Citrus Sinensis ID: 034226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Secondary Structure (PSIPRED)
ccHHHHccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEEccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MSEETKKSVTGALvvkpnsddrkptvavsqsgkrIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKdfdkkhgptwhcivgsnfgnpiyfhffs
Flexible Loop (DISEMBL)
mseetkksvtgalvvkpnsddrkptvavsqsgkriiiksadmkeDLQKEAVDIAIAafeknsvekdVAERIKkdfdkkhgptwHCIVGSNFGNPIYFHFFS
Low Complexity Region (SEG)
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Disordered region (IsUnstruct)
************************************************EAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFF*
Disordered Region (DISOPRED)
************************************IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Disordered Region (DISEMBL)
**********GALVVKPN************SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Disordered Region (DISPRO)
********************************KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q78P75	89	Dynein light chain 2, cyt	yes	no	0.643	0.730	0.584	8e-18
Q9D0M5	89	Dynein light chain 2, cyt	yes	no	0.643	0.730	0.584	8e-18
Q96FJ2	89	Dynein light chain 2, cyt	yes	no	0.643	0.730	0.584	8e-18
Q3MHR3	89	Dynein light chain 2, cyt	yes	no	0.643	0.730	0.584	8e-18
Q24117	89	Dynein light chain 1, cyt	yes	no	0.643	0.730	0.569	2e-17
O02414	89	Dynein light chain LC6, f	N/A	no	0.643	0.730	0.584	2e-17
O96860	89	Dynein light chain 2, cyt	yes	no	0.643	0.730	0.569	4e-17
Q39580	91	Dynein 8 kDa light chain,	N/A	no	0.673	0.747	0.529	4e-17
Q22799	89	Dynein light chain 1, cyt	yes	no	0.623	0.707	0.555	6e-17
P63170	89	Dynein light chain 1, cyt	no	no	0.623	0.707	0.539	3e-16

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.
Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Anthocidaris crassispina (taxid: 7629)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRN 61

Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 51/68 (75%)

Query: 28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
          ++    + +IK+ADM E++Q +AVD A  A EK ++EKD+A  IKK+FD+KH PTWHCIV
Sbjct: 1  MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIV 60

Query: 88 GSNFGNPI 95
          G NFG+ +
Sbjct: 61 GRNFGSYV 68

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 51/63 (80%)

Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
          ++ +IK+ADM +D+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4  RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 93 NPI 95
          + +
Sbjct: 64 SYV 66

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 51/63 (80%)

Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
          ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4  RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFG 63

Query: 93 NPI 95
          + +
Sbjct: 64 SYV 66

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
356556098	122	PREDICTED: dynein light chain 2, cytopla	0.920	0.762	0.659	1e-29
351723219	118	uncharacterized protein LOC100527842 [Gl	0.920	0.788	0.666	2e-29
255551805	126	cytoplasmic dynein light chain, putative	0.891	0.714	0.7	3e-29
427199398	125	dynein light chain [Morella rubra]	0.920	0.744	0.65	3e-29
449465567	117	PREDICTED: dynein light chain 1, cytopla	0.930	0.803	0.652	5e-29
356529436	157	PREDICTED: dynein light chain 2, cytopla	0.940	0.605	0.646	4e-28
224130510	120	predicted protein [Populus trichocarpa]	0.930	0.783	0.663	5e-28
225431758	117	PREDICTED: dynein 8 kDa light chain, fla	0.930	0.803	0.652	5e-28
351723769	118	uncharacterized protein LOC100305908 [Gl	0.940	0.805	0.663	3e-27
357478823	130	Dynein light chain 1 cytoplasmic-like pr	0.940	0.730	0.579	2e-25

>gi|356556098|ref|XP_003546364.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 80/97 (82%), Gaps = 4/97 (4%)

Query: 1  MSEETKKSVTGALVVKPNSDDRK----PTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIA 56
          MSE+ KK++ GAL  +PNSDD+K    P+ A +   K++IIKSADM  D+QKEAVDIA+A
Sbjct: 1  MSEDAKKNIAGALTARPNSDDQKLSPLPSPAPAVPPKKVIIKSADMIPDMQKEAVDIAVA 60

