Citrus Sinensis ID: 034380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSVK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCydalpepgkiivvesimpefpetdiisknisRLHITvsnlfpgakerTLEEFKSLAIGLLNSVK
Flexible Loop (DISEMBL)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSlaigllnsvk
Low Complexity Region (SEG)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSVK
Disordered region (IsUnstruct)
******KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGL*****
Disordered Region (DISOPRED)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSV*
Disordered Region (DISEMBL)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSVK
Disordered Region (DISPRO)
*F*EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.250	0.555	9e-25
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.245	0.533	2e-24
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.916	0.243	0.522	3e-24
Q41086	364	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.247	0.544	4e-24
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.246	0.544	4e-24
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.257	0.511	4e-24
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.247	0.533	5e-24
P59049	343	Quercetin 3-O-methyltrans	N/A	no	0.916	0.256	0.522	7e-24
Q42653	343	Quercetin 3-O-methyltrans	N/A	no	0.916	0.256	0.522	8e-24
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.937	0.246	0.533	1e-23

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  112 bits (279), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPKA  IFMKW+ HDW D+ CLK LKNCY+ALP  GK++V E I+PE P+T   +K
Sbjct: 248 MFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATK 307

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N   + I +    PG KERT +EF++LA G
Sbjct: 308 NAVHVDIVMLAHNPGGKERTEKEFEALAKG 337

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Capsicum annuum (taxid: 4072)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW DD C K LKNCYDALP  GK+IV E ++P +P+T + +K
Sbjct: 253 MFVSVPKGDAIFMKWICHDWSDDHCAKFLKNCYDALPNIGKVIVAECVLPVYPDTSLATK 312

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N+  +   +    PG KERT +EF++LA G
Sbjct: 313 NVIHIDCIMLAHNPGGKERTQKEFETLAKG 342

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 63/88 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW D+ C+K LKNCYDALP+ GK+I+ E ++PE P+T + +K
Sbjct: 250 MFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATK 309

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
           N+  + + +    PG KERT +EF+ LA
Sbjct: 310 NVVHIDVIMLAHNPGGKERTEKEFQGLA 337

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPKA  +FMKW+ HDW D+ CL  LKNCYDALPE GK+I+VE I+P  P+T + +K
Sbjct: 251 MFVSVPKADAVFMKWICHDWSDEHCLTFLKNCYDALPENGKVILVECILPVAPDTSLATK 310

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  + + +    PG KERT  EF+SLA G
Sbjct: 311 GVMHVDVIMLAHNPGGKERTDREFESLARG 340

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPKA  +FMKW+ HDW D  CLK LKNCYDALPE GK+I+VE I+P  P+T + +K
Sbjct: 252 MFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATK 311

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  + + +    PG KERT +EF+ LA G
Sbjct: 312 GVVHVDVIMLAHNPGGKERTEKEFEGLAKG 341

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 64/90 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW DD C K+LKNCY ALP+ GK+I+ E ++PE P+T + ++
Sbjct: 239 MFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQ 298

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N+  + + +    PG KERT +EF++LA G
Sbjct: 299 NVVHVDVVMLAHNPGGKERTEKEFEALAKG 328

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPKA  +FMKW+ HDW D+ CL++LKNCYDALPE GK+I+VE I+P  P+T + +K
Sbjct: 251 MFVSVPKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECILPVAPDTSLATK 310

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  +   +    PG KERT +EF+ LA G
Sbjct: 311 GVMHVDAIMLAHNPGGKERTDKEFEGLARG 340

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P59049|OMT1_CHRAE Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW D+ CLK+LKNCYDALP  GK+I+ E I+PE P++ + +K
Sbjct: 228 MFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLATK 287

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +  + +      PG KERT +EF++LA
Sbjct: 288 GVVHIDVITVAHNPGGKERTEKEFEALA 315

Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) > 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate.

Chrysosplenium americanum (taxid: 36749)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q42653|OMT2_CHRAE Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW D+ CLK+LKNCYDALP  GK+I+ E I+PE P++ + +K
Sbjct: 228 MFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNGKVILAECILPEVPDSSLATK 287

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +  + +      PG KERT +EF++LA
Sbjct: 288 GVVHIDVITVAHNPGGKERTEKEFEALA 315

Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) = 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate.

Chrysosplenium americanum (taxid: 36749)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VP A  +FMKW+ HDW D  CLK LKNCYDALPE GK+I+VE I+P  P+T + +K
Sbjct: 252 MFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATK 311

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  + + +    PG KERT +EF+ LA G
Sbjct: 312 GVVHVDVIMLAHNPGGKERTEKEFEGLANG 341

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
225453646	357	PREDICTED: caffeic acid 3-O-methyltransf	0.937	0.252	0.566	4e-24
97974184	364	Caffeic acid 3-O-methyltransferase [Ipom	0.937	0.247	0.555	2e-23
97974173	364	Caffeic acid 3-O-methyltransferase [Ipom	0.937	0.247	0.555	2e-23
147785075	382	hypothetical protein VITISV_028012 [Viti	0.937	0.235	0.577	2e-23
225453636	358	PREDICTED: quercetin 3-O-methyltransfera	0.937	0.251	0.577	2e-23
307090030	363	caffeic acid O-methyltransferase [Camell	0.937	0.247	0.544	3e-23
284437809	377	O-methyltransferase-like protein [Prunus	0.937	0.238	0.522	4e-23
30315948	359	RecName: Full=Caffeic acid 3-O-methyltra	0.937	0.250	0.555	4e-23
225453640	359	PREDICTED: quercetin 3-O-methyltransfera	0.937	0.250	0.566	6e-23
396589	364	catechol O-methyltransferase [Nicotiana	0.937	0.247	0.544	6e-23

>gi|225453646|ref|XP_002267543.1| PREDICTED: caffeic acid 3-O-methyltransferase 1 [Vitis vinifera]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VPK + IFMKW+LHDW D+ CLK+LKNCY+ALPE GK+IVVE ++P  PET  + K
Sbjct: 246 MFESVPKGEAIFMKWILHDWSDEHCLKLLKNCYNALPEHGKVIVVEGVLPAAPETSAVVK 305

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +S+  + +    PG KERT EEF  LA G
Sbjct: 306 AVSQTDLIMMAQNPGGKERTREEFLDLATG 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|97974184|dbj|BAE94403.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW D  CLK LKNCYDALPE GK+IV E  +PE P+T + +K
Sbjct: 253 MFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCYDALPENGKVIVAECNLPESPDTSLATK 312

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N+  + + +    PG KERT +EF++LA+G
Sbjct: 313 NVVHIDVIMLAHNPGGKERTEKEFEALAMG 342

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|97974173|dbj|BAE94400.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil] gi|97974195|dbj|BAE94406.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW D  CLK LKNCYDALPE GK+IV E  +PE P+T + +K
Sbjct: 253 MFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCYDALPENGKVIVAECNLPESPDTSLATK 312

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N+  + + +    PG KERT +EF++LA+G
Sbjct: 313 NVVHIDVIMLAHNPGGKERTEKEFEALAMG 342

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 61/90 (67%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+LHDW DD CLK+LKNCY ALPE GK+IVVE ++PE PE     K
Sbjct: 247 MFVSVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVK 306

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            I +  + +    PG KERT +EF  L IG
Sbjct: 307 AICQTDLIMLTQNPGGKERTRKEFLDLTIG 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 61/90 (67%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+LHDW DD CLK+LKNCY ALPE GK+IVVE ++PE PE     K
Sbjct: 247 MFVSVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVK 306

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            I +  + +    PG KERT +EF  L IG
Sbjct: 307 AICQTDLIMLTQNPGGKERTRKEFLDLTIG 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307090030|gb|ADN27527.1| caffeic acid O-methyltransferase [Camellia sinensis]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPK   IFMKW+ HDW DD CLK LKNCYDALP  GK+I+ E I+P  P+T + +K
Sbjct: 250 MFVSVPKGDAIFMKWICHDWSDDHCLKFLKNCYDALPHNGKVIIAECILPVAPDTKLATK 309

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N+  + + +    PG KERT +EF++LA G
Sbjct: 310 NVVHIDVIMLAHNPGGKERTQKEFEALAKG 339

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VP    IFMKW+LHDW D+ CLK+LKNCY A+P+ GK+IVVE+++P  PET   +K
Sbjct: 266 MFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATK 325

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
             S+L + +    PG KER+ +EF +LA G
Sbjct: 326 TTSQLDVVMMTQNPGGKERSEQEFMALATG 355

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30315948|sp|Q9FQY8.2|COMT1_CAPAN RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|1791352|gb|AAC17455.1| O-diphenol-O-methyltransferase [Capsicum annuum]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV VPKA  IFMKW+ HDW D+ CLK LKNCY+ALP  GK++V E I+PE P+T   +K
Sbjct: 248 MFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATK 307

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N   + I +    PG KERT +EF++LA G
Sbjct: 308 NAVHVDIVMLAHNPGGKERTEKEFEALAKG 337

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 61/90 (67%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VPK   IFMKW+LHDW DD CLK+LKNCY ALPE GK+I+VE ++PE PE     K
Sbjct: 248 MFESVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVK 307

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            I +  + +    PG KERT +EF  LAIG
Sbjct: 308 AICQTDLIMLTQNPGGKERTRKEFLDLAIG 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|396589|emb|CAA52461.1| catechol O-methyltransferase [Nicotiana tabacum]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VPKA  IFMKW+ HDW D+ CLK LKNCY+ALP  GK+I+ E I+PE P+T + +K
Sbjct: 252 MFASVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVIIAECILPEAPDTSLATK 311

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
           N   + I +    PG KERT +EF++LA G
Sbjct: 312 NTVHVDIVMLAHNPGGKERTEKEFEALAKG 341

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.916	0.242	0.5	7e-22
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.916	0.242	0.528	9e-22
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.916	0.25	0.477	1.5e-21
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.916	0.230	0.505	1.7e-21
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.916	0.230	0.505	1.2e-20
TAIR|locus:2015519	205	AT1G62900 [Arabidopsis thalian	0.885	0.414	0.510	1.5e-19
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.885	0.223	0.510	2.9e-19
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.895	0.233	0.472	3.4e-18
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.916	0.232	0.471	3.9e-18
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.937	0.25	0.444	1.1e-17

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MFV VPK   IFMKW+ HDW D+ C+K LKNCY++LPE GK+I+ E I+PE P++ + +K
Sbjct:   250 MFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTK 309

Query:    61 NISRLHITVSNLFPGAKERTLEEFKSLA 88
              +  +   +    PG KERT +EF++LA
Sbjct:   310 QVVHVDCIMLAHNPGGKERTEKEFEALA 337

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP-EFPETDIIS 59
             MF E+P+ + I MKW+LHDW D+ C++ILKNC  ALPE G+IIV+E I+P E  ETD+ +
Sbjct:   250 MFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPREVSETDLAT 309

Query:    60 KNISRLHITVSNLFPGAKERTLEEFKSLA 88
             KN     +T+ +L  G KERT +EF+ LA
Sbjct:   310 KNSLSADLTMMSLTSGGKERTKKEFEDLA 338

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 42/88 (47%), Positives = 61/88 (69%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MF   PK + IFMKW+LH W DD C+KIL NCY +LP  GK+IVV+ ++PEFP   ++ +
Sbjct:   239 MFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDR 298

Query:    61 NISRLHITVSNLFPGAKERTLEEFKSLA 88
             ++ +  + + N+ P  KERT +EF+ LA
Sbjct:   299 SLFQFELFMMNMNPSGKERTKKEFEILA 326

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 45/89 (50%), Positives = 64/89 (71%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPET-DIIS 59
             MFVEVPK   +FMKW+LHDWGD+ C+KILKNC+ +LPE GKII+VE + P+ P+  D+ S
Sbjct:   269 MFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLSS 328

Query:    60 KNISRLHITVSNLFPGAKERTLEEFKSLA 88
               +  + + +     G KER+L +F++LA
Sbjct:   329 NTVFAMDLLMLTQCSGGKERSLSQFENLA 357

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 45/89 (50%), Positives = 63/89 (70%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MF+EVPK   IFMKW+LHDWGD+ C+KILKNC+ +LPE GK+I+VE I P  P+ +  S 
Sbjct:   269 MFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSC 328

Query:    61 N-ISRLHITVSNLFPGAKERTLEEFKSLA 88
             N +  + + +     G KER+L +F++LA
Sbjct:   329 NTVLGMDLLMLTQCSGGKERSLSQFENLA 357

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015519 AT1G62900 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/92 (51%), Positives = 64/92 (69%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MF E+PK   IFMKW+LHDW D+ C+KILKN + +LPE GK+I+VE + PE P+ + IS 
Sbjct:    93 MFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISS 152

Query:    61 NI----SRLHITVSNLFPGAKERTLEEFKSLA 88
             NI      L + VS+   G KER+L +F++LA
Sbjct:   153 NIVFGMDMLMLAVSS---GGKERSLSQFETLA 181

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 47/92 (51%), Positives = 64/92 (69%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MF E+PK   IFMKW+LHDW D+ C+KILKN + +LPE GK+I+VE + PE P+ + IS 
Sbjct:   269 MFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEKGKVIIVEVVTPEEPKINDISS 328

Query:    61 NI----SRLHITVSNLFPGAKERTLEEFKSLA 88
             NI      L + VS+   G KER+L +F++LA
Sbjct:   329 NIVFGMDMLMLAVSS---GGKERSLSQFETLA 357

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 223 (83.6 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query:     1 MFVEVPKA-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
             MF  VP+    I MKW+LHDW D+ C ++LKNCYDALPE GK++VVE ++PE   +D  +
Sbjct:   256 MFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPE--SSDATA 313

Query:    60 KNISRLHITVSNLF--PGAKERTLEEFKSLA 88
             +     H+ +  L   PG KER   EF+ LA
Sbjct:   314 REQGVFHVDMIMLAHNPGGKERYEREFRELA 344

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.9e-18, P = 3.9e-18
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP-EFPETDIIS 59
             MF+++PK   IFMKW+LHDW D+ C+ ILKNC+ +L E GK+I+VE + P E    DI S
Sbjct:   266 MFIKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICS 325

Query:    60 KNISRLHITVSNLFPGAKERTLEEFKSLA 88
               +  + +T+     G KER L EF++LA
Sbjct:   326 NIVFGMDMTMLTQCSGGKERDLYEFENLA 354

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 218 (81.8 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 40/90 (44%), Positives = 57/90 (63%)

Query:     1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
             MF +VP    I MKW+LHDW D+ C  +LKNCYDALP  GK+++VE I+P  PE    ++
Sbjct:   249 MFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQ 308

Query:    61 NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
              +  + + +    PG +ER   EF++LA G
Sbjct:   309 GVFHVDMIMLAHNPGGRERYEREFEALAKG 338

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	8e-32
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	0.003

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  110 bits (278), Expect = 8e-32
 Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 4/89 (4%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
            F  VP+A  I +KWVLHDW D+ C+KILK CY+ALP  GK+IVVE ++PE P+ D+ ++
Sbjct: 153 FFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDPDDDLETE 212

