Citrus Sinensis ID: 034366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS
Secondary Structure (PSIPRED)
ccccccEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccccEEEEEEccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mlegkasiketdmPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDkiygggwqcvvgsnfgcyfthkhgtFIYFSLETLNFLIFKAAITPSS
Flexible Loop (DISEMBL)
mlegkasiketdmpVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS
Low Complexity Region (SEG)
MLEGKASIKETDMPVKmqvqamasasqaLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS
Disordered region (IsUnstruct)
**************************QALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAI****
Disordered Region (DISOPRED)
**EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIF*AAI****
Disordered Region (DISEMBL)
MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS
Disordered Region (DISPRO)
****KASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
O02414	89	Dynein light chain LC6, f	N/A	no	0.916	0.988	0.488	7e-17
P63170	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	8e-17
P63169	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	8e-17
P63168	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	8e-17
P61273	89	Dynein light chain 1, cyt	N/A	no	0.916	0.988	0.477	8e-17
P63167	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	8e-17
P61285	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	8e-17
Q22799	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	3e-16
Q94748	89	Probable dynein light cha	N/A	no	0.916	0.988	0.466	3e-16
Q24117	89	Dynein light chain 1, cyt	yes	no	0.916	0.988	0.477	4e-16

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M E KA IK  DMP  MQ  A+  A+QAL+ +++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNI--EKDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAVLLFKS 88

Anthocidaris crassispina (taxid: 7629)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Homo sapiens (taxid: 9606)

>sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  ++  A+QAL+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Bos taurus (taxid: 9913)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M++ KA IK  DM   MQ  A+  A+QAL+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q94748|DYL2_SCHMA Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M E KA IK  DM   MQ  A+ +A+ ALD Y++     +A +IKKEFD+ Y   W C+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEI--EKDVAAYIKKEFDRKYNPNWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G +FG Y TH+   FIYF L+   FL+FK+
Sbjct: 59 GKHFGSYVTHETQHFIYFYLQERAFLLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Schistosoma mansoni (taxid: 6183)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +MQ  A+  A+QAL+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
255549960	112	cytoplasmic dynein light chain, putative	1.0	0.857	0.791	5e-39
224070903	94	predicted protein [Populus trichocarpa]	0.979	1.0	0.797	7e-39
225445214	96	PREDICTED: dynein light chain 1, cytopla	0.968	0.968	0.781	1e-37
351722486	93	uncharacterized protein LOC100500277 [Gl	0.937	0.967	0.811	4e-37
225442599	95	PREDICTED: dynein light chain LC6, flage	0.947	0.957	0.802	9e-37
356557277	743	PREDICTED: rho guanine nucleotide exchan	0.937	0.121	0.777	2e-36
449464666	92	PREDICTED: dynein light chain 1, cytopla	0.937	0.978	0.788	3e-36
297830196	93	hypothetical protein ARALYDRAFT_479066 [	0.947	0.978	0.780	4e-36
357454935	91	Dynein light chain [Medicago truncatula]	0.937	0.989	0.788	5e-36
238478830	94	RHO guanyl-nucleotide exchange factor 11	0.979	1.0	0.765	6e-36

