Citrus Sinensis ID: 034304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MAAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFPMILLQLRIWESDASSGRRLMTLRLSSPRL
Secondary Structure (PSIPRED)
ccccccEEEEEcEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccEEEEccHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHcccccccEEEEEEcccccc
Coil and Loop (DISEMBL)
maapatsanFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNsrlsaphflsltFPMILLQLRIWESDASSGRRLMTLRLSSPRL
Flexible Loop (DISEMBL)
maapatsanfmGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNsrlsaphflSLTFPMILLQLRIWEsdassgrrlmtlrlssprl
Low Complexity Region (SEG)
MAAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFPMILLQLRIWESDASSGRRLMTLRLSSPRL
Disordered region (IsUnstruct)
*********FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIME************LSAPHFLSLTFPMILLQLRIWE*******************
Disordered Region (DISOPRED)
******S*NFMGMKLQLLVEASKAIDAIQFYKTAFGAVE****************SRLSAPHFLSLTFPMILLQLRIWESDASSGRRLMTLRLSSP**
Disordered Region (DISEMBL)
********NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFPMILLQLRIWESDASSGRRLMTLRLSSPRL
Disordered Region (DISPRO)
*****TSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFPMILLQLRIWESDASSGRRLM**RL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFPMILLQLRIWESDASSGRRLMTLRLSSPRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9LV66	166	Uncharacterized protein A	yes	no	0.510	0.301	0.482	1e-05

>sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLS 65
          F   K  LLVEA K  DA+ FYK+AFGA+E    +  KRK ++EL      PH LS
Sbjct: 23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQEL------PHVLS 72

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
224069912	164	predicted protein [Populus trichocarpa]	0.561	0.335	0.540	7e-09
351723033	165	uncharacterized protein LOC100306467 [Gl	0.602	0.357	0.576	1e-07
225470242	161	PREDICTED: uncharacterized protein At5g4	0.479	0.291	0.638	2e-07
255572644	165	conserved hypothetical protein [Ricinus	0.448	0.266	0.58	5e-07
356567730	163	PREDICTED: uncharacterized protein At5g4	0.571	0.343	0.535	2e-06
388490626	165	unknown [Medicago truncatula]	0.581	0.345	0.542	4e-06
357505041	165	Early tobacco anther [Medicago truncatul	0.581	0.345	0.542	4e-06
388492568	167	unknown [Lotus japonicus]	0.479	0.281	0.638	5e-06
449511236	159	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.520	0.320	0.509	2e-05
449437180	159	PREDICTED: uncharacterized protein At5g4	0.520	0.320	0.509	2e-05

>gi|224069912|ref|XP_002303084.1| predicted protein [Populus trichocarpa] gi|118487570|gb|ABK95611.1| unknown [Populus trichocarpa] gi|222844810|gb|EEE82357.1| predicted protein [Populus trichocarpa]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 6/61 (9%)

Query: 5  ATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFL 64
          A   +F   K QL VEA KA DA+QFYKTAFGAVE  R  + KRKA++EL      PH +
Sbjct: 15 AVEVSFKSFKPQLFVEAPKANDAVQFYKTAFGAVETCRTTQPKRKADQEL------PHIV 68

Query: 65 S 65
          S
Sbjct: 69 S 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723033|ref|NP_001235473.1| uncharacterized protein LOC100306467 [Glycine max] gi|255628635|gb|ACU14662.1| unknown [Glycine max]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 2  AAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          AA A + +F+ +K QLLVEA KA DAI F+K AFGA E+ R +  KRKAE EL   LSA
Sbjct: 14 AAAAATVSFVAVKPQLLVEAPKANDAILFFKAAFGAEEVGRTLNPKRKAEHELPLILSA 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470242|ref|XP_002263284.1| PREDICTED: uncharacterized protein At5g48480 [Vitis vinifera]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query: 14 KLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          K QL VEA KA DA+QFYK AFGA E++R M  KRKA++EL   LSA
Sbjct: 22 KPQLFVEAPKATDAVQFYKAAFGAEEVNRTMHPKRKADQELPLILSA 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572644|ref|XP_002527255.1| conserved hypothetical protein [Ricinus communis] gi|223533348|gb|EEF35099.1| conserved hypothetical protein [Ricinus communis]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 6/50 (12%)

Query: 16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLS 65
          QLLVEA +A +A+QFYK AFGAVE  R  + KRKAE+EL      PH +S
Sbjct: 26 QLLVEAPRANEAVQFYKVAFGAVETGRTTQPKRKAEQEL------PHIIS 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567730|ref|XP_003552070.1| PREDICTED: uncharacterized protein At5g48480-like [Glycine max]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%)

Query: 5  ATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          A + +F+ +K QLL+EA KA DA+ FYK AF A E+ R +  KRKAE EL   LSA
Sbjct: 15 AAAVSFVALKPQLLIEAPKANDAVLFYKAAFAAEEVGRTLNPKRKAEHELPLILSA 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490626|gb|AFK33379.1| unknown [Medicago truncatula]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 2  AAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          A+P  S  F+  K QL VEA KA DA+ FYK AF A E+SR +  KRKA++EL   LSA
Sbjct: 15 ASPVVS--FVAFKPQLFVEAPKANDAVVFYKNAFAAEEVSRSLNAKRKADQELPLVLSA 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505041|ref|XP_003622809.1| Early tobacco anther [Medicago truncatula] gi|355497824|gb|AES79027.1| Early tobacco anther [Medicago truncatula] gi|388501826|gb|AFK38979.1| unknown [Medicago truncatula]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 2  AAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          A+P  S  F+  K QL VEA KA DA+ FYK AF A E+SR +  KRKA++EL   LSA
Sbjct: 15 ASPVVS--FVAFKPQLFVEAPKANDAVVFYKNAFAAEEVSRSLNAKRKADQELPLVLSA 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492568|gb|AFK34350.1| unknown [Lotus japonicus]

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 34/47 (72%)

Query: 14 KLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
          K QLLVEA KA DA+ FYK AFGA E+SR +  KRKA+ EL   LSA
Sbjct: 27 KPQLLVEAPKANDAVLFYKAAFGAEEVSRALNPKRKADHELPLILSA 73

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511236|ref|XP_004163901.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g48480-like [Cucumis sativus]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 9  NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLS 59
          +F   K QLL++A KA DA+ FYK AF A E++R + +KRKAE+E  + LS
Sbjct: 15 SFKAFKPQLLLQAPKATDAVDFYKAAFAAEELNRTLHSKRKAEQETPAILS 65

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437180|ref|XP_004136370.1| PREDICTED: uncharacterized protein At5g48480-like [Cucumis sativus]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)

Query: 9  NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLS 59
          +F   K QLL++A KA DA+ FYK AF A E++R + +KRKAE+E  + LS
Sbjct: 15 SFKAFKPQLLLQAPKATDAVDFYKAAFAAEELNRTLHSKRKAEQETPAILS 65

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2165996	166	AT5G48480 "AT5G48480" [Arabido	0.602	0.355	0.466	7.8e-07

TAIR|locus:2165996 AT5G48480 "AT5G48480" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query:     2 AAPA-TSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
             A P  T   F   K  LLVEA K  DA+ FYK+AFGA+E    +  KRK ++EL   LS+
Sbjct:    14 AGPVETHLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSS 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.130   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  10 22  0.45    29
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.33u 0.19s 14.52t   Elapsed:  00:00:01
  Total cpu time:  14.33u 0.19s 14.52t   Elapsed:  00:00:01
  Start:  Fri May 10 20:34:17 2013   End:  Fri May 10 20:34:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
cd07246	123	cd07246, Glo_EDI_BRP_like_8, This conserved domain	3e-04

>gnl|CDD|211349 cd07246, Glo_EDI_BRP_like_8, This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 26 DAIQFYKTAFGAVEISRIM 44
           AI FYK AFGA E++R+ 
Sbjct: 14 AAIDFYKKAFGAEELARMP 32

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
COG2764	136	PhnB Uncharacterized protein conserved in bacteria	99.64
PRK10148	147	hypothetical protein; Provisional	99.55
PF06983	116	3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltrans	99.39
cd06588	128	PhnB_like Escherichia coli PhnB and similar protei	99.34
cd08355	122	Glo_EDI_BRP_like_14 This conserved domain belongs	98.55
cd07246	122	Glo_EDI_BRP_like_8 This conserved domain belongs t	98.53
COG3865	151	Uncharacterized protein conserved in bacteria [Fun	98.06
cd08359	119	Glo_EDI_BRP_like_22 This conserved domain belongs	97.28
cd08349	112	BLMA_like Bleomycin binding protein (BLMA) and sim	96.74
PRK10291	129	glyoxalase I; Provisional	96.51
PF00903	128	Glyoxalase: Glyoxalase/Bleomycin resistance protei	96.47
cd08350	120	BLMT_like BLMT, a bleomycin resistance protein enc	96.39
TIGR00068	150	glyox_I lactoylglutathione lyase. Glyoxylase I is	96.34
cd07238	112	Glo_EDI_BRP_like_5 This conserved domain belongs t	96.33
cd09011	120	Glo_EDI_BRP_like_23 This conserved domain belongs	96.07
PF12681	108	Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B	95.93
cd08358	127	Glo_EDI_BRP_like_21 This conserved domain belongs	95.91
PLN03042	185	Lactoylglutathione lyase; Provisional	95.88
cd08346	126	PcpA_N_like N-terminal domain of Sphingobium chlor	95.86
cd08354	122	Glo_EDI_BRP_like_13 This conserved domain belongs	95.83
cd08342	136	HPPD_N_like N-terminal domain of 4-hydroxyphenylpy	95.69
cd07233	121	Glyoxalase_I Glyoxalase I catalyzes the isomerizat	95.65
cd08343	131	ED_TypeI_classII_C C-terminal domain of type I, cl	95.58
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	95.53
cd07264	125	Glo_EDI_BRP_like_15 This conserved domain belongs	95.49
PLN02367	233	lactoylglutathione lyase	95.46
cd07241	125	Glo_EDI_BRP_like_3 This conserved domain belongs t	95.36
cd08356	113	Glo_EDI_BRP_like_17 This conserved domain belongs	95.34
PF13669	109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	95.25
cd07263	119	Glo_EDI_BRP_like_16 This conserved domain belongs	95.15
TIGR03081	128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	95.03
cd08345	113	Fosfomycin_RP Fosfomycin resistant protein; inhibi	94.79
TIGR03645	162	glyox_marine lactoylglutathione lyase family prote	94.62
cd07253	125	Glo_EDI_BRP_like_2 This conserved domain belongs t	94.61
cd07254	120	Glo_EDI_BRP_like_20 This conserved domain belongs	94.54
cd07243	143	2_3_CTD_C C-terminal domain of catechol 2,3-dioxyg	94.53
PRK11478	129	putative lyase; Provisional	94.19
cd09013	121	BphC-JF8_N_like N-terminal, non-catalytic, domain	94.17
cd08362	120	BphC5-RrK37_N_like N-terminal, non-catalytic, doma	94.06
cd07257	153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	94.04
cd08351	123	ChaP_like ChaP, an enzyme involved in the biosynth	93.94
COG0346	138	GloA Lactoylglutathione lyase and related lyases [	93.93
cd07256	161	HPCD_C_class_II C-terminal domain of 3,4-dihydroxy	93.87
cd07261	114	Glo_EDI_BRP_like_11 This conserved domain belongs	93.8
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	93.76
cd08360	134	MhqB_like_C C-terminal domain of Burkholderia sp.	93.74
cd07240	117	ED_TypeI_classII_N N-terminal domain of type I, cl	93.67
cd07251	121	Glo_EDI_BRP_like_10 This conserved domain belongs	93.63
cd07262	123	Glo_EDI_BRP_like_19 This conserved domain belongs	93.42
cd07252	120	BphC1-RGP6_N_like N-terminal domain of 2,3-dihydro	93.41
cd08357	125	Glo_EDI_BRP_like_18 This conserved domain belongs	93.39
cd09014	166	BphC-JF8_C_like C-terminal, catalytic, domain of B	93.28
cd07244	121	FosA FosA, a Fosfomycin resistance protein, cataly	93.27
cd07247	114	SgaA_N_like N-terminal domain of Streptomyces gris	93.13
cd07249	128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	93.1
cd08348	134	BphC2-C3-RGP6_C_like The single-domain 2,3-dihydro	93.0
cd06587	112	Glo_EDI_BRP_like This domain superfamily is found	92.97
cd07245	114	Glo_EDI_BRP_like_9 This conserved domain belongs t	92.97
cd07255	125	Glo_EDI_BRP_like_12 This conserved domain belongs	92.73
cd09012	124	Glo_EDI_BRP_like_24 This conserved domain belongs	92.68
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	92.64
cd07266	121	HPCD_N_class_II N-terminal domain of 3,4-dihydroxy	92.5
PRK04101	139	fosfomycin resistance protein FosB; Provisional	92.44
PLN02300	286	lactoylglutathione lyase	92.31
COG3324	127	Predicted enzyme related to lactoylglutathione lya	92.27
cd07239	144	BphC5-RK37_C_like C-terminal, catalytic, domain of	92.25
cd07242	128	Glo_EDI_BRP_like_6 This conserved domain belongs t	92.1
cd08364	131	FosX FosX, a fosfomycin resistance protein, cataly	91.94
cd07235	122	MRD Mitomycin C resistance protein (MRD). Mitomyci	91.89
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	91.57
cd08361	124	PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cuma	91.32
cd08363	131	FosB FosB, a fosfomycin resistance protein, cataly	91.13
cd08353	142	Glo_EDI_BRP_like_7 This conserved domain belongs t	91.11
cd08347	157	PcpA_C_like C-terminal domain of Sphingobium chlor	90.72
cd07237	154	BphC1-RGP6_C_like C-terminal domain of 2,3-dihydro	90.5
PLN02300	286	lactoylglutathione lyase	89.9
cd07250	191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	89.79
TIGR03211	303	catechol_2_3 catechol 2,3 dioxygenase. Members of	88.81
cd07258	141	PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cuma	88.55
TIGR02295	294	HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. T	88.3
PRK06724	128	hypothetical protein; Provisional	86.82
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	86.07
TIGR01263	353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	85.42
TIGR03213	286	23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase	82.49
cd07267	113	THT_Oxygenase_N N-terminal domain of 2,4,5-trihydr	81.79
cd08344	112	MhqB_like_N N-terminal domain of MhqB, a type I ex	81.32
COG2514	265	Predicted ring-cleavage extradiol dioxygenase [Gen	80.61

>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.64  E-value=4.5e-16  Score=112.41  Aligned_cols=59  Identities=25%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             eeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC----------cccccccCcccceEEEecCCCchh
Q 034304           12 GMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETK----------RKAEKELNSRLSAPHFLSLTFPMI   71 (98)
Q Consensus        12 ~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD----------G~i~~~~~~VmHA~LmlsD~~P~~   71 (98)
                      .|+|||+|| |||++||+||++|||||++.+++++|          +++.|+..+|..+.||++|.+|..
T Consensus         1 ~l~PYl~f~-gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~   69 (136)
T COG2764           1 TLSPYLFFN-GNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDM   69 (136)
T ss_pred             CcceEEEEC-CCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCcc
Confidence            478999994 89999999999999999999999988          444444444444445999998833

>PRK10148 hypothetical protein; Provisional

Probab=99.55  E-value=1e-14  Score=104.18  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=43.9

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccc---------c----ccCcccceEE-------EecCCCc
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAE---------K----ELNSRLSAPH-------FLSLTFP   69 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~---------~----~~~~VmHA~L-------mlsD~~P   69 (98)
                      +.|+|||+|| |||+|||+||++||||+++.++++.|.+..         .    +..+||||+|       |++|.+|
T Consensus         1 m~l~pyL~f~-g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~   78 (147)
T PRK10148          1 MPLSPYLSFA-GNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIP   78 (147)
T ss_pred             CeeEEEEEeC-CCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCC
Confidence            3589999994 999999999999999999999875432210         0    1257888876       7777655

>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A

Probab=99.39  E-value=9.5e-13  Score=91.18  Aligned_cols=52  Identities=23%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE-EecCCcccccccCcccceEEEe
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR-IMETKRKAEKELNSRLSAPHFL   64 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~-~~~pDG~i~~~~~~VmHA~Lml   64 (98)
                      .+|+|||.|| |||+||++||++|||+.++.. ..+|+.... ..++||||+|.+
T Consensus         1 qki~pyL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~-~~~~v~ha~l~i   53 (116)
T PF06983_consen    1 QKITPYLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPE-WKDKVMHAELTI   53 (116)
T ss_dssp             -SEEEEEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTT-HTTSEEEEEEEE
T ss_pred             CceEEEEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCC-CCCcEEEEEEEE
Confidence            3689999995 999999999999999755444 456765432 457899999733

>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E

Probab=99.34  E-value=2.7e-12  Score=87.11  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=41.1

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCccc---ccccCcccceEE-------EecCCCc
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKA---EKELNSRLSAPH-------FLSLTFP   69 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i---~~~~~~VmHA~L-------mlsD~~P   69 (98)
                      ++|||+|| +||+|||+||+++||+++..++..++...   .....+|+||+|       |++|..|
T Consensus         1 l~p~L~~~-~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~   66 (128)
T cd06588           1 ITPYLWFN-GNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGP   66 (128)
T ss_pred             CeeEEeeC-CCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCC
Confidence            57999995 99999999999999999998887543321   112246677766       6666544

coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to

>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.55  E-value=2.9e-07  Score=60.25  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCccc
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKA   50 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i   50 (98)
                      ++|+|.|  .|.++|++||+++||.+...+...++|.+
T Consensus         1 ~~p~l~v--~d~~~a~~FY~~~lG~~~~~~~~~~~~~~   36 (122)
T cd08355           1 VWPTLRY--RDAAAAIDWLTDAFGFEERLVVPDDDGGV   36 (122)
T ss_pred             CeEEEEE--CCHHHHHHHHHHhcCCEEEEEEeCCCCcE
Confidence            5799999  79999999999999999988776556653

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=98.53  E-value=4.7e-07  Score=58.23  Aligned_cols=57  Identities=30%  Similarity=0.389  Sum_probs=42.2

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccccccCcccceEEEecCCCc
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTFP   69 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~~~~~~VmHA~LmlsD~~P   69 (98)
                      ++|.|+|.|  .|.+++++||+++||++.......++|...+.........+++.+..|
T Consensus         1 ~~~~~~l~v--~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~   57 (122)
T cd07246           1 HTVTPYLIV--RDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFP   57 (122)
T ss_pred             CceeEEEEE--CCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCc
Confidence            478999999  799999999999999998887765666544333334455666665544

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=1.3e-05  Score=59.59  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCC-EEEEEEecCCcccccccCcccceEEEecC
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGA-VEISRIMETKRKAEKELNSRLSAPHFLSL   66 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGA-eev~~~~~pDG~i~~~~~~VmHA~LmlsD   66 (98)
                      ..++|+|.|+ ++|+||.+||.+.|-- ++..+..+|++........|+++++.|++
T Consensus         4 ~kit~~L~F~-~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g   59 (151)
T COG3865           4 PKITPFLWFD-GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNG   59 (151)
T ss_pred             CcceeEEEEC-CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECC
Confidence            5789999995 9999999999999965 66667777776555455679999985554

>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=97.28  E-value=0.00047  Score=44.50  Aligned_cols=30  Identities=13%  Similarity=0.282  Sum_probs=26.5

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +++.|.|.+  .|.+++++||+++||.+....
T Consensus         1 ~~~~~~l~v--~D~~~s~~FY~~~lG~~~~~~   30 (119)
T cd08359           1 TSLYPVIVT--DDLAETADFYVRHFGFTVVFD   30 (119)
T ss_pred             CcceeEEEE--CCHHHHHHHHHHhhCcEEEec
Confidence            368899999  899999999999999987643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm

Probab=96.74  E-value=0.0022  Score=40.36  Aligned_cols=28  Identities=21%  Similarity=0.161  Sum_probs=24.4

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      .|-|.+  .|.+++++||+++||.+.....
T Consensus         1 ~~~i~v--~d~~~s~~FY~~~lg~~~~~~~   28 (112)
T cd08349           1 VPVLPV--SDIERSLAFYRDVLGFEVDWEH   28 (112)
T ss_pred             CCEEEE--CCHHHHHHHHHhccCeEEEEEc
Confidence            378999  7999999999999999876654

BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large

>PRK10291 glyoxalase I; Provisional

Probab=96.51  E-value=0.01  Score=39.40  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      |.|  .|.+++++||+++||.+.+.....+++
T Consensus         2 l~V--~Dle~s~~FY~~~LG~~~~~~~~~~~~   31 (129)
T PRK10291          2 LRV--GDLQRSIDFYTNVLGMKLLRTSENPEY   31 (129)
T ss_pred             EEe--cCHHHHHHHHHhccCCEEEEeecCCCC
Confidence            678  799999999999999988776655543

>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein

Probab=96.47  E-value=0.0068  Score=38.34  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      |.+  +|.+++++||+++||.+.+....
T Consensus         7 i~v--~d~~~~~~FY~~~lG~~~~~~~~   32 (128)
T PF00903_consen    7 IRV--KDLEKAIDFYTDVLGFRLVEESD   32 (128)
T ss_dssp             EEE--SCHHHHHHHHHHTTTSEEEEEEE
T ss_pred             EEc--CCHHHHHHHHHHHhCCcEEeeec
Confidence            677  89999999999999999988876

; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....