Query: 61  -NISRLHITVSNLFPGAKERTLEEFKSLA 88
             +  L++ V  L  G KERT +E++ L 
Sbjct: 213 VLLLDLNMLV--LNGG-KERTEKEWRKLL 238

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 6   PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM--PEFPETDIIS 59
           P+A  +    +L+   + L   + K  +DA+   G++++++ ++  PE P  D +S
Sbjct: 214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS 269

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.95
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.95
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.7
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.51
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.01
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.77
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.65
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.65
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.64
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.62
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.6
PLN02336	475	phosphoethanolamine N-methyltransferase	98.46
PLN02490	340	MPBQ/MSBQ methyltransferase	98.4
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.39
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.38
PLN02336	475	phosphoethanolamine N-methyltransferase	98.37
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.35
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.31
PLN02244	340	tocopherol O-methyltransferase	98.3
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.28
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.26
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.24
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.16
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.13
PRK08317	241	hypothetical protein; Provisional	98.13
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.12
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.09
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.95
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.94
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.92
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.88
PRK11207	197	tellurite resistance protein TehB; Provisional	97.81
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.79
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.76
PRK06922	677	hypothetical protein; Provisional	97.73
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.71
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.66
KOG2361	264	consensus Predicted methyltransferase [General fun	97.62
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.58
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.54
PRK06202	232	hypothetical protein; Provisional	97.51
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.46
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.38
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.36
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.36
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.25
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.23
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.23
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.2
PRK12335	287	tellurite resistance protein TehB; Provisional	97.15
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.13
PLN03075	296	nicotianamine synthase; Provisional	97.13
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.11
TIGR03438	301	probable methyltransferase. This model represents	97.06
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.04
KOG4300	252	consensus Predicted methyltransferase [General fun	97.03
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.89
PRK04266	226	fibrillarin; Provisional	96.87
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.84
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	96.81
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.76
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.75
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.55
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.36
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.34
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.18
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.05
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.03
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.76
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.76
KOG2899	288	consensus Predicted methyltransferase [General fun	95.65
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.58
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.42
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.35
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.15
PRK05785	226	hypothetical protein; Provisional	94.49
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	94.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.12
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	94.05
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	93.95
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	93.95
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	93.51
COG4798	238	Predicted methyltransferase [General function pred	93.49
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.41
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.16
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.96
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	92.78
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	92.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	92.47
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	91.94
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	91.54
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	91.08
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	90.45
PRK14968	188	putative methyltransferase; Provisional	90.16
COG4301	321	Uncharacterized conserved protein [Function unknow	89.91
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	89.86
COG3315	297	O-Methyltransferase involved in polyketide biosynt	89.26
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	89.19
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	89.01
PTZ00146	293	fibrillarin; Provisional	88.81
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	88.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	88.46
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	88.46
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	87.64
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	87.17
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	84.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	84.06
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	83.01
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	82.93
cd01842	183	SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG	82.88
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	82.81
TIGR00438	188	rrmJ cell division protein FtsJ.	82.72
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	82.41
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.09
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	82.01
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	81.85
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	80.99
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	80.08
PRK07402	196	precorrin-6B methylase; Provisional	80.04

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.95  E-value=2.8e-28  Score=165.84  Aligned_cols=88  Identities=32%  Similarity=0.572  Sum_probs=77.8

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCC--CEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCcc
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEP--GKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~g--g~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      ||+++|.+|+|++++|||+|+|++|++||++++++|+||  |+|+|+|.++++.+..+........+|++||+.+ +|++
T Consensus       152 ~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~  230 (241)
T PF00891_consen  152 FFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKE  230 (241)
T ss_dssp             TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-
T ss_pred             HHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCC
Confidence            679999999999999999999999999999999999999  9999999999998876643323368999999988 7999


Q ss_pred             CCHHHHHHHHH
Q 034380           79 RTLEEFKSLAI   89 (96)
Q Consensus        79 Rt~~e~~~l~~   89 (96)
                      ||.+||++|++
T Consensus       231 rt~~e~~~ll~  241 (241)
T PF00891_consen  231 RTEEEWEALLK  241 (241)
T ss_dssp             EEHHHHHHHHH
T ss_pred             cCHHHHHHHhC
Confidence            99999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.95  E-value=1e-27  Score=169.36  Aligned_cols=96  Identities=46%  Similarity=0.727  Sum_probs=84.3

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC-CCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE-FPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      ||+.+|.+|+||++||||||+|++|++||+||+++|+|||+|+|+|.+.++ .......+.....+|+.|++.+.+|++|
T Consensus       230 mfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker  309 (342)
T KOG3178|consen  230 MFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER  309 (342)
T ss_pred             ccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence            687799999999999999999999999999999999999999999999986 3322222334678999999988789999


Q ss_pred             CHHHHHHHHHhhCcCCC
Q 034380           80 TLEEFKSLAIGLLNSVK   96 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v~   96 (96)
                      |.+||+.++.++||.|+
T Consensus       310 t~~e~q~l~~~~gF~~~  326 (342)
T KOG3178|consen  310 TLKEFQALLPEEGFPVC  326 (342)
T ss_pred             cHHHHHhcchhhcCcee
Confidence            99999999999999874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.70  E-value=1.5e-16  Score=111.64  Aligned_cols=92  Identities=12%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             CC-CCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MF-VEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F-~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      || +++|.+|+|++++++|+|+++++.++|++++++|+|||+++|+|.+.+++..+........+.++.|+..  -..-+
T Consensus       208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  285 (306)
T TIGR02716       208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS--VLGFK  285 (306)
T ss_pred             ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccc--cccCC
Confidence            45 4677789999999999999999999999999999999999999998877643321100111222222221  22345


Q ss_pred             CHHHHHHHHHhhCcC
Q 034380           80 TLEEFKSLAIGLLNS   94 (96)
Q Consensus        80 t~~e~~~l~~~AG~~   94 (96)
                      +.+||.+|+++|||+
T Consensus       286 ~~~e~~~ll~~aGf~  300 (306)
T TIGR02716       286 EQARYKEILESLGYK  300 (306)
T ss_pred             CHHHHHHHHHHcCCC
Confidence            589999999999997

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.51  E-value=1.2e-14  Score=97.96  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=63.9

Q ss_pred             CCCC-cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            3 VEVP-KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         3 ~~~P-~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      .|-+ ..|++|++|++-+++|++.+++|+||+++|+|+|.|+|-|++.....         ..+|     ..+++-.||.
T Consensus       117 ~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D-----~~DsSvTRs~  182 (218)
T PF05891_consen  117 TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD-----EEDSSVTRSD  182 (218)
T ss_dssp             ---TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE-----TTTTEEEEEH
T ss_pred             cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC-----CccCeeecCH
Confidence            3444 35999999999999999999999999999999999999999987542         1455     3568999999


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      +.|++||++||++|
T Consensus       183 ~~~~~lF~~AGl~~  196 (218)
T PF05891_consen  183 EHFRELFKQAGLRL  196 (218)
T ss_dssp             HHHHHHHHHCT-EE
T ss_pred             HHHHHHHHHcCCEE
Confidence            99999999999976

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00740 methyltransferase, putative

Probab=99.01  E-value=1.6e-09  Score=73.64  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc------------
Q 034380            5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL------------   72 (96)
Q Consensus         5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~------------   72 (96)
                      +|..|++++..++|.+++++..+++++++++|+|||.++|.|.+.+++....     ..+..+.+...            
T Consensus       120 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~  194 (239)
T TIGR00740       120 IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN-----HLLIDLHHQFKRANGYSELEISQ  194 (239)
T ss_pred             CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH-----HHHHHHHHHHHHHcCCCHHHHHH
Confidence            4557999999999999999999999999999999999999998876543211     11111111100            


Q ss_pred             -----CCCCccCCHHHHHHHHHhhCcC
Q 034380           73 -----FPGAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        73 -----~~~g~~Rt~~e~~~l~~~AG~~   94 (96)
                           ...-+..|.+|+.+++++|||.
T Consensus       195 ~~~~~~~~~~~~s~~~~~~~l~~aGF~  221 (239)
T TIGR00740       195 KRTALENVMRTDSIETHKARLKNVGFS  221 (239)
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHcCCc
Confidence                 0023467999999999999986

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.77  E-value=7.8e-08  Score=66.64  Aligned_cols=84  Identities=12%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      ++|.  .|+++...++|++++++..++|+++++.|+|||+++|.|...++.....  ......     +... .-...+.
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~~~~~~-----~~~~-~~~~~~~  183 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--EEFKAY-----IKKR-KYTLIPI  183 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--HHHHHH-----HHhc-CCCCCCH
Confidence            4554  4999999998889988889999999999999999999998766432211  011111     1111 1234588


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++|.+++++|||.+
T Consensus       184 ~~~~~~l~~aGF~~  197 (263)
T PTZ00098        184 QEYGDLIKSCNFQN  197 (263)
T ss_pred             HHHHHHHHHCCCCe
Confidence            99999999999975

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.65  E-value=1.8e-07  Score=64.81  Aligned_cols=84  Identities=20%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh--hh-cCC----------
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV--SN-LFP----------   74 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m--l~-~~~----------   74 (96)
                      .|++++..++|+++|.  .++|+++++.|+|||+++|.|...++....+..  ...++...+  +. ...          
T Consensus       146 fD~V~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~  221 (261)
T PLN02233        146 FDAITMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKS  221 (261)
T ss_pred             EeEEEEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHH
Confidence            3999999999999875  678999999999999999999876653211110  000111000  00 000          


Q ss_pred             -CCccCCHHHHHHHHHhhCcCC
Q 034380           75 -GAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        75 -~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                       -.+..|.+|+.++++++||++
T Consensus       222 s~~~f~s~~el~~ll~~aGF~~  243 (261)
T PLN02233        222 SINEYLTGEELEKLALEAGFSS  243 (261)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCE
Confidence             134579999999999999974

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.65  E-value=1.6e-07  Score=64.44  Aligned_cols=90  Identities=11%  Similarity=0.116  Sum_probs=60.4

Q ss_pred             CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-chh-h---hhhhhhhhh------hhhcC
Q 034380            5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPET-DII-S---KNISRLHIT------VSNLF   73 (96)
Q Consensus         5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-~~~-~---~~~~~~dl~------ml~~~   73 (96)
                      ++.+|++++..++|.+++++-.+++++++++|+|||.+++.|.+..++... +.. .   .+....+..      +....
T Consensus       123 ~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~  202 (247)
T PRK15451        123 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML  202 (247)
T ss_pred             CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            345699999999999999888999999999999999999999876654321 100 0   000000110      00000


Q ss_pred             C-CCccCCHHHHHHHHHhhCcC
Q 034380           74 P-GAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        74 ~-~g~~Rt~~e~~~l~~~AG~~   94 (96)
                      . .-..-|+++..+||++|||+
T Consensus       203 ~~~~~~~~~~~~~~~L~~aGF~  224 (247)
T PRK15451        203 ENVMLTDSVETHKARLHKAGFE  224 (247)
T ss_pred             HhhcccCCHHHHHHHHHHcCch
Confidence            0 12235899999999999985

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.64  E-value=3.2e-07  Score=63.37  Aligned_cols=79  Identities=13%  Similarity=0.064  Sum_probs=60.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|.+++.  .++++++.+.|+|||++++.+.+..+..  +.    ....++.+...+ .+..++.++|.++
T Consensus       147 fD~Vi~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~--~~----~~~~~~~~~~~~-~~~~~~~~e~~~~  217 (272)
T PRK11873        147 VDVIISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL--PE----EIRNDAELYAGC-VAGALQEEEYLAM  217 (272)
T ss_pred             eeEEEEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC--CH----HHHHhHHHHhcc-ccCCCCHHHHHHH
Confidence            3999999999988875  5789999999999999999998765432  11    112334444433 5678899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||.+
T Consensus       218 l~~aGf~~  225 (272)
T PRK11873        218 LAEAGFVD  225 (272)
T ss_pred             HHHCCCCc
Confidence            99999874

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.62  E-value=9.7e-08  Score=60.29  Aligned_cols=80  Identities=13%  Similarity=0.013  Sum_probs=59.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|+.+|  ..++|+++++.|+|||.++|.+...+...  +  ..+. .+........ +...+|.++|+++
T Consensus        79 fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~--~--~~~~-~~~~~~~~~~-~~~~~~~~~~~~l  150 (161)
T PF13489_consen   79 FDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPS--P--RSFL-KWRYDRPYGG-HVHFFSPDELRQL  150 (161)
T ss_dssp             EEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHH--H--HHHH-HCCGTCHHTT-TTEEBBHHHHHHH
T ss_pred             hhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchh--h--hHHH-hcCCcCccCc-eeccCCHHHHHHH
Confidence            499999999999996  68999999999999999999998765311  0  0011 1111111112 6789999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++|+++
T Consensus       151 l~~~G~~i  158 (161)
T PF13489_consen  151 LEQAGFEI  158 (161)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCEE
Confidence            99999975

...