>gi|255549960|ref|XP_002516031.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223544936|gb|EEF46451.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 85/96 (88%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA I++TDMPVKMQ+QAMA ASQALDLYDV+D  SIA HIKKEFD  YGGGWQCVV
Sbjct: 1  MLEGKALIEDTDMPVKMQIQAMACASQALDLYDVLDCKSIAAHIKKEFDMKYGGGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS 96
          GSNFGC+FTH  G+FIYF+LETLNFLIFK A +PS+
Sbjct: 61 GSNFGCFFTHSKGSFIYFTLETLNFLIFKGASSPSA 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070903|ref|XP_002303289.1| predicted protein [Populus trichocarpa] gi|222840721|gb|EEE78268.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 85/94 (90%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA I++TDMP+KMQ+QAMASASQALDLYDV+D  S+A+HIKKEFD  YGGGWQCVV
Sbjct: 1  MLEGKALIEDTDMPLKMQIQAMASASQALDLYDVLDCKSVASHIKKEFDLRYGGGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITP 94
          GSNFGC+FTH  GTFIYF+LETLNFLIFK A +P
Sbjct: 61 GSNFGCFFTHSKGTFIYFTLETLNFLIFKGASSP 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445214|ref|XP_002280869.1| PREDICTED: dynein light chain 1, cytoplasmic [Vitis vinifera] gi|297738812|emb|CBI28057.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 84/96 (87%), Gaps = 3/96 (3%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA IKE+DMPVKMQ QAMASASQALD+YDV D +SIA HIKKEFD ++G GWQCVV
Sbjct: 1  MLEGKAVIKESDMPVKMQKQAMASASQALDIYDVSDCVSIAAHIKKEFDGLFGCGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITPSS 96
          GSNFGC+FTH  GTFIYF++ETLNFL+FKA   PSS
Sbjct: 61 GSNFGCFFTHSQGTFIYFAMETLNFLVFKA---PSS 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722486|ref|NP_001235710.1| uncharacterized protein LOC100500277 [Glycine max] gi|255629903|gb|ACU15302.1| unknown [Glycine max]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 77/90 (85%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA +KETDM  KMQ+ AMASASQALDLYDV D ISIA HIKKEFD +YG GWQCVV
Sbjct: 1  MLEGKAMVKETDMSTKMQIHAMASASQALDLYDVYDCISIAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          GSNFGCYFTH  GTFIYF+L TLNFLIFK 
Sbjct: 61 GSNFGCYFTHSSGTFIYFALATLNFLIFKG 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442599|ref|XP_002284463.1| PREDICTED: dynein light chain LC6, flagellar outer arm [Vitis vinifera] gi|297743256|emb|CBI36123.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 73/91 (80%), Positives = 81/91 (89%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA I++TDMPVKMQ+QAMA ASQALD+YDV+D  SIA +IKKEFD IYG GWQCVV
Sbjct: 1  MLEGKALIEDTDMPVKMQIQAMACASQALDIYDVLDYKSIAAYIKKEFDMIYGTGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAA 91
          GSNFGC+FTH  GTFIYF+LETLNFLIFK A
Sbjct: 61 GSNFGCFFTHSKGTFIYFTLETLNFLIFKGA 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557277|ref|XP_003546944.1| PREDICTED: rho guanine nucleotide exchange factor 8-like [Glycine max]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/90 (77%), Positives = 78/90 (86%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA I++TDMP KMQ+QAMASAS+ALDLYDV D  SIA HIKKEFD  YG GWQCVV
Sbjct: 1  MLEGKAVIEDTDMPDKMQIQAMASASEALDLYDVFDCTSIAAHIKKEFDTKYGSGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          GS+FGC+FTH  GTF+YF+LETLNFLIFK 
Sbjct: 61 GSSFGCFFTHSKGTFVYFTLETLNFLIFKG 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464666|ref|XP_004150050.1| PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus] gi|449520231|ref|XP_004167137.1| PREDICTED: LOW QUALITY PROTEIN: dynein light chain 1, cytoplasmic-like [Cucumis sativus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 81/90 (90%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA++KETDM  KMQ+ AMASASQALDL+DV DS+S+A+HIKK+FD  YG GWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          GSNFGC+FTH  GTFIYFSLETLNFLIFK+
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830196|ref|XP_002882980.1| hypothetical protein ARALYDRAFT_479066 [Arabidopsis lyrata subsp. lyrata] gi|297328820|gb|EFH59239.1| hypothetical protein ARALYDRAFT_479066 [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 79/91 (86%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA ++ETDMPVKMQ+QAM  ASQ+LDL+DV DSISIA HIKKEFD+ YG GWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQIQAMRIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAA 91
          G+NFGC+FTH  GTFIYF L TLNFLIFK A
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454935|ref|XP_003597748.1| Dynein light chain [Medicago truncatula] gi|355486796|gb|AES67999.1| Dynein light chain [Medicago truncatula]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 79/90 (87%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA I++TDMP KMQ+QAMA AS+ALDLYDV+D  SIA HIKKEFD  YGGGWQCVV
Sbjct: 1  MLEGKAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          GS+FGC+FTH  GTFIYF+LETLNFLIFK 
Sbjct: 61 GSSFGCFFTHSKGTFIYFTLETLNFLIFKG 90