Query: 57 AFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
          AFEK +VEKDVAE+IKK+FDK+HGPTWHCIVG NFG+
Sbjct: 61 AFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGS 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723219|ref|NP_001238295.1| uncharacterized protein LOC100527842 [Glycine max] gi|255633354|gb|ACU17034.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 77/93 (82%)

Query: 1  MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
          MSEE KK+  GAL  +P SDD+K   A++   K++IIKSADM  D+QKEAVDIA+AAFE+
Sbjct: 1  MSEEAKKNFVGALTARPTSDDQKQAPALNVPPKKVIIKSADMIPDMQKEAVDIAVAAFER 60

Query: 61 NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
           +VEKDVAE+IKK+FDK+HGPTWHCIVG NFG+
Sbjct: 61 YNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGS 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551805|ref|XP_002516948.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223544036|gb|EEF45562.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 75/90 (83%)

Query: 2  SEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKN 61
          +EE K+S+ G LV KP SDD K + A   + K+IIIK+ADMK D+QKEAVDIAIAAFEKN
Sbjct: 3  TEEAKRSIIGGLVTKPISDDPKVSPATPPTAKKIIIKNADMKVDMQKEAVDIAIAAFEKN 62

Query: 62 SVEKDVAERIKKDFDKKHGPTWHCIVGSNF 91
          +VEKDVAE IKK+FD++HGPTWHCIVG NF
Sbjct: 63 NVEKDVAEHIKKEFDRRHGPTWHCIVGRNF 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199398|gb|AFY26900.1| dynein light chain [Morella rubra]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 80/100 (80%), Gaps = 7/100 (7%)

Query: 1   MSEETKKSVTGALVVKP-NSDDRKPTVAVSQ------SGKRIIIKSADMKEDLQKEAVDI 53
           MSE+ K+++ G L+VKP +SDDRKP+ A         SGKR+IIKSADM  D+QKEA+D 
Sbjct: 1   MSEDAKRAIQGGLMVKPPSSDDRKPSAAAGPRPATPPSGKRVIIKSADMLPDMQKEAIDT 60

Query: 54  AIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
           AIAAFEK+SVEKDVAE IKK+FD++HG TWHCIVG NFG+
Sbjct: 61  AIAAFEKHSVEKDVAEHIKKEFDQRHGSTWHCIVGRNFGS 100

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465567|ref|XP_004150499.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus] gi|449528079|ref|XP_004171034.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 81/95 (85%), Gaps = 1/95 (1%)

Query: 1  MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
          MS + K+S+ G L+VK  S+DRKP  AV+ +GK+I+IKSADM  D+QK+A+D+AIAAFEK
Sbjct: 1  MSNDAKRSIQGTLLVKSVSEDRKPP-AVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEK 59

Query: 61 NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
          +SVEKD+AE IKK+FDK+HGPTWHCIVG NFG+ +
Sbjct: 60 HSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYV 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529436|ref|XP_003533298.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 81/99 (81%), Gaps = 4/99 (4%)

Query: 1   MSEETKKSVTGALVVKPNSDDRKPTVAVSQSG----KRIIIKSADMKEDLQKEAVDIAIA 56
           MSE+ KK++ GAL  +PNSDD+KP+   S +     K++IIKSADM  D+QKEAVDIA+A
Sbjct: 36  MSEDAKKNIAGALTARPNSDDQKPSPLPSPAPAVPPKKVIIKSADMIPDMQKEAVDIAVA 95