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.60  E-value=2.2e-07  Score=59.95  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh-----h----------hhhhc
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH-----I----------TVSNL   72 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d-----l----------~ml~~   72 (96)
                      .|++++..++|+++|.  .+.|+++++.|+|||+++|.|...++..-....  ......     .          .-+..
T Consensus        45 fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~  120 (160)
T PLN02232         45 FDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKY  120 (160)
T ss_pred             eeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHH
Confidence            3999999999999875  688999999999999999999876543211000  000000     0          00000


Q ss_pred             CCCCccCCHHHHHHHHHhhCcC
Q 034380           73 FPGAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        73 ~~~g~~Rt~~e~~~l~~~AG~~   94 (96)
                      + -..-.+.+|+.++++++||.
T Consensus       121 s-i~~f~~~~el~~ll~~aGF~  141 (160)
T PLN02232        121 S-INGYLTGEELETLALEAGFS  141 (160)
T ss_pred             H-HHHCcCHHHHHHHHHHcCCC
Confidence            0 12346899999999999996

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.46  E-value=1.5e-06  Score=64.36  Aligned_cols=81  Identities=9%  Similarity=0.113  Sum_probs=60.6

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      ++|.  .|+++...++++++|.  .++++++++.|+|||+++|.|....+....+   .+...+     ... +...++.
T Consensus       327 ~~~~~~fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~~-----~~~-g~~~~~~  395 (475)
T PLN02336        327 TYPDNSFDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---EFAEYI-----KQR-GYDLHDV  395 (475)
T ss_pred             CCCCCCEEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---HHHHHH-----Hhc-CCCCCCH
Confidence            3554  4999999999999875  5889999999999999999998765432221   111111     112 4568899


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++|.+++++|||.+
T Consensus       396 ~~~~~~l~~aGF~~  409 (475)
T PLN02336        396 QAYGQMLKDAGFDD  409 (475)
T ss_pred             HHHHHHHHHCCCee
Confidence            99999999999985

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.40  E-value=1.2e-06  Score=63.01  Aligned_cols=73  Identities=18%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|.|+|.+  ++|+++++.|+|||+++|.+.+.++...    .+  ...+..       ....+.+|+.++
T Consensus       179 FDvVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~----~r--~~~~~~-------~~~~t~eEl~~l  243 (340)
T PLN02490        179 ADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWL----SR--FFADVW-------MLFPKEEEYIEW  243 (340)
T ss_pred             eeEEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhH----HH--Hhhhhh-------ccCCCHHHHHHH
Confidence            49999999999999874  6899999999999999998765543210    11  111211       123589999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||+.
T Consensus       244 L~~aGF~~  251 (340)
T PLN02490        244 FTKAGFKD  251 (340)
T ss_pred             HHHCCCeE
Confidence            99999963

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.39  E-value=2e-07  Score=63.74  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             CCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh----------------
Q 034380            5 VPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH----------------   66 (96)
Q Consensus         5 ~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d----------------   66 (96)
                      +|.  .|+++++..+|+.+|.  .+.|+++++.|+|||+++|+|...++.+  .....+..++.                
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~--~~~~~~~~y~~~ilP~~g~l~~~~~~~  187 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP--LLRALYKFYFKYILPLIGRLLSGDREA  187 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH--HHHHHHHH-------------------
T ss_pred             CCCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc--hhhceeeeeeccccccccccccccccc
Confidence            454  3999999999999985  5689999999999999999999888652  11000001111                


Q ss_pred             hhhhhcCCCCccCCHHHHHHHHHhhCcC
Q 034380           67 ITVSNLFPGAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        67 l~ml~~~~~g~~Rt~~e~~~l~~~AG~~   94 (96)
                      ...+..+ --+-.+.+|+.+++++|||+
T Consensus       188 Y~yL~~S-i~~f~~~~~~~~~l~~~Gf~  214 (233)
T PF01209_consen  188 YRYLPES-IRRFPSPEELKELLEEAGFK  214 (233)
T ss_dssp             ----------------------------
T ss_pred             ccccccc-cccccccccccccccccccc
Confidence            0111111 12345788999999999997

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.38  E-value=2.4e-06  Score=60.98  Aligned_cols=78  Identities=15%  Similarity=0.026  Sum_probs=55.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch--hhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDI--ISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~--~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|+++...++|+..|.  ..+|+++++.|+|||++++-..+.+.+.....  ...+..+..        .=..+|.+++.
T Consensus       190 FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~--------~~~lps~~~l~  259 (322)
T PRK15068        190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRN--------VYFIPSVPALK  259 (322)
T ss_pred             cCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCcc--------ceeCCCHHHHH
Confidence            4999999999998875  67899999999999999887766665433210  111111000        01246899999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      +|+++|||++
T Consensus       260 ~~L~~aGF~~  269 (322)
T PRK15068        260 NWLERAGFKD  269 (322)
T ss_pred             HHHHHcCCce
Confidence            9999999974

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.37  E-value=1.9e-06  Score=63.87  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=59.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|.+++++..++|+++++.|+|||++++.|.......+.      ..        .......|+..+|.++
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~  169 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KR--------KNNPTHYREPRFYTKV  169 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cc--------cCCCCeecChHHHHHH
Confidence            499999999999999999999999999999999999999876543211      01        0124556889999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |.++|++.
T Consensus       170 f~~~~~~~  177 (475)
T PLN02336        170 FKECHTRD  177 (475)
T ss_pred             HHHheecc
Confidence            99999864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.35  E-value=4.1e-06  Score=56.37  Aligned_cols=85  Identities=14%  Similarity=0.047  Sum_probs=72.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++..|++|--+-+.+..+++.+.+.|++||.++|+-++.-+..-.+.   -...||-.+-.-.+...-|..++..++
T Consensus       103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~l  179 (204)
T PF06080_consen  103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEAL  179 (204)
T ss_pred             cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHH
Confidence            49999999999999999999999999999999999999998776543221   134677777665558999999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      .+++|++.
T Consensus       180 A~~~GL~l  187 (204)
T PF06080_consen  180 AAAHGLEL  187 (204)
T ss_pred             HHHCCCcc
Confidence            99999875

The function of this family is unknown.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.31  E-value=3.9e-06  Score=56.23  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh----cCCC--------
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN----LFPG--------   75 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~----~~~~--------   75 (96)
                      .|++++..++|++++.  ..+|+++.+.|+|||+++++|...++...   .......+...++.    ...+        
T Consensus       122 ~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (239)
T PRK00216        122 FDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYL  196 (239)
T ss_pred             ccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence            4999999999999874  67899999999999999999987664321   00000111110100    0001        


Q ss_pred             ----CccCCHHHHHHHHHhhCcCC
Q 034380           76 ----AKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        76 ----g~~Rt~~e~~~l~~~AG~~v   95 (96)
                          ...++.++|.+++++|||.+
T Consensus       197 ~~~~~~~~~~~~~~~~l~~aGf~~  220 (239)
T PRK00216        197 AESIRAFPDQEELAAMLEEAGFER  220 (239)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCCce
Confidence                23468899999999999975

>PLN02244 tocopherol O-methyltransferase

Probab=98.30  E-value=7.8e-06  Score=58.59  Aligned_cols=85  Identities=13%  Similarity=0.072  Sum_probs=54.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC--CchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE--TDIISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~--~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|+++...++|+++|.  .++++++++.|+|||+++|.+........  ..........++-...... .-.-.|.++|.
T Consensus       187 FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~  263 (340)
T PLN02244        187 FDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYV  263 (340)
T ss_pred             ccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHH
Confidence            3999999999999885  68899999999999999999865432211  0000000111111000000 11235899999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      +++++|||.+
T Consensus       264 ~~l~~aGf~~  273 (340)
T PLN02244        264 KLAESLGLQD  273 (340)
T ss_pred             HHHHHCCCCe
Confidence            9999999974

>TIGR00452 methyltransferase, putative

Probab=98.28  E-value=4.5e-06  Score=59.49  Aligned_cols=78  Identities=14%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD--IISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|+++...++|++++.  ...|++++++|+|||++++.+.+.+.+....  +...+..+.+.        =.-.|.+++.
T Consensus       189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv--------~flpS~~~L~  258 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV--------YFIPSVSALK  258 (314)
T ss_pred             cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc--------ccCCCHHHHH
Confidence            4999999999999876  6789999999999999999888776543221  01111111110        1235899999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      .|+++|||+.
T Consensus       259 ~~L~~aGF~~  268 (314)
T TIGR00452       259 NWLEKVGFEN  268 (314)
T ss_pred             HHHHHCCCeE
Confidence            9999999974

Known examples to date are restricted to the proteobacteria.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.26  E-value=6.8e-06  Score=54.49  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=55.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh---hhcCC-------C--
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV---SNLFP-------G--   75 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m---l~~~~-------~--   75 (96)
                      .|++++...+|+.++  ...+++++++.|+|||++++.+...+...  +.    ...++..+   +....       +  
T Consensus       107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (223)
T TIGR01934       107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANA--LL----KKFYKFYLKNVLPSIGGLISKNAEAY  178 (223)
T ss_pred             EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCch--hh----HHHHHHHHHHhhhhhhhhhcCCchhh
Confidence            499999999999887  46889999999999999999998655432  11    11111111   10000       0  


Q ss_pred             -------CccCCHHHHHHHHHhhCcCC
Q 034380           76 -------AKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        76 -------g~~Rt~~e~~~l~~~AG~~v   95 (96)
                             ....+.++|..+++++||.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~  205 (223)
T TIGR01934       179 TYLPESIRAFPSQEELAAMLKEAGFEE  205 (223)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence                   12347899999999999974

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.24  E-value=3.7e-06  Score=57.83  Aligned_cols=48  Identities=27%  Similarity=0.443  Sum_probs=41.8

Q ss_pred             CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380            4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP   53 (96)
Q Consensus         4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~   53 (96)
                      |+|..  |++.++..||+.+|-  .+.|+.+++.|+|||+++|+|...++.+
T Consensus       114 Pf~D~sFD~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~  163 (238)
T COG2226         114 PFPDNSFDAVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNP  163 (238)
T ss_pred             CCCCCccCEEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCch
Confidence            45543  999999999999975  7789999999999999999999887654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.16  E-value=1.2e-05  Score=55.20  Aligned_cols=86  Identities=14%  Similarity=0.020  Sum_probs=53.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh--hhhhhhh--hhcCCCCccCCHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNI--SRLHITV--SNLFPGAKERTLEE   83 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~--~~~dl~m--l~~~~~g~~Rt~~e   83 (96)
                      .|+++...++|..+|.  .++++++++.|+|||++++......+...........  ..+.-.+  .....+....+.++
T Consensus        90 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  167 (255)
T PRK14103         90 TDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG  167 (255)
T ss_pred             ceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence            5999999999999875  6789999999999999988632111110000000000  0011100  00011234579999


Q ss_pred             HHHHHHhhCcCC
Q 034380           84 FKSLAIGLLNSV   95 (96)
Q Consensus        84 ~~~l~~~AG~~v   95 (96)
                      |.+++++|||.|
T Consensus       168 ~~~~l~~aGf~v  179 (255)
T PRK14103        168 YAELLTDAGCKV  179 (255)
T ss_pred             HHHHHHhCCCeE
Confidence            999999999964

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.13  E-value=1e-05  Score=54.41  Aligned_cols=83  Identities=12%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhh----------------hhhh
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHI----------------TVSN   71 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl----------------~ml~   71 (96)
                      .|++++...+|++++.  .++|+++.+.|+|||++++.|...++..  ........++..                ..+.
T Consensus       115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  190 (231)
T TIGR02752       115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ  190 (231)
T ss_pred             ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence            3999999999999876  5789999999999999999987554321  100000000110                0011


Q ss_pred             cCCCCccCCHHHHHHHHHhhCcCC
Q 034380           72 LFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        72 ~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      .. .....|.+|+++++++|||.+
T Consensus       191 ~~-~~~~~~~~~l~~~l~~aGf~~  213 (231)
T TIGR02752       191 ES-TRDFPGMDELAEMFQEAGFKD  213 (231)
T ss_pred             HH-HHHcCCHHHHHHHHHHcCCCe
Confidence            11 223467899999999999975

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK08317 hypothetical protein; Provisional

Probab=98.13  E-value=2.1e-05  Score=52.41  Aligned_cols=83  Identities=12%  Similarity=-0.024  Sum_probs=54.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-CchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE-TDIISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|++++.+++|++++.  ..+++++.+.|+|||.+++.+...+.... ............  .+... ....++..+|.+
T Consensus        88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~  162 (241)
T PRK08317         88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDH-FADPWLGRRLPG  162 (241)
T ss_pred             ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH--HHHhc-CCCCcHHHHHHH
Confidence            4999999999999985  66899999999999999999854321110 000000111111  11111 344566789999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      +++++||.+
T Consensus       163 ~l~~aGf~~  171 (241)
T PRK08317        163 LFREAGLTD  171 (241)
T ss_pred             HHHHcCCCc
Confidence            999999964

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.12  E-value=1.6e-05  Score=53.28  Aligned_cols=72  Identities=18%  Similarity=0.136  Sum_probs=53.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|++++.  ..+++++++.|+|||++++.+.+.+.. ...     ..  +     .. ..-..|..+|.++
T Consensus        68 fD~I~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~-----~~--~-----~~-~~~~~s~~~~~~~  131 (224)
T smart00828       68 YDLVFGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLL-SAI-----EH--E-----ET-TSYLVTREEWAEL  131 (224)
T ss_pred             CCEeehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccC-ccc-----cc--c-----cc-ccccCCHHHHHHH
Confidence            4999999999999874  689999999999999999998754321 100     00  0     00 1224578999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       132 l~~~Gf~~  139 (224)
T smart00828      132 LARNNLRV  139 (224)
T ss_pred             HHHCCCeE
Confidence            99999976

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.09  E-value=8.2e-06  Score=58.35  Aligned_cols=83  Identities=10%  Similarity=-0.122  Sum_probs=54.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcC---CCCccCCHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLF---PGAKERTLEEF   84 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~---~~g~~Rt~~e~   84 (96)
                      .|++++..++|+++|.  ..+|+.+++.|+|||.++|........  ..........+ +.-+...   .-.+..|.+|+
T Consensus       199 FD~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~i~~~ey-i~~~lp~gth~~~~f~tp~eL  273 (322)
T PLN02396        199 FDAVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR--AYASTIVGAEY-ILRWLPKGTHQWSSFVTPEEL  273 (322)
T ss_pred             CCEEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHhhhhHHH-HHhcCCCCCcCccCCCCHHHH
Confidence            4999999999999987  578999999999999999987532210  00000000000 0001111   01246799999


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      .++++++|+.+
T Consensus       274 ~~lL~~aGf~i  284 (322)
T PLN02396        274 SMILQRASVDV  284 (322)
T ss_pred             HHHHHHcCCeE
Confidence            99999999976

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.95  E-value=7.7e-06  Score=47.01  Aligned_cols=39  Identities=23%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      |+|.  .|++++..++|.+  ++..++++++++.|+|||+++|
T Consensus        55 ~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   55 PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence            4454  3999999999999  5578999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.94  E-value=1.7e-05  Score=54.44  Aligned_cols=84  Identities=11%  Similarity=0.009  Sum_probs=53.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchh-hhhhhhhhhhhh-----hcCCCCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDII-SKNISRLHITVS-----NLFPGAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~-~~~~~~~dl~ml-----~~~~~g~~Rt~   81 (96)
                      .|++++..++|.+++.  .++|+++.+.|+|||+++|.........-.... ..+... .-.+.     ..+ -....+.
T Consensus       113 fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-p~~~~~~  188 (255)
T PRK11036        113 VDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYV-QAGMPKRKKRTLS-PDYPLDP  188 (255)
T ss_pred             CCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHH-HhcCccccccCCC-CCCCCCH
Confidence            4999999999999876  478999999999999999886543211000000 000000 00000     001 1234678


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      +++.++++++||++
T Consensus       189 ~~l~~~l~~aGf~~  202 (255)
T PRK11036        189 EQVYQWLEEAGWQI  202 (255)
T ss_pred             HHHHHHHHHCCCeE
Confidence            99999999999986

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.92  E-value=8.9e-05  Score=51.74  Aligned_cols=89  Identities=15%  Similarity=0.013  Sum_probs=60.3

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-Cchhhh-------------hhhhhhh
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE-TDIISK-------------NISRLHI   67 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-~~~~~~-------------~~~~~dl   67 (96)
                      |+|.  .|.|.+..-+.+|+|-  .+.|+.+++.|+||||+.|.|.---++.. ...+.+             +...-..
T Consensus       172 pFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sY  249 (296)
T KOG1540|consen  172 PFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSY  249 (296)
T ss_pred             CCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhh
Confidence            4555  4999999999999995  78899999999999999999985444210 000000             0011112


Q ss_pred             hhhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380           68 TVSNLFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        68 ~ml~~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ..|... =-+.-+.+|+..+.++|||.+
T Consensus       250 qYLveS-I~rfp~qe~f~~miedaGF~~  276 (296)
T KOG1540|consen  250 QYLVES-IRRFPPQEEFASMIEDAGFSS  276 (296)
T ss_pred             hhHHhh-hhcCCCHHHHHHHHHHcCCcc
Confidence            223322 245668899999999999864