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478830|ref|NP_001154419.1| RHO guanyl-nucleotide exchange factor 11 [Arabidopsis thaliana] gi|6850349|gb|AAF29412.1|AC022354_11 dynein light chain, putative [Arabidopsis thaliana] gi|12323118|gb|AAG51538.1|AC037424_3 unknown protein; 73838-74229 [Arabidopsis thaliana] gi|38454092|gb|AAR20740.1| At1g52250 [Arabidopsis thaliana] gi|46402458|gb|AAS92331.1| At1g52250 [Arabidopsis thaliana] gi|332194653|gb|AEE32774.1| RHO guanyl-nucleotide exchange factor 11 [Arabidopsis thaliana]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 80/94 (85%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          MLEGKA ++++DMPVKMQ+QAMA ASQALDL+DV D  SIA HIKKEFD+ YG GWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAAITP 94
          GSNFGC+FTH  GTFIYF LETL FLIFK A TP
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.947	0.978	0.692	1.4e-30
TAIR|locus:2131764	103	AT4G27360 "AT4G27360" [Arabido	0.958	0.893	0.456	1.1e-18
TAIR|locus:2147725	209	AT5G20110 "AT5G20110" [Arabido	0.927	0.425	0.415	3e-14
UNIPROTKB|F1ME41	89	F1ME41 "Uncharacterized protei	0.916	0.988	0.422	2.1e-13
UNIPROTKB|P61285	89	DYNLL1 "Dynein light chain 1,	0.916	0.988	0.422	2.1e-13
UNIPROTKB|E2RK00	89	DYNLL1 "Uncharacterized protei	0.916	0.988	0.422	2.1e-13
UNIPROTKB|P63167	89	DYNLL1 "Dynein light chain 1,	0.916	0.988	0.422	2.1e-13
UNIPROTKB|D9U8D1	89	LC8 "Uncharacterized protein"	0.916	0.988	0.422	2.1e-13
UNIPROTKB|P61273	89	DYNLL1 "Dynein light chain 1,	0.916	0.988	0.422	2.1e-13
UNIPROTKB|P63169	89	DYNLL1 "Dynein light chain 1,	0.916	0.988	0.422	2.1e-13

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 63/91 (69%), Positives = 69/91 (75%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             MLEGKA ++ETDMPVK            LDL+DV DSISIA HIKKEFD+ YG GWQCVV
Sbjct:     1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAA 91
             G+NFGC+FTH  GTFIYF L TLNFLIFK A
Sbjct:    61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2131764 AT4G27360 "AT4G27360" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/92 (45%), Positives = 57/92 (61%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             MLEGKA + +TDM               LD +DV +   IA  IKKEFD+ YG GWQC+V
Sbjct:     1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKAAI 92
             G++FG + TH  G FI+FS+ +L  L+FK ++
Sbjct:    61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSV 92

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2147725 AT5G20110 "AT5G20110" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 37/89 (41%), Positives = 49/89 (55%)

Query:     8 IKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCY 67
             I   DMP              LD  +   S  +A ++KKEFDK YG  W C+VGS+FG +
Sbjct:   119 ILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSF 178

Query:    68 FTHKHGTFIYFSLETLNFLIFKAAITPSS 96
              TH  G FIYFS++ L  L+FK  + P+S
Sbjct:   179 VTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

UNIPROTKB|F1ME41 F1ME41 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MYDRKAIIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61285 DYNLL1 "Dynein light chain 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0072686 "mitotic spindle" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RK00 DYNLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P63167 DYNLL1 "Dynein light chain 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030235 "nitric-oxide synthase regulator activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0008180 "signalosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007292 "female gamete generation" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|D9U8D1 LC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61273 DYNLL1 "Dynein light chain 1, cytoplasmic" [Macaca fascicularis (taxid:9541)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

UNIPROTKB|P63169 DYNLL1 "Dynein light chain 1, cytoplasmic" [Oryctolagus cuniculus (taxid:9986)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/90 (42%), Positives = 48/90 (53%)

