Citrus Sinensis ID: 034307

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVIN
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccccEEEEEEEEEccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEccHHHHHHccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEHHHcccHHHHHHcEEEEHHccccccccHHHHHHHHHHHHccccccEEEEEEEEEcccccccccEEEEEccHHHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
MADKAITIRTRKFMTNRLLSRKQFVIDvlhpgranvsKAELKEKLARMYDVRDANAIFVFKFrthfgggkstgfgLIYDSvesakkfepkyrLIRVIN
Flexible Loop (DISEMBL)
madkaitirtrkfmtnrllsrkqfvidvlhpgranvskaelKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDsvesakkfepkyrlirvin
Low Complexity Region (SEG)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVIN
Disordered region (IsUnstruct)
*****ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV**
Disordered Region (DISOPRED)
****AIT*RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV**
Disordered Region (DISEMBL)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVIN
Disordered Region (DISPRO)
***KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVIN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVIN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q8LC83	133	40S ribosomal protein S24	yes	no	0.969	0.714	0.873	4e-45
Q9SS17	133	40S ribosomal protein S24	yes	no	0.969	0.714	0.926	7e-40
O59865	134	40S ribosomal protein S24	yes	no	0.948	0.694	0.680	8e-34
O13784	134	40S ribosomal protein S24	no	no	0.938	0.686	0.666	6e-33
P14249	148	40S ribosomal protein S24	N/A	no	0.959	0.635	0.652	8e-32
Q75K27	126	40S ribosomal protein S24	yes	no	0.969	0.753	0.642	2e-31
Q962Q6	132	40S ribosomal protein S24	N/A	no	0.959	0.712	0.663	4e-31
P0CX32	135	40S ribosomal protein S24	yes	no	0.948	0.688	0.673	1e-30
P0CX31	135	40S ribosomal protein S24	yes	no	0.948	0.688	0.673	1e-30
Q90YQ0	131	40S ribosomal protein S24	N/A	no	0.918	0.687	0.637	9e-30

>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/95 (87%), Positives = 92/95 (96%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct: 1  MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIR
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIR 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 94/95 (98%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1  MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIR
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95

Arabidopsis thaliana (taxid: 3702)

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24b PE=2 SV=3

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 3  DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
           +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D+  +  F  
Sbjct: 2  SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60

Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
          RTHFGGG+STGF LIYDS ES KKFEP YRL+RV
Sbjct: 61 RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRV 94

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps24a PE=3 SV=3

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 4  KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63
          +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   DA+A+  F  R
Sbjct: 3  EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLR 61

Query: 64 THFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
          TH+GGG++TGF LIYD VE+ KKFEP YRL+RV
Sbjct: 62 THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRV 94

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P14249|RS24_MUCCL 40S ribosomal protein S24 OS=Mucor circinelloides f. lusitanicus GN=RPS24 PE=3 SV=1

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 2   ADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61
           AD A+TIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF 
Sbjct: 20  ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFG 78

Query: 62  FRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
           F+THFGGGK+TGF LIYD+VE+ K FEPK+RL+R+
Sbjct: 79  FKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRI 113

Mucor circinelloides f. lusitanicus (taxid: 29924)

>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 78/95 (82%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M   A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F
Sbjct: 1  MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R
Sbjct: 61 GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLAR 95

Dictyostelium discoideum (taxid: 44689)

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V   + +FVF
Sbjct: 1  MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R
Sbjct: 60 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 94

Spodoptera frugiperda (taxid: 7108)

>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1  MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1  MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 1/91 (1%)

Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
          ++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF F+T
Sbjct: 4  SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKT 62

Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           FGGGK+TGF ++YDS++ AKK EPKYRL R
Sbjct: 63 QFGGGKTTGFAMVYDSLDYAKKNEPKYRLAR 93

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
449449533	137	PREDICTED: 40S ribosomal protein S24-2-l	0.969	0.693	0.936	4e-46
445612	133	ribosomal protein S19	0.969	0.714	0.915	1e-45
351726138	137	uncharacterized protein LOC100499673 [Gl	0.969	0.693	0.905	1e-45
307136061	137	40S ribosomal protein s24 [Cucumis melo	0.969	0.693	0.915	2e-45
357441493	137	40S ribosomal protein S24 [Medicago trun	0.969	0.693	0.905	3e-45
351727795	137	uncharacterized protein LOC100499852 [Gl	0.969	0.693	0.894	3e-45
358248670	137	uncharacterized protein LOC100802918 [Gl	0.969	0.693	0.894	4e-45
449442901	137	PREDICTED: 40S ribosomal protein S24-2-l	0.969	0.693	0.915	5e-45
351721636	137	uncharacterized protein LOC100305568 [Gl	0.969	0.693	0.884	5e-45
224099795	133	predicted protein [Populus trichocarpa]	0.969	0.714	0.905	6e-45

>gi|449449533|ref|XP_004142519.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449518360|ref|XP_004166210.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 94/95 (98%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+YDV+DANAIFVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|445612|prf||1909359A ribosomal protein S19