>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins

Probab=96.39  E-value=0.0047  Score=40.44  Aligned_cols=29  Identities=17%  Similarity=0.013  Sum_probs=25.4

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .+++|.|.+  .|.+++++||++ ||.+....
T Consensus         2 ~~~~~~l~v--~Dl~~s~~FY~~-lG~~~~~~   30 (120)
T cd08350           2 DTTIPNLPS--RDLDATEAFYAR-LGFSVGYR   30 (120)
T ss_pred             CcccceeEc--CCHHHHHHHHHH-cCCEEEec
Confidence            368899999  799999999999 99987654

BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.

>TIGR00068 glyox_I lactoylglutathione lyase

Probab=96.34  E-value=0.036  Score=38.06  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             CcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304            9 NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus         9 g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      .+.--...|.+  .|.++|++||+++||.+++.....+++
T Consensus        15 ~~~i~hv~l~v--~Dl~~a~~FY~~vLG~~~~~~~~~~~~   52 (150)
T TIGR00068        15 KRRLLHTMLRV--GDLDKSLDFYTEVLGMKLLRKRDFPEM   52 (150)
T ss_pred             CceEEEEEEEe--cCHHHHHHHHHHhcCCEEEEEeccCCC
Confidence            33444578889  899999999999999998776655544

Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.

>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.33  E-value=0.0052  Score=39.39  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEE
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEI   40 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev   40 (98)
                      +.|.|.+  .|-+++++||+++||.+..
T Consensus         2 ~~~~l~v--~Dl~~s~~FY~~~lG~~~~   27 (112)
T cd07238           2 IVPNLPV--ADPEAAAAFYADVLGLDVV   27 (112)
T ss_pred             ccceEec--CCHHHHHHHHHHhcCceEE
Confidence            5799999  7999999999999999865

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.

>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=96.07  E-value=0.014  Score=37.97  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=23.3

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEE
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEI   40 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev   40 (98)
                      ..|.|.+  .|-++|++||+++||.+..
T Consensus         4 ~~~~l~v--~D~~~a~~FY~~~lG~~~~   29 (120)
T cd09011           4 KNPLLVV--KDIEKSKKFYEKVLGLKVV   29 (120)
T ss_pred             EEEEEEE--CCHHHHHHHHHHhcCCEEe
Confidence            4589999  7999999999999999865

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A

Probab=95.93  E-value=0.014  Score=36.75  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      |.+  .|.++|++||+++||.+.+.
T Consensus         1 l~v--~d~~~a~~FY~~~lg~~~~~   23 (108)
T PF12681_consen    1 LPV--SDLEAAAAFYEDVLGFEVVF   23 (108)
T ss_dssp             EEE--SSHHHHHHHHHHTTTSEEEE
T ss_pred             Ccc--CCHHHHHHHHHHhcCCEEEE
Confidence            567  79999999999999999888

...

>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.91  E-value=0.022  Score=40.10  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -.-|.|  .|-++.|+||+++||-+++.+...|+|
T Consensus         5 Hv~irV--~DlerSi~FY~~vLG~~~~~~~~~~~~   37 (127)
T cd08358           5 HFVFKV--GNRNKTIKFYREVLGMKVLRHEEFEEG   37 (127)
T ss_pred             EEEEEe--CCHHHHHHHHHHhcCCEEEeeecCccc
Confidence            346788  899999999999999999988888874

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PLN03042 Lactoylglutathione lyase; Provisional

Probab=95.88  E-value=0.024  Score=42.23  Aligned_cols=37  Identities=11%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      |..----|.|  .|-+++|+||+++||.+++.+...+++
T Consensus        26 ~~~~Ht~i~V--~Dle~Si~FY~~vLG~~~~~r~~~~~~   62 (185)
T PLN03042         26 YIMQQTMFRI--KDPKASLDFYSRVLGMSLLKRLDFPEM   62 (185)
T ss_pred             cEEEEEEEee--CCHHHHHHHHHhhcCCEEEEEEEcCCC
Confidence            4334447888  899999999999999999888766654

>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=95.86  E-value=0.015  Score=37.04  Aligned_cols=29  Identities=17%  Similarity=0.464  Sum_probs=24.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.+  .|.+++++||+++||.+.......+
T Consensus         6 ~l~v--~d~~~a~~FY~~~lG~~~~~~~~~~   34 (126)
T cd08346           6 TLIT--RDAQETVDFYTDVLGLRLVKKTVNQ   34 (126)
T ss_pred             EEEc--CChhHhHHHHHHccCCEEeeeEecc
Confidence            5678  7999999999999999987775443

The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.83  E-value=0.018  Score=36.85  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +...|.+  .|-+++++||+++||.++..+
T Consensus         2 ~~~~l~v--~d~~~s~~Fy~~~lG~~~~~~   29 (122)
T cd08354           2 LETALYV--DDLEAAEAFYEDVLGLELMLK   29 (122)
T ss_pred             eEEEEEe--CCHHHHHHHHHhccCCEEeec
Confidence            4578899  799999999999999997754

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS)

Probab=95.69  E-value=0.018  Score=38.93  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.|  .|.+++++||+++||.+...+..
T Consensus         5 ~i~V--~D~e~s~~FY~~vLGf~~~~~~~   31 (136)
T cd08342           5 EFYV--GNAKQLASWFSTKLGFEPVAYHG   31 (136)
T ss_pred             EEEe--CCHHHHHHHHHHhcCCeEEEecC
Confidence            3678  79999999999999999887754

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su

>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione

Probab=95.65  E-value=0.021  Score=36.46  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .|.+  .|.++|++||+++||.+.......++
T Consensus         5 ~i~v--~d~~~a~~fY~~~lG~~~~~~~~~~~   34 (121)
T cd07233           5 MLRV--KDLEKSLDFYTDVLGMKLLRRKDFPE   34 (121)
T ss_pred             EEEe--cCcHHHHHHHHhccCCeEEEEEecCC
Confidence            3566  79999999999999999877655444

Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly

>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain

Probab=95.58  E-value=0.13  Score=34.25  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      .|.|  .|.++|++||+++||.+......
T Consensus         4 ~l~V--~dl~~a~~Fy~~~lG~~~~~~~~   30 (131)
T cd08343           4 VLRT--PDVAATAAFYTEVLGFRVSDRVG   30 (131)
T ss_pred             EEEc--CCHHHHHHHHHhcCCCEEEEEEc
Confidence            4677  79999999999999999876543

This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.53  E-value=0.029  Score=35.54  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=22.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.+  .|.++|++||+++||.+.....
T Consensus         8 ~l~v--~d~~~a~~fy~~~lG~~~~~~~   33 (125)
T cd08352           8 AIIC--SDYEKSKEFYVEILGFKVIREV   33 (125)
T ss_pred             EEEc--CCHHHHHHHHHHhcCCEEeeee
Confidence            4677  7999999999999999876554

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.49  E-value=0.026  Score=36.35  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         4 ~~l~v--~D~~~s~~FY~~~lG~~~~~~   29 (125)
T cd07264           4 TIIYV--EDVEKTLEFYERAFGFERRFL   29 (125)
T ss_pred             EEEEE--cCHHHHHHHHHHhhCCeEEee
Confidence            35677  799999999999999987543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PLN02367 lactoylglutathione lyase

Probab=95.46  E-value=0.055  Score=42.44  Aligned_cols=39  Identities=13%  Similarity=0.276  Sum_probs=32.4

Q ss_pred             CcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304            9 NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus         9 g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      ||.----.|.|  .|.+++|+||+++||.+.+.+...|++.
T Consensus        73 ~~~~~HtmlRV--kDle~Sl~FYt~vLGm~ll~r~d~pe~~  111 (233)
T PLN02367         73 GYIMQQTMYRI--KDPKASLDFYSRVLGMSLLKRLDFPEMK  111 (233)
T ss_pred             CcEEEEEEEEe--CCHHHHHHHHHHhcCCEEeEEEecCCCc
Confidence            45555567889  8999999999999999999988777754

>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.36  E-value=0.033  Score=35.49  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=22.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      .|.|  .|-+++++||+++||.+...+..
T Consensus         6 ~l~v--~dl~~s~~FY~~~lg~~~~~~~~   32 (125)
T cd07241           6 AIWT--KDLERMKAFYVTYFGATSNEKYH   32 (125)
T ss_pred             EEEe--cCHHHHHHHHHHHhCCEeeceEe
Confidence            5788  79999999999999998765543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.34  E-value=0.018  Score=37.91  Aligned_cols=28  Identities=14%  Similarity=0.193  Sum_probs=24.7

Q ss_pred             eeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           12 GMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        12 ~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ++.|+|.+  .|-+++++||++ ||.+....
T Consensus         2 ~~~~~l~v--~Dl~~s~~FY~~-LGf~~~~~   29 (113)
T cd08356           2 SIRPFIPA--KDFAESKQFYQA-LGFELEWE   29 (113)
T ss_pred             cceecccc--ccHHHHHHHHHH-hCCeeEec
Confidence            57899999  899999999987 99988655

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A

Probab=95.25  E-value=0.12  Score=33.89  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      ++|  .|.++|++||+++||.+.......++.
T Consensus         5 i~V--~Dl~~a~~~~~~~lG~~~~~~~~~~~~   34 (109)
T PF13669_consen    5 IVV--PDLDAAAAFYCDVLGFEPWERYRDEPQ   34 (109)
T ss_dssp             EEE--S-HHHHHHHHHHCTTHEEEEEEEEGCT
T ss_pred             EEc--CCHHHHHHHHHHhhCCcEEEEEecCCC
Confidence            578  799999999999999987766655443

>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=95.15  E-value=0.043  Score=34.29  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      |.+  .|.+++++||+++||.+......
T Consensus         4 l~v--~d~~~~~~fY~~~lG~~~~~~~~   29 (119)
T cd07263           4 LYV--DDQDKALAFYTEKLGFEVREDVP   29 (119)
T ss_pred             EEe--CCHHHHHHHHHhccCeEEEEeec
Confidence            667  79999999999999998876654

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase

Probab=95.03  E-value=0.048  Score=35.11  Aligned_cols=29  Identities=17%  Similarity=0.164  Sum_probs=23.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.|  .|.+++++||+++||.+.......+
T Consensus         6 ~l~v--~D~~~s~~FY~~~lG~~~~~~~~~~   34 (128)
T TIGR03081         6 GIAV--PDLEEAAKLYEDVLGAHVSHIEEVP   34 (128)
T ss_pred             EEEe--CCHHHHHHHHHHHhCCCCccceeCC
Confidence            4678  7999999999999999886654333

Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.

>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin

Probab=94.79  E-value=0.044  Score=34.77  Aligned_cols=25  Identities=32%  Similarity=0.495  Sum_probs=21.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.+++++||+++||.+...+
T Consensus         3 ~l~v--~d~~~s~~Fy~~~lg~~~~~~   27 (113)
T cd08345           3 TLIV--KDLNKSIAFYRDILGAELIYS   27 (113)
T ss_pred             eEEE--CCHHHHHHHHHHhcCCeeeec
Confidence            4677  799999999999999887544

This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>TIGR03645 glyox_marine lactoylglutathione lyase family protein

Probab=94.62  E-value=0.043  Score=38.80  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -|.|  .|-++|++||+++||.+.+.
T Consensus         9 ~i~V--~Dle~s~~FY~~~LG~~~~~   32 (162)
T TIGR03645         9 GISV--PDLDAAVKFYTEVLGWYLIM   32 (162)
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEe
Confidence            5788  89999999999999998764

Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.

>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=94.61  E-value=0.056  Score=34.18  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      .|.+  .|.+++++||+++||.+.....
T Consensus         8 ~l~v--~d~~~s~~Fy~~~lG~~~~~~~   33 (125)
T cd07253           8 VLTV--ADIEATLDFYTRVLGMEVVRFG   33 (125)
T ss_pred             EEEe--cCHHHHHHHHHHHhCceeeccc
Confidence            5677  7999999999999998876543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=94.54  E-value=0.074  Score=34.37  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             eeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           13 MKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        13 ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +.+.|.+  .|.+++++||+++||.+....
T Consensus         3 ~hv~l~v--~d~~~a~~FY~~~lG~~~~~~   30 (120)
T cd07254           3 FHVALNV--DDLEASIAFYSKLFGVEPTKV   30 (120)
T ss_pred             EEEEEEe--CCHHHHHHHHHHHhCCeEecc
Confidence            5577899  799999999999999976544

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase

Probab=94.53  E-value=0.077  Score=36.69  Aligned_cols=30  Identities=10%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      |.|  .|-+++++||+++||.++..++..++|
T Consensus        12 l~v--~Dle~s~~FY~~vLGf~~~~~~~~~~~   41 (143)
T cd07243          12 LTG--EDIAETTRFFTDVLDFYLAERVVDPDG   41 (143)
T ss_pred             Eec--CCHHHHHHHHHHhcCCEEEEEEecCCC
Confidence            677  799999999999999988777644443

This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.

>PRK11478 putative lyase; Provisional

Probab=94.19  E-value=0.058  Score=35.08  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+....
T Consensus        11 ~l~v--~D~~~a~~FY~~~LG~~~~~~   35 (129)
T PRK11478         11 AIIA--TDYAVSKAFYCDILGFTLQSE   35 (129)
T ss_pred             EEEc--CCHHHHHHHHHHHhCCEeccc
Confidence            4667  799999999999999887543

>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=94.17  E-value=0.076  Score=34.56  Aligned_cols=26  Identities=27%  Similarity=0.546  Sum_probs=22.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .-|.+  .|-+++++||+++||.+.+.+
T Consensus        10 v~l~v--~dl~~a~~FY~~~lG~~~~~~   35 (121)
T cd09013          10 VELLT--PKPEESLWFFTDVLGLEETGR   35 (121)
T ss_pred             EEEEe--CCHHHHHHHHHhCcCCEEEee
Confidence            35677  799999999999999987655

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C

>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins

Probab=94.06  E-value=0.092  Score=33.59  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         7 v~l~v--~d~~~s~~FY~~~lG~~~~~~   32 (120)
T cd08362           7 VGLGV--PDLAAAAAFYREVWGLSVVAE   32 (120)
T ss_pred             EEEec--CCHHHHHHHHHhCcCcEEEEe
Confidence            35777  799999999999999987543

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway

Probab=94.04  E-value=0.1  Score=36.40  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEec
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIME   45 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~   45 (98)
                      |.|  .|-+++++||+++||.+.......
T Consensus         7 l~V--~Dle~a~~FY~~~LG~~~~~~~~~   33 (153)
T cd07257           7 LEV--PDFAASFDWYTETFGLKPSDVIYL   33 (153)
T ss_pred             Eec--CCHHHHHHHHHHhcCCeEEeeEec
Confidence            667  799999999999999987655443

This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins

Probab=93.94  E-value=0.077  Score=34.84  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=21.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      .-|.|  .|-++|++||+++||.+...
T Consensus         8 v~l~v--~Dl~~s~~FY~~~lG~~~~~   32 (123)
T cd08351           8 TIVPA--RDREASAEFYAEILGLPWAK   32 (123)
T ss_pred             EEEEc--CCHHHHHHHHHHhcCCEeee
Confidence            46778  89999999999999988754

ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]

Probab=93.93  E-value=0.093  Score=32.15  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      .-|.|  .|-+++++||+++||.+.+....
T Consensus         6 v~l~v--~dl~~s~~FY~~~LG~~~~~~~~   33 (138)
T COG0346           6 VTLAV--PDLEASIDFYTDVLGLRLVKDTV   33 (138)
T ss_pred             EEEee--CCHhHhHHHHHhhcCCeeeeecc
Confidence            45778  79999999999999999887764

>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases

Probab=93.87  E-value=0.11  Score=36.55  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=21.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.|  .|-+++++||+++||.+.....
T Consensus         8 ~l~V--~Dl~~s~~FY~~vLGl~~~~~~   33 (161)
T cd07256           8 NLRV--PDVDAGLAYYRDELGFRVSEYT   33 (161)
T ss_pred             EEec--CCHHHHHHHHHhccCCEEEEEe
Confidence            3677  7999999999999999876544

This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of

>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.80  E-value=0.062  Score=34.32  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      .|.+  .|-++|++||+++||.+...
T Consensus         3 ~l~v--~d~~~a~~FY~~~lg~~~~~   26 (114)
T cd07261           3 LLYV--EDPAASAEFYSELLGREPVE   26 (114)
T ss_pred             EEEE--CCHHHHHHHHHHHcCCCccC
Confidence            4678  79999999999999977543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=93.76  E-value=0.097  Score=34.02  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=22.3

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.|  .|-+++++||+++||.+....
T Consensus         8 v~l~v--~Dl~~s~~FY~~~lG~~~~~~   33 (122)
T cd07265           8 VQLRV--LDLEEAIKHYREVLGLDEVGR   33 (122)
T ss_pred             EEEEe--CCHHHHHHHHHhccCCEeeee
Confidence            46788  799999999999999987654

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp

Probab=93.74  E-value=0.1  Score=35.08  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .|.+++++||+++||.+....
T Consensus         8 ~l~v--~dl~~s~~FY~~vlGl~~~~~   32 (134)
T cd08360           8 VLFV--PDVEAAEAFYRDRLGFRVSDR   32 (134)
T ss_pred             EEEc--CCHHHHHHHHHHhcCCEEEEE
Confidence            4677  799999999999999987654

NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain

Probab=93.67  E-value=0.12  Score=32.74  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|-+++++||+++||.+....
T Consensus         7 ~l~v--~d~~~~~~FY~~~lg~~~~~~   31 (117)
T cd07240           7 ELEV--PDLERALEFYTDVLGLTVLDR   31 (117)
T ss_pred             EEec--CCHHHHHHHHHhccCcEEEee
Confidence            4667  799999999999999987654

This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa

>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.63  E-value=0.074  Score=33.75  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.++|.+||+++||.+...+
T Consensus         3 ~l~v--~d~~~a~~FY~~~lg~~~~~~   27 (121)
T cd07251           3 TLGV--ADLARSRAFYEALLGWKPSAD   27 (121)
T ss_pred             eEee--CCHHHHHHHHHHhcCceeccc
Confidence            4678  799999999999999987655

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.42  E-value=0.12  Score=33.49  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=18.6

Q ss_pred             EEEEecCCHHHHHHHHHHhh---CCEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAF---GAVEI   40 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AF---GAeev   40 (98)
                      -|.+  .|.+++++||+++|   |.+.+
T Consensus         5 ~l~v--~d~~~s~~FY~~~f~~lg~~~~   30 (123)
T cd07262           5 TLGV--NDLERARAFYDAVLAPLGIKRV   30 (123)
T ss_pred             EEec--CcHHHHHHHHHHHHhhcCceEE
Confidence            4677  79999999999996   55554

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=93.41  E-value=0.1  Score=34.25  Aligned_cols=26  Identities=19%  Similarity=0.049  Sum_probs=21.9

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.|  .|-++|++||+++||.+...+
T Consensus         6 v~l~v--~Dl~~s~~FY~~~LG~~~~~~   31 (120)
T cd07252           6 LGVES--SDLDAWRRFATDVLGLQVGDR   31 (120)
T ss_pred             EEEEe--CCHHHHHHHHHhccCceeccC
Confidence            45788  799999999999999987543

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-

>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=93.39  E-value=0.13  Score=32.96  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.7

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      |.|  .|-+++++||+++||.+...
T Consensus         5 l~v--~Dl~~s~~FY~~~lG~~~~~   27 (125)
T cd08357           5 IPV--RDLEAARAFYGDVLGCKEGR   27 (125)
T ss_pred             EEe--CCHHHHHHHHHHhcCCEEee
Confidence            566  79999999999999998643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp

Probab=93.28  E-value=0.17  Score=35.83  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=24.6

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      -|.|  .|-+++++||+++||.+.......++
T Consensus        11 ~l~V--~Dle~a~~FY~~vLG~~~~~~~~~~~   40 (166)
T cd09014          11 NLLA--SDVDANRDFMEEVLGFRLREQIRLDN   40 (166)
T ss_pred             EEEc--CCHHHHHHHHHHccCCEEEEEEecCC
Confidence            4778  79999999999999999877655443

JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th

>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive

Probab=93.27  E-value=0.15  Score=33.30  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+....
T Consensus         6 ~l~v--~d~~~~~~FY~~vLG~~~~~~   30 (121)
T cd07244           6 TLAV--SDLERSVAFYVDLLGFKLHVR   30 (121)
T ss_pred             EEEE--CCHHHHHHHHHHhcCCEEEEe
Confidence            4677  799999999999999986543

This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains

Probab=93.13  E-value=0.13  Score=32.69  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         4 i~l~v--~d~~~s~~FY~~~lG~~~~~~   29 (114)
T cd07247           4 FELPT--TDPERAKAFYGAVFGWTFEDM   29 (114)
T ss_pred             EEeeC--CCHHHHHHHHHhccCceeeec
Confidence            35677  799999999999999877543

SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)

Probab=93.10  E-value=0.17  Score=32.29  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEec
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIME   45 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~   45 (98)
                      .|.+  .|.+++.+||+++||.+.......
T Consensus         5 ~l~v--~d~~~~~~fy~~~lG~~~~~~~~~   32 (128)
T cd07249           5 GIAV--PDLEAAIKFYRDVLGVGPWEEEEV   32 (128)
T ss_pred             EEEe--CCHHHHHHHHHHhhCCCCcccccc
Confidence            4677  799999999999999988765543

MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.