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.88  E-value=2.4e-05  Score=54.39  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=36.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++++++|.|++++..+++++++++|+|||.++|-.
T Consensus       204 fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      204 FDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             CCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            499999999999999999999999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.81  E-value=7.7e-05  Score=49.56  Aligned_cols=44  Identities=14%  Similarity=0.058  Sum_probs=39.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|+++...++|.+++++..+++++++++|+|||++++++.+..+
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~  139 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA  139 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence            49999999999999999999999999999999998887765443

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.79  E-value=8.7e-05  Score=50.02  Aligned_cols=84  Identities=8%  Similarity=-0.034  Sum_probs=52.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc--CCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL--FPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~--~~~g~~Rt~~e~~   85 (96)
                      .|++++.+++++.++.  ..+|+++.+.|+|||++++....  ..............+-......  ...++..+.++|.
T Consensus       115 fD~Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (233)
T PRK05134        115 FDVVTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLN--RNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA  190 (233)
T ss_pred             ccEEEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecC--CChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence            4999999999999875  57899999999999999876532  1110000000000000001100  0123455889999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      ++++++|+.+
T Consensus       191 ~~l~~~Gf~~  200 (233)
T PRK05134        191 AWLRQAGLEV  200 (233)
T ss_pred             HHHHHCCCeE
Confidence            9999999974

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.76  E-value=9.4e-05  Score=49.07  Aligned_cols=43  Identities=16%  Similarity=0.094  Sum_probs=38.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|+++...++|.+++++..++++++++.|+|||+++|++....
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~  137 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDT  137 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence            5999999999999998899999999999999999888876543

Part of a tellurite-reducing operon tehA and tehB

>PRK06922 hypothetical protein; Provisional

Probab=97.73  E-value=6.4e-05  Score=58.22  Aligned_cols=46  Identities=30%  Similarity=0.489  Sum_probs=40.4

Q ss_pred             ceEeEecccccCC-----------ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380            8 AQTIFMKWVLHDW-----------GDDLCLKILKNCYDALPEPGKIIVVESIMPEFP   53 (96)
Q Consensus         8 ~D~~ll~~vlh~~-----------~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~   53 (96)
                      .|+++++.++|+|           ++++..++|++++++|+|||+++|.|.+.++++
T Consensus       488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~  544 (677)
T PRK06922        488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDK  544 (677)
T ss_pred             EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCch
Confidence            4999999999986           467889999999999999999999998766543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.71  E-value=0.00011  Score=49.16  Aligned_cols=80  Identities=14%  Similarity=0.034  Sum_probs=52.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh-cCC-----CCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN-LFP-----GAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~-~~~-----~g~~Rt~   81 (96)
                      .|++++.+++|...+.  ..+|+++++.|+|||.+++.....+.  ...    .....+-.+.. ..+     .....+.
T Consensus       113 ~D~i~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (224)
T TIGR01983       113 FDVVTCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTP--KSY----LLAIVGAEYILRIVPKGTHDWEKFIKP  184 (224)
T ss_pred             ccEEEehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCc--hHH----HHHHHhhhhhhhcCCCCcCChhhcCCH
Confidence            5999999999999876  47899999999999999887642111  010    01111111110 000     1234578


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      .+|.++++++|+++
T Consensus       185 ~~l~~~l~~~G~~i  198 (224)
T TIGR01983       185 SELTSWLESAGLRV  198 (224)
T ss_pred             HHHHHHHHHcCCee
Confidence            89999999999986

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.66  E-value=7.1e-05  Score=52.83  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=35.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      -|++++++++..++++.-.+++++++++|+|||.+++=-
T Consensus       224 fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        224 FDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             cceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            399999999999999999999999999999999876643

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.62  E-value=0.00017  Score=49.88  Aligned_cols=85  Identities=15%  Similarity=0.039  Sum_probs=62.8

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc--cCCHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK--ERTLEEFKS   86 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~--~Rt~~e~~~   86 (96)
                      |.+.+--+|.-.+.++-.+.++++++.|+|||.|+.-|+-..+-.+--  ......++-+..+-.+|.+  --+.++.++
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVRgDGT~~YfF~~eeL~~  223 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVRGDGTRAYFFTEEELDE  223 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEccCCceeeeccHHHHHH
Confidence            999999999999999999999999999999999999998666532110  0012234444444222222  348999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      ||.+|||..
T Consensus       224 ~f~~agf~~  232 (264)
T KOG2361|consen  224 LFTKAGFEE  232 (264)
T ss_pred             HHHhcccch
Confidence            999999864

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.58  E-value=8e-05  Score=52.06  Aligned_cols=77  Identities=17%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             EeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380           10 TIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus        10 ~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      ++++..+||..+| ++...+++..+++|+||+.|+|.-...+..+  ...   ....++.--... .+..||.+|..++|
T Consensus       153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~---~~~~~~~~~~~~-~~~~Rs~~ei~~~f  226 (267)
T PF04672_consen  153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERA---EALEAVYAQAGS-PGRPRSREEIAAFF  226 (267)
T ss_dssp             EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHH---HHHHHHHHHCCS-----B-HHHHHHCC
T ss_pred             eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHH---HHHHHHHHcCCC-CceecCHHHHHHHc
Confidence            5788899999988 8899999999999999999999988765332  111   112222222333 78999999999998


Q ss_pred             HhhCcC
Q 034380           89 IGLLNS   94 (96)
Q Consensus        89 ~~AG~~   94 (96)
                      .  ||.
T Consensus       227 ~--g~e  230 (267)
T PF04672_consen  227 D--GLE  230 (267)
T ss_dssp             T--TSE
T ss_pred             C--CCc
Confidence            7  554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.54  E-value=6.1e-05  Score=50.44  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=34.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|+++++|||-.++++.-.+++++++++|+|||-|++-.
T Consensus       137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            399999999999999999999999999999999998854

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK06202 hypothetical protein; Provisional

Probab=97.51  E-value=0.00034  Score=47.32  Aligned_cols=79  Identities=14%  Similarity=0.007  Sum_probs=52.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh------cCC----CCc
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN------LFP----GAK   77 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~------~~~----~g~   77 (96)
                      .|++++..++|+++|++..++|+++++.++  |.++|.|...+..   .    +..........      ..+    --+
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~----~~~~~~~~~~~~~~~~~~~d~~~s~~~  200 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---A----YALFWAGTRLLSRSSFVHTDGLLSVRR  200 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---H----HHHHHHHHHHhccCceeeccchHHHHh
Confidence            499999999999999988999999999887  5666665544321   0    00111111000      000    125


Q ss_pred             cCCHHHHHHHHHhhCcCCC
Q 034380           78 ERTLEEFKSLAIGLLNSVK   96 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v~   96 (96)
                      .+|.+|+.+++++ ||+++
T Consensus       201 ~~~~~el~~ll~~-Gf~~~  218 (232)
T PRK06202        201 SYTPAELAALAPQ-GWRVE  218 (232)
T ss_pred             hcCHHHHHHHhhC-CCeEE
Confidence            6799999999999 99863

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.46  E-value=6.5e-05  Score=47.62  Aligned_cols=79  Identities=20%  Similarity=0.121  Sum_probs=52.7

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhh-hhhhhhhhhcCCCCccCCHHHHH
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNI-SRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~-~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      +.|+++...++|++++.  ..+++++.+.|+++|.+++.+....+.-......... ....+.+..    ... +.++|.
T Consensus        73 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~  145 (152)
T PF13847_consen   73 KFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIY----IGN-DKEEWK  145 (152)
T ss_dssp             TEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC--------CCCGHH
T ss_pred             CeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhh----ccc-CHHHHH
Confidence            45999999999999987  5789999999999999999998832211111001011 111111111    222 889999


Q ss_pred             HHHHhhC
Q 034380           86 SLAIGLL   92 (96)
Q Consensus        86 ~l~~~AG   92 (96)
                      .++++||
T Consensus       146 ~~~~~ag  152 (152)
T PF13847_consen  146 YILEEAG  152 (152)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhcC
Confidence            9999998

...

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.38  E-value=0.00014  Score=42.76  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEE
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKI   42 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l   42 (96)
                      +.|++++..++|++++  -.++|+++++.|+|||++
T Consensus        66 ~fD~V~~~~vl~~l~~--~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   66 SFDLVVASNVLHHLED--IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --SEEEEE-TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred             ccceehhhhhHhhhhh--HHHHHHHHHHHcCCCCCC
Confidence            3599999999999944  569999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.36  E-value=0.00044  Score=48.44  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-hhhhhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS-RLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~-~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|.++--.++.+.+++.-.+++++|.+.|+|||+++|...+..+.....    ... ..+...--..++|.-.|..++..
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~----~~~~~~~~i~kyiFPgg~lps~~~~~~  203 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA----ERRSSSDFIRKYIFPGGYLPSLSEILR  203 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH----CTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh----hcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence            4888888889999998899999999999999999999888776542110    000 00111112245899999999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      .++++||+|
T Consensus       204 ~~~~~~l~v  212 (273)
T PF02353_consen  204 AAEDAGLEV  212 (273)
T ss_dssp             HHHHTT-EE
T ss_pred             HHhcCCEEE
Confidence            999999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.36  E-value=0.00038  Score=41.44  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             cceEeEecc-cccCCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            7 KAQTIFMKW-VLHDWGD-DLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         7 ~~D~~ll~~-vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      +.|++++.. .+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        70 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   70 PFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            369999999 6775554 688999999999999999999865

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.25  E-value=0.0025  Score=43.58  Aligned_cols=83  Identities=14%  Similarity=0.047  Sum_probs=50.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-----hhhhhhhhcC-CCCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS-----RLHITVSNLF-PGAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~-----~~dl~ml~~~-~~g~~Rt~   81 (96)
                      .|+++...++|..+|.  .+++++++++|+|||.+++.   .++....+.......     -+...+.... ..+..-+.
T Consensus        94 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  168 (258)
T PRK01683         94 LDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ---MPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPP  168 (258)
T ss_pred             ccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE---CCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCH
Confidence            5999999999988775  68899999999999999885   222221111000000     0111111000 01234567


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      .++.+++.++|+.|
T Consensus       169 ~~~~~~l~~~g~~v  182 (258)
T PRK01683        169 HAYYDALAPAACRV  182 (258)
T ss_pred             HHHHHHHHhCCCce
Confidence            78999999999766

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.23  E-value=0.00033  Score=47.06  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=35.7

Q ss_pred             ceEeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++++-|++.+++ ++-.+.++++.++|+|||.+|+...
T Consensus       107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            399999999999987 6788899999999999999999775

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.23  E-value=0.00075  Score=47.28  Aligned_cols=42  Identities=21%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             CCcc-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            5 VPKA-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         5 ~P~~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .++. |+++++|||-.++.+.=.+++++.+++|+|||.|+|=.
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            4554 99999999999999999999999999999999998854

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.20  E-value=0.0028  Score=42.19  Aligned_cols=72  Identities=15%  Similarity=0.040  Sum_probs=50.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|..+|.  .++|+++++.|+|||.+++.+...+...      .....+.     .. +...++.++|.++
T Consensus        99 fD~vi~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~------~~~~~~~-----~~-~~~~~~~~~~~~~  164 (240)
T TIGR02072        99 FDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLH------ELRQSFG-----QH-GLRYLSLDELKAL  164 (240)
T ss_pred             eeEEEEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHH------HHHHHHH-----Hh-ccCCCCHHHHHHH
Confidence            4999999999988764  6789999999999999998865332210      0011111     01 4566788888888


Q ss_pred             HHhhCcC
Q 034380           88 AIGLLNS   94 (96)
Q Consensus        88 ~~~AG~~   94 (96)
                      +.++ +.
T Consensus       165 l~~~-f~  170 (240)
T TIGR02072       165 LKNS-FE  170 (240)
T ss_pred             HHHh-cC
Confidence            8876 53

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.15  E-value=0.0011  Score=46.44  Aligned_cols=43  Identities=19%  Similarity=0.109  Sum_probs=38.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|+++...++|..++++...+++++.+.|+|||.+++++.+..
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~  227 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT  227 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            4999999999999999999999999999999999888765543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.13  E-value=0.003  Score=42.20  Aligned_cols=77  Identities=12%  Similarity=-0.032  Sum_probs=48.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh-hh----cCCCCccCCHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV-SN----LFPGAKERTLE   82 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m-l~----~~~~g~~Rt~~   82 (96)
                      .|++++..++|+|++++..++++++.+.++ |+.++..   .+..  .. .    ..+.... ..    ........+.+
T Consensus       128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~---~~~~--~~-~----~~~~~l~~~~~~~~~~~~~~~~~~~  196 (230)
T PRK07580        128 FDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTF---APYT--PL-L----ALLHWIGGLFPGPSRTTRIYPHREK  196 (230)
T ss_pred             cCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEE---CCcc--HH-H----HHHHHhccccCCccCCCCccccCHH
Confidence            499999999999999999999999988654 3333322   1211  11 0    0111100 00    11134556889


Q ss_pred             HHHHHHHhhCcCC
Q 034380           83 EFKSLAIGLLNSV   95 (96)
Q Consensus        83 e~~~l~~~AG~~v   95 (96)
                      +|.++++++||++
T Consensus       197 ~~~~~l~~~Gf~~  209 (230)
T PRK07580        197 GIRRALAAAGFKV  209 (230)
T ss_pred             HHHHHHHHCCCce
Confidence            9999999999986

>PLN03075 nicotianamine synthase; Provisional

Probab=97.13  E-value=0.00063  Score=48.28  Aligned_cols=38  Identities=8%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++. ++|+|+.++=.++|+++++.|+|||.+++--
T Consensus       196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            4999999 9999988888999999999999999998754

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.11  E-value=0.0043  Score=44.12  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=54.6

Q ss_pred             CcceEeEecccccCCChHHHHH-HHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCC-----ccC
Q 034380            6 PKAQTIFMKWVLHDWGDDLCLK-ILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGA-----KER   79 (96)
Q Consensus         6 P~~D~~ll~~vlh~~~d~~~~~-lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g-----~~R   79 (96)
                      |..++.+.+-+.-.|+|.+.++ .|+.+++++.|||.+|---     .+..|.-+..+..     +....+|     +.|
T Consensus       208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg-----QPwHPQle~IAr~-----LtsHr~g~~WvMRrR  277 (311)
T PF12147_consen  208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG-----QPWHPQLEMIARV-----LTSHRDGKAWVMRRR  277 (311)
T ss_pred             CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC-----CCCCcchHHHHHH-----HhcccCCCceEEEec
Confidence            4459999999999999987555 6999999999999886432     2222211101111     1111123     589


Q ss_pred             CHHHHHHHHHhhCcC
Q 034380           80 TLEEFKSLAIGLLNS   94 (96)
Q Consensus        80 t~~e~~~l~~~AG~~   94 (96)
                      |.+|+.+|++.|||+
T Consensus       278 sq~EmD~Lv~~aGF~  292 (311)
T PF12147_consen  278 SQAEMDQLVEAAGFE  292 (311)
T ss_pred             CHHHHHHHHHHcCCc
Confidence            999999999999986