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 94/95 (98%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLL+RKQF+IDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726138|ref|NP_001238140.1| uncharacterized protein LOC100499673 [Glycine max] gi|255625693|gb|ACU13191.1| unknown [Glycine max]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/95 (90%), Positives = 92/95 (96%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKL RMYDV+D N +FVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136061|gb|ADN33912.1| 40S ribosomal protein s24 [Cucumis melo subsp. melo]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 93/95 (97%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELKEKLAR+YDV+D NAIFVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441493|ref|XP_003591024.1| 40S ribosomal protein S24 [Medicago truncatula] gi|217075254|gb|ACJ85987.1| unknown [Medicago truncatula] gi|355480072|gb|AES61275.1| 40S ribosomal protein S24 [Medicago truncatula] gi|388501578|gb|AFK38855.1| unknown [Medicago truncatula] gi|388521723|gb|AFK48923.1| unknown [Medicago truncatula]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/95 (90%), Positives = 93/95 (97%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+YDV+D N +FVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRL+R
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVR 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727795|ref|NP_001236917.1| uncharacterized protein LOC100499852 [Glycine max] gi|255627123|gb|ACU13906.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 93/95 (97%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMYDV+D N +FVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYD++E+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIR 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248670|ref|NP_001240176.1| uncharacterized protein LOC100802918 [Glycine max] gi|255637268|gb|ACU18964.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 93/95 (97%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLARMY+V+D N +FVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYD+VE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIR 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442901|ref|XP_004139219.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus] gi|449482936|ref|XP_004156448.1| PREDICTED: 40S ribosomal protein S24-2-like [Cucumis sativus]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 92/95 (96%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+YDV+D NAIFVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721636|ref|NP_001237216.1| uncharacterized protein LOC100305568 [Glycine max] gi|255625937|gb|ACU13313.1| unknown [Glycine max]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 92/95 (96%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKE+L RMYDV+D N +FVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKERLGRMYDVKDTNTVFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVE+AKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099795|ref|XP_002311621.1| predicted protein [Populus trichocarpa] gi|222851441|gb|EEE88988.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/95 (90%), Positives = 93/95 (97%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          MADKA+TIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKLA +Y+V+D N+IFVF
Sbjct: 1  MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASLYEVKDLNSIFVF 60

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYDSVESAKK+EPKYRLIR
Sbjct: 61 KFRTHFGGGKSTGFGLIYDSVESAKKYEPKYRLIR 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2114830	133	AT3G04920 [Arabidopsis thalian	0.969	0.714	0.926	2.8e-43
TAIR|locus:2143784	133	AT5G28060 [Arabidopsis thalian	0.969	0.714	0.873	2.8e-41
POMBASE|SPBC17G9.07	134	rps2402 "40S ribosomal protein	0.938	0.686	0.688	4.2e-31
POMBASE|SPAC17G6.06	134	rps2401 "40S ribosomal protein	0.938	0.686	0.666	1.1e-30
DICTYBASE|DDB_G0275473	126	rps24 "40S ribosomal protein S	0.948	0.738	0.659	4.9e-30
UNIPROTKB|F1NF89	130	RPS24 "40S ribosomal protein S	0.908	0.684	0.711	6.2e-30
UNIPROTKB|Q56JU9	131	RPS24 "40S ribosomal protein S	0.908	0.679	0.711	6.2e-30
UNIPROTKB|E2QWF8	132	RPS24 "40S ribosomal protein S	0.908	0.674	0.711	6.2e-30
UNIPROTKB|F1PH35	132	RPS24 "40S ribosomal protein S	0.908	0.674	0.711	6.2e-30
UNIPROTKB|H9GWG6	132	RPS24 "40S ribosomal protein S	0.908	0.674	0.711	6.2e-30

TAIR|locus:2114830 AT3G04920 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 88/95 (92%), Positives = 94/95 (98%)

Query:     1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
             MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct:     1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIR
Sbjct:    61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2143784 AT5G28060 [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 83/95 (87%), Positives = 92/95 (96%)

Query:     1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
             MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct:     1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query:    61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIR
Sbjct:    61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIR 95

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005730 "nucleolus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

POMBASE|SPBC17G9.07 rps2402 "40S ribosomal protein S24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 64/93 (68%), Positives = 77/93 (82%)

Query:     4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63
             +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D+  +  F  R
Sbjct:     3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLR 61

Query:    64 THFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
             THFGGG+STGF LIYDS ES KKFEP YRL+RV
Sbjct:    62 THFGGGRSTGFALIYDSTESMKKFEPHYRLVRV 94

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

POMBASE|SPAC17G6.06 rps2401 "40S ribosomal protein S24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/93 (66%), Positives = 78/93 (83%)

Query:     4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63
             +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   DA+A+  F  R
Sbjct:     3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLR 61

Query:    64 THFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
             TH+GGG++TGF LIYD VE+ KKFEP YRL+RV
Sbjct:    62 THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRV 94

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

DICTYBASE|DDB_G0275473 rps24 "40S ribosomal protein S24" [Dictyostelium discoideum (taxid:44689)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/94 (65%), Positives = 79/94 (84%)

Query:     3 DKA-ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61
             DKA + +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F 
Sbjct:     2 DKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFG 61

Query:    62 FRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R
Sbjct:    62 FKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLAR 95

GO:0005615 "extracellular space" evidence=IDA

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NF89 RPS24 "40S ribosomal protein S24" [Gallus gallus (taxid:9031)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             FGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q56JU9 RPS24 "40S ribosomal protein S24" [Bos taurus (taxid:9913)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             FGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QWF8 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             FGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PH35 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             FGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9GWG6 RPS24 "40S ribosomal protein S24" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:     6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
             +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTH
Sbjct:     5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTH 63