>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1

Probab=93.00  E-value=0.19  Score=33.03  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.+++++||+++||.+....
T Consensus         6 ~l~v--~D~~~s~~FY~~~lG~~~~~~   30 (134)
T cd08348           6 VLYV--RDLEAMVRFYRDVLGFTVTDR   30 (134)
T ss_pred             EEEe--cCHHHHHHHHHHhcCCEEEee
Confidence            5677  799999999999999886544

13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are

>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins

Probab=92.97  E-value=0.2  Score=29.99  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      +.+  .|.+++++||+++||.+......
T Consensus         4 i~~--~d~~~~~~fy~~~lg~~~~~~~~   29 (112)
T cd06587           4 LTV--SDLEAAVAFYEEVLGFEVLFRNG   29 (112)
T ss_pred             eee--CCHHHHHHHHHhccCCEEEEeec
Confidence            456  79999999999999998766653

This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas

>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=92.97  E-value=0.095  Score=32.13  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      |.+  .|.+++++||+++||.+....
T Consensus         6 l~v--~d~~~~~~FY~~~lG~~~~~~   29 (114)
T cd07245           6 LRV--PDLEASRAFYTDVLGLEEGPR   29 (114)
T ss_pred             Eec--CCHHHHHHHHHHccCCcccCc
Confidence            566  799999999999999876543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.

>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=92.73  E-value=0.18  Score=32.47  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+....
T Consensus         7 ~l~v--~d~~~~~~Fy~~~lG~~~~~~   31 (125)
T cd07255           7 TLRV--ADLERSLAFYQDVLGLEVLER   31 (125)
T ss_pred             EEEE--CCHHHHHHHHHhccCcEEEEc
Confidence            4677  799999999999999887655

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=92.68  E-value=0.2  Score=32.74  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..-|.|  .|-+++++||++ ||.+....
T Consensus         3 ~v~l~V--~Dl~~s~~FY~~-lGf~~~~~   28 (124)
T cd09012           3 FINLPV--KDLEKSTAFYTA-LGFEFNPQ   28 (124)
T ss_pred             EEEeec--CCHHHHHHHHHH-CCCEEccc
Confidence            456888  799999999976 99987643

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=92.64  E-value=0.24  Score=37.67  Aligned_cols=31  Identities=10%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -|.|  .|-+++++||+++||.+...+...+++
T Consensus       150 ~l~V--~Dl~~s~~FY~~~LG~~~~~~~~~~~~  180 (303)
T TIGR03211       150 LLYG--EDVAENTRFFTEVLGFRLTEQVVLGDG  180 (303)
T ss_pred             eEEe--CCHHHHHHHHHHhcCCEEEeeEEcCCC
Confidence            3777  799999999999999998776655544

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases

Probab=92.50  E-value=0.15  Score=32.79  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      .-|.+  .|-+++++||+++||.+...
T Consensus         8 i~l~v--~d~~~~~~Fy~~~lG~~~~~   32 (121)
T cd07266           8 VELRV--TDLEKSREFYVDVLGLVETE   32 (121)
T ss_pred             EEEEc--CCHHHHHHHHHhccCCEEec
Confidence            45777  79999999999999998653

This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ

>PRK04101 fosfomycin resistance protein FosB; Provisional

Probab=92.44  E-value=0.2  Score=33.92  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.+  .|.+++++||+++||.+.+.
T Consensus         8 i~L~v--~Dl~~s~~FY~~~lG~~~~~   32 (139)
T PRK04101          8 ICFSV--SNLEKSIEFYEKVLGAKLLV   32 (139)
T ss_pred             EEEEe--cCHHHHHHHHHhccCCEEEe
Confidence            36778  79999999999999998764

>PLN02300 lactoylglutathione lyase

Probab=92.31  E-value=0.26  Score=37.70  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      .-|.|  .|-+++++||+++||.+...+..
T Consensus        28 v~l~V--~Dle~s~~FY~~vLG~~~~~~~~   55 (286)
T PLN02300         28 VVYRV--GDLDRTIKFYTECLGMKLLRKRD   55 (286)
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEEeee
Confidence            35778  79999999999999998876543

>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]

Probab=92.27  E-value=0.12  Score=37.32  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=17.7

Q ss_pred             CCHHHHHHHHHHhhCCEEEEE
Q 034304           22 SKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~   42 (98)
                      +|-++|++||++|||=+....
T Consensus        18 ~D~~ra~~FY~~vFgW~~~~~   38 (127)
T COG3324          18 SDLERAKAFYEKVFGWTFEDY   38 (127)
T ss_pred             CCHHHHHHHHHHhhCceeccc
Confidence            899999999999999655443

>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins

Probab=92.25  E-value=0.19  Score=34.82  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|-+++++||+++||.++...
T Consensus         9 ~i~V--~Dle~s~~FY~~~LG~~~~~~   33 (144)
T cd07239           9 VLNS--PDVDKTVAFYEDVLGFRVSDW   33 (144)
T ss_pred             EEEC--CCHHHHHHHHHhcCCCEEEEe
Confidence            3567  799999999999999987544

2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio

>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=92.10  E-value=0.32  Score=31.52  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             EEEEecCCHHHHHHHHHHhh---CCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAF---GAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AF---GAeev~~~   43 (98)
                      .+.+  .|.+++++||+++|   |-+.....
T Consensus         6 ~i~v--~d~~~~~~Fy~~~l~~~G~~~~~~~   34 (128)
T cd07242           6 ELTV--RDLERSRAFYDWLLGLLGFEEVKEW   34 (128)
T ss_pred             EEEe--CCHHHHHHHHHHHHhhcCCEEEEee
Confidence            5677  79999999999999   99876653

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1

Probab=91.94  E-value=0.27  Score=33.05  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .|-+++++||+++||.+++..
T Consensus         9 ~l~V--~dl~~s~~FY~~~lG~~~~~~   33 (131)
T cd08364           9 TLIV--KDLNKTTAFLQNIFNAREVYS   33 (131)
T ss_pred             EEEe--CCHHHHHHHHHHHhCCeeEEe
Confidence            3677  799999999999999876544

This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.

>cd07235 MRD Mitomycin C resistance protein (MRD)

Probab=91.89  E-value=0.19  Score=32.36  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=17.7

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEI   40 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev   40 (98)
                      |.|  .|-++|++||++ ||.+..
T Consensus         6 l~V--~D~~~a~~FY~~-LGf~~~   26 (122)
T cd07235           6 IVV--ADMAKSLDFYRR-LGFDFP   26 (122)
T ss_pred             EEe--ccHHHHHHHHHH-hCceec
Confidence            678  799999999975 998754

Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=91.57  E-value=0.35  Score=36.36  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=23.4

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.|  .|-+++++||+++||.+...+...+
T Consensus       141 ~l~v--~dl~~a~~Fy~~~lG~~~~~~~~~~  169 (294)
T TIGR02295       141 NVFV--PDVQRALRFYKEELGFRVTEYTEDD  169 (294)
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEEeccC
Confidence            3677  7999999999999999887665433

The enzyme from Bacillus brevis contains manganese.

>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=91.32  E-value=0.23  Score=32.96  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=21.7

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|-+++++||++++|.+....
T Consensus        10 v~l~v--~d~~~s~~FY~~vLG~~~~~~   35 (124)
T cd08361          10 VRLGT--RDLAGATRFATDILGLQVAER   35 (124)
T ss_pred             EEEee--CCHHHHHHHHHhccCceeccC
Confidence            45677  799999999999999987543

This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin

Probab=91.13  E-value=0.3  Score=32.87  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -|.|  .|-+++++||+++||.+...
T Consensus         5 ~l~V--~Dl~~a~~FY~~~LG~~~~~   28 (131)
T cd08363           5 TFSV--SNLDKSISFYKHVFMEKLLV   28 (131)
T ss_pred             EEEE--CCHHHHHHHHHHhhCCEEec
Confidence            3667  79999999999999987643

This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=91.11  E-value=0.26  Score=32.77  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.|  .|.+++++||++ ||.+......
T Consensus         8 ~i~v--~Dl~~s~~FY~~-LG~~~~~~~~   33 (142)
T cd08353           8 GIVV--RDLEAAIAFFLE-LGLELEGRAE   33 (142)
T ss_pred             EEEe--CCHHHHHHHHHH-cCCEEccccc
Confidence            4678  799999999998 9987765543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.

>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins

Probab=90.72  E-value=0.42  Score=33.80  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=21.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.|  .|-+++.+||+++||.+...+.
T Consensus         6 ~i~V--~Dle~s~~FY~~~LG~~~~~~~   31 (157)
T cd08347           6 TLTV--RDPEATAAFLTDVLGFREVGEE   31 (157)
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEeee
Confidence            3677  7999999999999999876553

The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.

>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1

Probab=90.50  E-value=0.43  Score=33.24  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.+  .|-+++++||+++||.+...+.
T Consensus        14 ~l~v--~Dl~~a~~FY~~~LGl~~~~~~   39 (154)
T cd07237          14 VLAT--PDPDEAHAFYRDVLGFRLSDEI   39 (154)
T ss_pred             EEEe--CCHHHHHHHHHHccCCEEEEEE
Confidence            5678  7999999999999999876553

13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi

>PLN02300 lactoylglutathione lyase

Probab=89.90  E-value=0.52  Score=36.08  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ..|.+  .|.++|++||+++||.+...+...|+
T Consensus       158 ~~l~~--~d~~~a~~Fy~~~lg~~~~~~~~~~~  188 (286)
T PLN02300        158 VMLRV--GDLDRSIKFYEKAFGMKLLRKRDNPE  188 (286)
T ss_pred             EEEEe--CCHHHHHHHHHhccCCEEEeeecccc
Confidence            35677  79999999999999999876555454

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)

Probab=89.79  E-value=0.42  Score=35.09  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           22 SKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      +|-++|++||+++||.+.......++
T Consensus        14 ~dl~~a~~fY~~~LGf~~~~~~~~~~   39 (191)
T cd07250          14 GEMDSWVDFYRKVLGFHRFWSFDIED   39 (191)
T ss_pred             hHHHHHHHHHHHhhCCceeeEEccCc
Confidence            39999999999999999877765443

HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,

>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase

Probab=88.81  E-value=0.6  Score=35.44  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.|  .|-+++++||+++||.+...+
T Consensus         8 i~l~V--~Dle~s~~FY~~~LG~~~~~~   33 (303)
T TIGR03211         8 VELRV--LDLEESLKHYTDVLGLEETGR   33 (303)
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEeee
Confidence            46778  799999999999999987644

Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.

>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC)

Probab=88.55  E-value=0.7  Score=32.11  Aligned_cols=25  Identities=12%  Similarity=-0.055  Sum_probs=21.6

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      |.|  .|-+++++||+++||.+++.+.
T Consensus         5 l~V--~Dle~s~~Fy~~vLG~~~~~~~   29 (141)
T cd07258           5 IGS--ENFEASRDSLVEDFGFRVSDLI   29 (141)
T ss_pred             Eec--CCHHHHHHHHHhcCCCEeeeee
Confidence            567  7999999999999999976653

This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase

Probab=88.30  E-value=0.85  Score=34.29  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         8 v~l~v--~Dl~~s~~FY~~vLGl~~~~~   33 (294)
T TIGR02295         8 VELRV--TDLDKSREFYVDLLGFRETES   33 (294)
T ss_pred             EEEEe--CCHHHHHHHHHHccCCEEEEe
Confidence            46788  899999999999999987644

The enzyme from Bacillus brevis contains manganese.

>PRK06724 hypothetical protein; Provisional

Probab=86.82  E-value=1.4  Score=30.12  Aligned_cols=18  Identities=28%  Similarity=0.586  Sum_probs=15.9

Q ss_pred             EEEecCCHHHHHHHHHHhhC
Q 034304           17 LLVEASKAIDAIQFYKTAFG   36 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFG   36 (98)
                      |.|  .|=+++++||+++||
T Consensus        13 l~V--~Dle~s~~FY~~vlg   30 (128)
T PRK06724         13 FWV--ANLEESISFYDMLFS   30 (128)
T ss_pred             EEe--CCHHHHHHHHHHHHh
Confidence            677  799999999999884

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=86.07  E-value=1.2  Score=33.62  Aligned_cols=28  Identities=25%  Similarity=0.209  Sum_probs=23.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEec
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIME   45 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~   45 (98)
                      -|.+  .|-+++++||+++||.+...++..
T Consensus       147 ~l~v--~Dle~s~~FY~~~LGf~~~~~~~~  174 (286)
T TIGR03213       147 VLRV--PDVDAALAFYTEVLGFQLSDVIDL  174 (286)
T ss_pred             EEEc--CCHHHHHHHHHHccCCeEEEeEcc
Confidence            4677  799999999999999998766543

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase

Probab=85.42  E-value=3  Score=33.20  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=32.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccccccCcccceEEEecC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSL   66 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~~~~~~VmHA~LmlsD   66 (98)
                      +.+.|  .|+++|++||.++||.+...+...+++.. ....+.....|+|+.
T Consensus         6 i~~~V--~D~~~a~~~y~~~LGf~~~~~~~~~~~~~-~~~~~~G~~~l~L~~   54 (353)
T TIGR01263         6 VEFYV--GDAKQAAYYYFTRFGFEKVAKETGHREKA-SHVLRQGQINFVLTA   54 (353)
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCcEEEEeecCCcee-EEEEEeCCEEEEEec
Confidence            56788  89999999999999999887743333321 111234455666654

This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.

>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase

Probab=82.49  E-value=1.2  Score=33.66  Aligned_cols=25  Identities=24%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.|  .|-+++++||+++||.+++.
T Consensus         7 v~l~V--~Dl~~s~~FY~~~LGl~~~~   31 (286)
T TIGR03213         7 LGIGV--SDVDAWREFATEVLGMMVAS   31 (286)
T ss_pred             EEEEe--CCHHHHHHHHHhccCccccc
Confidence            35777  89999999999999988654

Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.

>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase

Probab=81.79  E-value=2.1  Score=27.55  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=18.9

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      |.+  .|-+++.+||++ ||-+...+
T Consensus         9 l~v--~Dl~~s~~FY~~-lGl~~~~~   31 (113)
T cd07267           9 FEH--PDLDKAERFLTD-FGLEVAAR   31 (113)
T ss_pred             Ecc--CCHHHHHHHHHH-cCCEEEEe
Confidence            556  799999999999 99877544

This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.

>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins

Probab=81.32  E-value=2.2  Score=27.40  Aligned_cols=23  Identities=35%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -|.+  .|-+++.+||+ .||.+...
T Consensus         7 ~l~v--~d~~~s~~FY~-~lG~~~~~   29 (112)
T cd08344           7 ALEV--PDLEVARRFYE-AFGLDVRE   29 (112)
T ss_pred             EEec--CCHHHHHHHHH-HhCCcEEe
Confidence            3566  79999999997 69998754

This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.

