENTFG   97 (102)
Q Consensus        87 yl~Ys~~~afG   97 (102)
                      ||+||+|+|||
T Consensus       109 Yi~Ys~entFG  119 (119)
T d2zjda1         109 YMVYASQETFG  119 (119)
T ss_dssp             EEEEEEHHHHH
T ss_pred             EEEEeccccCC
Confidence            99999999998

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.3e-26  Score=150.32  Aligned_cols=82  Identities=15%  Similarity=0.360  Sum_probs=77.9

Q ss_pred             EEEEEeecCCCCCCCcceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcC-cCCCCCchHHHHHhhccCCCCeEEE
Q 034167           10 YLILSYTNKVSSLPECENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGFLYV   88 (102)
Q Consensus        10 vIi~~~~~~~~~~P~L~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn-~lp~~~~~m~~lY~~~kd~DGfLyl   88 (102)
                      -|++|+++ .|++|.|+++||.|.++.+++.++.+|||+|+   .+++|+|||| ++|++|+++|+||+||+ .||.|.+
T Consensus         2 KV~v~fk~-iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~-~~gkLvv   76 (84)
T d1wz3a1           2 KIVVHLRA-TGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG-FDGKLVV   76 (84)
T ss_dssp             EEEEEEEE-CTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC-BTTBEEE
T ss_pred             cEEEEEEe-cCCCcccccceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC-CCCEEEE
Confidence            37889999 89999999999999999999999999999998   5799999998 69999999999999998 8999999


Q ss_pred             EecCCccc
Q 034167           89 TYSGENTF   96 (102)
Q Consensus        89 ~Ys~~~af   96 (102)
                      +||.++||
T Consensus        77 ~Y~~t~Aw   84 (84)
T d1wz3a1          77 NYACSMAW   84 (84)
T ss_dssp             EEESCSCC
T ss_pred             EEeccccC
Confidence            99999998

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=91.91  E-value=0.097  Score=30.65  Aligned_cols=49  Identities=8%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      +...|.|..+.+++++...+.++.++++++--|+| |+.....+.|++++
T Consensus        14 ~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~l~~~~T~~~~   62 (79)
T d1euvb_          14 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL   62 (79)
T ss_dssp             CEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEEeCCCCCHHHC
Confidence            34568999999999999999999999988766665 66555555566554

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=1.3  Score=25.30  Aligned_cols=49  Identities=8%  Similarity=0.110  Sum_probs=38.8

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI   75 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~l   75 (102)
                      ....|.|.++.+++.+.....++.++++++.-|+| |+.....+.|+.++
T Consensus        13 ~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~f-dG~~l~~~~T~~~l   61 (77)
T d2uyzb1          13 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL   61 (77)
T ss_dssp             CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHH
T ss_pred             CEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCCHHHc
Confidence            34569999999999999999999999988776664 55444445788776

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.40  E-value=1.5  Score=24.82  Aligned_cols=61  Identities=20%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEe
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY   90 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Y   90 (102)
                      ++..+-|.++.|++++...|..+.++++++- -|+.++.....+.++++ |. =+ ++..|+|.|
T Consensus        12 k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q-~Li~~Gk~L~d~~tL~~-y~-I~-~gstl~L~~   72 (73)
T d1m94a_          12 KKVRVKCLAEDSVGDFKKVLSLQIGTQPNKI-VLQKGGSVLKDHISLED-YE-VH-DQTNLELYY   72 (73)
T ss_dssp             EEEEEEECTTSBHHHHHHHHHHHHCCTTTSE-EEESSSCEECTTSBHHH-HT-CC-TTEEEEEEE
T ss_pred             CEEEEEECCcCcHHHHHHHHHHhhcccccEE-EEEEEeEEecccCcHHH-cC-CC-CCCEEEEEE
Confidence            4455679999999999999999999998654 44456665567778887 22 22 344777776

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.26  E-value=1.3  Score=27.06  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=37.7

Q ss_pred             ceeEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167           26 ENYRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA   74 (102)
Q Consensus        26 ~k~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~   74 (102)
                      ++..+-|.++.||++|..-|..+.++++++--.+ .++.....+.+|++
T Consensus        39 k~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~d   86 (100)
T d1uh6a_          39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWYTIFKDHVSLGD   86 (100)
T ss_dssp             SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCSSCBHHH
T ss_pred             CEEEEEECCcChHHHHHHHHHHHHCCCcceEEEE-EEeecccCcCCHHH
Confidence            4456779999999999999999999998655444 46666677777765

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=1.9  Score=25.11  Aligned_cols=60  Identities=12%  Similarity=0.150  Sum_probs=44.1

Q ss_pred             eEEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHHHHhhccCCCCeEEEEec
Q 034167           28 YRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS   91 (102)
Q Consensus        28 ~KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~lY~~~kd~DGfLyl~Ys   91 (102)
                      ..+-|..+.||.++...|..+.++++++--.+| ++.....+.+|++ |.= + ++-.|+|.-.
T Consensus        20 ~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~-y~I-~-~~stl~l~~r   79 (87)
T d1wh3a_          20 YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI-YGI-Q-DSDTLILSKK   79 (87)
T ss_dssp             EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH-HTC-C-TTEEEEEEEC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH-cCC-C-CCCEEEEEec
Confidence            345699999999999999999999987655555 6665567889887 322 2 3457777643

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=3.6  Score=24.01  Aligned_cols=45  Identities=11%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             EEEecCCcchHhHHHHHHHHhcCCCcceEEEEEcCcCCCCCchHHH
Q 034167           29 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA   74 (102)
Q Consensus        29 KflVp~~~tv~~f~~~lRk~L~l~~~~slFlyVnn~lp~~~~~m~~   74 (102)
                      .+-|+.+.|++++...|..+.+.++++--.+| ++.....+.+|++
T Consensus        25 ~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~-~Gk~L~D~~tL~d   69 (86)
T d1zkha1          25 VFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-EGIFIKDSNSLAY   69 (86)
T ss_dssp             EEEECTTSBHHHHHHHHHHHTCCCTTTEEEEE-TTEEECTTSBHHH
T ss_pred             EEEECCCChHHHHHHHHHhhhcCChHHEEEEe-CCcCcCCCCCHHH
Confidence            46699999999999999999999877654444 5554456788887