Query:    66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
             FGGGK+TGFG+IYDS++ AKK EPK+RL R
Sbjct:    64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56JU9	RS24_BOVIN	No assigned EC number	0.7032	0.9183	0.6870	yes	no
O59865	RS24B_SCHPO	No assigned EC number	0.6808	0.9489	0.6940	yes	no
Q8LC83	RS242_ARATH	No assigned EC number	0.8736	0.9693	0.7142	yes	no
C5A442	RS24_THEGJ	No assigned EC number	0.3333	0.9081	0.9081	yes	no
Q5JIY8	RS24_PYRKO	No assigned EC number	0.3444	0.9081	0.9081	yes	no
Q9SS17	RS241_ARATH	No assigned EC number	0.9263	0.9693	0.7142	yes	no
Q75K27	RS24_DICDI	No assigned EC number	0.6421	0.9693	0.7539	yes	no
P62848	RS24_MESAU	No assigned EC number	0.7032	0.9183	0.6766	N/A	no
P62849	RS24_MOUSE	No assigned EC number	0.7032	0.9183	0.6766	yes	no
Q8U442	RS24_PYRFU	No assigned EC number	0.3333	0.9081	0.8989	yes	no
B6YW35	RS24_THEON	No assigned EC number	0.3111	0.9081	0.9081	yes	no
C6A0F5	RS24_THESM	No assigned EC number	0.3555	0.9081	0.9081	yes	no
P0CX32	RS24B_YEAST	No assigned EC number	0.6736	0.9489	0.6888	yes	no
P58746	RS24_PYRHO	No assigned EC number	0.3111	0.9081	0.8989	yes	no
P0CX31	RS24A_YEAST	No assigned EC number	0.6736	0.9489	0.6888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
PTZ00071	132	PTZ00071, PTZ00071, 40S ribosomal protein S24; Pro	9e-46
COG2004	107	COG2004, RPS24A, Ribosomal protein S24E [Translati	2e-35
pfam01282	83	pfam01282, Ribosomal_S24e, Ribosomal protein S24e	1e-34
PRK01178	99	PRK01178, rps24e, 30S ribosomal protein S24e; Revi	4e-18

>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional

 Score =  143 bits (362), Expect = 9e-46
 Identities = 59/92 (64%), Positives = 75/92 (81%)

Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
            T+RTRKF+ N LL+RKQFV++VLHPG+  VSK ++KEKLA+ Y V DA  I +F F+T
Sbjct: 5  EFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKT 64

Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
           FGGGK+TGFGLIYD++ + KKFEPKYRLIR+
Sbjct: 65 KFGGGKTTGFGLIYDNLAALKKFEPKYRLIRL 96

Length = 132

>gnl|CDD|224915 COG2004, RPS24A, Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

 Score =  116 bits (292), Expect = 2e-35
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
          A+ I+  +   N LL RK+ V  V H G    S+ E++EKLA M    D   + V   +T
Sbjct: 1  AMEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLGA-DKELVVVDYIKT 59

Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
           FG G+S G+  IYDSVE AKK EP+Y L R 
Sbjct: 60 EFGKGRSKGYAKIYDSVERAKKIEPEYILERN 91

Length = 107

>gnl|CDD|216409 pfam01282, Ribosomal_S24e, Ribosomal protein S24e

 Score =  113 bits (285), Expect = 1e-34
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 24 FVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES 83
           V +VLHPGRA  S+ E++EKLA+M  V D + + VF F+T FGGGKSTGF LIYDS+E+
Sbjct: 1  MVFEVLHPGRATPSRKEVREKLAKMLKV-DKDLVVVFGFKTEFGGGKSTGFALIYDSLEA 59

Query: 84 AKKFEPKYRLIR 95
          AKKFEPKYRL R
Sbjct: 60 AKKFEPKYRLER 71

Length = 83

>gnl|CDD|179239 PRK01178, rps24e, 30S ribosomal protein S24e; Reviewed

 Score = 71.8 bits (177), Expect = 4e-18
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
          N LL R++   +V H G A  S+ ++++KLA M +  D   + V K +T +G GKS G+ 
Sbjct: 11 NPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLNA-DKELVVVRKIKTEYGMGKSKGYA 69

Query: 76 LIYDSVESAKKFEPKYRLIR 95
           +YD  E A+K EPKY L R
Sbjct: 70 KVYDDKERARKIEPKYILER 89

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PTZ00071	132	40S ribosomal protein S24; Provisional	100.0
PRK01178	99	rps24e 30S ribosomal protein S24e; Reviewed	100.0
KOG3424	132	consensus 40S ribosomal protein S24 [Translation,	100.0
COG2004	107	RPS24A Ribosomal protein S24E [Translation, riboso	100.0
PF01282	84	Ribosomal_S24e: Ribosomal protein S24e; InterPro:	100.0

>PTZ00071 40S ribosomal protein S24; Provisional

Probab=100.00  E-value=4.1e-45  Score=257.79  Aligned_cols=94  Identities=63%  Similarity=1.078  Sum_probs=91.6

Q ss_pred             ccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q 034307            4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES   83 (98)
Q Consensus         4 ~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~   83 (98)
                      ++|+|+|+++++||||+|+||+|+|+|||.|||||+||+++||++|+|+|+++|||++|+|+||+|+|+|||+||||.|+
T Consensus         4 ~~~~ir~rk~~~NpLL~RkE~~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IYds~e~   83 (132)
T PTZ00071          4 AEFTVRTRKFLVNPLLNRKQFVVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIYDNLAA   83 (132)
T ss_pred             ccEEEEEeeeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEECCHHH
Confidence            36999999999999999999999999999999999999999999999669999999999999999999999999999999