>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]

Probab=80.61  E-value=2.2  Score=34.39  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=23.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -+|.|  +|..||=+||+++||-+.+.+
T Consensus       172 vHL~v--~~l~eA~~fY~~~LG~~~~~~  197 (265)
T COG2514         172 VHLKV--ADLEEAEQFYEDVLGLEVTAR  197 (265)
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCeeeec
Confidence            58999  999999999999999888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
1xy7_A	166	X-Ray Structure Of Gene Product From Arabidopsis Th		6e-07

>pdb|1XY7|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At5g48480 Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLS 65
          F   K  LLVEA K  DA+ FYK+AFGA+E    +  KRK ++EL      PH LS
Sbjct: 23 FTEFKQXLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQEL------PHVLS 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
1xy7_A	166	Unknown protein; structural genomics, protein stru	6e-07
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	1e-04

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A Length = 166

 Score = 44.3 bits (104), Expect = 6e-07
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 2  AAPATSANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAE 51
              T   F   K  LLVEA K  DA+ FYK+AFGA+E    +  KRK +
Sbjct: 15 GPVETHLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLD 64

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7 Length = 136

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 11 MGMKLQ--LLVEASKAIDAIQFYKTAFGAVEISRIM 44
          M  +++  L+ +  +A  A+ FY + F   EI +I 
Sbjct: 3  MSARVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQ 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
1u69_A	163	Hypothetical protein; structural genomics, MSCG, p	99.51
3oms_A	138	PHNB protein; structural genomics, PSI-2, protein	99.5
3l20_A	172	Putative uncharacterized protein; hypothetical pro	99.3
1tsj_A	139	Conserved hypothetical protein; structural genomic	99.22
1u6l_A	149	Hypothetical protein; structural genomics, PSI, pr	98.98
1u7i_A	136	Hypothetical protein; structural genomics, PA1358,	98.91
1xy7_A	166	Unknown protein; structural genomics, protein stru	98.86
3itw_A	137	Protein TIOX; bleomycin resistance fold, bisinterc	98.21
3fcd_A	134	Lyase, ORF125EGC139; lactoylglutathione lyase, YEC	97.49
4hc5_A	133	Glyoxalase/bleomycin resistance protein/dioxygena;	97.01
1f9z_A	135	Glyoxalase I; beta-alpha-beta-BETA-beta motif, pro	96.93
2rk9_A	145	Glyoxalase/bleomycin resistance protein/dioxygena;	96.87
1qto_A	122	Bleomycin-binding protein; arm-exchange, antibioti	96.77
3l7t_A	134	SMU.1112C, putative uncharacterized protein; metal	96.76
3r6a_A	144	Uncharacterized protein; PSI biology, structural g	96.65
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	96.57
2zw5_A	301	Bleomycin acetyltransferase; dimer, two domains; H	96.53
3m2o_A	164	Glyoxalase/bleomycin resistance protein; unknown f	96.53
3rmu_A	134	Methylmalonyl-COA epimerase, mitochondrial; struct	96.52
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	96.52
1xrk_A	124	Bleomycin resistance protein; arm exchange, ligand	96.47
3oa4_A	161	Glyoxalase, BH1468 protein; structural genomics, p	96.41
2p25_A	126	Glyoxalase family protein; structural genomics, MC	96.29
3vw9_A	187	Lactoylglutathione lyase; glyoxalase, lyase-lyase	96.25
2rk0_A	136	Glyoxalase/bleomycin resistance protein/dioxygena;	96.21
1jc4_A	148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	96.2
2c21_A	144	Trypanothione-dependent glyoxalase I; lyase, gluta	96.02
1ecs_A	126	Bleomycin resistance protein; arm-exchange, antibi	95.99
3bt3_A	148	Glyoxalase-related enzyme, ARAC type; VOC superfam	95.94
2i7r_A	118	Conserved domain protein; structural genomics cons	95.94
3ghj_A	141	Putative integron gene cassette protein; integron	95.87
3gm5_A	159	Lactoylglutathione lyase and related lyases; sheet	95.53
2za0_A	184	Glyoxalase I; lyase, lactoylglutathione lyase, met	95.5
3ey7_A	133	Biphenyl-2,3-DIOL 1,2-dioxygenase III-related prot	95.29
2pjs_A	119	AGR_C_3564P, uncharacterized protein ATU1953; glyo	95.27
3huh_A	152	Virulence protein STM3117; structural genomics, ny	95.18
2qnt_A	141	AGR_C_3434P, uncharacterized protein ATU1872; glyo	95.03
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	95.01
1xqa_A	113	Glyoxalase/bleomycin resistance protein; dioxygena	94.95
1twu_A	139	Hypothetical protein YYCE; structural genomics, pr	94.9
3bqx_A	150	Glyoxalase-related enzyme; VOC superfamily, PSI-2,	94.9
2p7o_A	133	Glyoxalase family protein; fosfomycin resistance p	94.8
3rhe_A	148	NAD-dependent benzaldehyde dehydrogenase; structur	94.78
1r9c_A	139	Glutathione transferase; fosfomycin resistance pro	94.76
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	94.72
2kjz_A	144	ATC0852; protein of unknown function, dimer, struc	94.58
2r6u_A	148	Uncharacterized protein; structural genomics, PSI-	94.56
3kol_A	156	Oxidoreductase, glyoxalase/bleomycin resistance pr	94.51
3sk2_A	132	EHPR; antibiotic resistance, griseoluteate-binding	94.47
3zw5_A	147	Glyoxalase domain-containing protein 5; lyase; 1.6	94.41
3rri_A	135	Glyoxalase/bleomycin resistance protein/dioxygena;	94.4
1nki_A	135	Probable fosfomycin resistance protein; potassium	94.3
3r4q_A	160	Lactoylglutathione lyase; structural genomics, PSI	94.3
1npb_A	141	Fosfomycin-resistance protein; manganese binding,	94.2
3uh9_A	145	Metallothiol transferase FOSB 2; structural genomi	94.12
3hdp_A	133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	94.0
1ss4_A	153	Glyoxalase family protein; structural genomics, PS	93.3
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	93.2
2a4x_A	138	Mitomycin-binding protein; ALFA/beta protein, mito	92.74
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	92.49
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	92.36
3zi1_A	330	Glyoxalase domain-containing protein 4; isomerase;	92.02
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	91.77
3ct8_A	146	Protein BH2160, putative glyoxalase; NP_243026.1,	91.67
2qqz_A	126	Glyoxalase family protein, putative; alpha-beta st	91.63
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	91.4
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	91.15
3hpy_A	309	Catechol 2,3-dioxygenase; repeated motifs, aromati	91.05
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	90.96
1kw3_B	292	2,3-dihydroxybiphenyl dioxygenase; four TIME repet	90.68
1mpy_A	307	Catechol 2,3-dioxygenase; extradiol dioxygenase, n	90.51
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	90.51
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	90.42
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	90.32
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	89.84
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	89.81
1lgt_A	297	Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxy	89.76
3oxh_A	282	RV0577 protein; kinase regulation, antibiotic resi	89.57
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	89.38
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	89.19
2zyq_A	300	Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; e	89.14
1zsw_A	338	Metallo protein, glyoxalase family protein; hypoth	88.89
3isq_A	393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	88.84
3b59_A	310	Glyoxalase/bleomycin resistance protein/dioxygena;	88.14
1t47_A	381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	87.89
4ghg_A	365	Homoprotocatechuate 2,3-dioxygenase; oxygen activa	87.88
3lm4_A	339	Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein	87.79
1f1u_A	323	Homoprotocatechuate 2,3-dioxygenase; extradiol, ma	87.49
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	87.19
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	86.54
2ehz_A	302	1,2-dihydroxynaphthalene dioxygenase; extradiol di	86.44
4gym_A	149	Glyoxalase/bleomycin resistance protein/dioxygena;	86.35
1sqd_A	424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	86.3
3pkv_A	252	Toxoflavin lyase (TFLA); metalloenzyme, vicinal ox	86.14
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	85.98
3e0r_A	244	C3-degrading proteinase (CPPA protein); MCSG, PSI,	85.95
2r5v_A	357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	83.84
2wl9_A	305	Catechol 2,3-dioxygenase; aromatic hydrocarbons ca	81.6
3oaj_A	335	Putative ring-cleaving dioxygenase MHQO; structura	80.59
1sp8_A	418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	80.54

>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=99.51  E-value=3e-14  Score=103.22  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhh-CCEEEEEEecCCcccccccCcccceEE-------EecCCCc
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAF-GAVEISRIMETKRKAEKELNSRLSAPH-------FLSLTFP   69 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AF-GAeev~~~~~pDG~i~~~~~~VmHA~L-------mlsD~~P   69 (98)
                      +.+|+|||.|+ |||+|||+||++|| |+++..+++++|.+...+..+||||+|       |++|..|
T Consensus         4 M~~i~PyL~f~-g~a~eAi~FY~~vF~ga~i~~~~~~~~~~~~~~~g~Vmhael~i~g~~~m~~d~~p   70 (163)
T 1u69_A            4 NSKNTICLWYD-SAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGGP   70 (163)
T ss_dssp             -CCEEEEEEES-SCHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTTSEEEEEEEETTEEEEEEECCT
T ss_pred             CCceeEEEEEC-CCHHHHHHHHHHHhCCCEEeEEEeccCCCCCCCCCeEEEEEEEECCEEEEEECCCC
Confidence            34799999994 89999999999999 999998888866432222356777776       7777655

>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0

Probab=99.50  E-value=2e-14  Score=99.87  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             CCCCCcceeeEEEEEecCCHHHHHHHHHHhhC-CEEEEEEecCCcccccccCcccceEE-------EecCCCc
Q 034304            5 ATSANFMGMKLQLLVEASKAIDAIQFYKTAFG-AVEISRIMETKRKAEKELNSRLSAPH-------FLSLTFP   69 (98)
Q Consensus         5 ~~~~g~~~ltPYL~v~ngdA~eAIeFYk~AFG-Aeev~~~~~pDG~i~~~~~~VmHA~L-------mlsD~~P   69 (98)
                      |.++++++|+|||+|+ |||+|||+||+++|| +++..+++++|.+. ....+||||+|       |++|..|
T Consensus         3 ~m~~~~~~i~P~L~f~-g~a~eA~~FY~~vFg~~~i~~~~~~~~~~~-~~~g~v~ha~l~i~g~~lm~~d~~~   73 (138)
T 3oms_A            3 AMSNANQKITTFLMFE-GKAEEAMNFYTSLFDQSEIVSISRYDENGP-GKEGTVIHATFTLNGQEFMCIDSYV   73 (138)
T ss_dssp             ------CCCCEEEEES-SCHHHHHHHHHTTSTTCCEEEEEECCTTCS-SCTTSEEEEEEEETTEEEEEEECSS
T ss_pred             ccccccccEEEEEEEC-CCHHHHHHHHHHHcCCceEEEEEecCCCCC-CCCCcEEEEEEEECCEEEEEEcCCC
Confidence            5677889999999994 799999999999999 57777777765321 11245666665       7776554

>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}

Probab=99.30  E-value=4.6e-12  Score=92.07  Aligned_cols=49  Identities=20%  Similarity=0.416  Sum_probs=38.5

Q ss_pred             eeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccc-----cc--cCcccceEE
Q 034304           12 GMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAE-----KE--LNSRLSAPH   62 (98)
Q Consensus        12 ~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~-----~~--~~~VmHA~L   62 (98)
                      +|+|||.|  .||+|||+||++|||++++.+++++|.+.+     .+  ..+|+||+|
T Consensus        26 ~i~PyL~f--~~a~eAi~FY~~vFG~~~~~~~~~~d~p~~~~~~~~~~~~g~v~hael   81 (172)
T 3l20_A           26 ALFPYIAF--ENSKEALAYYEEVFGATDVKRLEVGEEQASHFGMTKEEAQEATMHAEF   81 (172)
T ss_dssp             EEEEEEEE--SCHHHHHHHHHHHSCCEEEEEEECCTTTTTTTTCCHHHHHTCEEEEEE
T ss_pred             cEEEEEEE--CCHHHHHHHHHHHcCCEEEEEEEcccCCcccccCCcccCCCcEEEEEE
Confidence            79999999  499999999999999999999887553211     00  256777776

>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7

Probab=99.22  E-value=1.7e-11  Score=84.61  Aligned_cols=57  Identities=11%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhh-CCEEEEEEecCCcccccccCcccceEE-------EecCCCc
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAF-GAVEISRIMETKRKAEKELNSRLSAPH-------FLSLTFP   69 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AF-GAeev~~~~~pDG~i~~~~~~VmHA~L-------mlsD~~P   69 (98)
                      ++|+|||+|+ +||++|++||+++| |+++..++++++.+... ..+|+||+|       |++|..|
T Consensus         4 ~~i~p~l~~~-~d~~eA~~FY~~~f~G~~~~~~~~~~~~~~~~-~~~v~ha~l~~~~~~~m~~d~~~   68 (139)
T 1tsj_A            4 PKITTFLMFN-NQAEEAVKLYTSLFEDSEIITMAKYGENGPGD-PGTVQHSIFTLNGQVFMAIDANS   68 (139)
T ss_dssp             CSEEEEEECS-SCHHHHHHHHHHHSSSCEEEEEEECC-----C-TTSEEEEEEEETTEEEEEEC---
T ss_pred             CceeEEEEEC-CCHHHHHHHHHHHcCCCEEEEEEecCcCCCCC-CCcEEEEEEEECCEEEEEECCCC
Confidence            5799999994 89999999999999 99999888876532111 245777776       6666555

>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.98  E-value=1.4e-09  Score=74.32  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=39.2

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCccc----ccc-cCcccceEEEec
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKA----EKE-LNSRLSAPHFLS   65 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i----~~~-~~~VmHA~Lmls   65 (98)
                      ++++|||.|+ +|+++|++||+++||+++..++++++.+.    ..+ ...++|++|.++
T Consensus         3 m~~~p~L~v~-~d~~~A~~FY~~vfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~   61 (149)
T 1u6l_A            3 LQIVPYLIFN-GNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVG   61 (149)
T ss_dssp             CEEEEEEEES-SCHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEET
T ss_pred             ceEEEEEEEC-CCHHHHHHHHHHHhCCEEEEEEEcccCCcccCCCcccCCcEEEEEEEEC
Confidence            4689999993 69999999999999999988877655321    000 035677776443

>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7

Probab=98.91  E-value=4.5e-09  Score=70.20  Aligned_cols=55  Identities=20%  Similarity=0.131  Sum_probs=40.9

Q ss_pred             ceeeEEEEEecC-CHHHHHHHHHHhh-CCEEEEEEecCCcccccccCcccceEEEecCC
Q 034304           11 MGMKLQLLVEAS-KAIDAIQFYKTAF-GAVEISRIMETKRKAEKELNSRLSAPHFLSLT   67 (98)
Q Consensus        11 ~~ltPYL~v~ng-dA~eAIeFYk~AF-GAeev~~~~~pDG~i~~~~~~VmHA~LmlsD~   67 (98)
                      +.++|||.|+ + |+++|++||+++| |++....++++++... ...+++|+++.+++.
T Consensus         5 ~~i~~~L~v~-~~d~~~A~~FY~~~f~G~~~~~~~~~~~~~~~-~~~~~~~a~~~~~g~   61 (136)
T 1u7i_A            5 ARVRPFLMFQ-GVQAEAAMNFYLSLFDDAEILQIQRYGAEGPG-PEGSVLKALFRLGDQ   61 (136)
T ss_dssp             CEEEEEEEEE-SSCHHHHHHHHHHHCSSEEEEEEEECCTTCSS-CTTSEEEEEEEETTE
T ss_pred             ccceEEEEEC-CCCHHHHHHHHHHHcCCCEeeEEEEcccCCCC-CCCcEEEEEEEECCE
Confidence            4689999994 6 9999999999999 9998877666553211 124578888766543

>1xy7_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G48480, reductively methylated protein, CATH 3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.9 PDB: 2q48_A

Probab=98.86  E-value=3e-09  Score=73.92  Aligned_cols=40  Identities=40%  Similarity=0.534  Sum_probs=30.3

Q ss_pred             CCCCCCcceeeEEEEEecCC--HHHHHHHHHHhhCCEEEEEEec
Q 034304            4 PATSANFMGMKLQLLVEASK--AIDAIQFYKTAFGAVEISRIME   45 (98)
Q Consensus         4 ~~~~~g~~~ltPYL~v~ngd--A~eAIeFYk~AFGAeev~~~~~   45 (98)
                      .++++++..+.|||.|  .|  +++|++||+++||.+...+.++
T Consensus        17 ~~~~~~~~~i~~~L~v--~D~~~~~A~~FY~~vfG~~~~~~~~~   58 (166)
T 1xy7_A           17 VETHLVFTEFKQMLLV--EAQKVGDAVTFYKSAFGAIESGHSLY   58 (166)
T ss_dssp             ---CCCEEEEEEEEEE--CTTCHHHHHHHHHHHHCCEEC-----
T ss_pred             ccCCCCCceEEEEEEE--CCcCHHHHHHHHHHHhCCEEEEEEcc
Confidence            5678899999999999  56  9999999999999998876643

>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}

Probab=98.21  E-value=3.2e-06  Score=54.67  Aligned_cols=54  Identities=13%  Similarity=0.042  Sum_probs=38.4

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccccccCcccceEEEecCC
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLT   67 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~~~~~~VmHA~LmlsD~   67 (98)
                      ..+.++|.|  .|.++|++||+++||.+...+...+ |.+.+.........|++.+.
T Consensus         2 ~~~~i~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~-g~~~~~~l~~~~~~l~l~~~   55 (137)
T 3itw_A            2 SHMVVELAY--TDPDRAVDWLVRVFGFRLLLRQPAI-GTIRHADLDTGGGIVMVRRT   55 (137)
T ss_dssp             CCCEEEEEE--SCHHHHHHHHHHHHCCEEEEEESSS-SSCSEEEEECSSSEEEEEET
T ss_pred             CeEEEEEEE--CCHHHHHHHHHHccCCEEEEEecCC-CcEEEEEEecCCeEEEEEec
Confidence            457899999  7999999999999999998877544 55333333334445555443

>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0

Probab=97.49  E-value=0.00013  Score=47.44  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=28.6

Q ss_pred             CCcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304            8 ANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus         8 ~g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..+..+.|.|.|  .|.++|++||+++||.+....
T Consensus         4 ~~~~~~~~~l~v--~D~~~a~~FY~~~LG~~~~~~   36 (134)
T 3fcd_A            4 SDIHQITPFLHI--PDMQEALTLFCDTLGFELKYR   36 (134)
T ss_dssp             --CCEEEEEEEE--SCHHHHHHHHTTTTCCEEEEE
T ss_pred             hhhhcceeEEEE--CCHHHHHHHHHhccCcEEEEe
Confidence            357889999999  799999999999999998765

>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}

Probab=97.01  E-value=0.0029  Score=39.44  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .|.+  .|.++|++||+++||.+.......++
T Consensus        18 ~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~   47 (133)
T 4hc5_A           18 TIIV--SDQEKALDFYVNTLGFEKVFDNQLDP   47 (133)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEEEEET
T ss_pred             EEEE--CCHHHHHHHHHhCcCCcEeeecccCC
Confidence            5667  89999999999999999888765433

>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A

Probab=96.93  E-value=0.0029  Score=39.60  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      ..|.+  .|.+++++||+++||.+.......+++
T Consensus         6 v~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~~   37 (135)
T 1f9z_A            6 TMLRV--GDLQRSIDFYTKVLGMKLLRTSENPEY   37 (135)
T ss_dssp             EEEEC--SCHHHHHHHHHHTTCCEEEEEEEETTT
T ss_pred             EEEEe--CCHHHHHHHHHhccCcEEEEecccCCC
Confidence            45677  799999999999999998877655554

>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC, structural genomics, protein structur initiative II; 1.60A {Vibrio splendidus}

Probab=96.87  E-value=0.0019  Score=42.06  Aligned_cols=31  Identities=10%  Similarity=0.033  Sum_probs=27.7

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +.++.|.|.|  .|.++|++||+++||.+....
T Consensus         4 ~~~~~~~l~v--~Dl~~s~~FY~~~LG~~~~~~   34 (145)
T 2rk9_A            4 TLRVVPELYC--FDINVSQSFFVDVLGFEVKYE   34 (145)
T ss_dssp             CCCEEEEEEE--SSHHHHHHHHHHTTCCEEEEE
T ss_pred             cccceEEEEE--CCHHHHHHHHHhccCCEEEee
Confidence            5678999999  899999999999999987653

>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A

Probab=96.77  E-value=0.0017  Score=41.21  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=26.8

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +..+.+.|.+  .|.++|++||+++||.+....
T Consensus         4 ~~~~~~~l~v--~D~~~a~~FY~~~LG~~~~~~   34 (122)
T 1qto_A            4 FLGAVPVLTA--VDVPANVSFWVDTLGFEKDFG   34 (122)
T ss_dssp             CCCCCCEEEE--SSHHHHHHHHHHTTCCEEEEE
T ss_pred             ccceeEEEEc--CCHHHHHHHHHhccCcEEeeC
Confidence            3567789999  899999999999999987654

>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}

Probab=96.76  E-value=0.0031  Score=38.94  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      .|.+  .|-+++++||+++||.+.......+++.
T Consensus        10 ~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~~~   41 (134)
T 3l7t_A           10 ALIV--SDYDKSYEFYVNQLGFEVIRENHRPKRH   41 (134)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEEEEEEEETTTT
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEEeecCCCc
Confidence            5677  7999999999999999998877666543

>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}

Probab=96.65  E-value=0.002  Score=43.10  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ..+.+.|.|  .|.++|++||+++||.+...+...++
T Consensus         6 ~~i~i~l~v--~Dl~~a~~FY~~vLG~~~~~~~~~~~   40 (144)
T 3r6a_A            6 LQILSRLYV--ADLNPALEFYEELLETPVAMRFEIPQ   40 (144)
T ss_dssp             EEEEEEEEE--SCHHHHHHHHHHHTTCCCCEECCCSC
T ss_pred             EEEEEEEEE--CCHHHHHHHHHHhcCCEEEEEeccCC
Confidence            456789999  89999999999999998877754443

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=96.57  E-value=0.003  Score=41.85  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=24.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      --|.|  .|-++|++||+++||.+++.....+
T Consensus        30 v~I~V--~Dle~A~~FY~dvLGf~v~~d~~~~   59 (155)
T 4g6x_A           30 TNVFV--DDQAKAESFYTGKLGFLVKADVPVG   59 (155)
T ss_dssp             EEEEE--SCHHHHHHHHHHTTCCEEEEEEEET
T ss_pred             EEEEe--CCHHHHHHHHHHHhCCEEEEeecCC
Confidence            35789  8999999999999999987655443