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR03438 probable methyltransferase

Probab=97.06  E-value=0.0013  Score=46.51  Aligned_cols=36  Identities=11%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .++++...+|+++++++.++|++++++|+|||.++|
T Consensus       140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            467777899999999999999999999999999886

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.04  E-value=0.0021  Score=45.90  Aligned_cols=79  Identities=13%  Similarity=-0.061  Sum_probs=47.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCC---CCccCCHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP---GAKERTLEEF   84 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~---~g~~Rt~~e~   84 (96)
                      .|++++..++|+++++....+++++.+ +.+ |+++|..  .+...   ........-.  .+....   ..-..+.+|+
T Consensus       213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~-g~liIs~--~p~~~---~~~~l~~~g~--~~~g~~~~~r~y~~s~eel  283 (315)
T PLN02585        213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAE-KRLIISF--APKTL---YYDILKRIGE--LFPGPSKATRAYLHAEADV  283 (315)
T ss_pred             cCEEEEcCEEEecCHHHHHHHHHHHHh-hcC-CEEEEEe--CCcch---HHHHHHHHHh--hcCCCCcCceeeeCCHHHH
Confidence            499999999999999988889998885 444 4555522  22211   0000001001  010000   1112389999


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      ++++++|||+|
T Consensus       284 ~~lL~~AGf~v  294 (315)
T PLN02585        284 ERALKKAGWKV  294 (315)
T ss_pred             HHHHHHCCCEE
Confidence            99999999986

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0025  Score=43.50  Aligned_cols=79  Identities=19%  Similarity=0.030  Sum_probs=53.5

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      |+++..-+|.--.|  .++.|+++++.|+|||+++.+|.+..+.+.-...  .+...+-.--..+ .|...|.+-|+.| 
T Consensus       147 DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~-dGC~ltrd~~e~L-  220 (252)
T KOG4300|consen  147 DTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLES-DGCVLTRDTGELL-  220 (252)
T ss_pred             eeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHHHH--HHHHhchhhheec-cceEEehhHHHHh-
Confidence            99999999887766  5999999999999999999999998876531100  1111221111223 6888888777654 


Q ss_pred             HhhCc
Q 034380           89 IGLLN   93 (96)
Q Consensus        89 ~~AG~   93 (96)
                      ++|-|
T Consensus       221 eda~f  225 (252)
T KOG4300|consen  221 EDAEF  225 (252)
T ss_pred             hhccc
Confidence            44443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.00  E-value=0.00072  Score=46.64  Aligned_cols=88  Identities=14%  Similarity=-0.008  Sum_probs=56.1

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      +.|++++-.||++.+|.+.  ++++|.+-++|||.+++.........---..........+.---..+-++-...+|...
T Consensus       124 ~FDvV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~  201 (243)
T COG2227         124 QFDVVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIR  201 (243)
T ss_pred             CccEEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHH
Confidence            3599999999999999865  89999999999999988776533211000000000111110001111356777889999


Q ss_pred             HHHhhCcCCC
Q 034380           87 LAIGLLNSVK   96 (96)
Q Consensus        87 l~~~AG~~v~   96 (96)
                      ++..+|+.++
T Consensus       202 ~~~~~~~~~~  211 (243)
T COG2227         202 WLLGANLKII  211 (243)
T ss_pred             hcccCCceEE
Confidence            9998887653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.89  E-value=0.0042  Score=45.44  Aligned_cols=79  Identities=9%  Similarity=-0.015  Sum_probs=53.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++++.++..-..+++++.+.|+|||++++.+...+......     ..+.+-  .. .++|.-.+.+++.+.
T Consensus       229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~  300 (383)
T PRK11705        229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQA  300 (383)
T ss_pred             CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHH
Confidence            4999988899999888888999999999999999999886555332111     011110  11 235666677776665


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++ .|+.|
T Consensus       301 ~~-~~~~v  307 (383)
T PRK11705        301 SE-GLFVM  307 (383)
T ss_pred             HH-CCcEE
Confidence            44 35543

>PRK04266 fibrillarin; Provisional

Probab=96.87  E-value=0.002  Score=43.99  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=24.3

Q ss_pred             eEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEE
Q 034380            9 QTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         9 D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      |+++     |+.++. +...+|+++++.|+|||+++|.
T Consensus       143 D~i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        143 DVIY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CEEE-----ECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            6554     666544 3456789999999999999994

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.84  E-value=0.0071  Score=41.24  Aligned_cols=78  Identities=6%  Similarity=0.026  Sum_probs=50.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++....+|..+|  ..++|+++.+.|+|||.+++.....+.-   +  + ....+... -.......-.+.+++.++
T Consensus       104 fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~--e-l~~~~~~~-~~~~~~~~~~~~~~l~~~  174 (251)
T PRK10258        104 FDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL---P--E-LHQAWQAV-DERPHANRFLPPDAIEQA  174 (251)
T ss_pred             EEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch---H--H-HHHHHHHh-ccCCccccCCCHHHHHHH
Confidence            499998888886665  4688999999999999999876543321   1  0 11111100 000112345688999999


Q ss_pred             HHhhCcC
Q 034380           88 AIGLLNS   94 (96)
Q Consensus        88 ~~~AG~~   94 (96)
                      +..+|+.
T Consensus       175 l~~~~~~  181 (251)
T PRK10258        175 LNGWRYQ  181 (251)
T ss_pred             HHhCCce
Confidence            9888764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=96.81  E-value=0.00097  Score=39.37  Aligned_cols=33  Identities=15%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             ceEeEec-ccccCCChHHHHHHHHHHHHhCCCCC
Q 034380            8 AQTIFMK-WVLHDWGDDLCLKILKNCYDALPEPG   40 (96)
Q Consensus         8 ~D~~ll~-~vlh~~~d~~~~~lL~~~~~al~~gg   40 (96)
                      .|++++. .++|++++++..++++++.+.++|||
T Consensus        68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            5999995 55999999999999999999999987

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.76  E-value=0.005  Score=41.21  Aligned_cols=81  Identities=11%  Similarity=-0.020  Sum_probs=49.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh--cCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN--LFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~~g~~Rt~~e~~   85 (96)
                      .|+++...+++.+++++..++++++.+.+++++ ++.+   .+..  .. .. ....+.-....  ...+-..++.+++.
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~-~i~~---~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERV-IFTF---APKT--AW-LA-FLKMIGELFPGSSRATSAYLHPMTDLE  191 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE-EEEE---CCCc--hH-HH-HHHHHHhhCcCcccccceEEecHHHHH
Confidence            599999999999998888899999998776542 2222   1211  11 00 00011100000  00123456999999


Q ss_pred             HHHHhhCcCCC
Q 034380           86 SLAIGLLNSVK   96 (96)
Q Consensus        86 ~l~~~AG~~v~   96 (96)
                      ++++++||+|.
T Consensus       192 ~~l~~~Gf~v~  202 (219)
T TIGR02021       192 RALGELGWKIV  202 (219)
T ss_pred             HHHHHcCceee
Confidence            99999999873

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.75  E-value=0.0085  Score=42.36  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      -|-++---++++++.+.-...++++++.|+|||++++.....++.+...    +.   +...--.+++|.-+|..+....
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~----~~---~~i~~yiFPgG~lPs~~~i~~~  210 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRR----FP---DFIDKYIFPGGELPSISEILEL  210 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCccccc----ch---HHHHHhCCCCCcCCCHHHHHHH
Confidence            4777777889999999999999999999999999999999887755310    11   1111112469999999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ..++|+.|
T Consensus       211 ~~~~~~~v  218 (283)
T COG2230         211 ASEAGFVV  218 (283)
T ss_pred             HHhcCcEE
Confidence            99999987

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.55  E-value=0.0099  Score=39.83  Aligned_cols=47  Identities=17%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             CCCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            3 VEVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         3 ~~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      +++|.  .|+++...++|++++++..+.++++.+.+  ++.++|.|...+.
T Consensus        99 ~~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587        99 DPFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             CCCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            44554  49999999999999888999999999986  6688888876554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.36  E-value=0.012  Score=33.02  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=33.4

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      +.|++++...++.+ .+...++++++.+.++|||.+++.
T Consensus        66 ~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          66 SFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            35999999999887 667899999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.34  E-value=0.0073  Score=42.39  Aligned_cols=84  Identities=18%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCC----CccCCHH
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPG----AKERTLE   82 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~----g~~Rt~~   82 (96)
                      ..|+++++.|+++..|.  ..+++.+.+.|+|||+++|-.....-....+.    ..+.+........|    .+-=+.+
T Consensus       158 ~fDaVvcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~~----i~~~E~vl~ivp~Gth~~ekfi~p~  231 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAGT----IFLAEIVLRIVPKGTHTWEKFINPE  231 (282)
T ss_pred             ccceeeeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhcc----ccHHHHHHHhcCCCCcCHHHcCCHH
Confidence            36999999999999886  78899999999999999998754331111000    00111111111112    2345788


Q ss_pred             HHHHHHHhhCcCCC
Q 034380           83 EFKSLAIGLLNSVK   96 (96)
Q Consensus        83 e~~~l~~~AG~~v~   96 (96)
                      |...++..+|.+|.
T Consensus       232 e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  232 ELTSILNANGAQVN  245 (282)
T ss_pred             HHHHHHHhcCcchh
Confidence            99999999988763

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.18  E-value=0.032  Score=38.09  Aligned_cols=73  Identities=21%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             CC-CCCCc-----ceEeEecccccCCChHH-HHHHHHHHHHhCCCCCE-----EEEEeeecCCCCCCchhhhhhhhhhhh
Q 034380            1 MF-VEVPK-----AQTIFMKWVLHDWGDDL-CLKILKNCYDALPEPGK-----IIVVESIMPEFPETDIISKNISRLHIT   68 (96)
Q Consensus         1 ~F-~~~P~-----~D~~ll~~vlh~~~d~~-~~~lL~~~~~al~~gg~-----l~I~e~~~~~~~~~~~~~~~~~~~dl~   68 (96)
                      || -|+|.     .|++.++-||...|+.. --++|+++.+-|+|+|.     ++|+   +|...               
T Consensus        92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV---lP~~C---------------  153 (219)
T PF11968_consen   92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV---LPLPC---------------  153 (219)
T ss_pred             cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE---eCchH---------------
Confidence            44 36773     39999999999999654 45899999999999998     6655   33221               


Q ss_pred             hhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380           69 VSNLFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        69 ml~~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                         .+ |++--+.+.|+++++.-||..
T Consensus       154 ---v~-NSRy~~~~~l~~im~~LGf~~  176 (219)
T PF11968_consen  154 ---VT-NSRYMTEERLREIMESLGFTR  176 (219)
T ss_pred             ---hh-cccccCHHHHHHHHHhCCcEE
Confidence               12 777778888999999888753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.05  E-value=0.024  Score=38.28  Aligned_cols=43  Identities=7%  Similarity=0.155  Sum_probs=37.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|.++-+.++|.++.+.-.+.++++.++|+|||+++++-...+
T Consensus       114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~  156 (213)
T TIGR03840       114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD  156 (213)
T ss_pred             cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence            4999999999999999999999999999999999777765543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.03  E-value=0.015  Score=41.81  Aligned_cols=41  Identities=7%  Similarity=0.213  Sum_probs=34.9

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHH-hCCCCCEEEE-Eeeec
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYD-ALPEPGKIIV-VESIM   49 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~-al~~gg~l~I-~e~~~   49 (96)
                      -++++...+.|++++++..+|+++++ .|.||+.++| +|.+.
T Consensus       159 ~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k  201 (319)
T TIGR03439       159 TILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK  201 (319)
T ss_pred             EEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            57777899999999999999999999 9999988777 34443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.76  E-value=0.041  Score=37.30  Aligned_cols=43  Identities=12%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|.++=+.++|.++.+.-.+.++++.++|+|||.++++-...+
T Consensus       117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~  159 (218)
T PRK13255        117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP  159 (218)
T ss_pred             eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence            3999999999999999999999999999999997665444333

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.76  E-value=0.039  Score=39.56  Aligned_cols=76  Identities=16%  Similarity=0.067  Sum_probs=54.7

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc--hhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD--IISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~--~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      |++++-.||-+-.+.  ...|+.++++|+|||.+|+--.+++.+....  +..+++.+-+.        =---|..-+..
T Consensus       184 DtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L~~  253 (315)
T PF08003_consen  184 DTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAALKN  253 (315)
T ss_pred             CEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHHHH
Confidence            999999999998887  8889999999999999887666677654321  11122222111        12347889999


Q ss_pred             HHHhhCcC
Q 034380           87 LAIGLLNS   94 (96)
Q Consensus        87 l~~~AG~~   94 (96)
                      |++++||+
T Consensus       254 wl~r~gF~  261 (315)
T PF08003_consen  254 WLERAGFK  261 (315)
T ss_pred             HHHHcCCc
Confidence            99999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=95.65  E-value=0.027  Score=39.35  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             CCcceEeEe----cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            5 VPKAQTIFM----KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         5 ~P~~D~~ll----~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      .|..|++++    +||==||.|+--+++++++.+-|.|||.+|+ |    +++-.+ +...+...  .-+..+..--.-.
T Consensus       164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-E----PQpWks-Y~kaar~~--e~~~~ny~~i~lk  235 (288)
T KOG2899|consen  164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-E----PQPWKS-YKKAARRS--EKLAANYFKIFLK  235 (288)
T ss_pred             cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-c----CCchHH-HHHHHHHH--HHhhcCccceecC
Confidence            456677765    7777899999999999999999999998754 3    232221 11111111  1111222344556


Q ss_pred             HHHHHHHHHhhC
Q 034380           81 LEEFKSLAIGLL   92 (96)
Q Consensus        81 ~~e~~~l~~~AG   92 (96)
                      .+.+..|+.+++
T Consensus       236 p~~f~~~l~q~~  247 (288)
T KOG2899|consen  236 PEDFEDWLNQIV  247 (288)
T ss_pred             HHHHHhhhhhhh
Confidence            667777776663

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.58  E-value=0.0045  Score=37.93  Aligned_cols=36  Identities=28%  Similarity=0.684  Sum_probs=29.7

Q ss_pred             eEeEe----cccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            9 QTIFM----KWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         9 D~~ll----~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      |++++    +||==+|+|+-..++++++++.|+|||.+|+
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil   42 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL   42 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence            55544    5666699999999999999999999987754

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=0.0069  Score=39.64  Aligned_cols=39  Identities=26%  Similarity=0.336  Sum_probs=36.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      +|+++..||+-++.-++....|+.|.+-|+|||+|-|.=
T Consensus        48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv   86 (185)
T COG4627          48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV   86 (185)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence            599999999999999999999999999999999987753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.35  E-value=0.025  Score=37.85  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=36.9