Q ss_pred             HHhcCcceeeeccC
Q 034307           84 AKKFEPKYRLIRVI   97 (98)
Q Consensus        84 ~kk~Epk~~l~Rn~   97 (98)
                      |++|||+|+|.||+
T Consensus        84 ~kk~Epk~~l~Rng   97 (132)
T PTZ00071         84 LKKFEPKYRLIRLG   97 (132)
T ss_pred             HHhhCchheeeecC
Confidence            99999999999996

>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed

Probab=100.00  E-value=3.6e-44  Score=242.58  Aligned_cols=90  Identities=38%  Similarity=0.599  Sum_probs=88.2

Q ss_pred             EEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 034307            7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK   86 (98)
Q Consensus         7 ~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~kk   86 (98)
                      .|.|.++++||||+|||++|+|.|||+|||||+||+++||++|+ +|+++|||++|+|+||+|+|+|||+||||.|+|++
T Consensus         2 ei~I~~~~~N~LL~Rke~~~~v~h~g~~tpsr~eirekLa~~~~-~~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk   80 (99)
T PRK01178          2 EIKIISDKENPLLGRREIKFEVYHEGSATPSRKDVRKKLAAMLN-ADKELVVVRKIKTEYGMGKSKGYAKVYDDKERARK   80 (99)
T ss_pred             cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHC-cCCCEEEEEccCccCCCceEEEEEEEECCHHHHHh
Confidence            68899999999999999999999999999999999999999999 69999999999999999999999999999999999


Q ss_pred             cCcceeeeccC
Q 034307           87 FEPKYRLIRVI   97 (98)
Q Consensus        87 ~Epk~~l~Rn~   97 (98)
                      |||+|+|.||+
T Consensus        81 ~Epk~~l~Rn~   91 (99)
T PRK01178         81 IEPKYILERNK   91 (99)
T ss_pred             hCchheeeecC
Confidence            99999999996

>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.7e-44  Score=247.69  Aligned_cols=96  Identities=77%  Similarity=1.202  Sum_probs=92.7

Q ss_pred             CCCccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 034307            1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS   80 (98)
Q Consensus         1 m~~~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds   80 (98)
                      |+| +|||+|+++++|+||+|+|++++|+|||.|+||++||+||||+||++ ++|.|+||+|+|+||+|+|+|||+||||
T Consensus         1 ~~~-~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt-~~d~V~vfgfrt~~GggkstgfalIYds   78 (132)
T KOG3424|consen    1 MSD-AVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKT-TPDAVFVFGFRTHFGGGKSTGFALIYDS   78 (132)
T ss_pred             CCc-cEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcC-CcceEEEEEeeeccCCcccceeeeeeeh
Confidence            555 89999999999999999999999999999999999999999999994 9999999999999999999999999999


Q ss_pred             HHHHHhcCcceeeeccCC
Q 034307           81 VESAKKFEPKYRLIRVIN   98 (98)
Q Consensus        81 ~e~~kk~Epk~~l~Rn~~   98 (98)
                      .|.+++|||+|+|+|++.
T Consensus        79 ve~akkfEpkyrl~r~gl   96 (132)
T KOG3424|consen   79 VEYAKKFEPKYRLVRLGL   96 (132)
T ss_pred             HHHHHhcCcceeeeeccc
Confidence            999999999999999863

>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-42  Score=235.97  Aligned_cols=92  Identities=42%  Similarity=0.604  Sum_probs=89.9

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|.++++||||+|||+.|+|+|+|++||||+||+++||++|| +|+++|+|++|+|+||+|+|+|||+||||.+.|+
T Consensus         2 ~ei~I~~~r~NpLL~RkEi~~~v~h~g~~TPSr~evrekla~~l~-~d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~   80 (107)
T COG2004           2 MEIKILEKRDNPLLKRKEIVFVVYHEGSPTPSRKEVREKLAAMLG-ADKELVVVDYIKTEFGKGRSKGYAKIYDSVERAK   80 (107)
T ss_pred             ceEEeehcccCccccceEEEEEEEeCCCCCCCHHHHHHHHHHHHC-CCcceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence            689999999999999999999999999999999999999999999 5999999999999999999999999999999999


Q ss_pred             hcCcceeeeccCC
Q 034307           86 KFEPKYRLIRVIN   98 (98)
Q Consensus        86 k~Epk~~l~Rn~~   98 (98)
                      +|||+|+|.||++
T Consensus        81 ~iEp~yiL~Rn~~   93 (107)
T COG2004          81 KIEPEYILERNGG   93 (107)
T ss_pred             hcCcceEEEeccc
Confidence            9999999999963

>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.2e-34  Score=190.70  Aligned_cols=73  Identities=59%  Similarity=0.955  Sum_probs=68.2

Q ss_pred             EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcCcceeeeccC
Q 034307           24 FVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRVI   97 (98)
Q Consensus        24 i~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~kk~Epk~~l~Rn~   97 (98)
                      |+|+|.|+|+|||||+||+++||++||+ |+++|||++|+|+||+++|+|||+||||.|+|+++||+|+|.||+
T Consensus         1 ~~~~v~h~g~~Tpsr~ei~~klA~~~~~-~~~~ivv~~~~t~fG~~~s~g~a~IYd~~e~~kk~Ep~~~l~R~~   73 (84)
T PF01282_consen    1 MVFEVLHPGKPTPSRKEIREKLAAMLNV-DPDLIVVFGIKTEFGGGKSTGFAKIYDSAEALKKFEPKYRLKRNG   73 (84)
T ss_dssp             EEEEEE-SSSSS--HHHHHHHHHHHHTS-TGCCEEEEEEEESSSSSEEEEEEEEESSHHHHHHHSTHHHHHHTT
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHhCC-CCCeEEEeccEecCCCceEEEEEEEeCCHHHHHHhCcHHHhHhcC
Confidence            6899999999999999999999999996 999999999999999999999999999999999999999999994