>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A {Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*

Probab=96.53  E-value=0.005  Score=43.72  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             CCcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304            8 ANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus         8 ~g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      +....+.|+|.+  .|.++|++||+++||.+......
T Consensus       180 ~~~~~~~~~l~v--~D~~~a~~FY~~~lG~~~~~~~~  214 (301)
T 2zw5_A          180 LTTLAVITELPV--RDVAATLRLVEAALGARTAFAIG  214 (301)
T ss_dssp             CEEEEEEEEEEE--SCHHHHHHHHHHHSCCEEEEEEE
T ss_pred             cccceeEEEEEe--CCHHHHHHHHHHhcCCeEeeecC
Confidence            344677899999  89999999999999999875543

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0

Probab=96.52  E-value=0.0018  Score=39.96  Aligned_cols=30  Identities=23%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .|.+  .|.+++++||+++||.+.......++
T Consensus        10 ~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~   39 (134)
T 3rmu_A           10 AIAV--PDLEKAAAFYKNILGAQVSEAVPLPE   39 (134)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEECCCEEEGG
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEeEeeecCC
Confidence            4667  79999999999999998876554443

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=96.52  E-value=0.0092  Score=36.89  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=24.9

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .-|.+  .|.+++++||+++||.+.......++
T Consensus         7 v~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~   37 (127)
T 3e5d_A            7 VALWT--TNLEQMKQFYVTYFGATANDLYENKT   37 (127)
T ss_dssp             EEEEC--SSHHHHHHHHHHHHCCEECCCEEEGG
T ss_pred             EEEEE--CCHHHHHHHHHHhcCCeeecccccCC
Confidence            35677  89999999999999999876654443

>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A

Probab=96.47  E-value=0.0049  Score=39.12  Aligned_cols=31  Identities=13%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +..+.+.|.+  .|.+++++||+++||.+....
T Consensus         4 ~~~~~~~l~v--~D~~~a~~FY~~~lG~~~~~~   34 (124)
T 1xrk_A            4 LTSAVPVLTA--RDVAEAVEFWTDRLGFSRVFV   34 (124)
T ss_dssp             EEEEEEEEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             ccceeEEEEc--CCHHHHHHHHHHccCceEEec
Confidence            3556789999  899999999999999988754

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}

Probab=96.41  E-value=0.0044  Score=41.29  Aligned_cols=30  Identities=13%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      -|.|  .|.++|++||+++||.+...+...++
T Consensus        13 ~l~V--~Dl~~a~~FY~~~LG~~~~~~~~~~~   42 (161)
T 3oa4_A           13 GIAV--TSIKDVLPFYVGSLKLKLLGMEDLPS   42 (161)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEEEEEEEEGG
T ss_pred             EEEE--CCHHHHHHHHHHccCCeEeeeeccCC
Confidence            5677  79999999999999999887765443

>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}

Probab=96.29  E-value=0.0056  Score=37.60  Aligned_cols=29  Identities=14%  Similarity=0.140  Sum_probs=23.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      .|.+  .|.++|++||+++||.+.......+
T Consensus        10 ~l~v--~d~~~a~~FY~~~lG~~~~~~~~~~   38 (126)
T 2p25_A           10 AINA--SNYQATKNFYVEKLGFEVLRENHRP   38 (126)
T ss_dssp             EEEE--SCHHHHHHHHTTTTCCEEEEEEEEG
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEeeccCC
Confidence            5678  7999999999999999987664433

>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*

Probab=96.25  E-value=0.012  Score=39.51  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      -..|.|  .|.+++++||+++||.+...+...+++.
T Consensus        37 Hv~l~v--~D~~~a~~FY~~~LG~~~~~~~~~~~~~   70 (187)
T 3vw9_A           37 QTMLRV--KDPKKSLDFYTRVLGMTLIQKCDFPIMK   70 (187)
T ss_dssp             EEEEEC--SCHHHHHHHHHHTTCCEEEEEEEETTTT
T ss_pred             EEEEEe--CCHHHHHHHHHHhcCcEEeeccccCCCc
Confidence            356788  8999999999999999988877655543

>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}

Probab=96.21  E-value=0.01  Score=37.86  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=24.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      .-|.+  .|.++|++||+++||.+.......+
T Consensus         9 v~l~v--~Dl~~a~~FY~~~lG~~~~~~~~~~   38 (136)
T 2rk0_A            9 VSLTV--RDLDISCRWYTEILDWKELVRGRGD   38 (136)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHCCEEEEEEECS
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEeeccCC
Confidence            45677  7999999999999999987766543

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A

Probab=96.20  E-value=0.01  Score=37.63  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ..|.+  .|-++|++||+++||.+.......++
T Consensus        13 v~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~   43 (148)
T 1jc4_A           13 VAYAC--PDADEASKYYQETFGWHELHREENPE   43 (148)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHCCEEEEEEEETT
T ss_pred             EEEEe--CCHHHHHHHHHHccCceeeecccCCC
Confidence            35677  79999999999999999877654443

>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1

Probab=96.02  E-value=0.016  Score=37.37  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=26.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      ..|.+  .|.+++++||+++||.+.......+++
T Consensus        12 v~l~v--~D~~~a~~FY~~~lG~~~~~~~~~~~~   43 (144)
T 2c21_A           12 TMIRV--GDLDRSIKFYTERLGMKVLRKWDVPED   43 (144)
T ss_dssp             EEEEC--SCHHHHHHHHHHTTCCEEEEEEEEGGG
T ss_pred             EEEEe--CCHHHHHHHHHhcCCCEEEEeeecCCC
Confidence            45677  799999999999999998876654544

>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A

Probab=95.99  E-value=0.012  Score=37.24  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=25.2

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..+.+.|.+  .|.++|++||++ ||.+....
T Consensus         3 ~~~~~~l~v--~D~~~a~~FY~~-LG~~~~~~   31 (126)
T 1ecs_A            3 DQATPNLPS--RDFDSTAAFYER-LGFGIVFR   31 (126)
T ss_dssp             CEEEEEEEE--SCHHHHHHHHHT-TTCEEEEE
T ss_pred             ccEEEEEEe--CCHHHHHHHHHH-CCCEEEec
Confidence            467899999  899999999998 99988754

>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}

Probab=95.94  E-value=0.013  Score=38.16  Aligned_cols=26  Identities=4%  Similarity=0.073  Sum_probs=23.3

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      .+.|.+  .|.++|++||+++||.+...
T Consensus        24 hv~l~v--~D~~~a~~FY~~~LG~~~~~   49 (148)
T 3bt3_A           24 GPVYFT--KDMDKTVKWFEEILGWSGDI   49 (148)
T ss_dssp             CCEEEE--SCHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEE--CCHHHHHHHHHhccCCEEEe
Confidence            378999  89999999999999999864

>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2

Probab=95.94  E-value=0.0062  Score=37.86  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=24.0

Q ss_pred             Ccceee-EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304            9 NFMGMK-LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus         9 g~~~lt-PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      |++.+. ..|.+  .|.++|++||+++||.+...
T Consensus         2 ~~m~i~~v~l~v--~D~~~a~~FY~~~lG~~~~~   33 (118)
T 2i7r_A            2 NAMNLNQLDIIV--SNVPQVCADLEHILDKKADY   33 (118)
T ss_dssp             --CEEEEEEEEC--SCHHHHHHHHHHHHTSCCSE
T ss_pred             CcceeeEEEEEe--CCHHHHHHHHHHHhCCeeEE
Confidence            344554 57778  89999999999999998764

>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}

Probab=95.87  E-value=0.099  Score=33.94  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=23.3

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -.|.+  .|-+++++||+++||.+.....
T Consensus        32 v~l~v--~Dl~~a~~FY~~~LG~~~~~~~   58 (141)
T 3ghj_A           32 VAVKV--KNLEKSSQFYTEILGFEAGLLD   58 (141)
T ss_dssp             EEEEE--SCHHHHHHHHHHTSCCEEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEEec
Confidence            35788  8999999999999999887764

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}

Probab=95.53  E-value=0.012  Score=38.64  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             cceee-EEEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           10 FMGMK-LQLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        10 ~~~lt-PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      ...|. --|.|  .|.++|++||+++||.+...+...+
T Consensus        17 ~~~i~Hv~i~V--~Dle~a~~FY~~~LG~~~~~~~~~~   52 (159)
T 3gm5_A           17 MRNTVQIGIVV--RDIEESLQNYAEFFGVEKPQWFWTD   52 (159)
T ss_dssp             GGGCEEEEEEC--SCHHHHHHHHHHHTTCCCCCCEECC
T ss_pred             cccccEEEEEe--CCHHHHHHHHHHhhCCCCceEEecC
Confidence            34443 34667  8999999999999999887665444

>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*

Probab=95.50  E-value=0.029  Score=37.79  Aligned_cols=30  Identities=13%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      ..|.|  .|.+++++||+++||.+.......+
T Consensus        35 v~l~v--~Dl~~a~~FY~~~LG~~~~~~~~~~   64 (184)
T 2za0_A           35 TMLRI--KDPKKSLDFYTRVLGLTLLQKLDFP   64 (184)
T ss_dssp             EEEEC--SCHHHHHHHHHHTTCCEEEEEEEEG
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEEeccCC
Confidence            56788  8999999999999999987765433

>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*

Probab=95.29  E-value=0.024  Score=35.14  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .-|.+  .|.+++++||+++||.+....
T Consensus        14 i~l~v--~D~~~a~~FY~~~lG~~~~~~   39 (133)
T 3ey7_A           14 LVLTV--ADIPTTTNFYEKVLGMKAVSF   39 (133)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEE--CCHHHHHHHHHHccCceEEEe
Confidence            46778  899999999999999987654

>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2

Probab=95.27  E-value=0.006  Score=37.71  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=23.8

Q ss_pred             eeeEEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           12 GMKLQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        12 ~ltPYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      .+.+.|.+  .|.++|++||+++||.+...
T Consensus         8 ~i~v~l~v--~d~~~a~~FY~~~lG~~~~~   35 (119)
T 2pjs_A            8 RVVANIAT--PEPARAQAFYGDILGMPVAM   35 (119)
T ss_dssp             EEEEEEEC--SCGGGGHHHHTTTTCCCEEE
T ss_pred             EEEEEEEc--CCHHHHHHHHHHhcCCEEEe
Confidence            44577788  89999999999999998765

>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A

Probab=95.18  E-value=0.024  Score=36.71  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+....
T Consensus        28 ~l~v--~D~~~a~~FY~~vLG~~~~~~   52 (152)
T 3huh_A           28 VLTV--SDISTTIRFYEEVLGFSAVTF   52 (152)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHhcCCCEEEEc
Confidence            5677  899999999999999987765

>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family R protein, PSI-2, MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str}

Probab=95.03  E-value=0.014  Score=37.17  Aligned_cols=27  Identities=15%  Similarity=0.223  Sum_probs=23.1

Q ss_pred             eEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           14 KLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        14 tPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .+.|.+  .|.++|++||+++||.+....
T Consensus        11 ~v~l~v--~D~~~a~~FY~~~LG~~~~~~   37 (141)
T 2qnt_A           11 NPIPFV--RDINRSKSFYRDRLGLKILED   37 (141)
T ss_dssp             CCCCEE--SCHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEE--CCHHHHHHHHHHhcCCEEEEE
Confidence            367889  899999999999999987653

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=95.01  E-value=0.029  Score=35.97  Aligned_cols=25  Identities=24%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.+  .|.+++++||+++||.+...
T Consensus        12 v~l~v--~D~~~a~~FY~~~lG~~~~~   36 (141)
T 2rbb_A           12 VNIFT--RDIVAMSAFYQQVFGFQEIE   36 (141)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHCCEECG
T ss_pred             EEEEE--CCHHHHHHHHHHhcCCeeec
Confidence            56778  89999999999999998753

>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2

Probab=94.95  E-value=0.034  Score=34.00  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         7 v~l~v--~D~~~a~~FY~~~lG~~~~~~   32 (113)
T 1xqa_A            7 LNLTV--ADVVAAREFLEKYFGLTCSGT   32 (113)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHhCCCEEecc
Confidence            45778  799999999999999987653

>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8

Probab=94.90  E-value=0.039  Score=35.30  Aligned_cols=31  Identities=13%  Similarity=0.269  Sum_probs=25.2

Q ss_pred             eeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           12 GMKLQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        12 ~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      .+.-.|.|  .|-+++++||+++||.+......
T Consensus        12 ~~~i~l~v--~Dl~~s~~FY~~~LG~~~~~~~~   42 (139)
T 1twu_A           12 QIRIARPT--GQLDEIIRFYEEGLCLKRIGEFS   42 (139)
T ss_dssp             CEEEEEEC--SCHHHHHHHHTTTSCCCEEEEEE
T ss_pred             eeEEeeEe--CCHHHHHHHHHhcCCcEEEEecc
Confidence            34556678  89999999999999998876653

>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}

Probab=94.90  E-value=0.017  Score=37.69  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.++|++||+++||.+....
T Consensus         9 v~l~v--~D~~~a~~FY~~~LG~~~~~~   34 (150)
T 3bqx_A            9 ITLGI--GDLEASARFYGEGFGWAPVFR   34 (150)
T ss_dssp             EEEEE--SCHHHHHHHHHHTSCCCCSEE
T ss_pred             EEEEc--CCHHHHHHHHHHhcCCEeecC
Confidence            45778  899999999999999987654

>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A

Probab=94.80  E-value=0.025  Score=35.45  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.++|++||+++||.+....
T Consensus         8 v~l~v--~D~~~a~~FY~~~lG~~~~~~   33 (133)
T 2p7o_A            8 ITLIV--KDLNKTTAFLQNIFNAEEIYS   33 (133)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEECC-
T ss_pred             EEEEc--CCHHHHHHHHHHhcCCEEeee
Confidence            35677  799999999999999987654

>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}

Probab=94.78  E-value=0.02  Score=38.10  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.++|++||+++||.+....
T Consensus        11 ~l~v--~Dl~~a~~FY~~vLG~~~~~~   35 (148)
T 3rhe_A           11 LFYV--KNPAKSEEFYKNLLDTQPIES   35 (148)
T ss_dssp             EEEE--SCHHHHHHHHHHHHTCCCSEE
T ss_pred             EEEe--CCHHHHHHHHHHHcCCEEecc
Confidence            5677  899999999999999987654

>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2

Probab=94.76  E-value=0.038  Score=35.33  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.2

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus         8 v~l~v--~D~~~a~~FY~~~LG~~~~~~   33 (139)
T 1r9c_A            8 MTFIV--RDLERMTRILEGVFDAREVYA   33 (139)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHhhCCEEeec
Confidence            35678  799999999999999987654

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=94.72  E-value=0.075  Score=40.04  Aligned_cols=31  Identities=13%  Similarity=0.240  Sum_probs=25.6

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -|.|  .|-+++++||+++||.+.+.+...++|
T Consensus        32 ~l~V--~Dle~s~~FY~~vLGl~~~~~~~~~~~   62 (330)
T 3zi1_A           32 VFKV--GNRFQTARFYRDVLGMKVLRHEEFEEG   62 (330)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEEEEEEEEC--
T ss_pred             EEEe--CCHHHHHHHHHHhcCCeEEEEeecchh
Confidence            5778  899999999999999998887766643

>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}

Probab=94.58  E-value=0.03  Score=36.84  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      ..|.|  .|.++|++||+++||.+.....
T Consensus        29 v~l~v--~Dl~~a~~FY~~~LG~~~~~~~   55 (144)
T 2kjz_A           29 TILYV--DNPPASTQFYKALLGVDPVESS   55 (144)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHTCCCSEEE
T ss_pred             EEEEe--CCHHHHHHHHHHccCCEeccCC
Confidence            57788  8999999999999999876543

>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}

Probab=94.56  E-value=0.047  Score=36.11  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.2

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.|  .|.++|++||+++||.+...
T Consensus        29 v~l~v--~Dl~~a~~FY~~vLG~~~~~   53 (148)
T 2r6u_A           29 FEIPF--DDGDRARAFYRDAFGWAIAE   53 (148)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHccCcEEEE
Confidence            56788  89999999999999998765

>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}

Probab=94.51  E-value=0.021  Score=36.35  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -.|.|  .|-+++++||+++||.+...
T Consensus        23 v~l~v--~D~~~a~~FY~~~lG~~~~~   47 (156)
T 3kol_A           23 IALNV--QDMQASRYFYGTILGLHELT   47 (156)
T ss_dssp             EEEEE--SCHHHHHHHHTTTSCCEECC
T ss_pred             EEEEe--CCHHHHHHHHHhhcCCEEEe
Confidence            46778  89999999999999998765

>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*

Probab=94.47  E-value=0.022  Score=36.29  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|-+++++||+++||.+....
T Consensus        17 v~l~v--~D~~~s~~FY~~~lG~~~~~~   42 (132)
T 3sk2_A           17 QLVYV--SNVERSTDFYRFIFKKEPVFV   42 (132)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHTCCCSEE
T ss_pred             EEEEE--CCHHHHHHHHHHHcCCeEEEc
Confidence            46778  899999999999999987643

>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}

Probab=94.41  E-value=0.05  Score=35.41  Aligned_cols=25  Identities=20%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -.|.|  .|-+++++||+++||.+...
T Consensus        31 v~l~v--~Dl~~a~~FY~~vLG~~~~~   55 (147)
T 3zw5_A           31 IVMTV--KSIKDTTMFYSKILGMEVMT   55 (147)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEe
Confidence            46778  89999999999999998763

>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}

Probab=94.40  E-value=0.035  Score=34.98  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.|  .|-+++++||+++||.+...
T Consensus        13 v~l~v--~Dl~~a~~FY~~~LG~~~~~   37 (135)
T 3rri_A           13 LAIPA--RDLDEAYDFYVTKLGCKLAR   37 (135)
T ss_dssp             EEEEE--SCHHHHHHHHTTTTCCEEEE
T ss_pred             EEEEc--CCHHHHHHHHHHhcCCEeec
Confidence            45778  89999999999999998744

>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A

Probab=94.30  E-value=0.056  Score=34.35  Aligned_cols=25  Identities=28%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.+++++||+++||.+....
T Consensus         9 ~l~v--~D~~~a~~FY~~~lG~~~~~~   33 (135)
T 1nki_A            9 TLAV--ADLPASIAFYRDLLGFRLEAR   33 (135)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEc
Confidence            4677  799999999999999987654

>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}

Probab=94.30  E-value=0.043  Score=36.43  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      ..|.+  .|-++|++||+++||.+.....
T Consensus        12 v~l~v--~Dl~~a~~FY~~vLG~~~~~~~   38 (160)
T 3r4q_A           12 TALYA--DDLDAAEAFYRDVFGLEMVLKL   38 (160)
T ss_dssp             EEEEC--SCHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHhcCCEEEEec
Confidence            46778  8999999999999999887653

>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2

Probab=94.20  E-value=0.05  Score=34.86  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+  .|.+++++||+++||.+....
T Consensus         9 ~l~v--~D~~~a~~FY~~~LG~~~~~~   33 (141)
T 1npb_A            9 TLAV--SDLQKSVTFWHELLGLTLHAR   33 (141)
T ss_dssp             EEEE--SCHHHHHHHHHTTSCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHhccCCEEEee
Confidence            4677  799999999999999987655

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A

Probab=94.00  E-value=0.061  Score=33.67  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .|-++|++||+ +||.+....
T Consensus        12 ~i~v--~Dl~~a~~FY~-~lG~~~~~~   35 (133)
T 3hdp_A           12 GYAV--KNIDSALKKFK-RLGYVEESE   35 (133)
T ss_dssp             EEEC--SCHHHHHHHHH-HTTCEECSC
T ss_pred             EEEE--CCHHHHHHHHH-HcCCeeecc
Confidence            4667  79999999999 999987654

>1ss4_A Glyoxalase family protein; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; HET: CIT GSH; 1.84A {Bacillus cereus} SCOP: d.32.1.6

Probab=93.30  E-value=0.11  Score=32.98  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=24.7