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      +|+ .|+++...|+|..+.+...++++++.++++|||.++|...+
T Consensus        91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen   91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence            344 49998888999999999999999999999999998886654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.15  E-value=0.12  Score=35.46  Aligned_cols=44  Identities=9%  Similarity=0.036  Sum_probs=39.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|+++=+.+++.++++.-.+..+++.+.|+|||+++++-.-.+.
T Consensus       125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~  168 (226)
T PRK13256        125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK  168 (226)
T ss_pred             cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence            49999999999999999999999999999999999998765443

>PRK05785 hypothetical protein; Provisional

Probab=94.49  E-value=0.11  Score=35.27  Aligned_cols=40  Identities=10%  Similarity=0.160  Sum_probs=32.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|+++....+|+++|.  .+.|+++++.|+|  .++|+|...++
T Consensus       111 fD~v~~~~~l~~~~d~--~~~l~e~~RvLkp--~~~ile~~~p~  150 (226)
T PRK05785        111 FDVVMSSFALHASDNI--EKVIAEFTRVSRK--QVGFIAMGKPD  150 (226)
T ss_pred             EEEEEecChhhccCCH--HHHHHHHHHHhcC--ceEEEEeCCCC
Confidence            3999999999999885  6689999999999  45677765544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=94.33  E-value=0.15  Score=37.53  Aligned_cols=39  Identities=13%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             ceEeEec---ccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMK---WVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~---~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++-   +..|.++++.+.++++.+++.|+|||+++|+-
T Consensus       299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            5988884   45566788888999999999999999999984

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.12  E-value=0.16  Score=36.69  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             ceEeEecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDW---GDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~---~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++..--+|+.   +.+...++++.+.+.|+|||.++|+-.
T Consensus       262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            4999988778863   456678999999999999999988765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=94.05  E-value=0.18  Score=32.59  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=32.6

Q ss_pred             ceEeEecccccCCChH-------------------HHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDD-------------------LCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~-------------------~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|+++..-..|..+++                   ...++++.+.+.|+|||++++++....
T Consensus        83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            5988887766655442                   146789999999999999999886443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=93.95  E-value=0.22  Score=32.72  Aligned_cols=78  Identities=15%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhh---------hhhcCCCCcc
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHIT---------VSNLFPGAKE   78 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~---------ml~~~~~g~~   78 (96)
                      .|++++.+++|+.+|.  .++|+++.+.   ++.++|. .  +......  ........-.         ......+.+.
T Consensus        76 fD~Vi~~~~l~~~~d~--~~~l~e~~r~---~~~~ii~-~--p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (194)
T TIGR02081        76 FDYVILSQTLQATRNP--EEILDEMLRV---GRHAIVS-F--PNFGYWR--VRWSILTKGRMPVTGELPYDWYNTPNIHF  145 (194)
T ss_pred             cCEEEEhhHhHcCcCH--HHHHHHHHHh---CCeEEEE-c--CChhHHH--HHHHHHhCCccccCCCCCccccCCCCccc
Confidence            5999999999999874  5678877665   4444432 1  1110000  0000000000         0001124567


Q ss_pred             CCHHHHHHHHHhhCcCC
Q 034380           79 RTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v   95 (96)
                      .|.+++.++++++||+|
T Consensus       146 ~s~~~~~~ll~~~Gf~v  162 (194)
T TIGR02081       146 CTIADFEDLCGELNLRI  162 (194)
T ss_pred             CcHHHHHHHHHHCCCEE
Confidence            89999999999999986

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=93.95  E-value=0.28  Score=33.06  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhCCCCCEEEEE
Q 034380           26 LKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~   45 (96)
                      ..+++++.+.|+|||.+++.
T Consensus       197 ~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       197 RRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             HHHHHHHHHhcccCCEEEEE
Confidence            47899999999999998773

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=93.51  E-value=0.81  Score=31.83  Aligned_cols=82  Identities=9%  Similarity=-0.061  Sum_probs=51.1

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh----hhhhhcCCCCccCCHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH----ITVSNLFPGAKERTLEEF   84 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d----l~ml~~~~~g~~Rt~~e~   84 (96)
                      -++++-.++..++.+++.++|+.+.+...||+.| ++|.+.+-....... .......    ..+--+. .+  -+..|.
T Consensus       160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l-~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~  234 (260)
T TIGR00027       160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRL-AFDYVRPLDGEWRAG-MRAPVYHAARGVDGSGLV-FG--IDRADV  234 (260)
T ss_pred             eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEE-EEEeccccchhHHHH-HHHHHHHhhhcccccccc-cC--CChhhH
Confidence            5677788999999999999999999887777665 467665421111000 0011110    0111111 22  356899


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      .++|++.||++
T Consensus       235 ~~~l~~~Gw~~  245 (260)
T TIGR00027       235 AEWLAERGWRA  245 (260)
T ss_pred             HHHHHHCCCee
Confidence            99999999986

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.49  E-value=0.36  Score=32.92  Aligned_cols=60  Identities=8%  Similarity=-0.092  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380           21 GDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        21 ~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ....+.+.-+.+.++|+|||.++|.|..........         |      +..-.-++.+-..+-.+.+||++
T Consensus       141 ~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------d------t~~~~ri~~a~V~a~veaaGFkl  200 (238)
T COG4798         141 HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------D------TITLHRIDPAVVIAEVEAAGFKL  200 (238)
T ss_pred             CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------h------hhhhcccChHHHHHHHHhhccee
Confidence            367788999999999999999999999887643211         1      01122334455666667777653

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.41  E-value=0.13  Score=37.91  Aligned_cols=43  Identities=2%  Similarity=-0.022  Sum_probs=38.6

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      |.+.|..++--.++++..++++.+.++++|||||+.=-...+.
T Consensus       297 ~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  297 DRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             eEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            9999999999999999999999999999999999887665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.16  E-value=0.083  Score=38.95  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=35.3

Q ss_pred             CCCcceEeEecccccCCChHH----HHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            4 EVPKAQTIFMKWVLHDWGDDL----CLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         4 ~~P~~D~~ll~~vlh~~~d~~----~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      ++|.+|.|.+.-++|..-.+.    ....+++.-+.+.|||.++|+|.-.+
T Consensus       179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            567778877766655554444    44489999999999999999997555

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.96  E-value=0.2  Score=35.19  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++.+-|+|-.-.+.  ..+|+.++++|+|+|+++|.=
T Consensus       152 fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  152 FDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             eEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEE
Confidence            4999999999777665  899999999999988877653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=92.78  E-value=0.19  Score=29.83  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++....     ....++++++++.|+|||++++.
T Consensus        89 ~D~v~~~~~~-----~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSG-----GLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCEEEECCcc-----hhHHHHHHHHHHHcCCCCEEEEE
Confidence            5888775533     34468999999999999998874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=92.50  E-value=0.28  Score=35.77  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CcceEeEecccccC--CChHHHHHHHHHHHHhCCCCCEEE
Q 034380            6 PKAQTIFMKWVLHD--WGDDLCLKILKNCYDALPEPGKII   43 (96)
Q Consensus         6 P~~D~~ll~~vlh~--~~d~~~~~lL~~~~~al~~gg~l~   43 (96)
                      |+.|++-++-++|.  -+.+.+..+|+|+++.|+|||-.|
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence            45699999999996  356777888999999999999765

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=92.47  E-value=0.12  Score=37.33  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             eEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            9 QTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         9 D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      |++-+.-.+|.-  +.+.+..+|+++.+.|+|||.+|..
T Consensus       147 DvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  147 DVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             EEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999999999973  6777888999999999999998864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=91.94  E-value=0.21  Score=34.09  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=30.1

Q ss_pred             CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      |++..  |+++++-.|..=+   ....|+.+.+.|+|||.+.|.|..
T Consensus       117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEec
Confidence            44543  9999888776654   467899999999999999999963

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.54  E-value=0.44  Score=33.34  Aligned_cols=46  Identities=13%  Similarity=0.337  Sum_probs=37.7

Q ss_pred             CCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            4 EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         4 ~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      +++..|+++++++|...++++-.++++++.+.+.+  .|||+|.-.+.
T Consensus        99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen   99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence            34456999999999999998888899998877655  89999975554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=91.08  E-value=0.3  Score=32.05  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      +.|+++... +|+++     .+++.+++.|+|||++++..
T Consensus       109 ~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       109 QFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             CccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEc
Confidence            359887654 55443     46788899999999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=90.45  E-value=0.5  Score=30.75  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++....+++     ..+++.+.+.|+|||++++...
T Consensus        98 ~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         98 ADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             CCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe
Confidence            5998887655433     4688999999999999987554

>PRK14968 putative methyltransferase; Provisional

Probab=90.16  E-value=1.4  Score=28.10  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhCCCCCEEEEEe
Q 034380           25 CLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      ...+++++.+.|+|||.+++.-
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~  148 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQ  148 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEE
Confidence            4678999999999999988764

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=89.91  E-value=0.77  Score=32.48  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EeeecC
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV-VESIMP   50 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I-~e~~~~   50 (96)
                      =.+++...|.|+++++|..+|.+++.+|+||-.+++ +|...+
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence            456778899999999999999999999999966555 444433

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=89.86  E-value=0.76  Score=30.28  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|++++..     +..+...+++.+.+.|+|||++++
T Consensus       112 ~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        112 FDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence            58777632     334567899999999999999986

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.26  E-value=1.8  Score=30.79  Aligned_cols=39  Identities=8%  Similarity=-0.020  Sum_probs=33.8

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      -+.++-.++..++.++..++|+++.+..+||++++....
T Consensus       172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            467788899999999999999999999888888776554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=89.19  E-value=1.3  Score=29.66  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             ceEeEecccccCCChH---------HHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDD---------LCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~---------~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++..-..|-.++.         .+..+|+.+.+.|+|||.++|...
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4887765444433321         135789999999999999999754

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=89.01  E-value=0.86  Score=31.52  Aligned_cols=81  Identities=20%  Similarity=0.131  Sum_probs=44.1

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCC-CCEEEEEeeecCCCCC-CchhhhhhhhhhhhhhhcCCCCccCCHH--HH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPE-PGKIIVVESIMPEFPE-TDIISKNISRLHITVSNLFPGAKERTLE--EF   84 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~-gg~l~I~e~~~~~~~~-~~~~~~~~~~~dl~ml~~~~~g~~Rt~~--e~   84 (96)
                      |++.+-++|..-.+.  .++|+.++.+++| +|++|+. .++|-.+- +...+....--| +.+ .. +||.+.++  .+
T Consensus       171 dli~clNlLDRc~~p--~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~rPd-n~L-e~-~Gr~~ee~v~~~  244 (288)
T KOG3987|consen  171 DLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPLRPD-NLL-EN-NGRSFEEEVARF  244 (288)
T ss_pred             ehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcCCch-HHH-Hh-cCccHHHHHHHH
Confidence            666666666554443  7999999999999 6777654 33442110 000000000001 112 22 67644332  35


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      -++|+++|++|
T Consensus       245 ~e~lr~~g~~v  255 (288)
T KOG3987|consen  245 MELLRNCGYRV  255 (288)
T ss_pred             HHHHHhcCchh
Confidence            67899999987

>PTZ00146 fibrillarin; Provisional

Probab=88.81  E-value=2.2  Score=30.47  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=25.7

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      ..|++++...    ..++...++.+++..|+|||.++|.
T Consensus       202 ~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        202 MVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence            3588876653    2335566777899999999999994

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=88.67  E-value=1  Score=29.00  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=30.8

Q ss_pred             CCCCC-c-ceEeEecccccCCCh---HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            2 FVEVP-K-AQTIFMKWVLHDWGD---DLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         2 F~~~P-~-~D~~ll~~vlh~~~d---~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      |++++ . .|+++.-==+|.-.+   +-..++++.+++.|+|||+++++-.
T Consensus        91 ~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   91 FEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            45555 2 488777433444443   4578999999999999999976544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=88.46  E-value=0.74  Score=30.57  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhCCCCCEEEEEe
Q 034380           25 CLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      ...+|+++++.|+|||.++|..
T Consensus       135 ~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        135 QPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             CHHHHHHHHHHcCCCCEEEEEc
Confidence            4678999999999999999864

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=88.46  E-value=0.97  Score=29.94  Aligned_cols=34  Identities=12%  Similarity=0.246  Sum_probs=26.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++...+ .     ....+++.+++.|+|||++++++.
T Consensus       113 fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        113 FDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             ccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEEeC
Confidence            598887542 2     246789999999999999998864

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=87.64  E-value=0.42  Score=33.40  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=48.9

Q ss_pred             CCc-ceEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            5 VPK-AQTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      +|+ +|+++...+|---  +.++-.+.|+|+.+.|+|||.+++....-...   ...+  .  ..+       ..-.-+.
T Consensus       155 ~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~---Y~vG--~--~~F-------~~l~l~e  220 (256)
T PF01234_consen  155 LPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY---YMVG--G--HKF-------PCLPLNE  220 (256)
T ss_dssp             S-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE---EEET--T--EEE-------E---B-H
T ss_pred             CccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee---EEEC--C--Eec-------ccccCCH
Confidence            565 7998887766433  35567899999999999999999988733210   0000  0  000       1223467


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      +..++-+++||+.|
T Consensus       221 e~v~~al~~aG~~i  234 (256)
T PF01234_consen  221 EFVREALEEAGFDI  234 (256)
T ss_dssp             HHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHcCCEE
Confidence            88899999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=87.17  E-value=0.61  Score=30.71  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhCCCCCEEEEEe
Q 034380           26 LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e   46 (96)
                      ..+++.+++.|+|||.+++.-
T Consensus       112 ~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091       112 PHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             HHHHHHHHHHhCCCCEEEEEe
Confidence            468999999999999997754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=84.55  E-value=1.9  Score=29.59  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=27.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|+++.     +...+....+++.+.+.|+|||.+++.+....
T Consensus       180 fD~Vva-----ni~~~~~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        180 ADVIVA-----NILANPLLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             cCEEEE-----cCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence            466653     23334457889999999999999999866543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=84.06  E-value=3  Score=28.51  Aligned_cols=20  Identities=15%  Similarity=0.258  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhCCCCCEEEE
Q 034380           25 CLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I   44 (96)
                      ..++++++.+.|+|||.+++
T Consensus       217 ~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        217 YRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             HHHHHHHHHHhcccCCEEEE
Confidence            36789999999999999887

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=83.01  E-value=3.2  Score=29.67  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=29.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+.+++-.|..=+   ...+++.+.+.|++||.+.|.|.
T Consensus       229 vDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  229 VDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             ccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEeh
Confidence            48887777665543   46789999999999999999995

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=82.93  E-value=1.6  Score=29.00  Aligned_cols=30  Identities=10%  Similarity=0.128  Sum_probs=23.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++...++..++        .+.+.|+|||++++.
T Consensus       143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~  172 (205)
T PRK13944        143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP  172 (205)
T ss_pred             ccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence            499999888876653        466789999999874

>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily

Probab=82.88  E-value=3.1  Score=27.79  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             eEeEecccccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            9 QTIFMKWVLHDWGD----------DLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         9 D~~ll~~vlh~~~d----------~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      |++.+-+.|||++-          +.-.++.+++++.|+|+ .++|.-...|
T Consensus        52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~-allIW~tt~P  102 (183)
T cd01842          52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIE-CLIVWNTAMP  102 (183)
T ss_pred             eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCc-cEEEEecCCC
Confidence            99999999999986          44557777777778777 4555555444

SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.