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3iz6_U	138	Localization Of The Small Subunit Ribosomal Protein		7e-43
3izb_U	135	Localization Of The Small Subunit Ribosomal Protein		8e-32
2xzm_P	149	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-21
3zey_T	137	High-resolution Cryo-electron Microscopy Structure		1e-12
3j20_V	99	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-10
2v94_A	107	Crystal Structure Of P. Abyssi Rps24 Length = 107		4e-07

>pdb|3IZ6|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 138

Iteration: 1
 Score =  168 bits (425), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 93/99 (93%), Gaps = 4/99 (4%)
Query: 1  MAD----KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56
          MAD     A+T+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+V+D+N 
Sbjct: 1  MADTKTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNC 60
Query: 57 IFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          IFVFKFRTHFGGGKSTGFGLIYD++++AKK+EPKYRLIR
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99

>pdb|3IZB|U Chain U, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 135

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)
Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1  MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93

>pdb|2XZM|P Chain P, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 149

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
           I IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V DA  + V+ F T
Sbjct: 2  TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60
Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
           +GGGKSTGF L+YD+ +   K+EP YRL +V
Sbjct: 61 QYGGGKSTGFALVYDNQQYLLKYEPNYRLRKV 92

>pdb|3ZEY|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 137

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 6   ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAEL-KEKLARMYDVRDANAIFVFKFRT 64
           +T+RT +F  N+LL+RKQFV++V HPG      A+L + +LA +Y V D N I VF F+T
Sbjct: 10  VTVRTSQFKVNKLLNRKQFVVEVNHPGWCGTVPAKLIRNRLASLYKVADENQISVFGFKT 69
Query: 65  HFGGGKSTGFGLIYDSVESAKKFEPKYRLIRV 96
            FGGGK+TGFGLIYD + + K+ EP YR  R+
Sbjct: 70  KFGGGKTTGFGLIYDDLAAMKRIEPNYRKARL 101

>pdb|3J20|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 99

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 6  ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
          + IR ++   N+L+ RK+   ++ HPG    S+ ++K KL  M D+     +  +  R++
Sbjct: 1  MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          FG   S G+   YDS E     EP+Y LIR
Sbjct: 60 FGSYISKGYAKAYDSKERMLYIEPEYILIR 89

>pdb|2V94|A Chain A, Crystal Structure Of P. Abyssi Rps24 Length = 107

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I+  +   N+L+ RK+   ++ HPG    S+ ++K KL    D+     +  +  R++FG
Sbjct: 11 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDLNPETTVIQY-IRSYFG 69
Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            KS G+   Y   +     EP+Y LIR
Sbjct: 70 SYKSKGYAKYYYDKDRXLYIEPEYILIR 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	1e-40
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	1e-40
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	3e-40
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	2e-39
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	4e-37
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	5e-37
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	7e-34

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Length = 107

 Score =  128 bits (324), Expect = 1e-40
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
           + I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +     +   R+
Sbjct: 8  EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRS 66

Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          +FG  KS G+   Y   +     EP+Y LIR
Sbjct: 67 YFGSYKSKGYAKYYYDKDRMLYIEPEYILIR 97

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 138

 Score =  129 bits (326), Expect = 1e-40
 Identities = 75/95 (78%), Positives = 90/95 (94%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
              A+T+RTRKFMTNRLLSRKQFV++VLHPGRANVSKA+LKEKLA++Y+V+D+N IFVF
Sbjct: 5  KTAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVF 64

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          KFRTHFGGGKSTGFGLIYD++++AKK+EPKYRLIR
Sbjct: 65 KFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y Length = 135

 Score =  128 bits (324), Expect = 3e-40
 Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 2/95 (2%)

Query: 1  MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
          M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF
Sbjct: 1  MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58

Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVR 93

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3 Length = 101

 Score =  125 bits (316), Expect = 2e-39
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I+  K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T +G
Sbjct: 3  IKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYG 60

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            +S G+  +Y+  +  K+ E +Y L R
Sbjct: 61 MQESKGYAKLYEDADRMKQVEQEYVLKR 88

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P Length = 149

 Score =  121 bits (304), Expect = 4e-37
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 5  AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64
           I IRT+K + N LLSR+Q  +DVLHP     SK +++E+LA+   V DA  + V+ F T
Sbjct: 2  TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFST 60

Query: 65 HFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           +GGGKSTGF L+YD+ +   K+EP YRL +
Sbjct: 61 QYGGGKSTGFALVYDNQQYLLKYEPNYRLRK 91

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3 Length = 98

 Score =  119 bits (300), Expect = 5e-37
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          +  ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +   G
Sbjct: 3  LIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTG 61

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            +  G+  IY    SA  +EP Y LIR
Sbjct: 62 KHEIEGYTKIYADKPSAMLYEPDYELIR 89