Q ss_pred             Ccceee-EEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304            9 NFMGMK-LQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus         9 g~~~lt-PYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      ....+. .-|.|  .|.++|++||++ ||.+......
T Consensus         8 ~~~~i~hv~l~v--~D~~~a~~FY~~-lG~~~~~~~~   41 (153)
T 1ss4_A            8 KLLRMDNVSIVV--ESLDNAISFFEE-IGLNLEGRAN   41 (153)
T ss_dssp             CEEEEEEEEEEC--SCHHHHHHHHHH-HTCEEEEEEE
T ss_pred             cccceeeEEEEe--CCHHHHHHHHHH-CCCEEEeecc
Confidence            334443 35667  899999999999 9998876543

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=93.20  E-value=0.067  Score=34.40  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.++|++||++ ||.+....
T Consensus        11 ~l~v--~D~~~a~~FY~~-LG~~~~~~   34 (128)
T 3g12_A           11 TINT--SHLQGMLGFYRI-IGFQFTAS   34 (128)
T ss_dssp             EEEE--SCHHHHHHHHHH-HTCCCEEC
T ss_pred             EEEc--CCHHHHHHHHHH-CCCEEecc
Confidence            5667  899999999999 99987554

>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*

Probab=92.74  E-value=0.072  Score=33.96  Aligned_cols=24  Identities=17%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      ..|.|  .|.++|++||++ ||.+...
T Consensus         8 v~l~v--~D~~~a~~FY~~-LG~~~~~   31 (138)
T 2a4x_A            8 FAVVV--EDMAKSLEFYRK-LGVEIPA   31 (138)
T ss_dssp             EEEEE--SCHHHHHHHHHT-TTCCCCG
T ss_pred             EEEEE--CCHHHHHHHHHH-cCCcEEe
Confidence            67888  899999999998 9987653

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=92.49  E-value=0.33  Score=35.50  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=21.5

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      --|.+  .|.++|++||+++||.+....
T Consensus        36 v~l~v--~D~~~a~~FY~~vlG~~~~~~   61 (282)
T 3oxh_A           36 VDLQT--TDQSAAKKFYTSLFGWGYDDN   61 (282)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEec--CCHHHHHHHHHHhcCcEEeec
Confidence            35677  899999999999999986544

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=92.36  E-value=0.21  Score=36.06  Aligned_cols=27  Identities=4%  Similarity=0.161  Sum_probs=23.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.+  .|.+++++||+++||.+......
T Consensus       155 ~l~v--~D~~~a~~FY~~~LG~~~~~~~~  181 (307)
T 1mpy_A          155 LMYG--DELPATYDLFTKVLGFYLAEQVL  181 (307)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEc--CCHHHHHHHHHHHcCCeeEeeee
Confidence            5677  79999999999999998876543

>3zi1_A Glyoxalase domain-containing protein 4; isomerase; 1.90A {Homo sapiens}

Probab=92.02  E-value=0.18  Score=37.92  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      ..|.+  .|.+++++||+++||.+.+....
T Consensus       163 v~L~v--~Dl~~a~~FY~~vLG~~~~~~~~  190 (330)
T 3zi1_A          163 VTLAV--SDLQKSLNYWCNLLGMKIYENDE  190 (330)
T ss_dssp             EEEEE--SCHHHHHHHHHHTTCCEEEEEET
T ss_pred             EEEEC--CCHHHHHHHHHHhcCCEEEeecc
Confidence            45677  89999999999999999877653

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=91.77  E-value=0.17  Score=36.25  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.+  .|-+++++||+++||.+.....
T Consensus       147 ~l~v--~D~~~a~~FY~~~lG~~~~~~~  172 (292)
T 1kw3_B          147 VRCV--PDTAKAMAFYTEVLGFVLSDII  172 (292)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEec--CCHHHHHHHHHhccCCEEeeee
Confidence            4677  7999999999999999877554

>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}

Probab=91.67  E-value=0.23  Score=32.40  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=23.0

Q ss_pred             EEEEEecCCHHHHHHHH---HHhhCCEEEEEE
Q 034304           15 LQLLVEASKAIDAIQFY---KTAFGAVEISRI   43 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFY---k~AFGAeev~~~   43 (98)
                      .-|.+  .|.+++++||   +++||.+.....
T Consensus        24 v~l~v--~Dl~~a~~FY~~~~~~LG~~~~~~~   53 (146)
T 3ct8_A           24 VEINV--DHLEESIAFWDWLLGELGYEDYQSW   53 (146)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHhhhhhCCCEEEEec
Confidence            46788  7999999999   999999876653

>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}

Probab=91.63  E-value=0.094  Score=32.69  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHhhCCEEEEE
Q 034304           22 SKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.+++++||+++||.+....
T Consensus        21 ~D~~~a~~FY~~~lG~~~~~~   41 (126)
T 2qqz_A           21 GCEEEARAFYGETIGMEEIPK   41 (126)
T ss_dssp             TTHHHHHHHHTTTTCCEEECC
T ss_pred             ccHHHHHHHHHhcCCCEEecC
Confidence            599999999999999987654

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=91.40  E-value=0.18  Score=37.39  Aligned_cols=27  Identities=19%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      --|.|  .|.++|++||+++||.+.....
T Consensus        34 v~l~v--~Dl~~a~~FY~~~LG~~~~~~~   60 (338)
T 1zsw_A           34 ISMVT--KNANENNHFYKNVLGLRRVKMT   60 (338)
T ss_dssp             EEEEE--SCHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEEEc--CCHHHHHHHHHHhcCCEEEEee
Confidence            35677  8999999999999999987654

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=91.15  E-value=0.31  Score=35.40  Aligned_cols=29  Identities=10%  Similarity=0.276  Sum_probs=24.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.+  .|-+++++||+++||.+.......+
T Consensus       156 ~l~v--~D~~~~~~FY~~~LG~~~~~~~~~~  184 (309)
T 3hpy_A          156 LLYG--PNIAEVQKIFTEVLGFYLVERVLSP  184 (309)
T ss_dssp             EEEE--SCHHHHHHHHHHTSCCEEEEEEECS
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEEEecC
Confidence            4677  7999999999999999887766544

>3hpy_A Catechol 2,3-dioxygenase; repeated motifs, aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.94A {Pseudomonas SP} PDB: 3hpv_A 3hq0_A*

Probab=91.05  E-value=0.23  Score=36.06  Aligned_cols=26  Identities=35%  Similarity=0.574  Sum_probs=22.3

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      --|.+  .|.+++++||+++||.+.+..
T Consensus        12 v~l~v--~Dl~~a~~FY~~vLG~~~~~~   37 (309)
T 3hpy_A           12 AQVRV--LNLEEGIHFYRNVLGLVETGR   37 (309)
T ss_dssp             EEEEE--SSHHHHHHHHHHTSCCEEEEE
T ss_pred             EEEEc--CCHHHHHHHHHhccCCEEEEE
Confidence            35677  899999999999999987765

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=90.96  E-value=0.23  Score=35.72  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=22.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.+  .|-+++++||+++||.+......
T Consensus       147 ~l~v--~D~~~a~~FY~~~LG~~~~~~~~  173 (300)
T 2zyq_A          147 VLST--RDDAEALHFYRDVLGFRLRDSMR  173 (300)
T ss_dssp             EEEC--SCHHHHHHHHHTTTCCEEEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEeeeec
Confidence            4677  79999999999999999876543

>1kw3_B 2,3-dihydroxybiphenyl dioxygenase; four TIME repetitions of the beta-alpha-beta-BETA-beta motif oxidoreductase; 1.45A {Pseudomonas SP} SCOP: d.32.1.3 d.32.1.3 PDB: 1dhy_A 1eiq_A 1eir_A* 1eil_A 1kw6_B* 1kw8_B* 1kw9_B* 1kwb_B 1kwc_B*

Probab=90.68  E-value=0.28  Score=35.11  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=21.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+.+..
T Consensus         9 ~l~v--~Dl~~a~~FY~~~lG~~~~~~   33 (292)
T 1kw3_B            9 GFAV--KDVPAWDHFLTKSVGLMAAGS   33 (292)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHhcCCCEEeec
Confidence            4677  899999999999999987654

>1mpy_A Catechol 2,3-dioxygenase; extradiol dioxygenase, non heme iron dioxygenase, metapyrocatechase, oxidoreductase; 2.80A {Pseudomonas putida} SCOP: d.32.1.3 d.32.1.3

Probab=90.51  E-value=0.29  Score=35.27  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=22.5

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      --|.+  .|.+++++||+++||.+....
T Consensus        11 v~l~v--~Dl~~a~~FY~~~lG~~~~~~   36 (307)
T 1mpy_A           11 VQLRV--LDMSKALEHYVELLGLIEMDR   36 (307)
T ss_dssp             EEEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHHccCCEEEee
Confidence            45778  899999999999999988764

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=90.51  E-value=0.31  Score=36.46  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.+  .|-+++++||+++||.+......
T Consensus       158 ~l~v--~D~~~a~~FY~~vLG~~~~~~~~  184 (339)
T 3lm4_A          158 NLMS--SDVTAVKDSFERHLGFRTTERVV  184 (339)
T ss_dssp             EEEE--SCHHHHHHHHHHHHCCEEEEEEE
T ss_pred             EEEc--CCHHHHHHHHHHhCCCeEEEEEe
Confidence            4667  89999999999999999877765

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=90.42  E-value=0.77  Score=34.83  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=24.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.|  .|.+++++||+++||.+.+.+....
T Consensus        13 ~l~v--~Dl~~s~~FY~~vLGl~~v~~~~~~   41 (335)
T 3oaj_A           13 TAIV--GHPQENTDFYAGVLGLRLVKQTVNF   41 (335)
T ss_dssp             EEEE--SCHHHHHHHHTTTTCCEEEEEEECS
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEeeecCC
Confidence            3567  8999999999999999988775433

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=90.32  E-value=0.31  Score=36.61  Aligned_cols=30  Identities=7%  Similarity=-0.021  Sum_probs=23.9

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      +.|  +|.+++++||.++||.+.+.+...++|
T Consensus        11 ~~v--~D~~~a~~fy~~~LGf~~~~~~~~~~g   40 (357)
T 2r5v_A           11 MYV--ENLEVAAFSWVDKYAFAVAGTSRSADH   40 (357)
T ss_dssp             EEC--SCHHHHHHHHHHHHCCEEEEEEEETTE
T ss_pred             EEE--CCHHHHHHHHHHcCCCeEEEEEcCCCc
Confidence            456  899999999999999998776543333

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=89.84  E-value=0.36  Score=34.61  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+.+..
T Consensus         9 ~l~v--~Dl~~s~~FY~~~LG~~~~~~   33 (297)
T 1lgt_A            9 GFAV--SDVAAWRSFLTQKLGLMEAGT   33 (297)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEc--CCHHHHHHHHHHccCCEEeec
Confidence            4667  799999999999999988764

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=89.81  E-value=0.48  Score=34.96  Aligned_cols=30  Identities=7%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -|.+  .|-+++++|| ++||.+.......++|
T Consensus       157 ~l~v--~D~~~a~~FY-~~LGf~~~~~~~~~~g  186 (323)
T 1f1u_A          157 NQVT--PDVPRGRAYL-EDLGFRVSEDIKDSDG  186 (323)
T ss_dssp             EEEE--SCHHHHHHHH-HHTTCEEEEEEECTTC
T ss_pred             EEec--CCHHHHHHHH-HhCCCeEEEEEEcCCC
Confidence            4667  7999999999 9999988776655544

>1lgt_A Biphenyl-2,3-DIOL 1,2-dioxygenase; extradiol dioxygenase, 2,3-dihydroxybiphenyl, non-heme iron, anaerobic, PCB biodegradation; HET: BP3; 1.70A {Burkholderia xenovorans} SCOP: d.32.1.3 d.32.1.3 PDB: 1kmy_A* 1knd_A 1knf_A 1han_A* 1lkd_A*

Probab=89.76  E-value=0.37  Score=34.57  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=22.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.+  .|-+++++||+++||.+.....
T Consensus       147 ~l~v--~D~~~a~~FY~~~lG~~~~~~~  172 (297)
T 1lgt_A          147 VRCV--PDSDKALAFYTDVLGFQLSDVI  172 (297)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEec--CCHHHHHHHHHHhcCCeeeeEE
Confidence            4677  7999999999999999887653

>3oxh_A RV0577 protein; kinase regulation, antibiotic resistance, mycobacterium tube structural genomics, PSI, protein structure initiative; HET: PMB XYL; 1.75A {Mycobacterium tuberculosis}

Probab=89.57  E-value=0.29  Score=35.81  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .-|.+  .|.++|++||+++||.+....
T Consensus       168 ~~l~v--~D~~~a~~FY~~vlG~~~~~~  193 (282)
T 3oxh_A          168 NELLT--DKPDLALAFYEAVVGLTHSSM  193 (282)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHCCEEEEC
T ss_pred             EEEEc--CCHHHHHHHHHHHhCCeeeec
Confidence            45667  899999999999999986643

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=89.38  E-value=0.28  Score=35.62  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=21.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+.+..
T Consensus        14 ~l~v--~Dl~~a~~FY~~~LG~~~~~~   38 (302)
T 2ehz_A           14 GISV--KDPDAWKSFATDMLGLQVLDE   38 (302)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEECC
T ss_pred             EEEe--CCHHHHHHHHHhcCCCEEEec
Confidence            4667  799999999999999987643

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=89.19  E-value=0.45  Score=34.99  Aligned_cols=26  Identities=15%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.+  .|-+++++||+++||.+...+.
T Consensus       146 ~l~v--~D~~~a~~FY~~~LG~~~~~~~  171 (310)
T 3b59_A          146 VLHS--PNHQDMVKFFTDVLGFKVSDWL  171 (310)
T ss_dssp             EEEE--TTHHHHHHHHHHTSCCEEEEEE
T ss_pred             EEec--CCHHHHHHHHHhCCCCEEEEee
Confidence            4677  8999999999999999887654

>2zyq_A Probable biphenyl-2,3-DIOL 1,2-dioxygenase BPHC; extradiol, DHSA, TB, catechol, cholesterol, steroid, aromatic hydrocarbons catabolism; HET: TAR; 2.00A {Mycobacterium tuberculosis} PDB: 2zi8_A*

Probab=89.14  E-value=0.3  Score=35.10  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      --|.|  .|.+++++||+++||.+.+.
T Consensus         9 v~l~v--~Dl~~a~~FY~~~lG~~~~~   33 (300)
T 2zyq_A            9 LRIEA--TDMAAWREYGLKVLGMVEGK   33 (300)
T ss_dssp             EEEEE--SCHHHHHHHHHHTSCCEECS
T ss_pred             EEEEe--CCHHHHHHHHHHccCCEEec
Confidence            35678  79999999999999998754

>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein from glyoxalase family, structural GENO PSI, protein structure initiative; 1.65A {Bacillus cereus} SCOP: d.32.1.10 d.32.1.10

Probab=88.89  E-value=0.45  Score=35.24  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|-+++++||+++||.+....
T Consensus       185 ~l~v--~Dl~~a~~FY~~~LG~~~~~~  209 (338)
T 1zsw_A          185 ELTV--RRLDKMASTLTEIFGYTEVSR  209 (338)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEE--CCHHHHHHHHHHhcCCEEEee
Confidence            5677  899999999999999987654

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*

Probab=88.84  E-value=0.5  Score=37.63  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -+.|  +|+++|++||.++||.+.+.....++|
T Consensus        16 ~i~V--~d~~~a~~fY~~~LGf~~v~~~~~e~g   46 (393)
T 3isq_A           16 TFWV--GNAKQAASFYCSKMGFEPLAYRGLETG   46 (393)
T ss_dssp             EEEC--SCHHHHHHHHHHHHCCEEEEEESGGGT
T ss_pred             EEEE--CCHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            4567  899999999999999998877544434

>3b59_A Glyoxalase/bleomycin resistance protein/dioxygena; 11004Z, NYSGXRC, PSI-2, structural genomics, Pro structure initiative; 2.53A {Novosphingobium aromaticivorans}

Probab=88.14  E-value=0.53  Score=34.59  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=21.9

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..|.+  .|.+++++||+++||.+....
T Consensus        12 v~l~v--~Dl~~a~~FY~~vlG~~~~~~   37 (310)
T 3b59_A           12 VGYGV--KDFDAEKAFYADVWGLEPVGE   37 (310)
T ss_dssp             EEEEE--SSHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEec--CCHHHHHHHHHhCcCCEEeee
Confidence            45677  899999999999999987653

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3

Probab=87.89  E-value=0.44  Score=36.66  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -+.|  +|+++|++||+++||.+.+.+.
T Consensus        27 ~i~V--~D~~~a~~FY~~~LGf~~~~~~   52 (381)
T 1t47_A           27 VFAV--GNAKQAAHYYSTAFGMQLVAYS   52 (381)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEEEEEE
T ss_pred             EEEE--CCHHHHHHHHHHcCCCEEEEEE
Confidence            4567  8999999999999999988764

>4ghg_A Homoprotocatechuate 2,3-dioxygenase; oxygen activation, Fe(II), 2-His-1-carboxylate triad, 4-nitrocatechol, OXY complex, oxidoreductase; HET: P6G PG4 DHY; 1.50A {Brevibacterium fuscum} PDB: 1q0o_A 1q0c_A 2iga_A* 2ig9_A 3ojj_A* 3bza_A* 3ojk_A* 3ojt_A* 3ojn_A* 4ghh_A* 4ghc_A 4ghd_A* 4ghe_A* 4ghf_A* 3eck_A* 3ecj_A*

Probab=87.88  E-value=0.98  Score=34.87  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      --|.|  .|-+++++||+++||-+++.+
T Consensus        21 V~l~V--~DLe~s~~FY~dvLGL~~~~~   46 (365)
T 4ghg_A           21 AELVV--TDLAKSRNFYVDVLGLHVSYE   46 (365)
T ss_dssp             EEEEE--SCHHHHHHHHTTTTCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHhhCCCCEEEEE
Confidence            35777  899999999999999987765

>3lm4_A Catechol 2,3-dioxygenase; NYSGXRC, PSI-II, protein structure initiative, 2hydroxyl 6 OXO 6 phenyl hexa 2-4 dienoic acid, peroxide; HET: HPX; 1.80A {Rhodococcus jostii}

Probab=87.79  E-value=0.56  Score=35.07  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|-+++++||+++||.++...
T Consensus        16 ~l~v--~Dl~~a~~FY~~vLG~~~~~~   40 (339)
T 3lm4_A           16 ELFS--PKPQETLDFFTKFLGMYVTHR   40 (339)
T ss_dssp             EEEE--SSHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHhcCCCEEEEe
Confidence            4667  899999999999999988765

>1f1u_A Homoprotocatechuate 2,3-dioxygenase; extradiol, manganese, biodegradation, aromatic, oxidoreductase; 1.50A {Arthrobacter globiformis} SCOP: d.32.1.3 d.32.1.3 PDB: 1f1r_A 1f1v_A* 1f1x_A

Probab=87.49  E-value=0.44  Score=35.15  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -.|.+  .|.++|++||+++||.+....
T Consensus        21 v~l~v--~Dl~~a~~FY~~vlG~~~~~~   46 (323)
T 1f1u_A           21 MEIVV--TDLAKSREFYVDVLGLHVTEE   46 (323)
T ss_dssp             EEEEE--SCHHHHHHHHTTTTCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHhCCCCEEeee
Confidence            35667  899999999999999987654

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=87.19  E-value=0.49  Score=37.59  Aligned_cols=28  Identities=7%  Similarity=0.118  Sum_probs=23.6

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      --|.|  +|.++|++||+++||.+.+....
T Consensus        29 V~i~V--~Dle~a~~FY~~~LGf~~v~~~~   56 (424)
T 1sqd_A           29 IEFWC--GDATNVARRFSWGLGMRFSAKSD   56 (424)
T ss_dssp             EEEEC--SCHHHHHHHHHHHHTCEEEEEES
T ss_pred             EEEEE--CCHHHHHHHHHHcCCCEEEEEEc
Confidence            35667  89999999999999999877653