Query:     1 MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
             M + KA IK  DM  +            L+ Y++   I  A HIKKEFDK Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDI--AAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
             G NFG Y TH+   FIYF L  +  L+FK+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.4777	0.9166	0.9887	yes	no
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.3902	0.8333	0.9302	yes	no
Q9UR05	DYL1_SCHPO	No assigned EC number	0.4588	0.8645	0.9764	yes	no
Q86A88	DYL_DICDI	No assigned EC number	0.3882	0.8645	0.9120	yes	no
O94111	DYL1_EMENI	No assigned EC number	0.4337	0.8437	0.8617	yes	no
Q6CWX4	DYL1_KLULA	No assigned EC number	0.3678	0.8854	0.9770	yes	no
P63170	DYL1_RAT	No assigned EC number	0.4777	0.9166	0.9887	yes	no
P61285	DYL1_BOVIN	No assigned EC number	0.4777	0.9166	0.9887	yes	no
Q24117	DYL1_DROME	No assigned EC number	0.4777	0.9166	0.9887	yes	no
Q759T0	DYL1_ASHGO	No assigned EC number	0.3720	0.875	0.9545	yes	no
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.3932	0.9062	0.9560	yes	no
P63167	DYL1_HUMAN	No assigned EC number	0.4777	0.9166	0.9887	yes	no
Q02647	DYL1_YEAST	No assigned EC number	0.3928	0.8541	0.8913	yes	no
O96860	DYL2_DROME	No assigned EC number	0.4777	0.9166	0.9887	yes	no
P63168	DYL1_MOUSE	No assigned EC number	0.4777	0.9166	0.9887	yes	no
P63169	DYL1_RABIT	No assigned EC number	0.4777	0.9166	0.9887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	3e-36
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	2e-25
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-22

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  117 bits (295), Expect = 3e-36
 Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 4  GKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSN 63
          GKA +K  DMP +MQ  A+  A++AL+ ++      IA HIKKEFDK YG  W C+VG N
Sbjct: 1  GKAVVKNADMPEEMQEDAIECAAEALEKFN--VEKDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 64 FGCYFTHKHGTFIYFSLETLNFLIFKAA 91
          FG Y TH+   FIYF +  L FL+FK  
Sbjct: 59 FGSYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 90.3 bits (224), Expect = 2e-25
 Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 1  MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA +K  DM   MQ  A+  A+QAL+ +++     IA +IKKEFDK Y   W C+V
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNI--EKDIAAYIKKEFDKKYNPTWHCIV 59

Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 60 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 89

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 83.9 bits (207), Expect = 2e-22
 Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 8   IKETDMPVKMQVQAMASASQALD-LYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGC 66
           ++ +DMP+ +Q +A + A   LD +   +DS  +A  +KKEFD  YG  W C+VG++FG 
Sbjct: 38  VRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGS 97

Query: 67  YFTHKHGTFIYFSLETLNFLIFKAAITP 94
           Y TH  G F+YFS++ +  L+FK A+ P
Sbjct: 98  YVTHSTGGFLYFSIDKVYILLFKTAVEP 125

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.67
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	92.83
PF15650	89	Tox-REase-9: Restriction endonuclease fold toxin 9	80.81

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=5.8e-43  Score=217.92  Aligned_cols=90  Identities=56%  Similarity=0.909  Sum_probs=86.5

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEe
Q 034366            1 MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSL   80 (96)
Q Consensus         1 M~~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~   80 (96)
                      |.+.+++|+.+|||++||++|+++|.+|+++|+. +.++||..||++||++||++||||||++|||+|||++++||||++
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~   79 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL   79 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence            7889999999999999999999999999999995 239999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 034366           81 ETLNFLIFKAA   91 (96)
Q Consensus        81 ~~~~illfkt~   91 (96)
                      |.++|||||+.
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            99999999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=2.5e-42  Score=217.87  Aligned_cols=89  Identities=46%  Similarity=0.801  Sum_probs=86.8

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEe
Q 034366            1 MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSL   80 (96)
Q Consensus         1 M~~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~   80 (96)
                      |++++++|+.+|||++||++|+++|.+|+++|+.+  +|||++||+.||++|||+||||||++|||++||++++||||++
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~--kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~   79 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL   79 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence            78889999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 034366           81 ETLNFLIFKAA   91 (96)
Q Consensus        81 ~~~~illfkt~   91 (96)
                      |+++|||||++
T Consensus        80 ~~~~vLlfK~~   90 (90)
T PTZ00059         80 GQVAILLFKSG   90 (90)
T ss_pred             CCEEEEEEecC
Confidence            99999999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=6.8e-41  Score=222.49  Aligned_cols=93  Identities=41%  Similarity=0.810  Sum_probs=87.5