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Length = 102

 Score =  111 bits (279), Expect = 7e-34
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3  ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            ++ G+  IY+  ++    E K  L +
Sbjct: 61 KLEAEGYAKIYNDEKAMATIETKSVLEK 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3u5c_Y	135	RP50, 40S ribosomal protein S24-A; translation, ri	100.0
2v94_A	107	RPS24, 30S ribosomal protein S24E; ribonucleoprote	100.0
2g1d_A	98	30S ribosomal protein S24E; complete proteome, rib	100.0
1xn9_A	101	30S ribosomal protein S24E; beta+alpha, GFT struct	100.0
2xzm_P	149	RPS24E; ribosome, translation; 3.93A {Tetrahymena	100.0
1ywx_A	102	30S ribosomal protein S24E; GFT MRR16, nesgc, stru	100.0
3iz6_U	138	40S ribosomal protein S24 (S24E); eukaryotic ribos	100.0
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	81.39

>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y

Probab=100.00  E-value=4.1e-47  Score=267.81  Aligned_cols=95  Identities=67%  Similarity=1.086  Sum_probs=92.3

Q ss_pred             CCCccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 034307            1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS   80 (98)
Q Consensus         1 m~~~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds   80 (98)
                      |+| +|||+|++|++||||+|+||+|+|+|||.|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||
T Consensus         1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds   78 (135)
T 3u5c_Y            1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS   78 (135)
T ss_dssp             -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred             CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence            777 89999999999999999999999999999999999999999999995 9999999999999999999999999999


Q ss_pred             HHHHHhcCcceeeeccC
Q 034307           81 VESAKKFEPKYRLIRVI   97 (98)
Q Consensus        81 ~e~~kk~Epk~~l~Rn~   97 (98)
                      +|+|+++||+|+|+||+
T Consensus        79 ~d~akk~EPkyrL~R~g   95 (135)
T 3u5c_Y           79 VAEAKKFEPTYRLVRYG   95 (135)
T ss_dssp             HHHHHHHSCHHHHHHHT
T ss_pred             HHHHHhcCchheEeecc
Confidence            99999999999999986

>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3

Probab=100.00  E-value=7.4e-46  Score=252.82  Aligned_cols=92  Identities=29%  Similarity=0.522  Sum_probs=90.1

Q ss_pred             cEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 034307            5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA   84 (98)
Q Consensus         5 ~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~   84 (98)
                      .++|+|+++++||||+|||++|+|+|||+|||||+||+++||++|++ ++++|||++|+|+||+|+|+|||+||||.|+|
T Consensus         8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a   86 (107)
T 2v94_A            8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM   86 (107)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred             eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence            48999999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             HhcCcceeeeccC
Q 034307           85 KKFEPKYRLIRVI   97 (98)
Q Consensus        85 kk~Epk~~l~Rn~   97 (98)
                      ++|||+|+|+||+
T Consensus        87 kk~Epky~L~R~g   99 (107)
T 2v94_A           87 LYIEPEYILIRDG   99 (107)
T ss_dssp             HHHSCHHHHHHTT
T ss_pred             HhhCchheeeecC
Confidence            9999999999996

>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3

Probab=100.00  E-value=6.7e-46  Score=249.68  Aligned_cols=91  Identities=26%  Similarity=0.346  Sum_probs=88.9

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|+++++||||+||||+|+|+|||+|||||+||+++||++|++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 Mei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~k   79 (98)
T 2g1d_A            1 MDLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAM   79 (98)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHH
T ss_pred             CcEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence            3799999999999999999999999999999999999999999995 999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      ++||+|+|+||+
T Consensus        80 k~Epky~l~R~~   91 (98)
T 2g1d_A           80 LYEPDYELIRNG   91 (98)
T ss_dssp             HHCTTSCSCSSC
T ss_pred             hhCcceeeeecC
Confidence            999999999996

>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3

Probab=100.00  E-value=7.3e-45  Score=245.74  Aligned_cols=90  Identities=24%  Similarity=0.416  Sum_probs=87.9

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      +.|+|.++++||||+||||+|+|+| |+|||||+||+++||+||++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 Mei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~ak   78 (101)
T 1xn9_A            1 MDIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMK   78 (101)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred             CcEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence            3799999999999999999999999 99999999999999999995 999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      ++||+|+|+||+
T Consensus        79 k~Epky~L~R~g   90 (101)
T 1xn9_A           79 QVEQEYVLKRNA   90 (101)
T ss_dssp             HHHTGGGCCCCS
T ss_pred             hhCchheeeecC
Confidence            999999999996

>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P

Probab=100.00  E-value=4.1e-45  Score=260.92  Aligned_cols=92  Identities=49%  Similarity=0.858  Sum_probs=90.6

Q ss_pred             cEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 034307            5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA   84 (98)
Q Consensus         5 ~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~   84 (98)
                      +|||+|+++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus         2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a   80 (149)
T 2xzm_P            2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL   80 (149)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred             cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence            79999999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             HhcCcceeeeccC
Q 034307           85 KKFEPKYRLIRVI   97 (98)
Q Consensus        85 kk~Epk~~l~Rn~   97 (98)
                      ++|||+|+|+||+
T Consensus        81 Kk~EPkyrL~Rng   93 (149)
T 2xzm_P           81 LKYEPNYRLRKVK   93 (149)
T ss_dssp             HHHSCHHHHHHTT
T ss_pred             HhhCchheeeecc
Confidence            9999999999996

>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3

Probab=100.00  E-value=1.2e-44  Score=245.10  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=87.6

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      +.|+|.++++||||+||||+|+|+| ++|||||+||+++||+||++ ++++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 Mei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~ak   78 (102)
T 1ywx_A            1 MDISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMA   78 (102)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred             CcEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHH
Confidence            3689999999999999999999999 78999999999999999995 999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      +|||+|+|+||+
T Consensus        79 k~Epky~L~R~g   90 (102)
T 1ywx_A           79 TIETKSVLEKNK   90 (102)
T ss_dssp             HSSCHHHHHHSC
T ss_pred             hhCchhheeecC
Confidence            999999999996