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=86.54  E-value=0.37  Score=34.89  Aligned_cols=24  Identities=17%  Similarity=0.075  Sum_probs=20.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEIS   41 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~   41 (98)
                      -|.+  .|.+++++||+++||.+...
T Consensus        11 ~l~v--~Dl~~a~~FY~~~LG~~~~~   34 (305)
T 2wl9_A           11 GLSV--SNLDAWRDYAAGIMGMQVVD   34 (305)
T ss_dssp             EEEC--SCHHHHHHHHTTTTCCEEEC
T ss_pred             EEEe--CCHHHHHHHHHhccCCEEee
Confidence            4667  79999999999999998764

>2ehz_A 1,2-dihydroxynaphthalene dioxygenase; extradiol dioxygenase, protein substrate complex, oxidoreduc; 1.35A {Pseudomonas SP} PDB: 2ei0_A* 2ei1_A* 2ei3_A* 2ei2_A

Probab=86.44  E-value=0.35  Score=35.08  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.++|++|| ++||.+....
T Consensus       154 ~l~v--~D~~~a~~FY-~~lG~~~~~~  177 (302)
T 2ehz_A          154 IVRQ--TDVAEAHKFY-SLLGFRGDVE  177 (302)
T ss_dssp             EECC--SCHHHHHHHH-HHTTCBCCEE
T ss_pred             EEEc--CCHHHHHHHH-HhcCCeeeeE
Confidence            4566  7999999999 9999987644

>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}

Probab=86.35  E-value=0.52  Score=30.32  Aligned_cols=20  Identities=20%  Similarity=0.154  Sum_probs=16.7

Q ss_pred             EEEEEecCCHHHHHHHHHHhhC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFG   36 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFG   36 (98)
                      --|.|  .|-+++++||+++++
T Consensus        13 V~L~V--~Dl~~s~~FY~~lg~   32 (149)
T 4gym_A           13 VNLPV--ADVAASQAFFGTLGF   32 (149)
T ss_dssp             EEEEE--SCHHHHHHHHHHTTC
T ss_pred             EEEEe--CCHHHHHHHHHHhCC
Confidence            34789  899999999988655

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A

Probab=86.30  E-value=0.66  Score=36.84  Aligned_cols=29  Identities=10%  Similarity=0.023  Sum_probs=22.6

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ++|  .|-+++++||+++||.++......+|
T Consensus       208 i~V--~dl~~a~~FY~~~LGf~~~~~~~~~d  236 (424)
T 1sqd_A          208 GNV--PELGPALTYVAGFTGFHQFAEFTADD  236 (424)
T ss_dssp             EEC--SCHHHHHHHHHHHHCCEEEEEEC---
T ss_pred             Eee--CCHHHHHHHHHHhhCCeEEEEEcccc
Confidence            455  79999999999999999887765444

>3pkv_A Toxoflavin lyase (TFLA); metalloenzyme, vicinal oxygen chelate superfamily; 1.34A {Paenibacillus polymyxa} PDB: 3pkw_A 3pkx_A* 3oul_A 3oum_A*

Probab=86.14  E-value=0.47  Score=34.99  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=21.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+.+..
T Consensus        31 ~L~V--~Dle~s~~FY~~vLGl~~~~~   55 (252)
T 3pkv_A           31 TLYT--AELDRMLAFYTNMLGAQHVHE   55 (252)
T ss_dssp             EEEE--SCHHHHHHHHHHHHCGGGEEE
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEc
Confidence            5667  899999999999999987654

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=85.98  E-value=0.79  Score=36.32  Aligned_cols=29  Identities=14%  Similarity=0.112  Sum_probs=23.0

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ++|  .|-+++++||+++||.+.......+|
T Consensus       205 i~V--~dl~~a~~FY~~vLGf~~~~~~~~~d  233 (418)
T 1sp8_A          205 GNV--PELAPAAAYFAGFTGFHEFAEFTTED  233 (418)
T ss_dssp             EEC--SCHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             Eec--CCHHHHHHHHHHHcCCEEEEEecccc
Confidence            455  79999999999999999887765444

>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}

Probab=85.95  E-value=0.75  Score=35.30  Aligned_cols=31  Identities=13%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ....+|.|.|  .|=+.-|+||++++|-+.+..
T Consensus         9 ~~~~~p~LrV--~nr~~~~~FY~~vlG~kll~e   39 (244)
T 3e0r_A            9 IVRIIPTLKA--NNRKLNETFYIETLGMKALLE   39 (244)
T ss_dssp             EEEEEEEEEE--SSHHHHHHHHTTTTCCEEEEE
T ss_pred             eEEEeeEEEE--CCHHHHHHHHHhccCcEEeec
Confidence            4567899999  799999999999999876543

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}

Probab=83.84  E-value=1  Score=33.72  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             EEEEecC--CHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEAS--KAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ng--dA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .  |-+++++||+++||.+....
T Consensus       163 ~l~V--~~~D~~~~~~FY~~vLGf~~~~~  189 (357)
T 2r5v_A          163 AICL--NAGDLGPTVEYYERALGFRQIFD  189 (357)
T ss_dssp             EEEC--CTTCHHHHHHHHHHHHCCEEEEE
T ss_pred             EEEE--chhhHHHHHHHHHHhcCCcEEEE
Confidence            3556  6  99999999999999988754

>2wl9_A Catechol 2,3-dioxygenase; aromatic hydrocarbons catabolism, iron, oxidoreductase; 1.90A {Rhodococcus SP} PDB: 2wl3_A

Probab=81.60  E-value=0.93  Score=32.74  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|-+++++|| ++||.+....
T Consensus       151 ~l~v--~D~~~s~~FY-~vLG~~~~~~  174 (305)
T 2wl9_A          151 IIRE--DDVEEATRFY-RLLGLEGAVE  174 (305)
T ss_dssp             EECC--SCHHHHHHHH-HHHTCEEEEC
T ss_pred             EEEC--CCHHHHHHHH-HHcCCeeeee
Confidence            4567  7999999999 9999987543

>3oaj_A Putative ring-cleaving dioxygenase MHQO; structural genomics, protein structure initiative, PSI-biolo unknown function; 1.40A {Bacillus subtilis subsp}

Probab=80.59  E-value=1.4  Score=33.30  Aligned_cols=25  Identities=12%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .|.+++++||+++||.+.+..
T Consensus       158 ~L~v--~Dle~t~~FY~~vLG~~~~~~  182 (335)
T 3oaj_A          158 TLLS--EQPDKTADLLENIMGLERVGK  182 (335)
T ss_dssp             EEEC--SSHHHHHHHHHHTSCCEEEEE
T ss_pred             EEEE--CCHHHHHHHHHHHhCCEEeec
Confidence            4677  899999999999999988764

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3

Probab=80.54  E-value=1.2  Score=35.31  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      -|.|  +|.++|++||.++||.+.+.+.
T Consensus        36 ~i~V--~Dle~a~~fY~~~LGf~~~~~~   61 (418)
T 1sp8_A           36 ELWC--ADAASAAGRFSFGLGAPLAARS   61 (418)
T ss_dssp             EEEC--SCHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHhCCCEEEEEE
Confidence            4567  8999999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1xy7a_	135	d.32.1.9 (A:) Hypothetical protein At5g48480 {Thal	5e-05
d1u7ia_	134	d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudom	6e-04
d1tsja_	129	d.32.1.7 (A:) Hypothetical protein MW1090 {Staphyl	0.004

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.2 bits (85), Expect = 5e-05
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSA 60
           LLVEA K  DA+ FYK+AFGA+E    +  KRK ++EL   LS+
Sbjct: 10 MLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSS 54

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.3 bits (78), Expect = 6e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 11 MGMKLQ--LLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFL 64
          M  +++  L+ +  +A  A+ FY + F   EI +I     +      S L A   L
Sbjct: 2  MSARVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRL 57

>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein MW1090
species: Staphylococcus aureus [TaxId: 1280]

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 24 AIDAIQFYKTAFGAVEISRIM 44
          A +A++ Y + F   EI  + 
Sbjct: 16 AEEAVKLYTSLFEDSEIITMA 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1tsja_	129	Hypothetical protein MW1090 {Staphylococcus aureus	99.56
d1u6la_	137	Hypothetical protein PA1353 {Pseudomonas aeruginos	99.56
d1u7ia_	134	Hypothetical protein PA1358 {Pseudomonas aeruginos	99.48
d1xy7a_	135	Hypothetical protein At5g48480 {Thale cress (Arabi	99.43
d1u69a_	156	Hypothetical protein PA2721 {Pseudomonas aeruginos	99.35
d1xrka_	120	Bleomycin resistance protein, BRP {Streptoalloteic	97.59
d1jifa_	122	Bleomycin resistance protein, BRP {Streptomyces ve	97.3
d1t47a1	163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	97.06
d2pjsa1	111	Uncharacterized protein Atu1953 {Agrobacterium tum	97.0
d2c21a1	139	Glyoxalase I (lactoylglutathione lyase) {Leishmani	96.89
d1f9za_	135	Glyoxalase I (lactoylglutathione lyase) {Escherich	96.65
d1sqia1	149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	96.65
d1jc4a_	145	Methylmalonyl-CoA epimerase {Propionibacterium she	96.62
d1qipa_	176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	96.46
d1sqda1	167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	96.36
d1r9ca_	130	Fosfomycin resistance protein FosX {Mesorhizobium	96.05
d1sp8a1	172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	95.92
d2i7ra1	115	Hypotheical protein SP0731 {Streptococcus pneumoni	95.88
d1zswa1	144	Hypothetical protein BC1024 {Bacillus cereus [TaxI	95.85
d1xqaa_	113	Hypothetical protein BC3580 {Bacillus cereus [TaxI	95.56
d1mpya2	162	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	95.5
d1ecsa_	120	Bleomycin resistance protein, BRP {Klebsiella pneu	95.29
d1mpya1	145	Catechol 2,3-dioxygenase (metapyrocatechase) {Pseu	94.96
d1npba_	140	Fosfomycin resistance protein A (FosA) {Serratia m	94.81
d1nkia_	134	Fosfomycin resistance protein A (FosA) {Pseudomona	94.8
d1twua_	137	Hypothetical protein YycE {Bacillus subtilis [TaxI	94.52
d1ss4a_	149	Hypothetical protein BC1747 {Bacillus cereus (stra	94.46
d1lgta1	131	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	93.88
d1kw3b2	156	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	93.69
d1f1ua1	146	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	93.56
d1f1ua2	176	Homoprotocatechuate 2,3-dioxygenase {Arthrobacter	93.23
d1kw3b1	132	2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzy	92.57
d1zswa2	170	Hypothetical protein BC1024 {Bacillus cereus [TaxI	92.47
d1sp8a2	224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	91.41
d1cjxa2	203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	90.26
d1klla_	128	Mitomycin resistance protein D, MRD {Streptomyces	86.66
d1sqia2	210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	86.11
d1u6ma_	189	Putative acetyltransferase EF0945 {Enterococcus fa	83.19
d1t47a2	199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	80.89

>d1tsja_ d.32.1.7 (A:) Hypothetical protein MW1090 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein MW1090
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=2e-15  Score=102.18  Aligned_cols=59  Identities=12%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE-EecCCcccccccCcccceEE-------EecCCCch
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR-IMETKRKAEKELNSRLSAPH-------FLSLTFPM   70 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~-~~~pDG~i~~~~~~VmHA~L-------mlsD~~P~   70 (98)
                      +.+|+|||+|| |||+|||+||++|||++++.+ +++++.+ .....+|+||+|       |++|..|.
T Consensus         3 m~~i~Pyl~f~-g~a~eAi~FY~~vFg~~~v~~~~~~~~~~-~~~~g~i~ha~l~i~g~~~~~~d~~~~   69 (129)
T d1tsja_           3 IPKITTFLMFN-NQAEEAVKLYTSLFEDSEIITMAKYGENG-PGDPGTVQHSIFTLNGQVFMAIDANSG   69 (129)
T ss_dssp             CCSEEEEEECS-SCHHHHHHHHHHHSSSCEEEEEEECC------CTTSEEEEEEEETTEEEEEEC----
T ss_pred             CCcEEEEEEEC-CCHHHHHHHHHHHcCCcEEEEEEecCCCC-CCCCCcEEEEEEEECCEEEEeecCCCC
Confidence            35799999994 999999999999998766555 4444322 122356777776       67776663

>d1u6la_ d.32.1.7 (A:) Hypothetical protein PA1353 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1353
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=3.3e-15  Score=99.33  Aligned_cols=56  Identities=9%  Similarity=0.051  Sum_probs=45.1

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccc-----cccCcccceEEEecCC
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAE-----KELNSRLSAPHFLSLT   67 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~-----~~~~~VmHA~LmlsD~   67 (98)
                      +.|+|||+|| |||+|||+||+++||++++.+++++|++..     ....+|+||+|.+.+.
T Consensus         2 ~~i~pyl~f~-g~a~eAl~FY~~~fG~e~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~   62 (137)
T d1u6la_           2 LQIVPYLIFN-GNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSF   62 (137)
T ss_dssp             CEEEEEEEES-SCHHHHHHHHHHHHCSEEEEEEESTTTTC----CCSSCCCEEEEEEEETTE
T ss_pred             ceEEEEEEEC-CCHHHHHHHHHHHCCCEEEEEEEcccCCccccCCCCCCCeEEEEEEEEcCe
Confidence            6899999994 999999999999999999999987765322     1125899999866654

>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA1358
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=3.4e-14  Score=95.95  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             ceeeEEEEEecC-CHHHHHHHHHHhhCCEEEEEEe-cCCcccccccCcccceEEE
Q 034304           11 MGMKLQLLVEAS-KAIDAIQFYKTAFGAVEISRIM-ETKRKAEKELNSRLSAPHF   63 (98)
Q Consensus        11 ~~ltPYL~v~ng-dA~eAIeFYk~AFGAeev~~~~-~pDG~i~~~~~~VmHA~Lm   63 (98)
                      .+|+|||+|| + ||+|||+||++|||++++.+++ +++.. ..+..+|+||+|.
T Consensus         4 ~~l~PyL~f~-g~~a~eAi~FY~~~Fg~~~v~~~~~~~~~~-~~~~g~v~ha~l~   56 (134)
T d1u7ia_           4 ARVRPFLMFQ-GVQAEAAMNFYLSLFDDAEILQIQRYGAEG-PGPEGSVLKALFR   56 (134)
T ss_dssp             CEEEEEEEEE-SSCHHHHHHHHHHHCSSEEEEEEEECCTTC-SSCTTSEEEEEEE
T ss_pred             CcEEEEEEEC-CcCHHHHHHHHHHhCCCeEEEEEEEcCCCC-CCCCCCEEEEEEE
Confidence            4699999996 6 8999999999999998766644 44321 1223467777663

>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein At5g48480
domain: Hypothetical protein At5g48480
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=7.3e-14  Score=91.33  Aligned_cols=60  Identities=43%  Similarity=0.524  Sum_probs=39.3

Q ss_pred             CcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcccccccCcccceEEEecCCC
Q 034304            9 NFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRKAEKELNSRLSAPHFLSLTF   68 (98)
Q Consensus         9 g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~i~~~~~~VmHA~LmlsD~~   68 (98)
                      .|.+++|+|+|+..|++|||+||+++||++++.+++.+++....+...++||+|.+++..
T Consensus         3 ~~~~~~P~l~v~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~   62 (135)
T d1xy7a_           3 VFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSS   62 (135)
T ss_dssp             CEEEEEEEEEECTTCHHHHHHHHHHHHCCEEC---------------CCCEEEEEETTEE
T ss_pred             ceeeEccEEEEECCCHHHHHHHHHHHhCCEEEEEEecCCccccccCCcEEEEEEEECCee
Confidence            478999999995449999999999999999999998888776666678999998776643

>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: 3-demethylubiquinone-9 3-methyltransferase
domain: Hypothetical protein PA2721
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=8.1e-13  Score=93.48  Aligned_cols=59  Identities=15%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEE-EEEecCCcccccccCcccceEE-------EecCCCch
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEI-SRIMETKRKAEKELNSRLSAPH-------FLSLTFPM   70 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev-~~~~~pDG~i~~~~~~VmHA~L-------mlsD~~P~   70 (98)
                      +.|||.|.|| |||+||++||++|||+.++ ....+|+...+....+||||+|       |++|..|+
T Consensus         1 ~~~t~~L~F~-Gna~EAl~FY~~vFg~~~i~~~~~~~~~~p~~~~~~Vmha~l~i~g~~lm~sD~~~~   67 (156)
T d1u69a_           1 SKNTICLWYD-SAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGGPA   67 (156)
T ss_dssp             CCEEEEEEES-SCHHHHHHHHHHHSTTEEEEEEEECSSCBTTBCTTSEEEEEEEETTEEEEEEECCTT
T ss_pred             CCCcEeeeEC-CcHHHHHHHHHHHcCCCEEeEEEecCCCCCCCCCCcEEEEEEEECCeEEEeecCCCC
Confidence            3689999995 9999999999999976554 4445554433344578999987       55665553

>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptoalloteichus hindustanus [TaxId: 2017]

Probab=97.59  E-value=5.1e-05  Score=46.07  Aligned_cols=32  Identities=13%  Similarity=0.208  Sum_probs=28.7

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      +++++|.|.|  .|-+++++||+++||.++....
T Consensus         3 ~t~~~pvL~v--~D~~~s~~FY~~~LG~~~~~~~   34 (120)
T d1xrka_           3 LTSAVPVLTA--RDVAEAVEFWTDRLGFSRVFVE   34 (120)
T ss_dssp             EEEEEEEEEE--SCHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceeEEEEEEE--CCHHHHHHHHHHhhCCeEEEEC
Confidence            5788999999  8999999999999999987653

>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Streptomyces verticillus [TaxId: 29309]

Probab=97.30  E-value=0.00018  Score=43.99  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.5

Q ss_pred             cceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           10 FMGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        10 ~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      |..++|.|.+  .|-+++++||+++||.+....
T Consensus         4 ~~~~~pvL~v--~Dl~~s~~FY~~vLG~~~~~~   34 (122)
T d1jifa_           4 FLGAVPVLTA--VDVPANVSFWVDTLGFEKDFG   34 (122)
T ss_dssp             EEEEEEEEEE--SSHHHHHHHHHHTTCCEEEEE
T ss_pred             ceeeEEEEEc--CCHHHHHHHHHhhhCCceEec
Confidence            5778899999  899999999999999987543

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=97.06  E-value=0.00072  Score=44.25  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=25.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -+.|  +|+++|++||+++||.+++.....+.+
T Consensus        12 ~i~V--~D~~~a~~fY~~~lGf~~v~~~~~~~~   42 (163)
T d1t47a1          12 VFAV--GNAKQAAHYYSTAFGMQLVAYSGPENG   42 (163)
T ss_dssp             EEEC--SCHHHHHHHHHHTSCCEEEEEESGGGT
T ss_pred             EEEe--CCHHHHHHHHHHHhCCeEEeeeccccc
Confidence            4567  899999999999999999887765443

>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Uncharacterized protein Atu1953
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.00  E-value=0.00012  Score=43.94  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=26.4

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..+.|+|.+  .|-++|++||+++||.+....
T Consensus         2 ~ri~~~l~v--~d~~~a~~FY~~~lG~~~~~~   31 (111)
T d2pjsa1           2 RRVVANIAT--PEPARAQAFYGDILGMPVAMD   31 (111)
T ss_dssp             EEEEEEEEC--SCGGGGHHHHTTTTCCCEEEE
T ss_pred             eEEEEEEEe--CCHHHHHHHHHHhhCCceeec
Confidence            357899999  899999999999999987654

>d2c21a1 d.32.1.1 (A:3-141) Glyoxalase I (lactoylglutathione lyase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Leishmania major [TaxId: 5664]

Probab=96.89  E-value=0.00044  Score=41.71  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .|.|  .|-+++++||+++||.++..+...++
T Consensus         8 ~l~V--~Dl~~s~~FY~~~LG~~~~~~~~~~~   37 (139)
T d2c21a1           8 MIRV--GDLDRSIKFYTERLGMKVLRKWDVPE   37 (139)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEEEEGG
T ss_pred             EEEe--CCHHHHHHHHHHHhCCEeeccccccc
Confidence            5788  89999999999999999988876544