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeC
Q 034366            3 EGKASIKETDMPVKMQVQAMASASQALDLYDV-VDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLE   81 (96)
Q Consensus         3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~-~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~   81 (96)
                      +.+++|+.+|||++||++|+++|.+|+++++. .+.++||++||++||++|||+||||||++|||+|||++++||||++|
T Consensus        33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig  112 (128)
T PLN03058         33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID  112 (128)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            47899999999999999999999999999863 23389999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecCCCCC
Q 034366           82 TLNFLIFKAAITPS   95 (96)
Q Consensus        82 ~~~illfkt~~~~~   95 (96)
                      +++||||||+.+|-
T Consensus       113 ~~aiLLfKt~~~~~  126 (128)
T PLN03058        113 KVYILLFKTAVEPL  126 (128)
T ss_pred             CEEEEEEeccCccC
Confidence            99999999999984

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=3.4e-41  Score=211.77  Aligned_cols=89  Identities=47%  Similarity=0.812  Sum_probs=84.6

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEe
Q 034366            1 MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSL   80 (96)
Q Consensus         1 M~~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~   80 (96)
                      |++++++|+.+|||++||++|+++|.+|+++++++  +++|++||++||++|||+||||||++|||++||++++++||++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~--~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~   78 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDE--KEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI   78 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence            89999999999999999999999999999999976  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 034366           81 ETLNFLIFKAA   91 (96)
Q Consensus        81 ~~~~illfkt~   91 (96)
                      ++++||||||+
T Consensus        79 ~~~~~li~kt~   89 (89)
T PF01221_consen   79 GNIAFLIFKTQ   89 (89)
T ss_dssp             TTEEEEEEEE-
T ss_pred             CCEEEEEEecC
Confidence            99999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.67  E-value=0.00068  Score=41.01  Aligned_cols=53  Identities=15%  Similarity=0.290  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHhhcccCCCceEEEEeC-ccceeEEEccCcEEEEEeCCEEEEEEe
Q 034366           36 DSISIATHIKKEFDKIYGGGWQCVVGS-NFGCYFTHKHGTFIYFSLETLNFLIFK   89 (96)
Q Consensus        36 ~~~~iA~~IK~~lD~~yg~~WhciVG~-~Fgs~vt~~~~~~i~F~~~~~~illfk   89 (96)
                      +..++++.|.+.++++||+.+-||+++ +|.....+. ..|--...++...++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            347999999999999999999999999 777666666 78888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=92.83  E-value=1.5  Score=33.39  Aligned_cols=68  Identities=16%  Similarity=0.296  Sum_probs=44.0

Q ss_pred             HHHHHhhhcCCCCHHHHHHHHHHhhcccCC-CceEEEEeC--------ccceeEEEccCcEEE-EEeCCEEEEEEecC
Q 034366           24 SASQALDLYDVVDSISIATHIKKEFDKIYG-GGWQCVVGS--------NFGCYFTHKHGTFIY-FSLETLNFLIFKAA   91 (96)
Q Consensus        24 ~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg-~~WhciVG~--------~Fgs~vt~~~~~~i~-F~~~~~~illfkt~   91 (96)
                      .+.+..+.+....-.+.|..||+.||+-.. -.+-++|-.        .|-....+....+|. |.-|+..++||||-
T Consensus       175 ~v~~~~d~~~~~sn~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~  252 (345)
T PF05075_consen  175 FVEEVQDNNSHLSNEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK  252 (345)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence            444444444422227899999999999654 468888822        111222345555665 67899999999994

>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9

Probab=80.81  E-value=1.4  Score=27.64  Aligned_cols=49  Identities=22%  Similarity=0.462  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHHHHhhhcCCCCHHHHH------HHHHHhhcccCCCceEEEEe
Q 034366           13 MPVKMQVQAMASASQALDLYDVVDSISIA------THIKKEFDKIYGGGWQCVVG   61 (96)
Q Consensus        13 M~~~~q~~~~~~~~~a~~~~~~~~~~~iA------~~IK~~lD~~yg~~WhciVG   61 (96)
                      ||.-.+-++++.....+=+.++.+.+.|.      +-=|++|...||.+|.|+|-
T Consensus        33 lpsGkR~D~id~~~k~IyELKPnNPr~ik~G~kQl~~Y~~el~~~~G~~W~~~l~   87 (89)
T PF15650_consen   33 LPSGKRPDFIDFETKIIYELKPNNPRAIKRGLKQLENYKQELEKIYGGGWKTRLE   87 (89)
T ss_pred             cCCCCcCccccCCcceEEEecCCCHHHHHHHHHHHHHHHHHhcCccCCCeeEEee
Confidence            33333444555444433334433333333      23357899999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		9e-14
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		4e-13
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		7e-13
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		7e-13
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		8e-13
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-12
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-12
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		2e-12
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-12
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		3e-12
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		1e-11
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		7e-11
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-10