>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-46  Score=264.57  Aligned_cols=94  Identities=80%  Similarity=1.285  Sum_probs=91.2

Q ss_pred             ccEEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q 034307            4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES   83 (98)
Q Consensus         4 ~~~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~   83 (98)
                      .+|||+|++|++||||+|+||+|+|+|||.|||||+||+++||+||+++++|+|||++|+|+||+|+|+|||+||||+|+
T Consensus         8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~   87 (138)
T 3iz6_U            8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA   87 (138)
T ss_dssp             SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred             ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence            37999999999999999999999999999999999999999999999339999999999999999999999999999999


Q ss_pred             HHhcCcceeeeccC
Q 034307           84 AKKFEPKYRLIRVI   97 (98)
Q Consensus        84 ~kk~Epk~~l~Rn~   97 (98)
                      |+++||+|+|+||+
T Consensus        88 aKk~EPkyrL~R~g  101 (138)
T 3iz6_U           88 AKKYEPKYRLIRNG  101 (138)
T ss_dssp             HHSSCCCBTTTTTC
T ss_pred             HHhcCchheEeecc
Confidence            99999999999996

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.39  E-value=4.6  Score=23.82  Aligned_cols=45  Identities=24%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307           34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK   86 (98)
Q Consensus        34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk   86 (98)
                      ...+..||++.++.. ++  .+.-++.+     ..|.+.|||.| |++.+.+.+
T Consensus        20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~   65 (91)
T 2dgw_A           20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ   65 (91)
T ss_dssp             SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred             CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence            567789999988877 76  34444433     35678899988 677766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2v94a1	93	d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococc	1e-41
d2g1da1	98	d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermopl	7e-40
d1ywxa1	102	d.12.1.3 (A:1-102) Ribosomal protein S24e {Methano	6e-38
d1xn9a_	101	d.12.1.3 (A:) Ribosomal protein S24e {Methanosarci	4e-34

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  129 bits (327), Expect = 1e-41
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I+  +   N+L+ RK+   ++ HPG    S+ ++K KL  M D+ +     +   R++FG
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFG 61

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            KS G+   Y   +     EP+Y LIR
Sbjct: 62 SYKSKGYAKYYYDKDRMLYIEPEYILIR 89

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

 Score =  125 bits (316), Expect = 7e-40
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 6  ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
          + I+ ++   N +L RK+    +        S+ E+KE +A+   V D   + V   +  
Sbjct: 3  LIIKEKR--DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQL 59

Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
           G  +  G+  IY    SA  +EP Y LIR
Sbjct: 60 TGKHEIEGYTKIYADKPSAMLYEPDYELIR 89

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

 Score =  120 bits (304), Expect = 6e-38
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 8  IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
          I       N LL R++    V     A  S  ++K KL  + +  +   + V      FG
Sbjct: 3  ISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFG 60

Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIR 95
            ++ G+  IY+  ++    E K  L +
Sbjct: 61 KLEAEGYAKIYNDEKAMATIETKSVLEK 88

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

 Score =  110 bits (278), Expect = 4e-34
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 6  ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
          I I   K   N LL+R++    V + G +  S+ +++ KLA M +      + + + +T 
Sbjct: 3  IKIIKDK--KNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNA-PLELLVIQRIKTE 58

Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
          +G  +S G+  +Y+  +  K+ E +Y L R
Sbjct: 59 YGMQESKGYAKLYEDADRMKQVEQEYVLKR 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2v94a1	93	Ribosomal protein S24e {Pyrococcus abyssi [TaxId:	100.0
d2g1da1	98	Ribosomal protein S24e {Thermoplasma acidophilum [	100.0
d1ywxa1	102	Ribosomal protein S24e {Methanococcus maripaludis	100.0
d1xn9a_	101	Ribosomal protein S24e {Methanosarcina mazei [TaxI	100.0
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	86.32
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	83.62

>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=6e-44  Score=236.60  Aligned_cols=91  Identities=30%  Similarity=0.528  Sum_probs=88.7

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|+++++||||+|+|+.|+|.|||+|||||+||+++||++||+ |+++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 Mei~i~~~~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~-~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k   79 (93)
T d2v94a1           1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRML   79 (93)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHHH
T ss_pred             CcEEEEEeccCCCcccEEEEEEEEcCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeCccCCCCceEEEEEEEECCHHHHH
Confidence            3689999999999999999999999999999999999999999995 999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      ++||+|++.||+
T Consensus        80 k~Ep~y~l~R~~   91 (93)
T d2v94a1          80 YIEPEYILIRDG   91 (93)
T ss_dssp             HHSCHHHHHHTT
T ss_pred             hhChHHhhhhcc
Confidence            999999999996

>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.6e-43  Score=236.43  Aligned_cols=91  Identities=25%  Similarity=0.326  Sum_probs=88.4

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|+++++||||+|+|+.|+|.|||+|||||+||+++||++|| +|+++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 Mei~I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~-~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k   79 (98)
T d2g1da1           1 MDLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEG-VDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAM   79 (98)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHH-SCSTTEECCCCCCCSSSSEEEEEEEEESHHHHHH
T ss_pred             CcEEEEeeccCCCcccEEEEEEEEeCCCCCCCHHHHHHHHHHHHC-CCcCEEEEEcCEecCCCceEEEEEEEECCHHHHH
Confidence            368999999999999999999999999999999999999999999 5999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      +|||+|+|.||+
T Consensus        80 k~Ep~y~l~R~~   91 (98)
T d2g1da1          80 LYEPDYELIRNG   91 (98)
T ss_dssp             HHCTTSCSCSSC
T ss_pred             hhCchhhhhhcC
Confidence            999999999995