>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0012  Score=39.70  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      .|.|  .|-+++++||+++||-+...+...+.+.
T Consensus         7 ~i~V--~Dl~~s~~FY~~iLG~~~~~~~~~~~~~   38 (135)
T d1f9za_           7 MLRV--GDLQRSIDFYTKVLGMKLLRTSENPEYK   38 (135)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEEEETTTT
T ss_pred             EEEc--CCHHHHHHHHHHHhCCEEEeeccccccc
Confidence            4678  8999999999999999988887655543

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00079  Score=43.21  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=25.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -+.|  +|.++|++||+++||.+++.....+++
T Consensus        16 ~i~V--~Dl~~a~~fY~~~lGf~~~~~~~~~~~   46 (149)
T d1sqia1          16 TFWV--GNAKQAASFYCNKMGFEPLAYKGLETG   46 (149)
T ss_dssp             EEEC--SCHHHHHHHHHHHHCCEEEEEESGGGT
T ss_pred             EEEc--CCHHHHHHHHhhccceEEEEEecccCC
Confidence            3567  899999999999999999888765443

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Methylmalonyl-CoA epimerase
domain: Methylmalonyl-CoA epimerase
species: Propionibacterium shermanii [TaxId: 1752]

Probab=96.62  E-value=0.0055  Score=37.60  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -|.|  .|.++|++||+++||.+.......++.
T Consensus        12 ~i~v--~Dl~~a~~fY~~~lG~~~~~~~~~~~~   42 (145)
T d1jc4a_          12 AYAC--PDADEASKYYQETFGWHELHREENPEQ   42 (145)
T ss_dssp             EEEC--SCHHHHHHHHHHHHCCEEEEEEEETTT
T ss_pred             EEEe--CCHHHHHHHHHhhccCceeeeeeeccc
Confidence            4677  899999999999999998877765553

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Glyoxalase I (lactoylglutathione lyase)
domain: Glyoxalase I (lactoylglutathione lyase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0017  Score=42.29  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      --|.|  .|-+++++||+++||.+++.....++
T Consensus        27 i~l~V--~Dl~~si~FY~~vLG~~~~~~~~~~~   57 (176)
T d1qipa_          27 TMLRV--KDPKKSLDFYTRVLGMTLIQKCDFPI   57 (176)
T ss_dssp             EEEEC--SCHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred             EEEEe--CCHHHHHHHHHHhhCCeEeeeecccC
Confidence            45788  89999999999999999887766554

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.0023  Score=41.78  Aligned_cols=32  Identities=6%  Similarity=0.060  Sum_probs=27.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      -+.|  +|.++|++||+++||.+.+.+...+++.
T Consensus        17 ~i~V--~Dle~a~~fY~~~LGf~~~~~~~~~~~~   48 (167)
T d1sqda1          17 EFWC--GDATNVARRFSWGLGMRFSAKSDLSTGN   48 (167)
T ss_dssp             EEEC--SCHHHHHHHHHHHHTCEEEEEESGGGTC
T ss_pred             EEEe--CCHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence            4667  8999999999999999999888665544

>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein FosX
species: Mesorhizobium loti [TaxId: 381]

Probab=96.05  E-value=0.0055  Score=37.61  Aligned_cols=29  Identities=14%  Similarity=0.145  Sum_probs=24.0

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMET   46 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~p   46 (98)
                      -|.|  .|.+++++||+++||.+.+.....+
T Consensus         9 ~l~v--~d~~~s~~FY~~~lG~~~~~~~~~~   37 (130)
T d1r9ca_           9 TFIV--RDLERMTRILEGVFDAREVYASDTE   37 (130)
T ss_dssp             EEEE--SCHHHHHHHHHHHHCCEEEEEGGGS
T ss_pred             EEEe--CCHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4677  8999999999999999887765443

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=95.92  E-value=0.0026  Score=42.21  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=26.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      -+.|  +|.++|++||+++||.+.+.+...+++.
T Consensus        18 ~i~V--~D~e~a~~FY~~~LGf~~v~~~~~~~~~   49 (172)
T d1sp8a1          18 ELWC--ADAASAAGRFSFGLGAPLAARSDLSTGN   49 (172)
T ss_dssp             EEEC--SCHHHHHHHHHHHHTCCEEEEESGGGTC
T ss_pred             EEEe--CCHHHHHHHHHHhhCceEEEEecccccc
Confidence            3678  8999999999999999999887655543

>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypotheical protein SP0731
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.88  E-value=0.0021  Score=39.75  Aligned_cols=25  Identities=8%  Similarity=-0.005  Sum_probs=21.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      .|.|  .|-.+|++||+++||.+....
T Consensus         7 ~i~V--~di~~a~~FYe~~lg~~~~~~   31 (115)
T d2i7ra1           7 DIIV--SNVPQVCADLEHILDKKADYA   31 (115)
T ss_dssp             EEEC--SCHHHHHHHHHHHHTSCCSEE
T ss_pred             EEEE--CCHHHHHHHHHHhhCCceeee
Confidence            4788  899999999999999986543

>d1zswa1 d.32.1.10 (A:1-144) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=95.85  E-value=0.005  Score=38.56  Aligned_cols=30  Identities=17%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      -|.+  +|-+++++||+++||.+.+......+
T Consensus        11 ~l~v--~Dl~~s~~FY~~vLG~~~~~~~~~~~   40 (144)
T d1zswa1          11 SMVT--KNANENNHFYKNVLGLRRVKMTVNQD   40 (144)
T ss_dssp             EEEE--SCHHHHHHHHHTTTCCEEEEEEEETT
T ss_pred             EEEe--CCHHHHHHHHHHHhCCeeEeeecccc
Confidence            3677  89999999999999999887765444

>d1xqaa_ d.32.1.2 (A:) Hypothetical protein BC3580 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Hypothetical protein BC3580
species: Bacillus cereus [TaxId: 1396]

Probab=95.56  E-value=0.0088  Score=35.56  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      .|.+  .|-+++++||+++||.+...+.
T Consensus         8 ~l~v--~Dl~~a~~FY~~~lG~~~~~~~   33 (113)
T d1xqaa_           8 NLTV--ADVVAAREFLEKYFGLTCSGTR   33 (113)
T ss_dssp             EEEE--SCHHHHHHHHHHHHCCEEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHhhCCEEEEee
Confidence            5778  8999999999999999886653

>d1mpya2 d.32.1.3 (A:146-307) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=95.50  E-value=0.011  Score=38.44  Aligned_cols=31  Identities=3%  Similarity=0.167  Sum_probs=25.7

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      -|.+  .|-+++++||+++||.+++.+...+++
T Consensus        10 ~l~v--~Dle~s~~FY~~vLG~~~~~~~~~~~~   40 (162)
T d1mpya2          10 LMYG--DELPATYDLFTKVLGFYLAEQVLDENG   40 (162)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEEEECTTC
T ss_pred             EEEC--CCHHHHHHHHHHccCCEEEEEEccccc
Confidence            4677  799999999999999998877665544

>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Bleomycin resistance protein, BRP
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.29  E-value=0.014  Score=35.38  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=25.0

Q ss_pred             ceeeEEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMKLQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      ..++|-|.+  .|-+++++||++ ||.+....
T Consensus         2 ~~~~p~l~v--~Dl~~s~~FY~~-LGf~~~~~   30 (120)
T d1ecsa_           2 DQATPNLPS--RDFDSTAAFYER-LGFGIVFR   30 (120)
T ss_dssp             CEEEEEEEE--SCHHHHHHHHHT-TTCEEEEE
T ss_pred             CeEEEEEEe--CCHHHHHHHHHH-cCCeeEEe
Confidence            467899999  899999999987 99987653

>d1mpya1 d.32.1.3 (A:1-145) Catechol 2,3-dioxygenase (metapyrocatechase) {Pseudomonas putida, mt2 [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Catechol 2,3-dioxygenase (metapyrocatechase)
species: Pseudomonas putida, mt2 [TaxId: 303]

Probab=94.96  E-value=0.016  Score=36.16  Aligned_cols=30  Identities=30%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             ceee-EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           11 MGMK-LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        11 ~~lt-PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      +.|. -.|.|  .|-+++++||+++||.++..+
T Consensus         6 ~rl~Hv~l~v--~D~~~s~~FY~~vLG~~~~~~   36 (145)
T d1mpya1           6 MRPGHVQLRV--LDMSKALEHYVELLGLIEMDR   36 (145)
T ss_dssp             EEEEEEEEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             cEeeeEEEEe--CCHHHHHHHHHHhhCCEEEEe
Confidence            3344 35788  799999999999999987765

>d1npba_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Serratia marcescens [TaxId: 615]

Probab=94.81  E-value=0.014  Score=36.38  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.+  .|.+++++||+++||.+....
T Consensus         9 ~l~v--~d~~~~~~FY~~vLG~~~~~~   33 (140)
T d1npba_           9 TLAV--SDLQKSVTFWHELLGLTLHAR   33 (140)
T ss_dssp             EEEE--SCHHHHHHHHHTTSCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHHhCCEEEEE
Confidence            3566  899999999999999987644

>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Fosfomycin resistance protein A (FosA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.80  E-value=0.017  Score=35.67  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRI   43 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~   43 (98)
                      |.+  .|-+++++||+++||.+.....
T Consensus        10 l~v--~d~~~~~~FY~~~lG~~~~~~~   34 (134)
T d1nkia_          10 LAV--ADLPASIAFYRDLLGFRLEARW   34 (134)
T ss_dssp             EEE--SCHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEe--CCHHHHHHHHHHhhCCeEEEec
Confidence            667  8999999999999999876553

>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein YycE
domain: Hypothetical protein YycE
species: Bacillus subtilis [TaxId: 1423]

Probab=94.52  E-value=0.01  Score=37.20  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=25.7

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCc
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISRIMETKR   48 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG   48 (98)
                      --|.+  .|-+++++||+++||.+++.+...+++
T Consensus        13 Va~pv--~Dle~s~~FY~~vLG~~~~~~~~~~~~   44 (137)
T d1twua_          13 IARPT--GQLDEIIRFYEEGLCLKRIGEFSQHNG   44 (137)
T ss_dssp             EEEEC--SCHHHHHHHHTTTSCCCEEEEEEEETT
T ss_pred             Eeccc--CCHHHHHHHHHhccCCceeeeeccccc
Confidence            34457  799999999999999998877665544

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Hypothetical protein BC1747
domain: Hypothetical protein BC1747
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=94.46  E-value=0.06  Score=32.97  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEec
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIME   45 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~   45 (98)
                      |.|  .|-+++++||++ +|.+...+.+.
T Consensus        15 i~v--~Dle~s~~FY~~-LG~~~~~~~~~   40 (149)
T d1ss4a_          15 IVV--ESLDNAISFFEE-IGLNLEGRANV   40 (149)
T ss_dssp             EEC--SCHHHHHHHHHH-HTCEEEEEEEE
T ss_pred             EEe--CCHHHHHHHHHH-cCCcEeeeecc
Confidence            556  899999999998 99998877653

>d1lgta1 d.32.1.3 (A:2-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Burkholderia cepacia, formerly Pseudomonas cepacia [TaxId: 292]

Probab=93.88  E-value=0.034  Score=34.74  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      |.|  .|-+++++||++++|.++...
T Consensus        10 i~V--~Dl~~s~~FY~~vLG~~~~~~   33 (131)
T d1lgta1          10 FAV--SDVAAWRSFLTQKLGLMEAGT   33 (131)
T ss_dssp             EEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEe--CCHHHHHHHHHHhhCCceeec
Confidence            456  899999999999999987654

>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.69  E-value=0.025  Score=36.92  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEEEe
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      -|.+  .|.+++++||+++||.+....+.
T Consensus        15 ~l~v--~D~e~t~~FY~~vLG~~~~~~~~   41 (156)
T d1kw3b2          15 VRCV--PDTAKAMAFYTEVLGFVLSDIID   41 (156)
T ss_dssp             EEEC--SCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEec--CCHHHHHHHHHHhcCceeeeEEe
Confidence            3567  89999999999999999876654

>d1f1ua1 d.32.1.3 (A:2-147) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.56  E-value=0.028  Score=35.60  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=22.5

Q ss_pred             EEEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           15 LQLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        15 PYL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -.|.+  .|-+++++||+++||.+....
T Consensus        20 v~l~v--~Dl~~s~~FY~~~lG~~~~~~   45 (146)
T d1f1ua1          20 MEIVV--TDLAKSREFYVDVLGLHVTEE   45 (146)
T ss_dssp             EEEEE--SCHHHHHHHHTTTTCCEEEEE
T ss_pred             EEEEe--CCHHHHHHHHHhccCcEEEee
Confidence            35677  899999999999999998765

>d1f1ua2 d.32.1.3 (A:148-323) Homoprotocatechuate 2,3-dioxygenase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: Homoprotocatechuate 2,3-dioxygenase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.23  E-value=0.067  Score=35.40  Aligned_cols=30  Identities=7%  Similarity=0.069  Sum_probs=25.0

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      |.|  .|-+++++|| ++||.+...+...+++.
T Consensus        11 l~v--~Dle~s~~FY-e~LGf~~~d~~~~~~~~   40 (176)
T d1f1ua2          11 QVT--PDVPRGRAYL-EDLGFRVSEDIKDSDGV   40 (176)
T ss_dssp             EEE--SCHHHHHHHH-HHTTCEEEEEEECTTCC
T ss_pred             EEc--CCHHHHHHHH-HHCCCEEEEEEecCCcc
Confidence            567  7999999999 68999998888776654

>d1kw3b1 d.32.1.3 (B:1-132) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.57  E-value=0.072  Score=33.31  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             EEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           17 LLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        17 L~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      |.|  .|-+++.+||+++||.++...
T Consensus        10 i~v--~Dl~~s~~FY~~vLG~~~~~~   33 (132)
T d1kw3b1          10 FAV--KDVPAWDHFLTKSVGLMAAGS   33 (132)
T ss_dssp             EEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEe--CCHHHHHHHHHHHhCCceecc
Confidence            456  899999999999999987655

>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: BC1024-like
domain: Hypothetical protein BC1024
species: Bacillus cereus [TaxId: 1396]

Probab=92.47  E-value=0.07  Score=35.02  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev~~   42 (98)
                      -|.|  .|-+++++||+++||.+++..
T Consensus        17 ~L~V--~Dle~s~~FY~~vLG~~~~~~   41 (170)
T d1zswa2          17 ELTV--RRLDKMASTLTEIFGYTEVSR   41 (170)
T ss_dssp             EEEE--SCHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEe--CCHHHHHHHHHHHhCCEEEee
Confidence            4778  899999999999999988765

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Corn (Zea mays) [TaxId: 4577]

Probab=91.41  E-value=0.4  Score=33.69  Aligned_cols=38  Identities=11%  Similarity=0.056  Sum_probs=27.0

Q ss_pred             CCcceeeE-EEEEecCCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304            8 ANFMGMKL-QLLVEASKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus         8 ~g~~~ltP-YL~v~ngdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      .|+..|-- -++|  .|-++|++||+++||.+........+
T Consensus         5 ~Gl~~IDHI~i~V--~dld~a~~fY~~vLGf~~~~~~~~~~   43 (224)
T d1sp8a2           5 YGLSRFDHIVGNV--PELAPAAAYFAGFTGFHEFAEFTTED   43 (224)
T ss_dssp             CSEEEEEEEEEEC--SCHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             CCcCeeeeeEEec--cCHHHHHHHHHHHhCCEEEEEecccc
Confidence            45455542 3567  79999999999999999877665443

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=90.26  E-value=0.35  Score=33.35  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHhhCCEEEEEEecCC
Q 034304           22 SKAIDAIQFYKTAFGAVEISRIMETK   47 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~~~~pD   47 (98)
                      ++-.+|++||+++||.+.......++
T Consensus        16 ~~l~~a~~FY~~vlGf~~~~~~di~~   41 (203)
T d1cjxa2          16 GRMVYWANFYEKLFNFREARYFDIKG   41 (203)
T ss_dssp             THHHHHHHHHHHHHCCEEEEEEEEEC
T ss_pred             hhHHHHHHHHHHHhCCEEeEEEecCC
Confidence            47889999999999999877655433

>d1klla_ d.32.1.2 (A:) Mitomycin resistance protein D, MRD {Streptomyces lavendulae [TaxId: 1914]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Antibiotic resistance proteins
domain: Mitomycin resistance protein D, MRD
species: Streptomyces lavendulae [TaxId: 1914]

Probab=86.66  E-value=0.2  Score=30.23  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=17.5

Q ss_pred             EEEEecCCHHHHHHHHHHhhCCEEE
Q 034304           16 QLLVEASKAIDAIQFYKTAFGAVEI   40 (98)
Q Consensus        16 YL~v~ngdA~eAIeFYk~AFGAeev   40 (98)
                      -|.|  .|.+++++||++ +|.+..
T Consensus         7 ~l~V--~D~~~s~~FY~~-Lg~~~~   28 (128)
T d1klla_           7 AVVV--EDMAKSMEFYRK-MGVEIP   28 (128)
T ss_dssp             EEEE--SCHHHHHHHHHH-TTCCCC
T ss_pred             EEEc--CCHHHHHHHHHH-hCCccc
Confidence            4788  899999999976 776543

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.6  Score=32.60  Aligned_cols=21  Identities=10%  Similarity=0.074  Sum_probs=17.6

Q ss_pred             CCHHHHHHHHHHhhCCEEEEE
Q 034304           22 SKAIDAIQFYKTAFGAVEISR   42 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~   42 (98)
                      ++-++|++||+++||.+....
T Consensus        35 ~~ld~av~fY~~vfGf~~~~~   55 (210)
T d1sqia2          35 QEMESASEWYLKNLQFHRFWS   55 (210)
T ss_dssp             TCHHHHHHHHHHHHCCEEECC
T ss_pred             hhHHHHHHHHHHHhCCEEEEE
Confidence            459999999999999886543

>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Putative acetyltransferase EF0945
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.19  E-value=0.65  Score=28.71  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             CCcceeeEEEEEecCCHHHHHHHHHHhhCCEEEEEEecCCcc
Q 034304            8 ANFMGMKLQLLVEASKAIDAIQFYKTAFGAVEISRIMETKRK   49 (98)
Q Consensus         8 ~g~~~ltPYL~v~ngdA~eAIeFYk~AFGAeev~~~~~pDG~   49 (98)
                      .|+..+  +|.++ .+-..|+.||++ ||.+++..+..++.+
T Consensus       143 ~g~~~~--~l~v~-~~N~~a~~~Yek-~GF~~~~~~~~~~~~  180 (189)
T d1u6ma_         143 SGKQAL--GLNVD-FDNPGARKLYAS-KGFKDVTTMTISGHL  180 (189)
T ss_dssp             TTCSEE--EEEEE-TTCHHHHHHHHT-TTCEEEEEEEETTEE
T ss_pred             cCCcee--EEEEc-CCCHHHHHHHHH-CCCEEEEEEEECCcE
Confidence            344443  56664 455679999976 999999888766544

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Streptomyces avermitilis [TaxId: 33903]

Probab=80.89  E-value=0.56  Score=32.52  Aligned_cols=23  Identities=13%  Similarity=0.421  Sum_probs=19.2

Q ss_pred             CCHHHHHHHHHHhhCCEEEEEEe
Q 034304           22 SKAIDAIQFYKTAFGAVEISRIM   44 (98)
Q Consensus        22 gdA~eAIeFYk~AFGAeev~~~~   44 (98)
                      ++-.+|+.||+++||.+......
T Consensus        17 ~~l~~av~fY~~vfGf~~~~~~~   39 (199)
T d1t47a2          17 GRMNEWVGFYNKVMGFTNMKEFV   39 (199)
T ss_dssp             TCHHHHHHHHHHHHCCEECSCCB
T ss_pred             hhHHHHHHHHHHHhCCeEeeEec
Confidence            48999999999999998765443