>TIGR00417 speE spermidine synthase

Probab=82.81  E-value=2.5  Score=29.34  Aligned_cols=38  Identities=13%  Similarity=0.004  Sum_probs=26.4

Q ss_pred             ceEeEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDL--CLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~--~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++-..-+.-+...  ..++++++++.|+|||.+++.
T Consensus       146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       146 FDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             ccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            48887754422222222  468899999999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=82.72  E-value=2  Score=27.92  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhCCCCCEEEEE
Q 034380           25 CLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I~   45 (96)
                      ..++|+++.+.|+|||+++|.
T Consensus       125 ~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       125 VELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHHHHHHHHHccCCCEEEEE
Confidence            367899999999999999985

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=82.41  E-value=2.1  Score=30.74  Aligned_cols=29  Identities=14%  Similarity=0.041  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380           24 LCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus        24 ~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      +..+.|+.+.+.|+||||++|+-+.--++
T Consensus       218 ~L~~~L~~~~~~L~~gGrl~VISfHSLED  246 (305)
T TIGR00006       218 ELEEALQFAPNLLAPGGRLSIISFHSLED  246 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence            34678999999999999999998754444

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.09  E-value=0.83  Score=34.88  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             CCCc-c-eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            4 EVPK-A-QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         4 ~~P~-~-D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      |+|. + |.+-+++++..|...+. .+|-.+-+.|+|||-++..-.-..
T Consensus       176 Pfp~~~fDmvHcsrc~i~W~~~~g-~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  176 PFPSNAFDMVHCSRCLIPWHPNDG-FLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cCCccchhhhhcccccccchhccc-ceeehhhhhhccCceEEecCCccc
Confidence            4565 4 99999999999999985 588889999999999888776555

; GO: 0008168 methyltransferase activity

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=82.01  E-value=4.4  Score=23.29  Aligned_cols=41  Identities=10%  Similarity=0.165  Sum_probs=30.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|++ .....+++.+  ....++.+.+.++|+|.+++.+.....
T Consensus       120 ~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         120 FDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            3888 5555544444  678899999999999999998876554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=81.85  E-value=2.1  Score=29.10  Aligned_cols=38  Identities=11%  Similarity=0.134  Sum_probs=33.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|+++=+..++-.+++.-.+-.+++++.|+|||+++++
T Consensus       117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            39999999999999999999999999999999994443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=80.99  E-value=2.9  Score=27.93  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++....++.+        +.+.+.|+|||++++.-
T Consensus       146 fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        146 YDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence            49999877665544        34566899999998853

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=80.08  E-value=2.8  Score=29.90  Aligned_cols=30  Identities=20%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380           23 DLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus        23 ~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      ++-.++|..+.+.|+|||+++|+-+.--++
T Consensus       213 ~~L~~~L~~~~~~L~~gGrl~visfHSlED  242 (296)
T PRK00050        213 EELERALEAALDLLKPGGRLAVISFHSLED  242 (296)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCcHHH
Confidence            345678999999999999999998765554

>PRK07402 precorrin-6B methylase; Provisional

Probab=80.04  E-value=2.9  Score=27.39  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380           24 LCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus        24 ~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      ...++++++.+.|+|||++++.....
T Consensus       120 ~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        120 PIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            45789999999999999999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-24
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		3e-21
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		3e-21
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-13
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		1e-12
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-11
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		4e-09
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		4e-09
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		4e-09
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-08
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		6e-08
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		8e-08
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		4e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 63/90 (70%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV +PKA  +FMKW+ HDW D+ CLK LKNCY+ALP+ GK+IV E I+P  P++ + +K
Sbjct: 252 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 311
Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  + + +    PG KERT +EF+ LA G
Sbjct: 312 GVVHIDVIMLAHNPGGKERTQKEFEDLAKG 341

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF EVP   TI MKW+LHDW D  C  +LKNCYDALP  GK+++V+ I+P  PE +  S+
Sbjct: 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQ 312
Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +  + + +    PG +ER   EF++LA G
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALARG 342

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VPK   IF+KW+ HDW D+ CLK+LKNCY ALP+ GK+IV E I+P  P+  I +K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314
Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLAIG 90
            +      +    PG KERT +EF++LA+ 
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALAMA 344

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VP+   + +K V H+W D+ C++ L NC+ AL   GK+I+VE I+PE P T   SK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 61  NISRLH----ITVSNLFPGAKERTLEEFKSLA 88
            +S L     ITV     G +ERT ++++ L+
Sbjct: 321 LVSTLDNLMFITV-----GGRERTEKQYEKLS 347

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 2   FVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKN 61
           F  VP+     +K V H+W D+ C++ L NC+ AL   GK+I+VE I+PE P T   SK 
Sbjct: 262 FASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKL 321
Query: 62  ISRLH----ITVSNLFPGAKERTLEEFKSLA 88
           +S L     ITV     G +ERT ++++ L+
Sbjct: 322 VSTLDNLXFITV-----GGRERTEKQYEKLS 347

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF+ VPKA  + +K VLHDW D  C+KILK C +A+    + GK+IV++ ++ E  + + 
Sbjct: 245 MFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQ 304
Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
           +++    +++T+S +    KER  EE+K L I
Sbjct: 305 LTQIKLLMNVTISCV--NGKERNEEEWKKLFI 334

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF  +P A  + +KWVLHDW D+  LKILKN  +A+    + GK+I+++  + E  +   
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
           +++      + +  +F G KERT +E++ L
Sbjct: 305 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 333

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF  +P A  + +KWVLHDW D+  LKILKN  +A+    + GK+I+++  + E  +   
Sbjct: 244 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 303
Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
           +++      + +  +F G KERT +E++ L
Sbjct: 304 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 332

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF  +P A  + +KWVLHDW D+  LKILKN  +A+    + GK+I+++  + E  +   
Sbjct: 241 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 300
Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSL 87
           +++      + +  +F G KERT +E++ L
Sbjct: 301 LTELQLDYDLVMLTMFLG-KERTKQEWEKL 329

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF  +P A  + +K++LH+W D  CL+ILK C +A+    + GK+ +++ ++ +  + + 
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299
Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
           +++   +L + V+      KER  EE+K L I
Sbjct: 300 VTQ--IKLLMDVNMACLNGKERNEEEWKKLFI 329

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 2   FVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDII 58
           F  +P A  + +K++LH+W D  CL+ILK C +A+    + GK+ +++ ++ +  + + +
Sbjct: 241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQV 300
Query: 59  SKNISRLHITVSNLFPGAKERTLEEFKSLAI 89
           ++   +L   V+      KER  EE+K L I
Sbjct: 301 TQ--IKLLXDVNXACLNGKERNEEEWKKLFI 329

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 4   EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51
           EVP A    +K +LH+WGD+  ++IL NC    P  G+++V+++++PE
Sbjct: 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE 291

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 5   VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE 51
           +P+A    +  VLHDW D  C  +L+  Y      G I+V+ES++ E
Sbjct: 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	7e-36
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	9e-32
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	5e-31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-30
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-29
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	2e-29
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	5e-29
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	2e-28
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	3e-28
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-26
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	2e-26
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-24
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	9e-23
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-19
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	9e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	8e-04

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  123 bits (311), Expect = 7e-36
 Identities = 41/88 (46%), Positives = 57/88 (64%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF EVP   TI MKW+LHDW D  C  +LKNCYDALP  GK+++V+ I+P  PE +  S+
Sbjct: 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQ 312

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +  + + +    PG +ER   EF++LA
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALA 340

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  120 bits (302), Expect = 1e-34
 Identities = 44/88 (50%), Positives = 58/88 (65%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VPK   IF+KW+ HDW D+ CLK+LKNCY ALP+ GK+IV E I+P  P+  I +K
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATK 314

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +      +    PG KERT +EF++LA
Sbjct: 315 VVIHTDALMLAYNPGGKERTEKEFQALA 342

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  113 bits (283), Expect = 9e-32
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VP+   + +K V H+W D+ C++ L NC+ AL   GK+I+VE I+PE P T   SK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +S L   +     G +ERT ++++ L+
Sbjct: 321 LVSTLDNLMFITV-GGRERTEKQYEKLS 347

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  110 bits (277), Expect = 5e-31
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEP---GKIIVVESIMPEFPETDI 57
           MF  +P A  + +K++LH+W D  CL+ILK C +A+      GK+ +++ ++ +  + + 
Sbjct: 240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299

Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSLA 88
           +++   +L + V+      KER  EE+K L 
Sbjct: 300 VTQ--IKLLMDVNMACLNGKERNEEEWKKLF 328

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  109 bits (275), Expect = 1e-30
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
              EVP A    +K +LH+WGD+  ++IL NC   +P  G+++V+++++PE  +    SK
Sbjct: 241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND-AHQSK 299

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +    +         +ERT  E + L 
Sbjct: 300 EMD-FMMLA---ARTGQERTAAELEPLF 323

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  107 bits (268), Expect = 1e-29
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 1   MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
            F  +P  A    +K VLHDW DD  ++IL+    A+    +++V+++++ E P    + 
Sbjct: 261 FFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLF 320

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
            ++  L      +  G  ER+  EF +L 
Sbjct: 321 VDLLLL------VLVGGAERSESEFAALL 343

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  106 bits (267), Expect = 2e-29
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 1   MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
            F  +P  A  + + +VL +W D+  L IL+ C  AL   G+++V++    E    D   
Sbjct: 241 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFF 300

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
             +  L +     F G + RT +E   LA
Sbjct: 301 STLLDLRMLT---FMGGRVRTRDEVVDLA 326

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  105 bits (264), Expect = 5e-29
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 1   MFVEVP-KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
            F  +P KA  I + +VL +W D   ++IL  C +AL   G+I++ E         +   
Sbjct: 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF 301

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
             +  L + V   F G   RT E++  LA
Sbjct: 302 TELD-LRMLV---FLGGALRTREKWDGLA 326

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  103 bits (259), Expect = 2e-28
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 1   MFVEVP-KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
           M  EVP       +  ++ D  +   L++L NC +A+   G+++V+E  +    E   +S
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA-SEPSPMS 284

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
                +H+ +       + RT EE   L 
Sbjct: 285 VLWD-VHLFM---ACAGRHRTTEEVVDLL 309

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  102 bits (257), Expect = 3e-28
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 1   MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
            F  +P  A    +  VLHDW D   + IL+ C +A    G ++V+E++  +      + 
Sbjct: 228 FFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMD 287

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
                L +     + G KER+L E   LA
Sbjct: 288 -----LRMLT---YFGGKERSLAELGELA 308

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 1   MFVE-VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS 59
           ++ E  P+A  +    +L+   + L   + K  +DA+   G++++++ ++ +    +   
Sbjct: 249 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD--PENPNF 306

Query: 60  KNISRLHITVSNLFPGAKERTLEEFKSLA 88
             +S   +     F     +    +K + 
Sbjct: 307 DYLSHYILGAGMPFSVLGFKEQARYKEIL 335

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score = 98.8 bits (246), Expect = 2e-26
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEP---GKIIVVESIMPEFPETDI 57
           MF  +P A  + +KWVLHDW D+  LKILKN  +A+      GK+I+++  + E  +   
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304

Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSLA 88
           +++      + +  +F G KERT +E++ L 
Sbjct: 305 LTELQLDYDLVMLTMFLG-KERTKQEWEKLI 334

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 92.4 bits (230), Expect = 2e-24
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 1   MFVEV--PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDII 58
            F          + +   LH +    C ++L+    AL   GK+IV + I      T   
Sbjct: 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPD 283

Query: 59  SKNISRLHITVSNLFPGAKERTLEEFKSLA 88
           +   S L +      P     T  E++S+ 
Sbjct: 284 AAAFS-LVMLA--TTPNGDAYTFAEYESMF 310

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 88.6 bits (220), Expect = 9e-23
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 1   MFVEVP----KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD 56
           +          A  + +   LH +      +++ +    +   G ++++   M +   T 
Sbjct: 238 LLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP 297

Query: 57  IISKNISRLHITVSNLFPGAKERTLEEFKSLA 88
            +S + S LH+ V       +         + 
Sbjct: 298 ALSADFS-LHMMV--NTNHGELHPTPWIAGVV 326

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 80.1 bits (198), Expect = 2e-19
 Identities = 8/79 (10%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 11  IFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVS 70
           ++M   L  + ++  + IL     ++ +  K+ ++E++       +  S  ++++ +  +
Sbjct: 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR-QRYETASYCLTQISLYFT 310

Query: 71  NL-FPGAKERTLEEFKSLA 88
            +    +K    ++     
Sbjct: 311 AMANGNSKMFHSDDLIRCI 329

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 11  IFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETD 56
           I+++WV+    D    + L+ C  +L   G I++ +++  E    D
Sbjct: 150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD 195

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 11  IFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS 63
           I ++W      D   +K  K+C  AL  P   I  +          +  ++ S
Sbjct: 162 IVIQWTAIYLTDADFVKFFKHCQQAL-TPNGYIFFKENCSTGDRFLVDKEDSS 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.95
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.9
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.89
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.83
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.82
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.82
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.82
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.79
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.79
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.79
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.79
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.77
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.7
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.69
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.68
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.65
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.97
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.96
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.94
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.89
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.88
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.88
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.86
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.84
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.84
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.8
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.78
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.76
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.75
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.73
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.69
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.68
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.63
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.63
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.62
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.62
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.61
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.6
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.59
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.56
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.54
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.53
3ocj_A	305	Putative exported protein; structural genomics, PS	98.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.52
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.5
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.42
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.4
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.37
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.36
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.35
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.35
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.34
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.34
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.34
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.32
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.32
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.3
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.3
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.26
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.26
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.25
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.2
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.19
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.19
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.18
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.12
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.11
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.06
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.02
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.02
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.99
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.97
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.94
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.84
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.78
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.52
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.51
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.48
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.4
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.25
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.22
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.21
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.09
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.94
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.8
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.7
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.55
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.54
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.5
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.48
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.42
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.36
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.28
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.27
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.16
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.15
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.14
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.08
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.01
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.99
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.99
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.93
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	95.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.21
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.08
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	95.05
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	94.96
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	94.74
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	94.62
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	94.47
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	94.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.42
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.39
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	94.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	94.29
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	94.07
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	94.07
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	93.84
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.82
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.76
2qm3_A	373	Predicted methyltransferase; putative methyltransf	93.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	93.44
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	93.25
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	92.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.82
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	92.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	92.59
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.37
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	92.35
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	92.29
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	92.05
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	91.76
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	91.61
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	91.52
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	91.47
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	91.4
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	91.12
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	91.1
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	91.01
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.96
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	90.93
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	90.47
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	90.27
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	90.16
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	89.92
3sso_A	419	Methyltransferase; macrolide, natural product, ros	89.89
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	89.56
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	89.33
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	89.19
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	88.82
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	88.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	88.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.92
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	87.68
2frn_A	278	Hypothetical protein PH0793; structural genomics,	87.24
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	87.1
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	87.01
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	86.76
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	86.74
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	86.7
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	86.61
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	86.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	86.44
3lpm_A	259	Putative methyltransferase; structural genomics, p	86.42
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	86.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	85.92
2i7c_A	283	Spermidine synthase; transferase, structural genom	85.72
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	85.58
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	85.41
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	85.38
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	85.36
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	85.29
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	85.25
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	84.99
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	84.77
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	84.6
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	84.46
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	84.27
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	83.51
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	83.28
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	82.93
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	82.92
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	82.8
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	82.39
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	82.03
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	81.97
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	81.9
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	81.78
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	81.7
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	81.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	81.52
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	81.33
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	81.0
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	80.77
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	80.75
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	80.41
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	80.21
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	80.05