>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanococcus maripaludis [TaxId: 39152]

Probab=100.00  E-value=1.5e-42  Score=233.15  Aligned_cols=90  Identities=22%  Similarity=0.289  Sum_probs=87.3

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|.++++||||+|+|+.|+|.||| |||||+||+++||++|| +|+++|||++|+|+||+|+|+|||+||||.|+|+
T Consensus         1 MeieI~~~k~N~LL~RkEi~~~v~h~g-~Tpsr~ei~~kla~~~~-~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k   78 (102)
T d1ywxa1           1 MDISIISDRNNPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLN-ANKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMA   78 (102)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEECSS-CCCCHHHHHHHHHHHHT-SCSTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred             CceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHHHC-cCcCEEEEEcCEecCCCCeEEEEEEEECCHHHHH
Confidence            368999999999999999999999997 99999999999999999 5999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      +|||+|+|.||+
T Consensus        79 k~Ep~y~l~R~~   90 (102)
T d1ywxa1          79 TIETKSVLEKNK   90 (102)
T ss_dssp             HSSCHHHHHHSC
T ss_pred             hhCchheeeecC
Confidence            999999999985

>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: Ribosomal protein S24e
domain: Ribosomal protein S24e
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=6.6e-42  Score=229.65  Aligned_cols=90  Identities=26%  Similarity=0.442  Sum_probs=87.2

Q ss_pred             EEEEEeeeeeccCcceeEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 034307            6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK   85 (98)
Q Consensus         6 ~~i~i~k~~~N~LL~RkEi~~~v~h~~~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~IYds~e~~k   85 (98)
                      ++|+|.++++||||+|+|+.|+|.||| +||||+||+++||++|| +|+++|||++|+|+||+|+|+|||+||||.++|+
T Consensus         1 MeieI~~~k~N~LL~R~Ei~~~v~h~g-~Tpsr~ei~~kla~~~~-~~~~~vvv~~~~t~fG~~~stG~a~IYd~~e~~k   78 (101)
T d1xn9a_           1 MDIKIIKDKKNPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLN-APLELLVIQRIKTEYGMQESKGYAKLYEDADRMK   78 (101)
T ss_dssp             CEEEEEEEEEETTTTEEEEEEEEECSS-SCCCHHHHHHHHHHHTT-CCTTTEEEEEEEECSSSSEEEEEEEECSCHHHHH
T ss_pred             CceEEEeeccCCCcccEEEEEEEECCC-CCCCHHHHHHHHHHhHC-cCcCEEEEEcCcccCCCceEEEEEEEECCHHHHH
Confidence            368999999999999999999999997 89999999999999999 5999999999999999999999999999999999


Q ss_pred             hcCcceeeeccC
Q 034307           86 KFEPKYRLIRVI   97 (98)
Q Consensus        86 k~Epk~~l~Rn~   97 (98)
                      ++||+|+|.||+
T Consensus        79 ~~Ep~y~l~R~~   90 (101)
T d1xn9a_          79 QVEQEYVLKRNA   90 (101)
T ss_dssp             HHHTGGGCCCCS
T ss_pred             hhCchheeeecC
Confidence            999999999985

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.32  E-value=0.65  Score=27.52  Aligned_cols=49  Identities=20%  Similarity=0.359  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 034307           33 RANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF   87 (98)
Q Consensus        33 ~~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk~   87 (98)
                      ....+.+||++.+++ || .=.++-++.+-.    .|.+.|||.| |.|.+.+.+.
T Consensus        17 p~~~te~~l~~~f~~-~G-~i~~v~i~~~~~----tg~~~g~afV~f~~~~~a~~a   66 (104)
T d1p1ta_          17 PYEATEEQLKDIFSE-VG-PVVSFRLVYDRE----TGKPKGYGFCEYQDQETALSA   66 (104)
T ss_dssp             CTTSCHHHHHHHHHT-TS-CCSEEEEEEETT----TTEEEEEEEEECSCHHHHHHH
T ss_pred             CCcCCHHHHHHhhhc-cc-cccccccccccc----eeccCCceEEEECCHHHHHHH
Confidence            356788999988865 55 123443443333    3688999998 8888877663

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.62  E-value=2.4  Score=23.80  Aligned_cols=50  Identities=24%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 034307           34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK   86 (98)
Q Consensus        34 ~TPsr~ei~~klA~~~~v~~~~~ivV~~~~t~fG~~~s~g~a~I-Yds~e~~kk   86 (98)
                      .+.+.++|++-+.. +| .=.+..++.+ +..-+.+.+.|||.| |.|.+.+.+
T Consensus         8 ~~~t~~~l~~~F~~-~G-~v~~v~i~~~-~~~~~~~~~kG~afV~f~~~~~A~~   58 (85)
T d2cpfa1           8 FSTTEETLKGVFSK-VG-AIKSCTISKK-KNKAGVLLSMGFGFVEYKKPEQAQK   58 (85)
T ss_dssp             TTCCHHHHHHHHHT-TS-CEEEEEEEEE-ECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred             CCCCHHHHHHHHHH-hC-Cccccceecc-cccccccccceEEEEEECCHHHHHH
Confidence            46678888887755 66 1233333332 233344578888876 777776654