Query: 57  AFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
           AFEK +VEKDVAE+IKK+FDK+HGPTWHCIVG NFG+ +
Sbjct: 96  AFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYV 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130510|ref|XP_002328627.1| predicted protein [Populus trichocarpa] gi|118482080|gb|ABK92971.1| unknown [Populus trichocarpa] gi|222838609|gb|EEE76974.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 2  SEETKKSVTGALVVKPNSDDRKPT-VAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
          SE+ K+S+TG + V+ +S  RK +  A +  GK+IIIK+ADMK+D+QKEAVDIAIAAFE+
Sbjct: 3  SEDMKRSITGGVKVENDSYYRKSSPAAAAPPGKKIIIKNADMKDDMQKEAVDIAIAAFER 62

Query: 61 NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
          N+VEKDVAE IKK+FDKKHGPTWHCIVG NFG+ +
Sbjct: 63 NNVEKDVAEHIKKEFDKKHGPTWHCIVGRNFGSYV 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431758|ref|XP_002270438.1| PREDICTED: dynein 8 kDa light chain, flagellar outer arm [Vitis vinifera] gi|147857576|emb|CAN81003.1| hypothetical protein VITISV_006994 [Vitis vinifera]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 1  MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
          M+E+ K++   AL +K +SDDRK ++A S S KR+IIKSADMK+D+QKEA+DIAIAA E 
Sbjct: 1  MAEDLKRNGALALSLKQSSDDRKLSLAASAS-KRVIIKSADMKDDMQKEAIDIAIAASEN 59

Query: 61 NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
          +SVEK++AE IKK+FDKKHGPTWHCIVG NFG+ +
Sbjct: 60 HSVEKNIAEYIKKEFDKKHGPTWHCIVGRNFGSYV 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723769|ref|NP_001238570.1| uncharacterized protein LOC100305908 [Glycine max] gi|255626947|gb|ACU13818.1| unknown [Glycine max]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 77/95 (81%)

Query: 1  MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60
          MSEE KK+  GAL  +PNSD+ KP    +   K++IIKSADM  D+QKEAVDIA+AAFEK
Sbjct: 1  MSEEAKKNFAGALTARPNSDEPKPAPVPAVPPKKVIIKSADMIPDMQKEAVDIAVAAFEK 60

Query: 61 NSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
           +VEKDVAE+IKK+FDK+HGPTWHCIVG NFG+ +
Sbjct: 61 YNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYV 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478823|ref|XP_003609697.1| Dynein light chain 1 cytoplasmic-like protein [Medicago truncatula] gi|355510752|gb|AES91894.1| Dynein light chain 1 cytoplasmic-like protein [Medicago truncatula] gi|388518223|gb|AFK47173.1| unknown [Medicago truncatula]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 76/107 (71%), Gaps = 12/107 (11%)

Query: 1   MSEETKKSVTG---ALVVKPNSDDRKPTVAVSQSG---------KRIIIKSADMKEDLQK 48
           MSEE KK   G   AL+ K  ++DRKP V    S          K++IIKSADM  D+QK
Sbjct: 1   MSEEAKKHSAGGGAALMAKSLTEDRKPLVTSPLSASASPATPATKKVIIKSADMLPDMQK 60

Query: 49  EAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
           EAVDIA+ AFE+++VEKDVAE IKK+FDK+HGPTWHCIVG NFG+ +
Sbjct: 61  EAVDIAVVAFERHNVEKDVAETIKKEFDKRHGPTWHCIVGRNFGSYV 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2129805	123	AT4G15930 "AT4G15930" [Arabido	0.920	0.756	0.622	4e-26
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.653	0.725	0.590	1.7e-18
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.643	0.714	0.584	4.6e-18
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.623	0.707	0.603	5.8e-18
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.623	0.707	0.603	5.8e-18
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.623	0.707	0.603	5.8e-18
MGI|MGI:1915347	89	Dynll2 "dynein light chain LC8	0.623	0.707	0.603	5.8e-18
RGD|619860	89	Dynll2 "dynein light chain LC8	0.623	0.707	0.603	5.8e-18
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.643	0.515	0.569	9.5e-18
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.623	0.707	0.587	1.6e-17

TAIR|locus:2129805 AT4G15930 "AT4G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/98 (62%), Positives = 74/98 (75%)

