Citrus Sinensis ID: 034290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
METATMGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Secondary Structure (PSIPRED)
cccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHcccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEcccccccccccccEEEEEcccEHHHHHHHHHHHHccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
metatmgiPFFLFICMnshkfyiptclqccrylvpadltvgQFVYVIRKRIKLSAEKAIFIFvdnvlpptgaimstiydekkdedgFLYVTYSGENTFG
Flexible Loop (DISEMBL)
METATMGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFifvdnvlpptgAIMSTIYDEKKDEDGFLYVTYSGENTFG
Low Complexity Region (SEG)
METATMGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered region (IsUnstruct)
*****MGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY*******
Disordered Region (DISOPRED)
**TATMGIPFFLFICMNSH******CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered Region (DISEMBL)
METATMGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Disordered Region (DISPRO)
*****MGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METATMGIPFFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9LZZ9	121	Autophagy-related protein	yes	no	0.858	0.702	0.802	4e-33
Q8VYK7	121	Autophagy-related protein	no	no	0.858	0.702	0.779	9e-33
Q8S926	122	Autophagy-related protein	no	no	0.858	0.696	0.732	1e-31
Q6C794	124	Autophagy-related protein	yes	no	0.858	0.685	0.755	3e-31
P0CO54	126	Autophagy-related protein	yes	no	0.858	0.674	0.732	2e-30
P0CO55	126	Autophagy-related protein	N/A	no	0.858	0.674	0.732	2e-30
Q0V3Y9	119	Autophagy-related protein	N/A	no	0.858	0.714	0.755	2e-30
Q8WZY7	121	Autophagy-related protein	N/A	no	0.858	0.702	0.755	2e-30
A7KAL9	118	Autophagy-related protein	yes	no	0.858	0.720	0.755	2e-30
Q2UBH5	118	Autophagy-related protein	yes	no	0.858	0.720	0.755	2e-30

>sp|Q9LZZ9|ATG8G_ARATH Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   S K  IP  +   +YLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+
Sbjct: 33  IVEKSEKSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAM 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MSTIYDE K+EDGFLYVTYSGENTFG
Sbjct: 92  MSTIYDENKEEDGFLYVTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1

 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  IPT +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+
Sbjct: 33  IVEKAEKSDIPT-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGAL 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS++Y+EKKD+DGFLYVTYSGENTFG
Sbjct: 92  MSSVYEEKKDDDGFLYVTYSGENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S926|ATG8E_ARATH Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=2

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  +P  +   +YLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +
Sbjct: 34  IVEKAEKSEVPN-IDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGEL 92

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS++Y++KKDEDGFLY+TYSGENTFG
Sbjct: 93  MSSVYEDKKDEDGFLYITYSGENTFG 118

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6C794|ATG8_YARLI Autophagy-related protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG8 PE=3 SV=2

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC    K  IP  +   +YLVPADLTVGQFVYVIRKRIKLS+E+AIFIFVD+VLPPT A+
Sbjct: 32  ICEKVEKSDIP-VIDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAAL 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IY+E KDEDGFLYVTYSGENTFG
Sbjct: 91  MSSIYEEHKDEDGFLYVTYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P0CO54|ATG8_CRYNJ Autophagy-related protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IPT +   +YLVPADLTVGQFVYVIRKRIKL+ EKAIFIFVD++LPPT A+
Sbjct: 33  ICEKAEKSDIPT-IDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAAL 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IYDE KDEDGFLYV Y+ ENTFG
Sbjct: 92  MSSIYDEHKDEDGFLYVLYASENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CO55|ATG8_CRYNB Autophagy-related protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATG8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IPT +   +YLVPADLTVGQFVYVIRKRIKL+ EKAIFIFVD++LPPT A+
Sbjct: 33  ICEKAEKSDIPT-IDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAAL 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IYDE KDEDGFLYV Y+ ENTFG
Sbjct: 92  MSSIYDEHKDEDGFLYVLYASENTFG 117

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q0V3Y9|ATG8_PHANO Autophagy-related protein 8 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=ATG8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+
Sbjct: 32  ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAAL 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct: 91  MSSIYEEHKDEDGFLYITYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|Q8WZY7|ATG8_NEUCR Autophagy-related protein 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=atg-8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+
Sbjct: 32  ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAAL 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct: 91  MSSIYEEHKDEDGFLYITYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A7KAL9|ATG8_PENCW Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+
Sbjct: 32  ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAAL 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct: 91  MSSIYEEHKDEDGFLYITYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

>sp|Q2UBH5|ATG8_ASPOR Autophagy-related protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg8 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+
Sbjct: 32  ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAAL 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct: 91  MSSIYEEHKDEDGFLYITYSGENTFG 116

Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
409168205	122	autophagy 8c [Petunia x hybrida]	0.858	0.696	0.825	7e-33
351727823	122	uncharacterized protein LOC100499835 [Gl	0.858	0.696	0.813	2e-32
356540577	123	PREDICTED: autophagy-related protein 8f-	0.858	0.691	0.813	2e-32
356497149	123	PREDICTED: autophagy-related protein 8f-	0.858	0.691	0.813	3e-32
357476885	122	Autophagy-related protein 8f [Medicago t	0.858	0.696	0.813	3e-32
21615419	121	microtubule associated protein [Cicer ar	0.858	0.702	0.813	3e-32
388516607	122	unknown [Lotus japonicus]	0.858	0.696	0.813	3e-32
359806567	122	uncharacterized protein LOC100818620 [Gl	0.858	0.696	0.813	3e-32
350540670	122	autophagy 8f [Solanum lycopersicum] gi|3	0.858	0.696	0.802	4e-32
301601262	122	autophagy 8 [Ipomoea nil]	0.858	0.696	0.813	4e-32

>gi|409168205|dbj|BAM62966.1| autophagy 8c [Petunia x hybrida]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  IP  +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAEKSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSSIYDEKKDEDGFLYVTYSGENTFG 117

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727823|ref|NP_001236662.1| uncharacterized protein LOC100499835 [Glycine max] gi|255627035|gb|ACU13862.1| unknown [Glycine max]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS+IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSSIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540577|ref|XP_003538764.1| PREDICTED: autophagy-related protein 8f-like [Glycine max]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497149|ref|XP_003517425.1| PREDICTED: autophagy-related protein 8f-like [Glycine max]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476885|ref|XP_003608728.1| Autophagy-related protein 8f [Medicago truncatula] gi|355509783|gb|AES90925.1| Autophagy-related protein 8f [Medicago truncatula] gi|388516669|gb|AFK46396.1| unknown [Medicago truncatula]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21615419|emb|CAD33929.1| microtubule associated protein [Cicer arietinum]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516607|gb|AFK46365.1| unknown [Lotus japonicus]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806567|ref|NP_001241265.1| uncharacterized protein LOC100818620 [Glycine max] gi|255638500|gb|ACU19559.1| unknown [Glycine max]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 75/86 (87%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP+ +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPS-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540670|ref|NP_001234634.1| autophagy 8f [Solanum lycopersicum] gi|324029062|gb|ADY16678.1| autophagy 8f [Solanum lycopersicum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  IP  +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIF+DNVLPPTGAI
Sbjct: 33  IVEKAEKSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFIDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKD+DGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDDDGFLYVTYSGENTFG 117

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301601262|dbj|BAJ13303.1| autophagy 8 [Ipomoea nil]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + +  IP  +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI
Sbjct: 33  IVEKAERSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IYDEKKDEDGFLYVTYSGENTFG
Sbjct: 92  MSAIYDEKKDEDGFLYVTYSGENTFG 117

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2101816	121	ATG8G "AUTOPHAGY 8G" [Arabidop	0.858	0.702	0.802	1.4e-30
TAIR|locus:2130759	121	ATG8F "AT4G16520" [Arabidopsis	0.858	0.702	0.779	1.8e-30
TAIR|locus:2055537	122	ATG8E "AUTOPHAGY 8E" [Arabidop	0.696	0.565	0.869	1.6e-29
ASPGD|ASPL0000029812	118	atgH [Emericella nidulans (tax	0.858	0.720	0.755	9.1e-29
POMBASE|SPBP8B7.24c	121	atg8 "autophagy associated pro	0.696	0.570	0.826	1.3e-27
TAIR|locus:2058939	164	ATG8D [Arabidopsis thaliana (t	0.696	0.420	0.840	1.7e-27
TAIR|locus:2120618	137	APG8A "AT4G21980" [Arabidopsis	0.696	0.503	0.826	2.2e-27
TAIR|locus:2125791	122	ATG8B "AT4G04620" [Arabidopsis	0.696	0.565	0.811	2.8e-27
UNIPROTKB|Q51MW4	123	ATG8 "Autophagy-related protei	0.858	0.691	0.720	5.7e-27
CGD|CAF0006954	135	AUT7 [Candida albicans (taxid:	0.858	0.629	0.697	1.2e-26

TAIR|locus:2101816 ATG8G "AUTOPHAGY 8G" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/86 (80%), Positives = 74/86 (86%)

Query:    14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
             I   S K  IP  +   +YLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+
Sbjct:    33 IVEKSEKSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAM 91

Query:    74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
             MSTIYDE K+EDGFLYVTYSGENTFG
Sbjct:    92 MSTIYDENKEEDGFLYVTYSGENTFG 117

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 67/86 (77%), Positives = 75/86 (87%)

Query:    14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
             I   + K  IPT +   +YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+
Sbjct:    33 IVEKAEKSDIPT-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGAL 91

Query:    74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
             MS++Y+EKKD+DGFLYVTYSGENTFG
Sbjct:    92 MSSVYEEKKDDDGFLYVTYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/69 (86%), Positives = 68/69 (98%)

Query:    31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
             +YLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++Y++KKDEDGFLY+
Sbjct:    50 KYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYI 109

Query:    91 TYSGENTFG 99
             TYSGENTFG
Sbjct:   110 TYSGENTFG 118

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0016020 "membrane" evidence=IDA

ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 65/86 (75%), Positives = 71/86 (82%)

Query:    14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
             IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+
Sbjct:    32 ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAAL 90

Query:    74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
             MS+IY+E KDEDGFLY+TYSGENTFG
Sbjct:    91 MSSIYEEHKDEDGFLYITYSGENTFG 116

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0031386 "protein tag" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

POMBASE|SPBP8B7.24c atg8 "autophagy associated protein Atg8" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 57/69 (82%), Positives = 64/69 (92%)

Query:    31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
             +YLVP+DLTVGQFVYVIRKRIKLS EKAIFIF+D +LPPT A+MSTIY+E K EDGFLY+
Sbjct:    48 KYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYI 107

Query:    91 TYSGENTFG 99
             TYSGENTFG
Sbjct:   108 TYSGENTFG 116

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IC

GO:0032258 "CVT pathway" evidence=ISO

GO:0033110 "CVT vesicle membrane" evidence=IEA

TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 58/69 (84%), Positives = 64/69 (92%)

Query:    31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
             +YLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMS IY+E KDEDGFLY+
Sbjct:    93 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYM 152

Query:    91 TYSGENTFG 99
             +YSGENTFG
Sbjct:   153 SYSGENTFG 161

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/69 (82%), Positives = 63/69 (91%)

Query:    31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
             +YLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPPT A+MS IY+E KDEDGFLY+
Sbjct:    64 KYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYM 123

Query:    91 TYSGENTFG 99
             TYSGENTFG
Sbjct:   124 TYSGENTFG 132

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005775 "vacuolar lumen" evidence=NAS

GO:0009507 "chloroplast" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019779 "APG8 activating enzyme activity" evidence=ISS

GO:0019786 "APG8-specific protease activity" evidence=ISS

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query:    31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
             +YLVPADLT+GQFVYV+RKRIKL AEKAIF+FV N LPPT A+MS IY+E KDEDGFLY+
Sbjct:    49 KYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYM 108

Query:    91 TYSGENTFG 99
             TYSGENTFG
Sbjct:   109 TYSGENTFG 117

GO:0006914 "autophagy" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 62/86 (72%), Positives = 69/86 (80%)

Query:    14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
             IC    K  I T +   +YLVPADLTVGQFVYVIRKRIKLS EKAIFIFV + LPPT A+
Sbjct:    32 ICEKVEKSDIAT-IDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQDTLPPTAAL 90

Query:    74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
             MS+IY+  KDEDGFLY+TYSGENTFG
Sbjct:    91 MSSIYELHKDEDGFLYITYSGENTFG 116

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0016239 "positive regulation of macroautophagy" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