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +            L+ Y++     IA HIKKEFDK Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 5  KASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNF 64
          KA IK  DM  +            L+ Y++     IA HIKKEFDK Y   W C+VG NF
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNI--EKDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GCYFTHKHGTFIYFSLETLNFLIFKA 90
          G Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +            L+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +            L+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +            L+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM  +            L+ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFK 89
          G NFG Y TH+   FIYF L  +  L+FK
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM               ++ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DMP              L+ Y++     IA  IKKEFD+ +   W CVV
Sbjct: 1  MADRKAVIKNADMPEDLQQDAIDCANQALEKYNI--EKDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF +  +  L+FK+
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM               ++ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 4  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 91

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM               ++ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 6  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GSNFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 93

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8   IKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCY 67
           +K  DM  +            L  Y+V     IA HIKKEFD+ Y   W CVVG NFG Y
Sbjct: 21  VKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSY 78
Query: 68  FTHKHGTFIYFSLETLNFLIFKAA 91
            TH+   FIYF +  +  L+FK+ 
Sbjct: 79  VTHETKNFIYFYIGQVAILLFKSG 102

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1  MLEGKASIKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
          M + KA IK  DM               ++ Y++     IA +IKKEFDK Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNI--EKDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GS--NFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          G   NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKS 90

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 8  IKETDMPVKXXXXXXXXXXXXLDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCY 67
          +K +D+  K            LD Y +     IA  +KK+ D  YG  W  +VG NFG Y
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSY 73
Query: 68 FTHKHGTFIYFSLETLNFLIFKAA 91
           TH+ G F+YF +  L FL+FK A
Sbjct: 74 VTHEKGHFVYFYIGPLAFLVFKTA 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	9e-35
1yo3_A	102	Dynein light chain 1; structural genomics consorti	1e-34

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  113 bits (285), Expect = 9e-35
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 3  EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGS 62
          +    +K +D+  K++   +  +  ALD Y +     IA  +KK+ D  YG  W  +VG 
Sbjct: 11 KSTPIVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGK 68

Query: 63 NFGCYFTHKHGTFIYFSLETLNFLIFKAA 91
          NFG Y TH+ G F+YF +  L FL+FK A
Sbjct: 69 NFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  113 bits (285), Expect = 1e-34
 Identities = 40/91 (43%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 1   MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVV 60
           ++   + +K  DM  +MQ+ A+  A+QAL  Y+V     IA HIKKEFD+ Y   W CVV
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVV 71

Query: 61  GSNFGCYFTHKHGTFIYFSLETLNFLIFKAA 91
           G NFG Y TH+   FIYF +  +  L+FK+ 
Sbjct: 72  GRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0
3e9v_A	120	Protein BTG2; B-cell translocation gene 2, structu	81.09

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=4.4e-45  Score=229.10  Aligned_cols=89  Identities=46%  Similarity=0.799  Sum_probs=85.7

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEe
Q 034366            1 MLEGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSL   80 (96)
Q Consensus         1 M~~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~   80 (96)
                      |++++++|+.+|||++||++|+++|.+|+++|+.+  ++||++||++||++|||+||||||++|||+|||++++||||++
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~   78 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI   78 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence            88999999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 034366           81 ETLNFLIFKAA   91 (96)
Q Consensus        81 ~~~~illfkt~   91 (96)
                      |+++||||||+
T Consensus        79 g~~~iLlfKtg   89 (89)
T 3rjs_A           79 GQVAVLLFKSG   89 (89)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEecC
Confidence            99999999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-43  Score=223.11  Aligned_cols=87  Identities=38%  Similarity=0.755  Sum_probs=84.3