Query:     1 MSE-ETKKSVTGALVVKPNSDDRK---PTVAVSQ-SGKRIIIKSADMKEDLQKEAVDIAI 55
             MS+   KKSV G    +   DDR+   P V  S  +GKR +IKSADMK+D+QKEA++IAI
Sbjct:     1 MSDGRRKKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAI 60

Query:    56 AAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
             +AFEK SVEKD+AE IKK+FDKKHG TWHCIVG NFG+
Sbjct:    61 SAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 98

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 39/66 (59%), Positives = 53/66 (80%)

Query:    28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
             V+ S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIV
Sbjct:     1 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60

Query:    88 GSNFGN 93
             G NFG+
Sbjct:    61 GRNFGS 66

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query:    29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
             + S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct:     2 TMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 61

Query:    89 SNFGN 93
              NFG+
Sbjct:    62 RNFGS 66

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

MGI|MGI:1915347 Dynll2 "dynein light chain LC8-type 2" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0030286 "dynein complex" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

RGD|619860 Dynll2 "dynein light chain LC8-type 2" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEP

GO:0008092 "cytoskeletal protein binding" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA;ISO

GO:0030286 "dynein complex" evidence=IEA

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query:    29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
             + + ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct:    37 NMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 96

Query:    89 SNFGN 93
              NFG+
Sbjct:    97 RNFGS 101

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query:    31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
             S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct:     2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query:    91 FGN 93
             FG+
Sbjct:    62 FGS 64

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.5555	0.6237	0.7078	yes	no
Q78P75	DYL2_RAT	No assigned EC number	0.5846	0.6435	0.7303	yes	no
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.5846	0.6435	0.7303	yes	no
Q24117	DYL1_DROME	No assigned EC number	0.5692	0.6435	0.7303	yes	no
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.5846	0.6435	0.7303	yes	no
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.5846	0.6435	0.7303	yes	no
O96860	DYL2_DROME	No assigned EC number	0.5692	0.6435	0.7303	yes	no
P63169	DYL1_RABIT	No assigned EC number	0.5396	0.6237	0.7078	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__2725__AT4G15930.1 annotation not avaliable (123 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	3e-28
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	4e-27
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-08

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score = 97.2 bits (243), Expect = 3e-28
 Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 8/73 (10%)

Query: 35 IIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG-- 92
           ++K+ADM E++Q++A++ A  A EK +VEKD+A  IKK+FDKK+GPTWHCIVG NFG  
Sbjct: 3  AVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSY 62

Query: 93 ------NPIYFHF 99
                + IYF+ 
Sbjct: 63 VTHETKHFIYFYI 75

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 94.5 bits (235), Expect = 4e-27
 Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 8/78 (10%)

Query: 30 QSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGS 89
           S ++ ++K+ADM ED+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG 
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61

Query: 90 NFG--------NPIYFHF 99
          NFG        + IYF+ 
Sbjct: 62 NFGSYVTHETKHFIYFYL 79

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 37 IKSADMKEDLQKEAVDIA---IAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
          ++++DM   LQ  A   A   + A       K +A  +KK+FD  +GP WHCIVG++FG+
Sbjct: 38 VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	99.97
PTZ00059	90	dynein light chain; Provisional	99.97
PLN03058	128	dynein light chain type 1 family protein; Provisio	99.96
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	99.96
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	93.09

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=99.97  E-value=8.6e-32  Score=178.48  Aligned_cols=68  Identities=50%  Similarity=0.895  Sum_probs=65.2

Q ss_pred             CCCceEEeeCCCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEE
Q 034226           31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNS-VEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFH   98 (101)
Q Consensus        31 ~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~-~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~   98 (101)
                      +..+++|+.+|||++||++|++++.+||++|+ ++++||.+||++||++||++||||||+||||||||+
T Consensus         2 ~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe   70 (90)
T KOG3430|consen    2 LERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHE   70 (90)
T ss_pred             CCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEee
Confidence            45678999999999999999999999999999 889999999999999999999999999999999997