CGD|CAF0006954 AUT7 [Candida albicans (taxid:5476)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query:    14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
             IC       IP  +   +YLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++LPPT A+
Sbjct:    32 ICEKVENSDIPE-IDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAAL 90

Query:    74 MSTIYDEKKDEDGFLYVTYSGENTFG 99
             +STIY+E KDEDGFLYV YSGENTFG
Sbjct:    91 ISTIYEEHKDEDGFLYVLYSGENTFG 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A7E8H4	ATG8_SCLS1	No assigned EC number	0.7325	0.8585	0.6910	N/A	no
Q51MW4	ATG8_MAGO7	No assigned EC number	0.7209	0.8585	0.6910	N/A	no
P0CO55	ATG8_CRYNB	No assigned EC number	0.7325	0.8585	0.6746	N/A	no
P0CO54	ATG8_CRYNJ	No assigned EC number	0.7325	0.8585	0.6746	yes	no
Q6BT31	ATG8_DEBHA	No assigned EC number	0.7971	0.6969	0.5073	yes	no
Q755X2	ATG8_ASHGO	No assigned EC number	0.6860	0.8585	0.7083	yes	no
Q4P2U6	ATG8_USTMA	No assigned EC number	0.7209	0.8585	0.7203	N/A	no
Q8J282	ATG8_PODAS	No assigned EC number	0.7558	0.8585	0.7024	yes	no
Q8NJJ4	ATG8_PICPA	No assigned EC number	0.6860	0.8585	0.68	yes	no
A6RPU4	ATG8_BOTFB	No assigned EC number	0.7325	0.8585	0.6910	N/A	no
Q9LZZ9	ATG8G_ARATH	No assigned EC number	0.8023	0.8585	0.7024	yes	no
A6ZKM4	ATG8_YEAS7	No assigned EC number	0.7093	0.8585	0.7264	N/A	no
Q1E4K5	ATG8_COCIM	No assigned EC number	0.7441	0.8585	0.7264	N/A	no
O94272	ATG8_SCHPO	No assigned EC number	0.7093	0.8585	0.7024	yes	no
A1D3N4	ATG8_NEOFI	No assigned EC number	0.7558	0.8585	0.7203	N/A	no
Q4WJ27	ATG8_ASPFU	No assigned EC number	0.7558	0.8585	0.7203	yes	no
A2YS06	ATG8C_ORYSI	No assigned EC number	0.7209	0.8585	0.7083	N/A	no
Q6CMF8	ATG8_KLULA	No assigned EC number	0.6860	0.8585	0.6854	yes	no
Q6Z1D5	ATG8C_ORYSJ	No assigned EC number	0.7209	0.8585	0.7083	yes	no
A1CQS1	ATG8_ASPCL	No assigned EC number	0.7558	0.8585	0.7203	N/A	no
Q7XPR1	ATG8B_ORYSJ	No assigned EC number	0.7093	0.8585	0.7142	yes	no
Q5B2U9	ATG8_EMENI	No assigned EC number	0.7558	0.8585	0.7203	yes	no
Q8H715	ATG8_PHYIN	No assigned EC number	0.7209	0.8585	0.7327	N/A	no
Q6FXR8	ATG8_CANGA	No assigned EC number	0.6860	0.8585	0.7203	yes	no
A2QPN1	ATG8_ASPNC	No assigned EC number	0.7558	0.8585	0.7203	yes	no
A2XXR7	ATG8B_ORYSI	No assigned EC number	0.7093	0.8585	0.7142	N/A	no
Q0V3Y9	ATG8_PHANO	No assigned EC number	0.7558	0.8585	0.7142	N/A	no
Q8WZY7	ATG8_NEUCR	No assigned EC number	0.7558	0.8585	0.7024	N/A	no
A3GFU8	ATG8_PICST	No assigned EC number	0.6860	0.8585	0.6115	yes	no
Q2UBH5	ATG8_ASPOR	No assigned EC number	0.7558	0.8585	0.7203	yes	no
P38182	ATG8_YEAST	No assigned EC number	0.7093	0.8585	0.7264	yes	no
Q2GVL1	ATG8_CHAGB	No assigned EC number	0.7441	0.8585	0.7024	N/A	no
Q6C794	ATG8_YARLI	No assigned EC number	0.7558	0.8585	0.6854	yes	no
Q0C804	ATG8_ASPTN	No assigned EC number	0.7558	0.8585	0.7203	N/A	no
A4LA70	ATG8_COLLN	No assigned EC number	0.7558	0.8585	0.7024	N/A	no
A7KAL9	ATG8_PENCW	No assigned EC number	0.7558	0.8585	0.7203	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
cd01611	112	cd01611, GABARAP, Ubiquitin domain of GABA-recepto	1e-42
pfam02991	104	pfam02991, Atg8, Autophagy protein Atg8 ubiquitin	6e-41
PTZ00380	121	PTZ00380, PTZ00380, microtubule-associated protein	6e-06

>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein

 Score =  134 bits (339), Expect = 1e-42
 Identities = 50/70 (71%), Positives = 60/70 (85%)

Query: 30  CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLY 89
            +YLVP+DLTVGQFVY+IRKRI+L  EKA+F+FV+N LPPT A MS +Y+E KDEDGFLY
Sbjct: 43  KKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLY 102

Query: 90  VTYSGENTFG 99
           +TYS E TFG
Sbjct: 103 MTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112

>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like

 Score =  129 bits (327), Expect = 6e-41
 Identities = 52/70 (74%), Positives = 62/70 (88%)

Query: 30  CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLY 89
            +YLVPADLTVGQF+Y+IRKRI+L  EKAIF+FV+N LPPT A MS +Y+E+KDEDGFLY
Sbjct: 35  KKYLVPADLTVGQFIYIIRKRIQLRPEKAIFLFVNNTLPPTSATMSALYEEEKDEDGFLY 94

Query: 90  VTYSGENTFG 99
           + YSGENTFG
Sbjct: 95  MVYSGENTFG 104

Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. Length = 104

>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 34  VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS 93
           +P D TV +    +R+ +  SA+K + + ++   P   A +  I D  K +DGFLYV+  
Sbjct: 47  LPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105

Query: 94  GENTFG 99
            E   G
Sbjct: 106 TEQAMG 111

Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	100.0
KOG1654	116	consensus Microtubule-associated anchor protein in	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
PTZ00380	121	microtubule-associated protein (MAP); Provisional	100.0
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	99.89
KOG3439	116	consensus Protein conjugation factor involved in a	99.89
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	95.92
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	95.64
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.45
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	91.6
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	90.3
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	90.19
KOG2660	331	consensus Locus-specific chromosome binding protei	89.63
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	87.21
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	86.99
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	86.93
PF13019	162	Telomere_Sde2: Telomere stability and silencing	86.05
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	83.65
KOG2976	278	consensus Protein involved in autophagy and nutrie	82.77
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	82.59
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	82.48
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	82.03
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	81.29

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=100.00  E-value=7.4e-47  Score=254.87  Aligned_cols=97  Identities=51%  Similarity=0.818  Sum_probs=87.2

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ |||||||++++++|+|| |+|||||.++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus         7 ~~ir~kyP~~IPVIvEr~~~s~lp~ld-k~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~   85 (104)
T PF02991_consen    7 ERIREKYPDKIPVIVERYPKSKLPDLD-KKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEK   85 (104)
T ss_dssp             HHHHHHSTTEEEEEEEE-TTSSS---S-SSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHH
T ss_pred             HHHHHHCCCccEEEEEEccCCChhhcC-ccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHH
Confidence            457899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+|+|||
T Consensus        86 ~kdeDGFLY~~Ys~e~tFG  104 (104)
T PF02991_consen   86 YKDEDGFLYMTYSSEETFG  104 (104)
T ss_dssp             HB-TTSSEEEEEESSSSBC
T ss_pred             hCCCCCeEEEEeccccccC
Confidence            9999999999999999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=100.00  E-value=1.8e-46  Score=254.42  Aligned_cols=97  Identities=56%  Similarity=0.865  Sum_probs=95.0

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ ||||||+++++++|.|| |+|||||.++|||||+.+||+||+|++++|+||||||.+|+++++|++||++
T Consensus        19 ~~Ir~kyP~riPVIvEk~~~~~lp~lD-K~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~~Ye~   97 (116)
T KOG1654|consen   19 RRIREKYPDRIPVIVEKAGKSQLPDLD-KKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSALYEE   97 (116)
T ss_pred             HHHHHHCCCCCcEEEEecccccCcccc-cceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHHHHHh
Confidence            358999999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      +||+||||||+||+|+|||
T Consensus        98 ~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   98 EKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             hcccCcEEEEEeccccccC
Confidence            9999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=2.9e-45  Score=249.82  Aligned_cols=97  Identities=57%  Similarity=0.885  Sum_probs=95.0

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ ||||||+++++++|.|| ++|||||+++||+||+.+||++|+|++++||||||||++|+++++||+||++
T Consensus        15 ~~ir~kyp~~iPVIvE~~~~~~~p~l~-k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~   93 (112)
T cd01611          15 ERIRAKYPDRIPVIVERYPKSDLPDLD-KKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEE   93 (112)
T ss_pred             HHHHHHCCCceEEEEEEcCCCCccccc-CceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHH
Confidence            357899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+++|||
T Consensus        94 ~kd~DGfLyl~Ys~~~tfG  112 (112)
T cd01611          94 HKDEDGFLYMTYSSEETFG  112 (112)
T ss_pred             hCCCCCEEEEEEeccccCC
Confidence            9999999999999999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=100.00  E-value=1.7e-42  Score=238.93  Aligned_cols=92  Identities=25%  Similarity=0.377  Sum_probs=88.7

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeE-EecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYD   79 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kf-lvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~   79 (99)
                      +.+++|||+ |||||||+++++    + |+|| |||+|+||+||+.+||+||+|++++ +||||||++|+++++||+||+
T Consensus        18 ~~Ir~kyPdrIPVIvEk~~~s~----d-K~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~lYe   91 (121)
T PTZ00380         18 ARLQAKYPGHVAVVVEAAEKAG----S-KVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDIAD   91 (121)
T ss_pred             HHHHHHCCCccEEEEeecCCCC----C-ceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHHHH
Confidence            468899999 999999999988    7 9999 6999999999999999999999999 999999999999999999999


Q ss_pred             hhcCCCCeEEEEecCcccCC
Q 034290           80 EKKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        80 ~~kd~DGfLYl~Ys~~~~fG   99 (99)
                      +|||+||||||+||+|+|||
T Consensus        92 ~~KDeDGFLYi~Ys~e~tFG  111 (121)
T PTZ00380         92 ACKRDDGFLYVSVRTEQAMG  111 (121)
T ss_pred             HhcCCCCeEEEEEccccccc
Confidence            99999999999999999999

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=4.2e-34  Score=187.33  Aligned_cols=84  Identities=21%  Similarity=0.338  Sum_probs=78.7

Q ss_pred             EEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           14 ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        14 IvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      .|---+-+++|.|+ ++||+||+++||++|+.+||+||++++++||||||||+ +|++|++||+||++| |+||||||+|
T Consensus         3 ~i~~~~~g~~p~l~-k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y   80 (87)
T cd01612           3 TIRFKPIGSAPILK-QKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY   80 (87)
T ss_pred             EEEEEECCCCcccc-ccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence            33334668899999 99999999999999999999999999999999999997 899999999999999 8999999999


Q ss_pred             cCcccCC
Q 034290           93 SGENTFG   99 (99)
Q Consensus        93 s~~~~fG   99 (99)
                      |+++|||
T Consensus        81 s~~~afG   87 (87)
T cd01612          81 CKTVAFG   87 (87)
T ss_pred             eCccccC
Confidence            9999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.89  E-value=1.4e-23  Score=137.68  Aligned_cols=79  Identities=22%  Similarity=0.413  Sum_probs=57.9

Q ss_pred             CCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcC-ccCCCCchHHHHHhhhcCCCCeEEEEecCccc
Q 034290           19 HKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENT   97 (99)
Q Consensus        19 ~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~~~   97 (99)
                      +-+++|.|+ ++||.|.++.|++.++.+|||+|+++++++||+|||| .+|++|+++|+||+||+ .||-|.++||.++|
T Consensus         8 ~iG~aPilk-~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~A   85 (87)
T PF04110_consen    8 AIGSAPILK-QKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTPA   85 (87)
T ss_dssp             EETT----S---EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS-
T ss_pred             ecCCCcccc-CcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEecccc
Confidence            335799999 9999999999999999999999999999999999998 58999999999999997 79999999999999