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCC
Q 034366            3 EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLET   82 (96)
Q Consensus         3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~   82 (96)
                      .++++|+.+|||++||++|+++|.+|+++|+.+  ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~   88 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGP   88 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETT
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECC
Confidence            378999999999999999999999999999977  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q 034366           83 LNFLIFKAA   91 (96)
Q Consensus        83 ~~illfkt~   91 (96)
                      ++||||||+
T Consensus        89 ~aiLlfKtg   97 (97)
T 4ds1_A           89 LAFLVFKTA   97 (97)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=2.6e-42  Score=221.24  Aligned_cols=87  Identities=46%  Similarity=0.826  Sum_probs=83.3

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCC
Q 034366            3 EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLET   82 (96)
Q Consensus         3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~   82 (96)
                      .++++|+.+|||++||++|+++|.+|+++|+.+  ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            478999999999999999999999999999977  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q 034366           83 LNFLIFKAA   91 (96)
Q Consensus        83 ~~illfkt~   91 (96)
                      ++||||||+
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999985

>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B

Probab=81.09  E-value=1  Score=28.82  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=29.6

Q ss_pred             CCCHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHHHHhhcccCCCceE
Q 034366           12 DMPVKMQVQAMASASQALDL--YDVVDSISIATHIKKEFDKIYGGGWQ   57 (96)
Q Consensus        12 dM~~~~q~~~~~~~~~a~~~--~~~~~~~~iA~~IK~~lD~~yg~~Wh   57 (96)
                      ||-.|.+..+-=++.-...+  .+.+.....|+.|.+.|-++|.+.|+
T Consensus         1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~   48 (120)
T 3e9v_A            1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF   48 (120)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46666555443344333333  33332457899999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	5e-33

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  107 bits (270), Expect = 5e-33
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 3  EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGS 62
          + KA IK  DM  +MQ  A+  A+QAL+ Y++     IA +IKKEFDK Y   W C+VG 
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIVGR 58

Query: 63 NFGCYFTHKHGTFIYFSLETLNFLIFKA 90
          NFG Y TH+   FIYF L  +  L+FK+
Sbjct: 59 NFGSYVTHETRHFIYFYLGQVAILLFKS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	80.34

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.6e-43  Score=218.73  Aligned_cols=87  Identities=48%  Similarity=0.826  Sum_probs=84.6

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCC
Q 034366            3 EGKASIKETDMPVKMQVQAMASASQALDLYDVVDSISIATHIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLET   82 (96)
Q Consensus         3 ~~~~~I~~~dM~~~~q~~~~~~~~~a~~~~~~~~~~~iA~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~   82 (96)
                      +.+++|+.+|||++||++|+++|.+|+++|+.+  +++|++||++||++|||+||||||++|||++||++++|+||++|+
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~~--~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~   78 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   78 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETT
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECC
Confidence            468999999999999999999999999999987  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q 034366           83 LNFLIFKAA   91 (96)
Q Consensus        83 ~~illfkt~   91 (96)
                      ++|||||||
T Consensus        79 ~~~Ll~Ktg   87 (87)
T d3e2ba1          79 VAILLFKSG   87 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999996

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=80.34  E-value=2.7  Score=25.78  Aligned_cols=48  Identities=8%  Similarity=0.273  Sum_probs=35.7

Q ss_pred             HHHHHhhcccCCCceEEEEeCccceeEEEccCcEEEEEeCCEEEEEEecCCC
Q 034366           42 THIKKEFDKIYGGGWQCVVGSNFGCYFTHKHGTFIYFSLETLNFLIFKAAIT   93 (96)
Q Consensus        42 ~~IK~~lD~~yg~~WhciVG~~Fgs~vt~~~~~~i~F~~~~~~illfkt~~~   93 (96)
                      +...+++++-|.+.||+|.=.   +.+. +++.|+-+.+++..++|+|..+.
T Consensus        21 ~~f~~E~~~if~~~W~~v~~~---~elp-~~Gd~~~~~i~~~~~vv~R~~dg   68 (150)
T d2bmoa1          21 ELFQHELKTIFARNWLFLTHD---SLIP-SPGDYVKAKMGVDEVIVSRQNDG   68 (150)
T ss_dssp             HHHHHHHHHTTTTSCEEEEEG---GGSC-STTEEEEEEETTEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHcCCeEeehH---HHcC-CCcceeeeeecCceeEEEecCCC
Confidence            455677788899999998644   2222 26777778999999999998764