>PTZ00059 dynein light chain; Provisional

Probab=99.97  E-value=1e-30  Score=173.33  Aligned_cols=69  Identities=51%  Similarity=0.852  Sum_probs=65.4

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEec
Q 034226           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHFF  100 (101)
Q Consensus        32 ~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~~  100 (101)
                      ..+++|+.+|||++||++|++++.+|+++|+.++|||++||++||++|||+||||||++|||+|||+..
T Consensus         4 ~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~   72 (90)
T PTZ00059          4 DRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETK   72 (90)
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCC
Confidence            346789999999999999999999999999999999999999999999999999999999999999853

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=99.96  E-value=1e-29  Score=178.57  Aligned_cols=70  Identities=31%  Similarity=0.558  Sum_probs=66.1

Q ss_pred             CCCCceEEeeCCCCHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           30 QSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNS---VEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        30 ~~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~---~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      +.+.++.|+.+|||++||++|+++|.+|+++++   ++++||.+||++||++|||+||||||++|||+|||+-
T Consensus        31 ~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~  103 (128)
T PLN03058         31 KDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHST  103 (128)
T ss_pred             ccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcC
Confidence            567899999999999999999999999999974   6799999999999999999999999999999999984

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=99.96  E-value=2.2e-29  Score=165.66  Aligned_cols=69  Identities=49%  Similarity=0.856  Sum_probs=64.3

Q ss_pred             CCCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        31 ~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      +..+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||+.
T Consensus         2 ~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~   70 (89)
T PF01221_consen    2 SENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEP   70 (89)
T ss_dssp             GSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEET
T ss_pred             CCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcC
Confidence            357899999999999999999999999999999999999999999999999999999999999999984

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=93.09  E-value=0.52  Score=29.69  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             CchHHHHHHHHHHhcccCCCceEEEEeCC-CceeeEE
Q 034226           62 SVEKDVAERIKKDFDKKHGPTWHCIVGSN-FGNPIYF   97 (101)
Q Consensus        62 ~~ekdiA~~IK~~lDkkyG~~WHcIVGk~-FGS~vt~   97 (101)
                      .+...+++.|.+.+.++||+.+-||++++ |...+.+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~   58 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHT   58 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEec
Confidence            45678999999999999999999999995 5444433

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		3e-19
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		6e-19
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		7e-19
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		2e-18
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		2e-18
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		2e-18
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		4e-18
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		7e-18
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-17
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-17
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		4e-17
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		9e-16
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-09

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 53/67 (79%)
Query: 29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
          S S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG
Sbjct: 5  SMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 64
Query: 89 SNFGNPI 95
           NFG+ +
Sbjct: 65 RNFGSYV 71

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 5  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 64
Query: 91 FGNPI 95
          FG+ +
Sbjct: 65 FGSYV 69

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
          +  S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIV
Sbjct: 1  MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88 GSNFGNPI 95
          G NFG+ +
Sbjct: 61 GRNFGSYV 68

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 52/65 (80%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
          S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG N
Sbjct: 2  SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGNPI 95
          FG+ +
Sbjct: 62 FGSYV 66

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 51/63 (80%)
Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
          ++ +IK+ADM EDLQ++A+D A  A EK ++EKD+A  IKK+FD+KH PTWHC+VG NFG
Sbjct: 4  RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFG 63
Query: 93 NPI 95
          + +
Sbjct: 64 SYV 66

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
          +  S ++ +IK+ADM E++Q++AVD A  A EK ++E D+A  IKK+FDKK+ PTWHCIV
Sbjct: 1  MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88 GSNFGNPI 95
          G NFG+ +
Sbjct: 61 GRNFGSYV 68

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG-- 88
          S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG  
Sbjct: 2  SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRS 61
Query: 89 SNFGNPI 95
           NFG+ +
Sbjct: 62 GNFGSYV 68

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 51/63 (80%)
Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
          ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4  RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFG 63
Query: 93 NPI 95
          + +
Sbjct: 64 SYV 66