Q ss_pred             CC
Q 034290           98 FG   99 (99)
Q Consensus        98 fG   99 (99)
                      ||
T Consensus        86 ~G   87 (87)
T PF04110_consen   86 WG   87 (87)
T ss_dssp             --
T ss_pred             cC
Confidence            99

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=8.6e-23  Score=138.81  Aligned_cols=77  Identities=22%  Similarity=0.421  Sum_probs=74.2

Q ss_pred             CCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEEecCcccCC
Q 034290           21 FYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        21 ~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~~~fG   99 (99)
                      +++|.|+ ++||.|+++.||+.++.+|||+|+|+++++|||||||+ +|++|+.+|+||+||+ .||.|.++||...|||
T Consensus        39 G~~PilK-~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lvl~Yc~s~A~G  116 (116)
T KOG3439|consen   39 GDAPILK-KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLVLNYCISVAWG  116 (116)
T ss_pred             CCCccee-cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEEEEEeeecccC
Confidence            6799999 99999999999999999999999999999999999995 8999999999999995 6889999999999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.92  E-value=0.017  Score=42.51  Aligned_cols=85  Identities=11%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             cCCCceEEEEEecCCCCCCcccceeeEEec---CCCchHHHHHHHHHhh--ccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            6 MGIPFFLFICMNSHKFYIPTCLQCCRYLVP---ADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         6 ~~~p~ipVIvE~~~~~~lp~l~~k~Kflvp---~~~tv~~f~~~irk~l--~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      .++-.|||.+-....  .|.+. ..--...   ...|+++++..+=--+  .-+......+++++..++.++.|..||+.
T Consensus       106 ~~~r~IPiRiy~~~~--~~~iQ-~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~iihGI~ipldtpl~~l~~~  182 (197)
T PF04106_consen  106 SKFRHIPIRIYLPGS--VPVIQ-PPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVIIHGIEIPLDTPLQWLYEN  182 (197)
T ss_dssp             SS-SB--EEEEE-SS----EE-----B----TT---BTGGGHHHHHTTT--T------EEEEETTEEE-TTSBHHHHHHH
T ss_pred             CCcceeEEEEEeCCC--cceEe-cccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEEeCeeCCCCCcHHHHHHH
Confidence            344459999877544  22232 2211111   2347777655442221  11234556788889888889999999999


Q ss_pred             hcCCCCeEEEEec
Q 034290           81 KKDEDGFLYVTYS   93 (99)
Q Consensus        81 ~kd~DGfLYl~Ys   93 (99)
                      ++..||||||.-+
T Consensus       183 l~~~D~FLhivv~  195 (197)
T PF04106_consen  183 LSYPDGFLHIVVR  195 (197)
T ss_dssp             H--TTS-EEEEEE
T ss_pred             ccCCCCeEEEEEE
Confidence            9999999999753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=95.64  E-value=0.15  Score=40.14  Aligned_cols=87  Identities=16%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             CCCceEEEEEecCCCCCCccccee-----------------eEEecCCCchHHHHHHHHHhh--------------ccCc
Q 034290            7 GIPFFLFICMNSHKFYIPTCLQCC-----------------RYLVPADLTVGQFVYVIRKRI--------------KLSA   55 (99)
Q Consensus         7 ~~p~ipVIvE~~~~~~lp~l~~k~-----------------Kflvp~~~tv~~f~~~irk~l--------------~l~~   55 (99)
                      .+|.|..++..++.+..|.+. ..                 |.-.|.-+.|.-+...|-.|+              .+.+
T Consensus       211 e~~Ki~F~L~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p  289 (331)
T PF11816_consen  211 EPPKISFVLQPWDGSLPPNLK-PDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKP  289 (331)
T ss_pred             CCCeeEEEEeecCCCCccccC-CCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCC
Confidence            566789999998855544444 43                 888999999999999999999              4578


Q ss_pred             cceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290           56 EKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG   94 (99)
Q Consensus        56 ~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~   94 (99)
                      ++.|=|+||+.+.++++||+.|=.-+=-..|-|.|.|..
T Consensus       290 ~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  290 EEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             CceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence            899999999998888999999988843457789999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.45  E-value=0.13  Score=31.07  Aligned_cols=49  Identities=12%  Similarity=0.153  Sum_probs=39.7

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ..+|.|.++.+++.++...+++.++++.+++-|+.++....++.|++++
T Consensus        12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen   12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            6678899999999999999999999996778788887655666777765

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=91.60  E-value=0.8  Score=29.66  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=40.6

Q ss_pred             EecCCCchHHHHHHHHHhhccCccceEEEEEcC-----ccCCCCchHHHHHhhhcCCCCeE
Q 034290           33 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-----VLPPTGAIMSTIYDEKKDEDGFL   88 (99)
Q Consensus        33 lvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn-----~lp~~~~~m~~lY~~~kd~DGfL   88 (99)
                      -||.+.+++|+...|++||++++ +.+.|.--.     ..|-.++.|...+.+=+  ||-|
T Consensus        16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~l   73 (80)
T cd06406          16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCL   73 (80)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeE
Confidence            38999999999999999999984 557775532     23557888999888876  5544

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=90.30  E-value=0.71  Score=27.39  Aligned_cols=47  Identities=15%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      -.+-|+.+.||+++...|..+.++++++ +-|+.++.....+.+|+++
T Consensus         8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~   54 (69)
T PF00240_consen    8 FTLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY   54 (69)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred             EEEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence            3456999999999999999999988776 5666677755888888775

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>smart00213 UBQ Ubiquitin homologues

Probab=90.19  E-value=1.2  Score=25.49  Aligned_cols=47  Identities=11%  Similarity=0.049  Sum_probs=35.1

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      ...+-|+.+.|++++...|.++.+++++. +=|..++.....+.++++
T Consensus        11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~   57 (64)
T smart00213       11 TITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD   57 (64)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence            34456999999999999999999998764 445567665555666654

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=89.63  E-value=0.55  Score=37.59  Aligned_cols=66  Identities=24%  Similarity=0.243  Sum_probs=56.4

Q ss_pred             eeEE-ecCCCchHHHHHHHHHhhc-cCccceEEEEEcCccCCCCchHHHHHhhhcC--CCCeEEEEecCc
Q 034290           30 CRYL-VPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD--EDGFLYVTYSGE   95 (99)
Q Consensus        30 ~Kfl-vp~~~tv~~f~~~irk~l~-l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd--~DGfLYl~Ys~~   95 (99)
                      ++|+ ++...|+.++..++|+++. ++....+=+++|+.+..-+.||.++.--+..  .||=|-+.|+-.
T Consensus       165 ~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~  234 (331)
T KOG2660|consen  165 RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVK  234 (331)
T ss_pred             cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEeccc
Confidence            4777 8999999999999999998 7776677788898888999999998887766  499999999843

>cd00196 UBQ Ubiquitin-like proteins

Probab=87.21  E-value=3  Score=21.94  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCcc
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL   67 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~l   67 (99)
                      ...+.++.+.|++++...|.++.+.++ +...|++|...
T Consensus         9 ~~~~~~~~~~tv~~l~~~i~~~~~~~~-~~~~l~~~~~~   46 (69)
T cd00196           9 TVELLVPSGTTVADLKEKLAKKLGLPP-EQQRLLVNGKI   46 (69)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHCcCh-HHeEEEECCeE
Confidence            667888999999999999999988544 44667777643

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=86.99  E-value=3.3  Score=26.54  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             CcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC
Q 034290           24 PTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD   83 (99)
Q Consensus        24 p~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd   83 (99)
                      |.+- -+.+-||++..+..++.+--...++++.++.-+--++.--.+.++-|+++-+|..
T Consensus        13 p~~p-~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen   13 PKLP-YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             STS--EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             CCCc-ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            4555 7788999999999999999999999999884443334567888999999999964

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=86.93  E-value=6.8  Score=25.85  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             CCCcccceeeEEecCCCchHHHHHHHHHhh-ccCccceEEEEEcCccCCCCchHHHHHhhh---------cCCCC----e
Q 034290           22 YIPTCLQCCRYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSTIYDEK---------KDEDG----F   87 (99)
Q Consensus        22 ~lp~l~~k~Kflvp~~~tv~~f~~~irk~l-~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~---------kd~DG----f   87 (99)
                      .+|+|. =. +--|.+.|+.++...||.++ .-.++..|=|.-++.+.+.++.++..-...         |..++    -
T Consensus        10 sipDl~-L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~~~~~~~~~gk~~~~~~~~~   87 (97)
T PF10302_consen   10 SIPDLP-LD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLPTARSSKGKGKAPERQEAPR   87 (97)
T ss_pred             CCCCce-ee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccccccCccccCcCccCCCCCe
Confidence            677765 10 01348899999999999998 455667776666776655556555554444         22333    7


Q ss_pred             EEEEecC
Q 034290           88 LYVTYSG   94 (99)
Q Consensus        88 LYl~Ys~   94 (99)
                      .||+.+.
T Consensus        88 ~yIhCsI   94 (97)
T PF10302_consen   88 IYIHCSI   94 (97)
T ss_pred             EEEEEec
Confidence            7777653

They contain a characteristic GFDRL sequence motif.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=86.05  E-value=3.4  Score=30.01  Aligned_cols=63  Identities=16%  Similarity=0.382  Sum_probs=48.4

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEc-C-cc-CCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N-VL-PPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vn-n-~l-p~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ..-+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+.+..
T Consensus        16 tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~~l~l   81 (162)
T PF13019_consen   16 TLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFITLRL   81 (162)
T ss_pred             eEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-CceEEEE
Confidence            334669999999999999999999988877888886 4 44 56777888888776543 5766654

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=83.65  E-value=5  Score=25.40  Aligned_cols=48  Identities=13%  Similarity=0.147  Sum_probs=38.0

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|-|.++.+++.++..+..+.++++++--|+| ++.....+.|++++
T Consensus        23 ~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G~~L~~~~T~~~l   70 (87)
T cd01763          23 EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DGQRIRDNQTPDDL   70 (87)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CCeECCCCCCHHHc
Confidence            5678899999999999999999999987655655 55545556677766

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]

Probab=82.77  E-value=6.4  Score=30.81  Aligned_cols=32  Identities=19%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             EEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           61 IFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        61 l~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      +.+.+--++..+.+..+|+.....||||||+.
T Consensus       242 viihGIei~l~tpL~~l~~~L~ypD~FLHI~l  273 (278)
T KOG2976|consen  242 VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL  273 (278)
T ss_pred             eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence            34444457788899999999999999999975

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=82.59  E-value=3.1  Score=25.29  Aligned_cols=45  Identities=9%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      .+=|+.+.||+++...|..+-++++++ .-|+.++.....+.++++
T Consensus        14 ~l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~   58 (74)
T cd01807          14 SLQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSD   58 (74)
T ss_pred             EEEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHH
Confidence            345889999999999999999998754 456677776666677754

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=82.48  E-value=3.2  Score=24.87  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=36.2

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      .+-|+++.|++++...|-.+.++++++ .-|+.++.....+.++++
T Consensus        12 ~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~~G~~L~d~~~l~~   56 (70)
T cd01798          12 PVEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIFAGKELRNTTTIQE   56 (70)
T ss_pred             EEEECCCChHHHHHHHHHHHHCCCHHH-eEEEECCeECCCCCcHHH
Confidence            345889999999999999999997754 566677766677788887

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=82.03  E-value=6.1  Score=23.49  Aligned_cols=59  Identities=10%  Similarity=0.072  Sum_probs=41.2

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCC-eEEEEec
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTYS   93 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fLYl~Ys   93 (99)
                      ..+-|+++.||+++...|..+.++++++--.+ .++.....+.++++.    .-.|| .|++...
T Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~----~i~~g~~i~l~~~   72 (76)
T cd01806          13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADY----KLEGGSVLHLVLA   72 (76)
T ss_pred             EEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHc----CCCCCCEEEEEEE
Confidence            34568999999999999999999988753333 566555667777663    33344 6776654

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=81.29  E-value=3.3  Score=25.64  Aligned_cols=45  Identities=13%  Similarity=0.077  Sum_probs=36.2

Q ss_pred             EecCCCchHHHHHHHHHhhccCccceEEEE--EcCccCCCCchHHHH
Q 034290           33 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSTI   77 (99)
Q Consensus        33 lvp~~~tv~~f~~~irk~l~l~~~~slfl~--Vnn~lp~~~~~m~~l   77 (99)
                      =|+.+.|+++|...|..+.+++++.-=.+|  +.+.++..+.+++++
T Consensus        15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~   61 (74)
T cd01813          15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL   61 (74)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence            388899999999999999999987555555  456677788888876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
3rui_B	118	Crystal Structure Of Atg7c-Atg8 Complex Length = 11		4e-29
2kwc_A	116	The Nmr Structure Of The Autophagy-Related Protein		4e-29
2kq7_A	119	Solution Structure Of The Autophagy-Related Protein		4e-29
2zpn_A	119	The Crystal Structure Of Saccharomyces Cerevisiae A		4e-29
2li5_A	117	Nmr Structure Of Atg8-Atg7c30 Complex Length = 117		5e-29
3vh3_B	119	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		5e-29
1eo6_A	117	Crystal Structure Of Gate-16 Length = 117		8e-23
3h9d_A	119	Crystal Structure Of Trypanosoma Brucei Atg8 Length		3e-21
3m95_A	125	Crystal Structure Of Autophagy-Related Protein Atg8		1e-20
1gnu_A	117	Gaba(a) Receptor Associated Protein Gabarap Length		3e-20
1kjt_A	119	Crystal Structure Of The Gaba(A) Receptor Associate		3e-20
1kot_A	119	Solution Structure Of Human Gaba Receptor Associate		3e-20
2l8j_A	119	Gabarapl-1 Nbr1-Lir Complex Structure Length = 119		3e-18
2r2q_A	110	Crystal Structure Of Human Gamma-Aminobutyric Acid		2e-17
4eoy_A	128	Plasmodium Falciparum Atg8 In Complex With Plasmodi		2e-13
3vvw_B	128	Ndp52 In Complex With Lc3c Length = 128		1e-12
1v49_A	120	Solution Structure Of Microtubule-Associated Protei		5e-11
2zjd_A	130	Crystal Structure Of Lc3-P62 Complex Length = 130		5e-11
2k6q_A	121	Lc3 P62 Complex Structure Length = 121		9e-11
2z0e_B	129	The Crystal Structure Of Human Atg4b- Lc3(1-124) Co		1e-10
1ugm_A	125	Crystal Structure Of Lc3 Length = 125		1e-10
3eci_A	122	Microtubule-Associated Protein 1 Light Chain 3 Alph		3e-10

>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 34  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 93  MSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 32  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 90
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 91  MSAIYQEHKDKDGFLYVTYSGENTFG 116

>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 34  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 92
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 93  MSAIYQEHKDKDGFLYVTYSGENTFG 118

>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 35  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 94  MSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 33  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 91
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 92  MSAIYQEHKDKDGFLYVTYSGENTFG 117

>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           IC  + K  IP  +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+
Sbjct: 35  ICEKAEKSDIPE-IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAAL 93
Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 94  MSAIYQEHKDKDGFLYVTYSGENTFG 119

>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117

Iteration: 1
 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 58/69 (84%)
Query: 31  RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYV 90
           +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   M  +Y+++KDEDGFLYV
Sbjct: 48  KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYV 107
Query: 91  TYSGENTFG 99
            YSGENTFG
Sbjct: 108 AYSGENTFG 116

>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           L  C++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+ A M+ IY + KDEDG
Sbjct: 47  LDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDG 106
Query: 87  FLYVTYSGENTFG 99
           FLY+ YSGE TFG
Sbjct: 107 FLYMKYSGEATFG 119

>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           L   +YLVP+DLTVGQF ++IRKRI L  E A+F FV+NV+PPT A M ++Y E  DED 
Sbjct: 52  LDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDF 111
Query: 87  FLYVTYSGENTFG 99
           FLY+ +S EN +G
Sbjct: 112 FLYIAFSDENVYG 124

>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           L   +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED 
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 103
Query: 87  FLYVTYSGENTFG 99
           FLY+ YS E+ +G
Sbjct: 104 FLYIAYSDESVYG 116

>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           L   +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED 
Sbjct: 46  LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 105
Query: 87  FLYVTYSGENTFG 99
           FLY+ YS E+ +G
Sbjct: 106 FLYIAYSDESVYG 118

>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           L   +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A M  +Y E  +ED 
Sbjct: 46  LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 105
Query: 87  FLYVTYSGENTFG 99
           FLY+ YS E+ +G
Sbjct: 106 FLYIAYSDESVYG 118

>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  +P  L   +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A 
Sbjct: 36  IVEKAPKARVPD-LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 94
Query: 74  MSTIYDEKKDEDGFLYVTYSGEN 96
           M  +Y++  +ED FLYV YS E+
Sbjct: 95  MGQLYEDNHEEDYFLYVAYSDES 117

>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  +P  L   +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A 
Sbjct: 31  IVEKAPKARVPD-LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 89
Query: 74  MSTIYDEKKDEDGFLYVTYS 93
           M  +Y++  +ED FLYV YS
Sbjct: 90  MGQLYEDNHEEDYFLYVAYS 109

>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 9/83 (10%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSA---------EKAIFIFVDNVLPPTGAIMST 76
            ++  ++LVP ++ VG+F +++ + I  SA         E+ I++FV+N++P TG +M  
Sbjct: 46  IIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQD 105
Query: 77  IYDEKKDEDGFLYVTYSGENTFG 99
           +Y+  KDEDG+LY+ YS E++ G
Sbjct: 106 LYEMYKDEDGYLYMEYSSESSLG 128

>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDED 85
           L   ++LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY + KDED
Sbjct: 55  LDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDED 114
Query: 86  GFLYVTYSGENTFG 99
           GF+Y+TY+ + TFG
Sbjct: 115 GFVYMTYASQETFG 128

>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDE
Sbjct: 46  VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE 105
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 106 DGFLYMVYASQETFG 120

>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDE
Sbjct: 51  VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE 110
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125

>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ ++DE
Sbjct: 47  VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 106
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 107 DGFLYMVYASQETFG 121

>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ ++DE
Sbjct: 51  VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 110
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125

>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ ++DE
Sbjct: 51  VLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDE 110
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 111 DGFLYMVYASQETFG 125

>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 26  CLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDE 84
            L   ++LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IY+++KDE
Sbjct: 47  VLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDE 106
Query: 85  DGFLYVTYSGENTFG 99
           DGFLY+ Y+ + TFG
Sbjct: 107 DGFLYMVYASQETFG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3rui_B	118	Autophagy-related protein 8; autophagosome formati	2e-32
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	2e-31
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	5e-31
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	1e-30
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	5e-28
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	6e-28

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118

 Score =  108 bits (270), Expect = 2e-32
 Identities = 56/73 (76%), Positives = 62/73 (84%)

Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG 86
           +   +YLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+MS IY E KD+DG
Sbjct: 46  IDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDG 105

Query: 87  FLYVTYSGENTFG 99
           FLYVTYSGENTFG
Sbjct: 106 FLYVTYSGENTFG 118

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119

 Score =  106 bits (265), Expect = 2e-31
 Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 11  FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT 70
              IC   +   I   L  C++LVP+DLTVGQFV V+RKR++L AE A+F++ ++ + P+
Sbjct: 32  LPIICEKVYNSDIGE-LDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPS 90

Query: 71  GAIMSTIYDEKKDEDGFLYVTYSGENTFG 99
            A M+ IY + KDEDGFLY+ YSGE TFG
Sbjct: 91  SAQMADIYSKYKDEDGFLYMKYSGEATFG 119

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125

 Score =  105 bits (262), Expect = 5e-31
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  +   L   +YLVP+DLTVGQF ++IRKRI L  E A+F FV+NV+PPT A 
Sbjct: 40  IVEKAPKARLGD-LDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSAT 98

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           M ++Y E  DED FLY+ +S EN +G
Sbjct: 99  MGSLYQEHHDEDFFLYIAFSDENVYG 124

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117

 Score =  103 bits (259), Expect = 1e-30
 Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I        I   +   +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   
Sbjct: 32  IVEKVSGSQIVD-IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           M  +Y+++KDEDGFLYV YSGENTFG
Sbjct: 91  MGQLYEKEKDEDGFLYVAYSGENTFG 116

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110

 Score = 97.0 bits (241), Expect = 5e-28
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  +P  L   +YLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A 
Sbjct: 31  IVEKAPKARVPD-LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSAT 89

Query: 74  MSTIYDEKKDEDGFLYVTYS 93
           M  +Y++  +ED FLYV YS
Sbjct: 90  MGQLYEDNHEEDYFLYVAYS 109

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score = 97.5 bits (242), Expect = 6e-28
 Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDED 85
           L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDED
Sbjct: 52  LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDED 111

Query: 86  GFLYVTYSGENTFG 99
           GFLY+ Y+ + TFG
Sbjct: 112 GFLYMVYASQETFG 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	100.0
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	100.0
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	99.98
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	95.19
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	92.96
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	92.82
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	92.63
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	89.16
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	88.36
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	87.99
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	87.83
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	87.4
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	87.25
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	87.17
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	87.11
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	86.77
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	85.84
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	85.18
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	84.6
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	84.26
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	83.83
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	83.81
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	83.74
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	83.49
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	83.47
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	83.24
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	83.22
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	82.76
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	82.31
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	82.15
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	81.92
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	80.86
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	80.58
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	80.43
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	80.36
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	80.32

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=1.2e-46  Score=259.92  Aligned_cols=97  Identities=46%  Similarity=0.756  Sum_probs=94.2

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ |||||||++++++|.|| |+|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus        27 ~~ir~kyP~rIPVIvEr~~~s~lP~Ld-K~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~  105 (125)
T 3m95_A           27 EKIRRKYPDRVPVIVEKAPKARLGDLD-KKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQE  105 (125)
T ss_dssp             HHHHHHCTTEEEEEEEECTTCSSCCCS-CCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred             HHHHHHCCCeEEEEEEecCCCCCcccc-CCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHH
Confidence            457899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+++|||
T Consensus       106 ~kdeDGfLY~~Ys~e~tfG  124 (125)
T 3m95_A          106 HHDEDFFLYIAFSDENVYG  124 (125)
T ss_dssp             HCCTTSCEEEEEESSSCC-
T ss_pred             cCCCCCeEEEEecCccccC
Confidence            9999999999999999999

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=1.8e-46  Score=256.83  Aligned_cols=97  Identities=64%  Similarity=0.972  Sum_probs=95.0

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ ||||||+++++++|.|| |+|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus        21 ~~ir~kyP~riPVIvE~~~~~~~P~ld-k~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~   99 (118)
T 3rui_B           21 ERIADRFKNRIPVICEKAEKSDIPEID-KRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQE   99 (118)
T ss_dssp             HHHHHHCSSEEEEEEEECTTCCSCCCS-CCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHH
T ss_pred             HHHHHhCCCceEEEEEeCCCCCCCccc-cceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHH
Confidence            357899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+++|||
T Consensus       100 ~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B          100 HKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             HCCTTSCEEEEEEECCCBC
T ss_pred             cCCCCCeEEEEEeccccCC
Confidence            9999999999999999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=2.2e-46  Score=256.71  Aligned_cols=97  Identities=46%  Similarity=0.795  Sum_probs=93.2

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.+++|||+ ||||||+++++++|.|| ++|||||+++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus        22 ~~ir~kyP~rIPVIvEr~~~~~~P~Ld-k~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~  100 (119)
T 3h9d_A           22 AKVRERHPDRLPIICEKVYNSDIGELD-RCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSK  100 (119)
T ss_dssp             HHHHHHSTTEEEEEEEECTTSSCCCCS-SCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHH
T ss_pred             HHHHHHCCCeEEEEEEecCCCCCCccC-cceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHH
Confidence            457899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+++|||
T Consensus       101 ~kd~DGfLyv~Ys~e~~fG  119 (119)
T 3h9d_A          101 YKDEDGFLYMKYSGEATFG  119 (119)
T ss_dssp             HCCTTSCEEEEEECC-CC-
T ss_pred             cCCCCCeEEEEEecccccC
Confidence            9999999999999999999

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=100.00  E-value=1.5e-43  Score=241.62  Aligned_cols=97  Identities=47%  Similarity=0.779  Sum_probs=94.8