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 50/62 (80%)
Query: 34 RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGN 93
          + +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG+
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 94 PI 95
           +
Sbjct: 61 YV 62

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 8/71 (11%)
Query: 36 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG--- 92
          ++K+ DM E++Q +A+D A  A +K +VEKD+A  IKK+FD+K+ PTWHC+VG NFG   
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 93 -----NPIYFH 98
               N IYF+
Sbjct: 80 THETKNFIYFY 90

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 36 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPI 95
          I+K++D+ + L+++ + I+  A +K  +E+D+A  +KK  D K+G TWH IVG NFG+ +
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYV 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	6e-26
1yo3_A	102	Dynein light chain 1; structural genomics consorti	1e-24

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score = 91.3 bits (227), Expect = 6e-26
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 24 PTVAVSQSGK-RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPT 82
          P  ++S   K   I+K++D+ + L+++ + I+  A +K  +E+D+A  +KK  D K+G T
Sbjct: 2  PLGSMSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNT 61

Query: 83 WHCIVGSNFG 92
          WH IVG NFG
Sbjct: 62 WHVIVGKNFG 71

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score = 88.3 bits (219), Expect = 1e-24
 Identities = 32/74 (43%), Positives = 48/74 (64%)

Query: 19 SDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKK 78
          S       +     +  ++K+ DM E++Q +A+D A  A +K +VEKD+A  IKK+FD+K
Sbjct: 3  SSHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRK 62

Query: 79 HGPTWHCIVGSNFG 92
          + PTWHC+VG NFG
Sbjct: 63 YDPTWHCVVGRNFG 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	99.97
1yo3_A	102	Dynein light chain 1; structural genomics consorti	99.97
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	99.97

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=99.97  E-value=1.2e-32  Score=181.36  Aligned_cols=68  Identities=53%  Similarity=0.922  Sum_probs=65.5

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        32 ~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      ..+++|+.+|||++||++|+++|.+|+++|+.+++||++||++||++|||+||||||++|||+|||+-
T Consensus         3 ~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~   70 (89)
T 3rjs_A            3 DRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHET   70 (89)
T ss_dssp             CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEE
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcC
Confidence            35789999999999999999999999999999999999999999999999999999999999999985

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=99.97  E-value=7.8e-32  Score=181.74  Aligned_cols=71  Identities=44%  Similarity=0.770  Sum_probs=64.5

Q ss_pred             CCCCCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        29 ~~~~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      .....+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||+-
T Consensus        13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~   83 (102)
T 1yo3_A           13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHET   83 (102)
T ss_dssp             -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCC
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeC
Confidence            34667889999999999999999999999999999999999999999999999999999999999999974

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-32  Score=180.26  Aligned_cols=68  Identities=35%  Similarity=0.642  Sum_probs=65.2

Q ss_pred             CCceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        32 ~~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      ..+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||+-
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~   78 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEK   78 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECT
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcC
Confidence            56889999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	5e-26

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 90.2 bits (224), Expect = 5e-26
 Identities = 37/74 (50%), Positives = 55/74 (74%), Gaps = 6/74 (8%)

Query: 33  KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
           ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFG
Sbjct: 2   RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 61

Query: 93  NPI------YFHFF 100
           + +      + +F+
Sbjct: 62  SYVTHETRHFIYFY 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	99.97

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=4.8e-32  Score=176.26  Aligned_cols=67  Identities=54%  Similarity=0.909  Sum_probs=64.8

Q ss_pred             CceEEeeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCCceeeEEEe
Q 034226           33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGNPIYFHF   99 (101)
Q Consensus        33 ~~i~I~~sDM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lDkkyG~~WHcIVGk~FGS~vt~~~   99 (101)
                      .+++|+.+|||++||++|+++|.+|+++|+.+++||++||++||++|||+||||||++|||+|||+-
T Consensus         2 ~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~   68 (87)
T d3e2ba1           2 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET   68 (87)
T ss_dssp             CCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEET
T ss_pred             CcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecC
Confidence            5688999999999999999999999999999999999999999999999999999999999999984