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.++++||+ ||||||+++++++|.|+ ++||+||.++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus        19 ~~ir~kyP~~IPVIve~~~~s~~p~l~-k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~   97 (117)
T 1eo6_A           19 AKIRAKYPDRVPVIVEKVSGSQIVDID-KRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEK   97 (117)
T ss_dssp             HHHHHHCTTEEEEEEEECTTCSSCCCS-CCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred             HHHHHHCCCeEEEEEEecCCCCCCccc-ceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHH
Confidence            357899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+++|||
T Consensus        98 ~kd~DGfLyi~Ys~~~~fG  116 (117)
T 1eo6_A           98 EKDEDGFLYVAYSGENTFG  116 (117)
T ss_dssp             HCCTTSCEEEEEECCCCCC
T ss_pred             hCCCCCEEEEEEeCCccCC
Confidence            9999999999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=100.00  E-value=5e-44  Score=248.20  Aligned_cols=97  Identities=28%  Similarity=0.546  Sum_probs=94.7

Q ss_pred             cccccCCCc-eEEEEEecCCCC-CCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEE-EEcCccCCCCchHHHHH
Q 034290            2 ETATMGIPF-FLFICMNSHKFY-IPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSTIY   78 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~-lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl-~Vnn~lp~~~~~m~~lY   78 (99)
                      +.+++|||+ ||||||++++++ +|.|| |+|||||+++||+||+.+||+||+|++++|||| ||||++|+++++||+||
T Consensus        26 ~~ir~kyP~kIPVIvEk~~~s~~~P~Ld-k~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY  104 (130)
T 2zjd_A           26 RLIREQHPTKIPVIIERYKGEKQLPVLD-KTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVY  104 (130)
T ss_dssp             HHHHHHCTTEEEEEEEECTTCCSSCCCS-CCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHH
T ss_pred             HHHHHhCCCceEEEEEEcCCCCcCcccc-ccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHH
Confidence            457899999 999999999999 99999 999999999999999999999999999999999 99999999999999999


Q ss_pred             hhhcCCCCeEEEEecCcccCC
Q 034290           79 DEKKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        79 ~~~kd~DGfLYl~Ys~~~~fG   99 (99)
                      ++|||+||||||+||+++|||
T Consensus       105 ~~~kdeDGfLyv~Ys~e~tfG  125 (130)
T 2zjd_A          105 ESEKDEDGFLYMVYASQETFG  125 (130)
T ss_dssp             HHHCCTTSCEEEEEEEHHHHH
T ss_pred             HHhCCCCCEEEEEEeCCcccC
Confidence            999999999999999999998

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=100.00  E-value=6.8e-40  Score=221.29  Aligned_cols=92  Identities=46%  Similarity=0.759  Sum_probs=89.3

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.++++||+ ||||||+++++++|.|+ ++||+||.++||+||+.+||++|+|++++||||||||++|+++++||+||++
T Consensus        18 ~~ir~k~p~~IPVive~~~~~~~p~l~-k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~   96 (110)
T 2r2q_A           18 EKIRKKYPDRVPVIVEKAPKARVPDLD-KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYED   96 (110)
T ss_dssp             HHHHHHCTTEEEEEEEECTTCCSCCCS-CCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred             HHHHHhCCCceEEEEEecCCCCCCccc-eeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHH
Confidence            357899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecC
Q 034290           81 KKDEDGFLYVTYSG   94 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~   94 (99)
                      |||+||||||+||+
T Consensus        97 ~kd~DGfLyi~Ys~  110 (110)
T 2r2q_A           97 NHEEDYFLYVAYSD  110 (110)
T ss_dssp             HCCTTSCEEEEEEC
T ss_pred             cCCCCCEEEEEEeC
Confidence            99999999999985

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=2e-35  Score=194.13  Aligned_cols=85  Identities=22%  Similarity=0.340  Sum_probs=79.2

Q ss_pred             EEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEE
Q 034290           13 FICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVT   91 (99)
Q Consensus        13 VIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~   91 (99)
                      |+|--.+-+++|.|+ ++||+||+++||+||+.+||+||+|++++||||||||+ +|++|++||+||++|| +||||||+
T Consensus         6 v~v~fk~~g~~P~l~-k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~   83 (91)
T 4gdk_A            6 IDILLKAVGDTPIMK-TKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH   83 (91)
T ss_dssp             EEEEEEECSSSCCCS-CCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred             EEEEEEecCCCCccc-ccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence            444444568999999 99999999999999999999999999999999999996 7999999999999999 99999999


Q ss_pred             ecCcccCC
Q 034290           92 YSGENTFG   99 (99)
Q Consensus        92 Ys~~~~fG   99 (99)
                      ||+++|||
T Consensus        84 Ys~~~afG   91 (91)
T 4gdk_A           84 YCKSQAWG   91 (91)
T ss_dssp             EESSCCCC
T ss_pred             EeCccccC
Confidence            99999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=1.2e-33  Score=187.22  Aligned_cols=83  Identities=16%  Similarity=0.291  Sum_probs=77.7

Q ss_pred             ceEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcC-ccCCCCchHHHHHhhhcCCCCeE
Q 034290           10 FFLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGFL   88 (99)
Q Consensus        10 ~ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn-~lp~~~~~m~~lY~~~kd~DGfL   88 (99)
                      .|+|+++..  +++|.|+ |+||+||+++||++|+.+||+||+++   +||||||| .+|++|++|++||++||| ||||
T Consensus        13 KV~V~~~~~--~~~P~l~-k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGfL   85 (96)
T 1wz3_A           13 KIVVHLRAT--GGAPILK-QSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGKL   85 (96)
T ss_dssp             EEEEEEEEC--TTCCCCS-CCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTBE
T ss_pred             eEEEEEEEC--CCCCccc-ccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCEE
Confidence            388888775  5699999 99999999999999999999999998   99999999 799999999999999999 9999


Q ss_pred             EEEecCcccCC
Q 034290           89 YVTYSGENTFG   99 (99)
Q Consensus        89 Yl~Ys~~~~fG   99 (99)
                      ||+||+++|||
T Consensus        86 yi~Ys~~~afG   96 (96)
T 1wz3_A           86 VVNYACSMAWG   96 (96)
T ss_dssp             EEEEESCSCC-
T ss_pred             EEEEeCCcccC
Confidence            99999999999

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=99.98  E-value=1.2e-32  Score=180.95  Aligned_cols=82  Identities=13%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             EEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEE
Q 034290           13 FICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVT   91 (99)
Q Consensus        13 VIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~   91 (99)
                      |.|--.+-+++|.|+ ++||+||+++|+++|+.+||+||++   ++|||||||+ +|++|++||+||++|| +||||||+
T Consensus         9 v~vrfk~~g~~P~l~-k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~Lyv~   83 (91)
T 3w1s_C            9 IQIKFQPIGSIGQLK-PSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDELIVS   83 (91)
T ss_dssp             EEEEEEECCC--------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTEEEEE
T ss_pred             EEEEEEecCCCCccc-ccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCEEEEE
Confidence            344333557899999 9999999999999999999999999   7999999995 7999999999999999 79999999


Q ss_pred             ecCcccCC
Q 034290           92 YSGENTFG   99 (99)
Q Consensus        92 Ys~~~~fG   99 (99)
                      ||+++|||
T Consensus        84 Ys~~~afG   91 (91)
T 3w1s_C           84 YCASVAFG   91 (91)
T ss_dssp             EEC---CC
T ss_pred             EeCccccC
Confidence            99999999

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=95.19  E-value=0.061  Score=34.11  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=41.2

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      .-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-..+++++.+
T Consensus        21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D   68 (82)
T 3goe_A           21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS   68 (82)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred             CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence            667999999999999999999999999999999999875555555544

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=92.96  E-value=0.096  Score=39.92  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHhhc-cCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           39 TVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        39 tv~~f~~~irk~l~-l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      |+++++.- +..+. +-++.+..+.+++..++.++.+..||++++..||||||.-.
T Consensus       231 TLgd~L~~-~~~lp~lf~~~~~~viihGI~vpl~~pl~wl~~~l~~pDgFLhIvv~  285 (297)
T 2dyo_A          231 TLKDIEGD-ILDVKEGINGNDVMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLV  285 (297)
T ss_dssp             BTGGGHHH-HSCTTTC----CEEEEETTEEECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             CHHHHHhh-hhhccccCCCCCCeEEEeCccCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence            77765510 22221 22344468888898888999999999999999999999865

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=92.82  E-value=0.077  Score=40.05  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             CCCceEEEEEecCCCCCCcccceeeEEecC---CCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC
Q 034290            7 GIPFFLFICMNSHKFYIPTCLQCCRYLVPA---DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD   83 (99)
Q Consensus         7 ~~p~ipVIvE~~~~~~lp~l~~k~Kflvp~---~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd   83 (99)
                      ++-.|||.|-... +  |.+.    -+|+.   ..|+++++..   .+-- ......+++++..++.++.|.+||+++..
T Consensus       196 ~~r~IPiRIy~~~-~--~~iQ----~~i~~~~~~~TLg~~L~~---~lp~-l~~~~~~iihGi~vp~~~pl~~l~~~~~y  264 (274)
T 3vqi_A          196 KAKSLPVRVWTSN-Y--AVLQ----PTVPVTDKELSVAELLDS---IKLS-SDGVKSVIIQGIDVSIEDNIFELYDIFAS  264 (274)
T ss_dssp             GCSBCCEEEECTT-S--CEEC----CCCBCC---CBHHHHHHT---TTCC-C--CCEEEETTEEEETTSBHHHHHHHHCC
T ss_pred             cccceeEEEEcCC-C--CeEe----cccCCCCccccHHHHHHH---hccc-cccceEEEEeCccCCCCCcHHHHHHHccC
Confidence            3445999887632 2  2222    13443   6677776553   3320 01233467778788999999999999999


Q ss_pred             CCCeEEEE
Q 034290           84 EDGFLYVT   91 (99)
Q Consensus        84 ~DGfLYl~   91 (99)
                      .||||||.
T Consensus       265 ~DgFLhiv  272 (274)
T 3vqi_A          265 IDGFLYLV  272 (274)
T ss_dssp             TTSCEEEE
T ss_pred             CCceEEEE
Confidence            99999986

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=92.63  E-value=0.14  Score=38.74  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             CCCceEEEEEecCCCCCCcccceeeEEec------CCCchHHHHHHHHHhhc-c-C---ccceEEEEEcCccCCCCchHH
Q 034290            7 GIPFFLFICMNSHKFYIPTCLQCCRYLVP------ADLTVGQFVYVIRKRIK-L-S---AEKAIFIFVDNVLPPTGAIMS   75 (99)
Q Consensus         7 ~~p~ipVIvE~~~~~~lp~l~~k~Kflvp------~~~tv~~f~~~irk~l~-l-~---~~~slfl~Vnn~lp~~~~~m~   75 (99)
                      .+-.|||.|-.. .++-|.+. +   +|+      +..|+++.+..+   +- + +   ......+++++..++.++.|.
T Consensus       181 ~~r~IPvRiY~~-~~~~~~iQ-~---~v~p~~~~g~~~TLg~~L~~~---lP~lf~~~~~~~~~~viihGI~~pl~~pl~  252 (275)
T 4gdk_B          181 GFRYIPFRIYQT-TTERPFIQ-K---LFRPVAADGQLHTLGDLLKEV---CPSAIDPEDGEKKNQVMIHGIEPMLETPLQ  252 (275)
T ss_dssp             SCSSCCEEEECT-TSSSSEEC-C---CCCSBCTTSCBCBHHHHHHHH---CGGGCC------CEEEEBTTBCCCTTSBHH
T ss_pred             ccccceEEEEec-CCCCCccc-c---CcCCcCCCCCcccHHHHHHHh---cccccCCCcccccceEEEeCCcCCCCCCHH
Confidence            345599999642 12222222 1   111      235777765543   31 1 1   113455677787899999999


Q ss_pred             HHHhhhcCCCCeEEEEec
Q 034290           76 TIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        76 ~lY~~~kd~DGfLYl~Ys   93 (99)
                      +||++.+..||||||.-.
T Consensus       253 ~l~~~l~y~DgFLhI~v~  270 (275)
T 4gdk_B          253 WLSEHLSYPDNFLHISII  270 (275)
T ss_dssp             HHHHHSCCTTSCEEEEEE
T ss_pred             HHHHhccCCCceEEEEEE
Confidence            999999999999999754

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=89.16  E-value=1.3  Score=25.85  Aligned_cols=60  Identities=8%  Similarity=0.047  Sum_probs=42.2

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ...+-|.++.||+++...+..+.++++++--++ .++.....+.+++++-  - .++..|++..
T Consensus        15 ~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~--i-~~~~~i~l~~   74 (79)
T 2uyz_B           15 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELG--M-EEEDVIEVYQ   74 (79)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHT--C-CTTEEEEEEE
T ss_pred             EEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcC--C-CCCCEEEEEE
Confidence            345679999999999999999999998764444 4665556777887752  1 1233666654

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=88.36  E-value=1.3  Score=26.24  Aligned_cols=58  Identities=7%  Similarity=0.000  Sum_probs=41.7

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS   93 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys   93 (99)
                      .+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++.    .- ++..|++...
T Consensus        21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~i~l~~~   79 (87)
T 1wh3_A           21 AYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDTLILSKK   79 (87)
T ss_dssp             EEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEEEEEEEC
T ss_pred             EEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCEEEEEEe
Confidence            4568999999999999999999987653 444566655677788765    22 3346777654

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=87.99  E-value=1.7  Score=26.15  Aligned_cols=48  Identities=15%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|.|.++.+++.++...+++.++++++--|+| ++.....+.|.+++
T Consensus        20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l   67 (79)
T 3a4r_A           20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL   67 (79)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            3468899999999999999999999988655666 55555667788877

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=87.83  E-value=1.3  Score=25.17  Aligned_cols=59  Identities=5%  Similarity=-0.018  Sum_probs=41.4

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS   93 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys   93 (99)
                      ..+-|+.+.||+++...|.++.++++++ .-|+.++.....+.++++.    .- ++..+++...
T Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~   72 (76)
T 1ndd_A           13 IEIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA   72 (76)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence            3456899999999999999999998765 4455576655666677653    22 3446776653

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=87.40  E-value=1  Score=26.44  Aligned_cols=61  Identities=10%  Similarity=0.085  Sum_probs=42.5

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      ...+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++.  .- .++..|++...
T Consensus        15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r   75 (85)
T 3mtn_B           15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR   75 (85)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence            334568999999999999999999987653 344577666667777763  11 23446776543

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=87.25  E-value=1.1  Score=26.42  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=42.3

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      ..+-|+.+.||+++...|.++.++++++ .-|+.++.....+.+|++.  .- .++..|++...
T Consensus        16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~r   75 (85)
T 3n3k_B           16 IILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLK   75 (85)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTTT--TC-CTTCEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHHC--CC-CCCCEEEEEEe
Confidence            3456899999999999999999998865 4455577666667777763  11 23447777653

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=87.17  E-value=1.7  Score=25.97  Aligned_cols=56  Identities=9%  Similarity=0.042  Sum_probs=40.4

Q ss_pred             ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           34 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        34 vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      |+.+.||+++...|..+.++++++- -|+.++.....+.+|++.=  - .++..|++...
T Consensus        26 v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~gk~L~d~~tL~~~~--i-~~g~~i~l~~~   81 (89)
T 1wy8_A           26 VSRKATIEELRERVWALFDVRPECQ-RLFYRGKQLENGYTLFDYD--V-GLNDIIQLLVR   81 (89)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTE-EEEETTEECCSSSBHHHHT--C-CTTCEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHHHCcChhhE-EEEECCeECCCCCCHHHCC--C-CCCCEEEEEEe
Confidence            8999999999999999999987653 4445666556777887651  1 13447777654

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=87.11  E-value=1.4  Score=25.04  Aligned_cols=59  Identities=10%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS   93 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys   93 (99)
                      ..+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++.    .- ++..+++...
T Consensus        13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~   72 (76)
T 3a9j_A           13 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR   72 (76)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence            3456899999999999999999998765 4455566654556677653    22 3446776543

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=86.77  E-value=0.98  Score=30.25  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=41.6

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCc-cceEEEEEcC---c----cCCCCchHHHHHhhhcC
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSA-EKAIFIFVDN---V----LPPTGAIMSTIYDEKKD   83 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~-~~slfl~Vnn---~----lp~~~~~m~~lY~~~kd   83 (99)
                      .-|-|.+++|+++|...|-+.+++++ ...|+..+|.   +    ++.++.+|++.+..+.+
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~  119 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD  119 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence            35889999999999999999999986 4777888763   2    34556677777766544

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=85.84  E-value=3  Score=26.77  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=43.9

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      +..+-|+++.||+++...|..+-++++++- -|..+++....+.+|++ |.-.  +...|.|.|.
T Consensus        40 ~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~  100 (100)
T 1uh6_A           40 KVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ  100 (100)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence            334568999999999999999999987653 34455665677888887 3321  2347888884

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=85.18  E-value=2.3  Score=24.77  Aligned_cols=59  Identities=7%  Similarity=0.005  Sum_probs=41.8

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ..+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.-   -.++..|++..
T Consensus        17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~---i~~~~~l~l~~   75 (79)
T 3phx_B           17 STYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG---LKPLSTVFMNL   75 (79)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT---CCTTCEEEEEE
T ss_pred             EEEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC---CCCCCEEEEEE
Confidence            34569999999999999999999987753 4555776666677777631   12344677654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.60  E-value=1.2  Score=25.93  Aligned_cols=45  Identities=13%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      .+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++
T Consensus        21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~   65 (81)
T 2dzi_A           21 SLQVPEDELVSTLKQLVSEKLNVPVRQQ-RLLFKGKALADGKRLSD   65 (81)
T ss_dssp             EEEECSSCBHHHHHHHHHHHTCCCTTTC-EEEETTEECCTTSBGGG
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHH
Confidence            4568999999999999999999987643 34446665556677765

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=84.26  E-value=3.2  Score=25.60  Aligned_cols=61  Identities=10%  Similarity=0.077  Sum_probs=43.2

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      ...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++-  -+ ++..|++...
T Consensus        33 ~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I~l~~~   93 (97)
T 1wyw_B           33 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQE   93 (97)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEEEEEES
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEEEEEEe
Confidence            3446699999999999999999999987644444 665556777888752  11 2336776654

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=83.83  E-value=2.4  Score=25.53  Aligned_cols=60  Identities=8%  Similarity=-0.036  Sum_probs=42.2

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG   94 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~   94 (99)
                      .+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++.=  -+ ++..|++....
T Consensus        18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~   77 (88)
T 2hj8_A           18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL   77 (88)
T ss_dssp             EEEEESSSBHHHHHHHHHHHTCSCTTTEE-EESSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred             EEEECCCCcHHHHHHHHHHHhCCChhHEE-EEECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence            35589999999999999999999876543 444666556777887752  12 34478777653

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=83.81  E-value=2.6  Score=26.65  Aligned_cols=62  Identities=11%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEE-EEcC----ccCCCCchHH---HHHhhhcCCCCeEEE
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMS---TIYDEKKDEDGFLYV   90 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl-~Vnn----~lp~~~~~m~---~lY~~~kd~DGfLYl   90 (99)
                      -..+-||.+.++.++...||.+.++.+.+.+-+ |++.    ...+.+..|.   ++|+-.++..=.||+
T Consensus        17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv   86 (89)
T 1vd2_A           17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV   86 (89)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence            445779999999999999999999988887766 4543    1346666664   466666654433443

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=83.74  E-value=1.9  Score=25.34  Aligned_cols=48  Identities=10%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|.|.++.+++.++....++.++++++--|+|=+..+ .++.|.+++
T Consensus        13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l   60 (72)
T 1wm3_A           13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL   60 (72)
T ss_dssp             EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence            456889999999999999999999998776677644444 444555544

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=83.49  E-value=2.6  Score=24.18  Aligned_cols=58  Identities=12%  Similarity=0.044  Sum_probs=40.2

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY   92 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y   92 (99)
                      ..+-|+.+.||+++...|..+.+++++. .-|+.++.....+.++++.    .- ++..|++.-
T Consensus        16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~-qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~   74 (77)
T 2bwf_A           16 WEVNVAPESTVLQFKEAINKANGIPVAN-QRLIYSGKILKDDQTVESY----HIQDGHSVHLVK   74 (77)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence            3456899999999999999999998765 3444566655566677653    22 334666654

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=83.47  E-value=3.1  Score=25.11  Aligned_cols=58  Identities=10%  Similarity=-0.005  Sum_probs=40.2

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCcc-CCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~l-p~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ..-|+.+.||+++...|..+.++++++ .-|+.+++. ...+.+|++.=  - .++..|++..
T Consensus        24 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~lL~D~~tL~~y~--I-~~gs~i~lv~   82 (84)
T 2kk8_A           24 ELEVDYRDTLLVVKQKIERSQHIPVSK-QTLIVDGIVILREDLTVEQCQ--I-VPTSDIQLEV   82 (84)
T ss_dssp             EEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCCSSSBHHHHT--C-CTTSCEEEEE
T ss_pred             EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEEecCCcCCHHHcC--C-CCCCEEEEEE
Confidence            345899999999999999999998765 344456655 67777887641  1 1333566543

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=83.24  E-value=2.5  Score=25.53  Aligned_cols=59  Identities=10%  Similarity=0.085  Sum_probs=42.6

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      .+-|+.+.||+++...|.++.+++++. .-|+.++.....+.+|++.=  - .++..|++...
T Consensus        15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~~--i-~~~~~i~l~~r   73 (96)
T 3k9o_B           15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLR   73 (96)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGGT--C-CTTCEEEEEEC
T ss_pred             EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHcC--C-CCCCEEEEEEE
Confidence            456899999999999999999998765 45556776666777777641  1 23447777654

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=83.22  E-value=3.4  Score=25.24  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=41.6

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ...+-|+.+.||+++...|..+.++++++- -|+.+++....+.+|++.=  - .++..|++..
T Consensus        29 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y~--I-~~gstI~lv~   88 (93)
T 2l7r_A           29 LHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQCG--V-EALTTLEVAG   88 (93)
T ss_dssp             EEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHHT--C-CSSCEEEEEC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence            444668999999999999999999987653 3445666556777887651  1 1334666654

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=82.76  E-value=2.8  Score=26.17  Aligned_cols=60  Identities=10%  Similarity=0.124  Sum_probs=42.3

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG   94 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~   94 (99)
                      .+-|+.+.||+++...|.++.++++++ .-|+.+++....+.+|++.=  -+ ++..|++....
T Consensus        35 ~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~yg--I~-~gstI~l~~r~   94 (100)
T 1yqb_A           35 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQCG--VR-DGLTVHLVIKR   94 (100)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHHT--CC-TTCEEEEEECC
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHCC--CC-CCCEEEEEEcC
Confidence            455899999999999999999998764 44455676666777887651  11 23467776543

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=82.31  E-value=3  Score=26.03  Aligned_cols=58  Identities=10%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCC-CCeEEEEec
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYS   93 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~-DGfLYl~Ys   93 (99)
                      .+-|+.+.||+++...|..+.++++++ .-|+.+++....+.+|+++    .-. +..|+|...
T Consensus        30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~   88 (106)
T 1wx7_A           30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIK   88 (106)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEEC
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEc
Confidence            455899999999999999999998754 4455677666677788765    222 336777654

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=82.15  E-value=2.9  Score=24.97  Aligned_cols=58  Identities=12%  Similarity=0.169  Sum_probs=41.6

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEec
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYS   93 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys   93 (99)
                      .+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.-    -++..|+|...
T Consensus        19 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~d~~tL~~~~----i~g~~i~l~~~   76 (90)
T 4dwf_A           19 TFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQEYN----VGGKVIHLVER   76 (90)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT----CTTEEEEEEEC
T ss_pred             EEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCeECCCCCCHHHcC----CCCcEEEEEec
Confidence            4568999999999999999999987654 3444766666777887632    22446666654

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=81.92  E-value=2.9  Score=25.55  Aligned_cols=60  Identities=10%  Similarity=0.060  Sum_probs=41.5

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG   94 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~   94 (99)
                      .+-|+.+.||+++...|.++.+++++. .-|+.+++....+.++++.=  - .++..|++....
T Consensus        14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~~g--i-~~g~~i~l~~~~   73 (98)
T 1yx5_B           14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLRL   73 (98)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGGGT--C-CTTCEEEEEECC
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHHcC--C-CCCCEEEEEEeC
Confidence            456889999999999999999998765 34455666555666776531  1 134477776543

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=80.86  E-value=2.8  Score=24.72  Aligned_cols=59  Identities=3%  Similarity=-0.028  Sum_probs=41.4

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ..+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.  .-+ ++..|++..
T Consensus        25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~   83 (88)
T 3dbh_I           25 IEIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KIL-GGSVLHLVL   83 (88)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence            34569999999999999999999987643 344476666667788774  122 344666653

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=80.58  E-value=8.4  Score=24.46  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCC-eEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fLYl~Y   92 (99)
                      +..+-|.++.||++|...|..+.++++++-.-.| +++....+.+|+    .|.=.|| -|.|.|
T Consensus        33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----dY~I~dgstLhL~~   92 (93)
T 3plu_A           33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----DYEVHDQTNLELYY   92 (93)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----GGTCCTTCEEEEEE
T ss_pred             EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----HcCCCCCCEEEEEe
Confidence            5567799999999999999999999987644444 666667777775    3443333 566655

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=80.43  E-value=2.6  Score=26.27  Aligned_cols=48  Identities=13%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|.|.++.+++.++...+++.++++++--|+| ++....++.|.+++
T Consensus        17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl   64 (91)
T 2io0_B           17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL   64 (91)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4568899999999999999999999987655666 54434455566554

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=80.36  E-value=2.5  Score=24.46  Aligned_cols=57  Identities=7%  Similarity=-0.014  Sum_probs=39.1

Q ss_pred             eEE-ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290           31 RYL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY   92 (99)
Q Consensus        31 Kfl-vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y   92 (99)
                      .+- |+.+.||+++...|..+.++++++- -|+.++.....+.++++.    .- ++..|++..
T Consensus        17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~   75 (78)
T 2faz_A           17 TVDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQMEDGHTLFDY----EVRLNDTIQLLV   75 (78)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred             EEeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence            344 8999999999999999999987653 344466655566676553    22 334666654

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=80.32  E-value=4.4  Score=26.23  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|-|.++.+++.++....++.++++.+--|+| ++.....+.|.+++
T Consensus        38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl   85 (110)
T 2k8h_A           38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL   85 (110)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4468899999999999999999999988655666 55545567888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1eo6a_	116	d.15.1.3 (A:) Golgi-associated ATPase enhancer of	3e-36
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	9e-35
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	9e-30

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (293), Expect = 3e-36
 Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I        I   +   +YLVP+D+TV QF+++IRKRI+L +EKAIF+FVD  +P +   
Sbjct: 32  IVEKVSGSQIVD-IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLT 90

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           M  +Y+++KDEDGFLYV YSGENTFG
Sbjct: 91  MGQLYEKEKDEDGFLYVAYSGENTFG 116

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 9e-35
 Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 14  ICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 73
           I   + K  I   L   +YLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+PPT A 
Sbjct: 34  IVEKAPKARIGD-LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSAT 92

Query: 74  MSTIYDEKKDEDGFLYVTYSGENTFG 99
           M  +Y E  +ED FLY+ YS E+ +G
Sbjct: 93  MGQLYQEHHEEDFFLYIAYSDESVYG 118

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 9e-30
 Identities = 26/74 (35%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 27  LQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDED 85
           L   ++LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDED
Sbjct: 46  LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDED 105

Query: 86  GFLYVTYSGENTFG 99
           GFLY+ Y+ + TFG
Sbjct: 106 GFLYMVYASQETFG 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	100.0
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	100.0
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	99.85
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	92.58
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	92.22
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	90.11
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	88.87
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	88.76
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	87.85
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	87.0
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	86.85
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	86.69
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	86.03
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	85.74
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	85.31
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	84.58
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	84.58
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	84.41
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	83.18
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	82.89
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	82.47
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	82.13
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	81.22

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-45  Score=248.44  Aligned_cols=97  Identities=47%  Similarity=0.755  Sum_probs=94.7

Q ss_pred             cccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhh
Q 034290            2 ETATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDE   80 (99)
Q Consensus         2 ~~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~   80 (99)
                      +.++.|||+ ||||||+++++++|.|| ++|||||.++||+||+.+||+||+|++++||||||||++|+++++||+||++
T Consensus        21 ~~i~~KyPdriPVIve~~~~s~lp~ld-k~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn~~~~~~~~ti~~lY~~   99 (118)
T d3d32a1          21 EKIRKKYPDRVPVIVEKAPKARIGDLD-KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQE   99 (118)
T ss_dssp             HHHHHHCTTEEEEEEEECTTCCSCCCS-CSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTCBHHHHHHH
T ss_pred             HHHHHHCCCCceEEEEEcCCCCCcccc-cceEEecCCccHHHHHHHHHHHhCCCccceEEEEECCcccCccccHHHHHHH
Confidence            357899999 99999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCeEEEEecCcccCC
Q 034290           81 KKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        81 ~kd~DGfLYl~Ys~~~~fG   99 (99)
                      |||+||||||+||+|+|||
T Consensus       100 ~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1         100 HHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             HCCTTSCEEEEEESCTTCC
T ss_pred             hCCCCcEEEEEEecccccC
Confidence            9999999999999999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-45  Score=246.85  Aligned_cols=96  Identities=48%  Similarity=0.787  Sum_probs=94.3

Q ss_pred             ccccCCCc-eEEEEEecCCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhh
Q 034290            3 TATMGIPF-FLFICMNSHKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEK   81 (99)
Q Consensus         3 ~~~~~~p~-ipVIvE~~~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~   81 (99)
                      .+++|||+ ||||||+++++++|.|| +.|||||.|+|++||+.+||+||+|++++||||||||++|+++++||+||++|
T Consensus        20 ~i~~KyP~rIPVIve~~~~~~l~~ld-k~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~~~l~~~s~~i~~lY~~~   98 (116)
T d1eo6a_          20 KIRAKYPDRVPVIVEKVSGSQIVDID-KRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE   98 (116)
T ss_dssp             HHHHHCTTEEEEEEEECTTCSSCCCS-CCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             HHHHHCCCCceEEEEECCcCcCCccc-CcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEECCcccchhhhHHHHHHHc
Confidence            57889999 99999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEecCcccCC
Q 034290           82 KDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        82 kd~DGfLYl~Ys~~~~fG   99 (99)
                      ||+||||||+||+|+|||
T Consensus        99 KdeDGfLYi~Ys~entFG  116 (116)
T d1eo6a_          99 KDEDGFLYVAYSGENTFG  116 (116)
T ss_dssp             CCTTSCEEEEEECCCCCC
T ss_pred             CCCCcEEEEEEeccccCC
Confidence            999999999999999999

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-43  Score=238.42  Aligned_cols=96  Identities=29%  Similarity=0.584  Sum_probs=92.1

Q ss_pred             ccccCCCc-eEEEEEecCC-CCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcC-ccCCCCchHHHHHh
Q 034290            3 TATMGIPF-FLFICMNSHK-FYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYD   79 (99)
Q Consensus         3 ~~~~~~p~-ipVIvE~~~~-~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn-~lp~~~~~m~~lY~   79 (99)
                      .++.|||+ ||||||++++ +++|+|| +.|||||.++||+||+.+||+||+|++++|||||||+ .+|+++++||+||+
T Consensus        21 ~i~~KyP~riPVIve~~~~~~~lp~Ld-k~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfvn~~~~p~~~~~i~~lY~   99 (119)
T d2zjda1          21 LIREQHPTKIPVIIERYKGEKQLPVLD-KTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYE   99 (119)
T ss_dssp             HHHHHCTTEEEEEEEECTTCCSSCCCS-CCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHH
T ss_pred             HHHHHCCCcceEEEEECCCCCcCcccc-ceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEEcCCccCCchhHHHHHHH
Confidence            47899999 9999999986 5799999 9999999999999999999999999999999999996 68999999999999


Q ss_pred             hhcCCCCeEEEEecCcccCC
Q 034290           80 EKKDEDGFLYVTYSGENTFG   99 (99)
Q Consensus        80 ~~kd~DGfLYl~Ys~~~~fG   99 (99)
                      +|||+||||||+||+|+|||
T Consensus       100 ~~kdeDGfLYi~Ys~entFG  119 (119)
T d2zjda1         100 SEKDEDGFLYMVYASQETFG  119 (119)
T ss_dssp             HHCCTTSCEEEEEEEHHHHH
T ss_pred             HcCCCCCeEEEEEeccccCC
Confidence            99999999999999999998

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=1.6e-21  Score=124.62  Aligned_cols=75  Identities=16%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             CCCCCCcccceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCc-cCCCCchHHHHHhhhcCCCCeEEEEecCccc
Q 034290           19 HKFYIPTCLQCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSTIYDEKKDEDGFLYVTYSGENT   97 (99)
Q Consensus        19 ~~~~lp~l~~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~-lp~~~~~m~~lY~~~kd~DGfLYl~Ys~~~~   97 (99)
                      +-+++|.|+ ++||.|.++.+++.++.+|||+|+   .+++|+||||+ +|++|+++|+||+||+ .||.|.++||.++|
T Consensus         9 ~iG~aPilk-~~~~kv~~~~~f~~vi~FLrk~Lk---~dsvf~Yin~sFaPspDe~vg~Ly~~f~-~~gkLvv~Y~~t~A   83 (84)
T d1wz3a1           9 ATGGAPILK-QSKFKVSGSDKFANVIDFLRRQLH---SDSLFVYVNSAFSPNPDESVIDLYNNFG-FDGKLVVNYACSMA   83 (84)
T ss_dssp             ECTTCCCCS-CCEEEEETTSBTHHHHHHHHHHHT---CSSCEEEEEEEECCCTTSBHHHHHHHHC-BTTBEEEEEESCSC
T ss_pred             ecCCCcccc-cceEEECCCCchHHHHHHHHHHhc---CCeEEEEEccccCCChhhHHHHHHHhcC-CCCEEEEEEecccc
Confidence            456799999 999999999999999999999997   67999999985 8999999999999997 78999999999999


Q ss_pred             C
Q 034290           98 F   98 (99)
Q Consensus        98 f   98 (99)
                      |
T Consensus        84 w   84 (84)
T d1wz3a1          84 W   84 (84)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.4  Score=27.14  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y   92 (99)
                      +-..-|.++.||+++...|..+.++++++ .-|+.+++....+.+|++    |.= ++-.|.|.|
T Consensus        13 ~~~v~V~~~~tV~~lK~~I~~~~~i~~~~-q~Li~~Gk~L~d~~tL~~----y~I~~gstl~L~~   72 (73)
T d1m94a_          13 KVRVKCLAEDSVGDFKKVLSLQIGTQPNK-IVLQKGGSVLKDHISLED----YEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHHCCTTTS-EEEESSSCEECTTSBHHH----HTCCTTEEEEEEE
T ss_pred             EEEEEECCcCcHHHHHHHHHHhhcccccE-EEEEEEeEEecccCcHHH----cCCCCCCEEEEEE
Confidence            44466999999999999999999999875 566667766677888887    223 233777776

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=92.22  E-value=0.091  Score=30.46  Aligned_cols=48  Identities=8%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      ...|.|.++.+++.++..+.++.++++++--|+| |+.....+.|++++
T Consensus        15 ~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f-~G~~l~~~~T~~~~   62 (79)
T d1euvb_          15 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL   62 (79)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred             EEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEE-CCEEeCCCCCHHHC
Confidence            5568899999999999999999999988755555 66655555666554

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.11  E-value=0.25  Score=29.25  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccC
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLS   54 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~   54 (99)
                      ...|.||.+.++.++...|++|+++.
T Consensus        23 ~~~~~l~~~it~~dL~~kI~~rf~~~   48 (85)
T d1ip9a_          23 IFALMLKGDTTYKELRSKIAPRIDTD   48 (85)
T ss_dssp             CEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence            56788999999999999999999764

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.65  Score=26.43  Aligned_cols=48  Identities=8%  Similarity=0.081  Sum_probs=38.2

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTI   77 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~l   77 (99)
                      .-.|.|.++.+++.++....++.++++++.-|+| |+.....+.|+.++
T Consensus        14 ~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~f-dG~~l~~~~T~~~l   61 (77)
T d2uyzb1          14 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKEL   61 (77)
T ss_dssp             EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCCHHHc
Confidence            4569999999999999999999999988766664 55444445777776

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.58  Score=26.39  Aligned_cols=47  Identities=9%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      ...+-|+++.||+++...|..+.++++++ .-|+.++.....+.+|++
T Consensus        15 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-qrL~~~gk~L~d~~tL~~   61 (76)
T d1z2ma2          15 SSTYEVRLTQTVAHLKQQVSGLEGVQDDL-FWLTFEGKPLEDQLPLGE   61 (76)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBGGG
T ss_pred             EEEEEECCCCcHHHHHHHHHHHhcCChhH-eEEEECCeECCCCCcHHH
Confidence            34567999999999999999999999865 456667765567777776

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=0.65  Score=26.57  Aligned_cols=60  Identities=13%  Similarity=-0.025  Sum_probs=44.3

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEec
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTYS   93 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Ys   93 (99)
                      ...+-|.++.||+++...|..+.++++++- -|+.++.....+.+|++    |.= +|..|+|.-+
T Consensus        15 ~~~l~V~~~~tV~~lK~~I~~~~~ip~~~q-rLi~~Gk~L~d~~tL~~----y~I~~~sti~lvi~   75 (80)
T d1ttna1          15 DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ-RWFFSGRPLTDKMKFEE----LKIPKDYVVQVIVS   75 (80)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHTTCCCSTTC-EEEETTEECCTTSHHHH----CCCSSSCEEEEECC
T ss_pred             EEEEEECCcCcHHHHHHHHHHHhCCCcccE-EEEECceEcCCCCcHHH----cCCCCCCEEEEEec
Confidence            446779999999999999999999988764 45556665567888887    322 4557776543

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.00  E-value=0.69  Score=28.09  Aligned_cols=59  Identities=17%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCC-eEEEEe
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDG-FLYVTY   92 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DG-fLYl~Y   92 (99)
                      +..+-|.++.||+++...|..+.++++++- -|+.++.....+.+|++    |.=.|| .|.|.|
T Consensus        40 ~~~v~V~p~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~d----ygI~~GstI~L~~   99 (100)
T d1uh6a_          40 KVRVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD----YEIHDGMNLELYY   99 (100)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH----HTCCTTEEEEEEC
T ss_pred             EEEEEECCcChHHHHHHHHHHHHCCCcceE-EEEEEeecccCcCCHHH----cCCCCCCEEEEEE
Confidence            455679999999999999999999998764 45557777777878765    344455 444433

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=1.1  Score=25.89  Aligned_cols=59  Identities=10%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      ...-|..+.||.++...|..+.++++++--.+| +++....+.+|++ |.=  .++-.|+|.-
T Consensus        20 ~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~d~~tL~~-y~I--~~~stl~l~~   78 (87)
T d1wh3a_          20 YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQVLQDWLGLGI-YGI--QDSDTLILSK   78 (87)
T ss_dssp             EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTEECCSSSBHHH-HTC--CTTEEEEEEE
T ss_pred             EEEEECCcCcHHHHHHHHHHHHCcChHHeEEEe-eceEcCCCCcHHH-cCC--CCCCEEEEEe
Confidence            345589999999999999999999987754444 6666677889987 322  1233666654

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.53  Score=26.61  Aligned_cols=57  Identities=11%  Similarity=0.097  Sum_probs=41.1

Q ss_pred             eEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290           31 RYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY   92 (99)
Q Consensus        31 Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y   92 (99)
                      .+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.    .= ++-.++|..
T Consensus        14 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~y----~i~~~s~I~L~~   71 (76)
T d1ogwa_          14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVL   71 (76)
T ss_dssp             EEECCTTSBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEE
T ss_pred             EEEECCCCcHHHHHHhhhhhcCCChHHE-EeEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence            4568999999999999999999998775 444566666677777654    22 333666543

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.03  E-value=2  Score=24.91  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=38.7

Q ss_pred             ccc-ceeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           25 TCL-QCCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        25 ~l~-~k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      .|+ +.-.+-|+.+.||+++...|..+.++++++- -|..++.....+.+|++
T Consensus        18 ~L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q-~Li~~Gk~L~D~~tL~d   69 (86)
T d1zkha1          18 KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQ-KLQYEGIFIKDSNSLAY   69 (86)
T ss_dssp             SCSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTE-EEEETTEEECTTSBHHH
T ss_pred             ccCCeEEEEEECCCChHHHHHHHHHhhhcCChHHE-EEEeCCcCcCCCCCHHH
Confidence            355 2345679999999999999999999987764 44456665567888887

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.74  E-value=0.82  Score=26.11  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      ...-|+++.||+++...|..+.++++++- -|+.++.....+.+|++
T Consensus        15 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~d~~tL~~   60 (78)
T d2zeqa1          15 FPVEVDSDTSILQLKEVVAKRQGVPADQL-RVIFAGKELPNHLTVQN   60 (78)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHTCCGGGE-EEEETTEEECTTCBGGG
T ss_pred             EEEEEcccccHHHHHHHHHHHHCcChhHe-EEEEeeeEcCCCCCHHH
Confidence            34569999999999999999999998764 45556654466777765

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=1  Score=25.67  Aligned_cols=55  Identities=7%  Similarity=0.028  Sum_probs=40.0

Q ss_pred             ecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEe
Q 034290           34 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTY   92 (99)
Q Consensus        34 vp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Y   92 (99)
                      |.++.||+++...|..+.++++++--.+ .++.....+.+|++.   --.++..|+|..
T Consensus        19 v~~~~TV~~lK~~I~~~~gip~~~qrLi-~~Gk~L~d~~tL~~y---~I~~~s~i~lv~   73 (76)
T d1wy8a1          19 VSRKATIEELRERVWALFDVRPECQRLF-YRGKQLENGYTLFDY---DVGLNDIIQLLV   73 (76)
T ss_dssp             ECTTCBHHHHHHHHHHHSCCCTTTEEEE-ETTEECCSSSBHHHH---TCCTTCEEEEEE
T ss_pred             cCCCChHHHHHHHHHHHHCCCchhcEEE-EEeeEecCCCCHHHc---CCCCCCEEEEEE
Confidence            8999999999999999999987664444 466655677788653   222455777654

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.58  E-value=1.9  Score=25.53  Aligned_cols=34  Identities=12%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             EEecCCCchHHHHHHHHHhhccCcc-ceEEEEEcCc
Q 034290           32 YLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNV   66 (99)
Q Consensus        32 flvp~~~tv~~f~~~irk~l~l~~~-~slfl~Vnn~   66 (99)
                      --||.++||+++...|.+..+++++ +.| +|.+..
T Consensus        27 ~kv~~~~TV~~LK~~i~~~~gip~~~qrL-~y~~~~   61 (97)
T d1wjna_          27 KQLPDSMTVQKVKGLLSRLLKVPVSELLL-SYESSK   61 (97)
T ss_dssp             EEEETTSBHHHHHHHHHTTTTCCTTTCEE-EEECTT
T ss_pred             EEcCCCCCHHHHHHHHHHHHCcChHHeEE-EecCCC
Confidence            3599999999999999999999975 555 455543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=1.2  Score=26.82  Aligned_cols=61  Identities=11%  Similarity=-0.018  Sum_probs=44.2

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcCCCCeEEEEecC
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSG   94 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd~DGfLYl~Ys~   94 (99)
                      -..-|+.+.||.++...|..++++++++ +=|+.++.....+.+|++.  .-+ ++..+++-...
T Consensus        32 ~~lev~~~~TV~~LK~~I~~~~gi~~~~-qkLi~~Gk~L~d~~tL~~~--gI~-~~s~i~vi~~~   92 (100)
T d1wjua_          32 NLLETRLHITGRELRSKIAETFGLQENY-IKIVINKKQLQLGKTLEEQ--GVA-HNVKAMVLELK   92 (100)
T ss_dssp             EEEEEESSSBHHHHHHHHHHHTTCCSTT-CEEEETTEECCTTSBHHHH--TCC-SSEEEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHHCCCCee-EEEEEcccCcCCCcCHHHc--CCC-CCCEEEEEEcC
Confidence            3445899999999999999999998764 5677787777778888875  121 34466555433

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.41  E-value=0.53  Score=28.57  Aligned_cols=45  Identities=18%  Similarity=0.165  Sum_probs=34.6

Q ss_pred             EEecCCCchHHHHHHHHHhhccCccceEEEEEcCccC-CCCchHHHH
Q 034290           32 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLP-PTGAIMSTI   77 (99)
Q Consensus        32 flvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp-~~~~~m~~l   77 (99)
                      .-|+++.||+++...|..+.++++++- -|+.|++.. ..+.+|+++
T Consensus        26 l~V~~~~tV~~LK~~Ie~~~gip~~~Q-~Li~~Gk~L~dd~~tL~~~   71 (102)
T d1v5oa_          26 LQVNPDFELSNFRVLCELESGVPAEEA-QIVYMEQLLTDDHCSLGSY   71 (102)
T ss_dssp             EEECTTCBHHHHHHHHHHHTCCCGGGB-CEEETTEEECCSSSBHHHH
T ss_pred             EEECCcccHHHHHHHHHHHhCCCcceE-EEEeCCeEeecccCCHHHc
Confidence            449999999999999999999987643 455576644 456788873

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.18  E-value=1.5  Score=24.41  Aligned_cols=57  Identities=4%  Similarity=-0.034  Sum_probs=40.4

Q ss_pred             eeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEE
Q 034290           30 CRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVT   91 (99)
Q Consensus        30 ~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~   91 (99)
                      ..+-|+++.||+++...|..+.++++++-- |+.++.....+.+|++    |.- ++-.+++.
T Consensus        13 ~~l~V~~~~tV~~lK~~i~~~~gi~~~~qr-Li~~Gk~L~d~~tL~~----y~I~~~sti~lv   70 (73)
T d1bt0a_          13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQR-LIYAGKQLADDKTAKD----YNIEGGSVLHLV   70 (73)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGG----GTCCTTCEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCCChHHEE-EEECCeEcCCCCcHHH----cCCCCCCEEEEE
Confidence            345689999999999999999999887654 4446655566778876    333 34455554

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.89  E-value=1  Score=25.90  Aligned_cols=47  Identities=17%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      +..+-|+++.||+++...|..+.++++++- -|+.++.....+.+|++
T Consensus        21 ~~~i~v~~~~tV~~lK~~I~~~~~v~~~~q-rL~f~Gk~L~d~~tL~~   67 (83)
T d1wx8a1          21 CHEFFLAENSNVRRFKKQISKYLHCNADRL-VLIFTGKILRDQDILSQ   67 (83)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHHTCSCTTTB-CCEETTEECCTTSCHHH
T ss_pred             cEEEEECCCChHHHHHHHHHHHhCCChhHE-EEEEEhhccccCCcHHH
Confidence            445679999999999999999999988653 44457765566778877

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.47  E-value=1.5  Score=24.51  Aligned_cols=47  Identities=15%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      ...+-|+++.||+++...|..+.++++++-- |..++.....+.+|++
T Consensus        12 ~~~l~V~~~~tV~~lK~~I~~~~gip~~~qr-Li~~Gk~L~d~~tL~d   58 (73)
T d1wx9a1          12 TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE   58 (73)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHHCCCTTTCC-CEETTEECCSSSBHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHhCCChHHEE-EEECCeEccCCCCHHH
Confidence            3456699999999999999999999876543 4447766677889988

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.13  E-value=1.4  Score=26.22  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             eeeEEecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHH
Q 034290           29 CCRYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMST   76 (99)
Q Consensus        29 k~Kflvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~   76 (99)
                      +..+-|+.+.||+++...|..+.++++++ .-|+.++.....+.+|++
T Consensus        43 ~~~i~V~~~~tV~~LK~~I~~~~gi~~~~-qrLi~~Gk~L~D~~tL~~   89 (103)
T d1j8ca_          43 KEEFAVPENSSVQQFKEAISKRFKSQTDQ-LVLIFAGKILKDQDTLIQ   89 (103)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHCSCSSS-EEEEETTEEESTTSCGGG
T ss_pred             cEEEEECCCChHHHHHHHHHHHHCcCHHH-eeeeeeeecccCCCcHHH
Confidence            44567999999999999999999998865 566678776667777766

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.99  Score=25.70  Aligned_cols=55  Identities=5%  Similarity=-0.002  Sum_probs=38.4

Q ss_pred             EecCCCchHHHHHHHHHhhccCccceEEEEEcCccCCCCchHHHHHhhhcC-CCCeEEEEe
Q 034290           33 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKD-EDGFLYVTY   92 (99)
Q Consensus        33 lvp~~~tv~~f~~~irk~l~l~~~~slfl~Vnn~lp~~~~~m~~lY~~~kd-~DGfLYl~Y   92 (99)
                      .++.+.||+++...|..+.++++++--.+| +++....+.+|++    |.- ++..++|..
T Consensus        18 ~v~~~~tV~~lK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~----y~I~~~sti~lv~   73 (76)
T d2faza1          18 SLSRLTKVEELRRKIQELFHVEPGLQRLFY-RGKQMEDGHTLFD----YEVRLNDTIQLLV   73 (76)
T ss_dssp             EECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTCBTTT----TTCCTTCEEEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHCcChHHeEEEE-eeEeccCCCcHHH----cCCCCCCEEEEEE
Confidence            389999999999999999999887754444 6654455666553    222 444666654