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.95  E-value=5e-28  Score=171.28  Aligned_cols=91  Identities=24%  Similarity=0.368  Sum_probs=82.0

Q ss_pred             CC-CCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MF-VEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F-~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      || +++|++|+|++++|||||+|++|++||++|+++|+|||+|+|+|.++++++..+.   ....+|+.||..+ +|++|
T Consensus       237 ~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~---~~~~~dl~ml~~~-~g~er  312 (353)
T 4a6d_A          237 FFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPL---LTQLYSLNMLVQT-EGQER  312 (353)
T ss_dssp             TTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH---HHHHHHHHHHHSS-SCCCC
T ss_pred             cccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCH---HHHHHHHHHHHhC-CCcCC
Confidence            57 4567789999999999999999999999999999999999999999998766553   3567899999987 99999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++|+++|||++
T Consensus       313 t~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          313 TPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             CHHHHHHHHHHHTCEE
T ss_pred             CHHHHHHHHHHCCCce
Confidence            9999999999999964

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.90  E-value=3.2e-23  Score=147.13  Aligned_cols=95  Identities=44%  Similarity=0.818  Sum_probs=82.4

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|++|+|++++++|+|+|+++.++|++++++|+|||+++|+|.+.++....+........+|+.|+..+.+|++||
T Consensus       253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt  332 (364)
T 3p9c_A          253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERY  332 (364)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCB
T ss_pred             cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCC
Confidence            56788888999999999999999999999999999999999999999998765543333345678999995444999999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++++++|||++
T Consensus       333 ~~e~~~ll~~AGF~~  347 (364)
T 3p9c_A          333 EREFQALARGAGFTG  347 (364)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCce
Confidence            999999999999975

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.89  E-value=1.2e-22  Score=144.33  Aligned_cols=95  Identities=46%  Similarity=0.826  Sum_probs=83.0

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|++|+|++++++|+|+|+++.++|++++++|+|||+|+|+|.+.++....+........+|+.|+..+.+|++||
T Consensus       255 ~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt  334 (368)
T 3reo_A          255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT  334 (368)
T ss_dssp             TTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred             CCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence            46788888999999999999999999999999999999999999999988766544333445678999987545899999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++|+++|||++
T Consensus       335 ~~e~~~ll~~AGF~~  349 (368)
T 3reo_A          335 EKEFQALAMASGFRG  349 (368)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHCCCee
Confidence            999999999999975

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.83  E-value=2e-20  Score=131.57  Aligned_cols=90  Identities=27%  Similarity=0.543  Sum_probs=79.4

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|++|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++...+.    ....+|+.|+... +|++||
T Consensus       241 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~-~~~~~t  315 (348)
T 3lst_A          241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH----QSKEMDFMMLAAR-TGQERT  315 (348)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC----HHHHHHHHHHHTT-SCCCCB
T ss_pred             CCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhhhcChhhhhcC-CCcCCC
Confidence            35788867999999999999999999999999999999999999999988764332    3467899998865 999999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++++++|||++
T Consensus       316 ~~e~~~ll~~aGf~~  330 (348)
T 3lst_A          316 AAELEPLFTAAGLRL  330 (348)
T ss_dssp             HHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCce
Confidence            999999999999975

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.82  E-value=2.5e-20  Score=130.02  Aligned_cols=87  Identities=30%  Similarity=0.482  Sum_probs=75.7

Q ss_pred             CCCCCC-cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVP-KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P-~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      ||+++| ++|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++.  .+     ...+|+.|+... +|++|
T Consensus       228 ~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~-~~~~~  299 (332)
T 3i53_A          228 FFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTYF-GGKER  299 (332)
T ss_dssp             TTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHHH-SCCCC
T ss_pred             CCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhhC-CCCCC
Confidence            357888 5699999999999999999999999999999999999999988876  22     246889998765 99999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++++++|||++
T Consensus       300 t~~e~~~ll~~aGf~~  315 (332)
T 3i53_A          300 SLAELGELAAQAGLAV  315 (332)
T ss_dssp             CHHHHHHHHHHTTEEE
T ss_pred             CHHHHHHHHHHCCCEE
Confidence            9999999999999975

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.82  E-value=3.6e-20  Score=130.58  Aligned_cols=94  Identities=33%  Similarity=0.585  Sum_probs=80.9

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPE---PGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK   77 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~---gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~   77 (96)
                      ||+++|.+|+|++++++|+|+|++|.++|++++++|+|   ||+++|.|.+.++....+........+|+.|+... +|+
T Consensus       245 ~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~  323 (358)
T 1zg3_A          245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LGK  323 (358)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SCC
T ss_pred             cCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CCC
Confidence            45778888999999999999999999999999999999   99999999998876543211224567899988755 899


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      +||.+||++++++|||++
T Consensus       324 ~~t~~e~~~ll~~aGf~~  341 (358)
T 1zg3_A          324 ERTKQEWEKLIYDAGFSS  341 (358)
T ss_dssp             CEEHHHHHHHHHHTTCCE
T ss_pred             CCCHHHHHHHHHHcCCCe
Confidence            999999999999999975

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.82  E-value=3.6e-20  Score=131.32  Aligned_cols=89  Identities=28%  Similarity=0.490  Sum_probs=78.9

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      ||+++|. +|+|++++++|+|+|+++.++|++++++|+|||+++|+|.+.++...+.     ...+|+.|+... +|++|
T Consensus       261 ~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-----~~~~d~~~~~~~-~g~~~  334 (369)
T 3gwz_A          261 FFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-----TLFVDLLLLVLV-GGAER  334 (369)
T ss_dssp             TTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-----HHHHHHHHHHHH-SCCCB
T ss_pred             CCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-----hhHhhHHHHhhc-CCccC
Confidence            4577884 6999999999999999999999999999999999999999998764321     457899998876 99999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++++++|||++
T Consensus       335 t~~e~~~ll~~aGf~~  350 (369)
T 3gwz_A          335 SESEFAALLEKSGLRV  350 (369)
T ss_dssp             CHHHHHHHHHTTTEEE
T ss_pred             CHHHHHHHHHHCCCeE
Confidence            9999999999999975

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.79  E-value=1.5e-19  Score=128.12  Aligned_cols=94  Identities=37%  Similarity=0.586  Sum_probs=80.2

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|.+|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+.++....+........+|+.|+... +|++||
T Consensus       261 ~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t  339 (372)
T 1fp1_D          261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERT  339 (372)
T ss_dssp             TTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             cccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccCC
Confidence            4567787899999999999999999999999999999999999999998876543322224567888888744 899999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++++++|||++
T Consensus       340 ~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          340 EKQYEKLSKLSGFSK  354 (372)
T ss_dssp             HHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHCCCce
Confidence            999999999999975

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.79  E-value=3.7e-19  Score=125.20  Aligned_cols=93  Identities=28%  Similarity=0.604  Sum_probs=79.3

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPE---PGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK   77 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~---gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~   77 (96)
                      ||+++|.+|+|++++++|+|+|+++.++|++++++|+|   ||+++|.|.+.++....+........+|+.|+. . +|+
T Consensus       240 ~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~  317 (352)
T 1fp2_A          240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGK  317 (352)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCC
T ss_pred             ccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCC
Confidence            45778888999999999999999999999999999999   999999999988765432111245678988887 5 699


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      +||.+||++++++|||++
T Consensus       318 ~~t~~e~~~ll~~aGf~~  335 (352)
T 1fp2_A          318 ERNEEEWKKLFIEAGFQH  335 (352)
T ss_dssp             CEEHHHHHHHHHHTTCCE
T ss_pred             CCCHHHHHHHHHHCCCCe
Confidence            999999999999999974

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.79  E-value=3.9e-19  Score=123.83  Aligned_cols=90  Identities=21%  Similarity=0.321  Sum_probs=78.4

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      +|+++|+ +|+|++++++|+|+++++.++|++++++|+|||+++|.|.+.++...+.    ....+|+.|+... +|++|
T Consensus       226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~  300 (334)
T 2ip2_A          226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSP----MSVLWDVHLFMAC-AGRHR  300 (334)
T ss_dssp             TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCH----HHHHHHHHHHHHH-SCCCC
T ss_pred             CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhHHhhhHhHhhC-CCcCC
Confidence            3567776 5999999999999999999999999999999999999999988754322    3567899888766 89999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++++++|||++
T Consensus       301 t~~e~~~ll~~aGf~~  316 (334)
T 2ip2_A          301 TTEEVVDLLGRGGFAV  316 (334)
T ss_dssp             BHHHHHHHHHHTTEEE
T ss_pred             CHHHHHHHHHHCCCce
Confidence            9999999999999974

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.79  E-value=3.2e-19  Score=125.01  Aligned_cols=88  Identities=8%  Similarity=0.026  Sum_probs=77.7

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHH
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEE   83 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e   83 (96)
                      .|+ +|+|++++++|+|+|+++.++|++++++|+|||+++|+|.+.++....+.   ....+|+.|+..+.+|++||.+|
T Consensus       245 ~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~e  321 (352)
T 3mcz_A          245 EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA---LSADFSLHMMVNTNHGELHPTPW  321 (352)
T ss_dssp             TTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH---HHHHHHHHHHHHSTTCCCCCHHH
T ss_pred             CCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc---hHHHhhHHHHhhCCCCCcCCHHH
Confidence            455 59999999999999999999999999999999999999999988755442   35678999987666899999999


Q ss_pred             HHHHHHhhCcCC
Q 034380           84 FKSLAIGLLNSV   95 (96)
Q Consensus        84 ~~~l~~~AG~~v   95 (96)
                      |++++++|||++
T Consensus       322 ~~~ll~~aGf~~  333 (352)
T 3mcz_A          322 IAGVVRDAGLAV  333 (352)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             HHHHHHHCCCce
Confidence            999999999975

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.77  E-value=1.3e-18  Score=123.05  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=72.8

Q ss_pred             CCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch-hhhhhhhhhhhhhhcCCCCccCCH
Q 034380            4 EVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDI-ISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         4 ~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~-~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      |+|+ +|+|++++++|+|+|+++.++|++++++|+|||+|+|+|.+.++....+. ........++.|+... +|++||.
T Consensus       244 ~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~  322 (363)
T 3dp7_A          244 PFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANG-NSKMFHS  322 (363)
T ss_dssp             CCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCS-SCCSCCH
T ss_pred             CCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCC-CCcccCH
Confidence            4774 59999999999999999999999999999999999999999887643221 1111123444555543 7999999


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      +||++++++|||++
T Consensus       323 ~e~~~ll~~AGf~~  336 (363)
T 3dp7_A          323 DDLIRCIENAGLEV  336 (363)
T ss_dssp             HHHHHHHHTTTEEE
T ss_pred             HHHHHHHHHcCCeE
Confidence            99999999999975

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.70  E-value=2.1e-17  Score=116.13  Aligned_cols=90  Identities=28%  Similarity=0.493  Sum_probs=77.1

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee-cCCCCCCchhhhhhhhhhhhhhhcCCCCcc
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI-MPEFPETDIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~-~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      +|+++|. +|+|++++++|+|+|+++.++|++++++|+|||+++|.|.+ .++.....    ....+|+.|+... +|+.
T Consensus       242 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~  316 (360)
T 1tw3_A          242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE----QFTELDLRMLVFL-GGAL  316 (360)
T ss_dssp             TTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH----HHHHHHHHHHHHH-SCCC
T ss_pred             CCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcc----hhhhccHHHhhhc-CCcC
Confidence            3567787 59999999999999999999999999999999999999998 66543322    3457788888765 8999


Q ss_pred             CCHHHHHHHHHhhCcCC
Q 034380           79 RTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v   95 (96)
                      ||.+||++++++|||++
T Consensus       317 ~t~~e~~~ll~~aGf~~  333 (360)
T 1tw3_A          317 RTREKWDGLAASAGLVV  333 (360)
T ss_dssp             CBHHHHHHHHHHTTEEE
T ss_pred             CCHHHHHHHHHHCCCeE
Confidence            99999999999999975

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.69  E-value=7.6e-17  Score=111.94  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=77.2

Q ss_pred             CCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHH
Q 034380            4 EVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLE   82 (96)
Q Consensus         4 ~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~   82 (96)
                      ++|. .|+|++++++|+|+++++.++|++++++|+|||+++|+|...++....+.   ....+|+.|+..+.+|+.||.+
T Consensus       228 ~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~  304 (335)
T 2r3s_A          228 DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLATTPNGDAYTFA  304 (335)
T ss_dssp             CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHHHSSSCCCCCHH
T ss_pred             CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHeeCCCCCcCCHH
Confidence            5666 59999999999999999999999999999999999999998876543332   3567888888766689999999


Q ss_pred             HHHHHHHhhCcCC
Q 034380           83 EFKSLAIGLLNSV   95 (96)
Q Consensus        83 e~~~l~~~AG~~v   95 (96)
                      ||++++++|||++
T Consensus       305 ~~~~ll~~aGf~~  317 (335)
T 2r3s_A          305 EYESMFSNAGFSH  317 (335)
T ss_dssp             HHHHHHHHTTCSE
T ss_pred             HHHHHHHHCCCCe
Confidence            9999999999974

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.68  E-value=3.6e-17  Score=115.29  Aligned_cols=90  Identities=24%  Similarity=0.457  Sum_probs=73.3

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee--ecCCCCCCchhhhhhhhhhhhhhhcCCCCc
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES--IMPEFPETDIISKNISRLHITVSNLFPGAK   77 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~   77 (96)
                      +|+++|. .|+|++++++|+|+++++.++|++++++|+|||+++|.|.  +.++....    .....+|+.|+... +|+
T Consensus       241 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~  315 (374)
T 1qzz_A          241 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFM-GGR  315 (374)
T ss_dssp             TTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------H----HHHHHHHHHHHHHH-SCC
T ss_pred             CCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCc----chhhhcchHHHHhC-CCc
Confidence            3467887 5999999999999999999999999999999999999999  87654322    23457888888765 899


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      .||.++|++++++|||++
T Consensus       316 ~~~~~~~~~ll~~aGf~~  333 (374)
T 1qzz_A          316 VRTRDEVVDLAGSAGLAL  333 (374)
T ss_dssp             CCCHHHHHHHHHTTTEEE
T ss_pred             CCCHHHHHHHHHHCCCce
Confidence            999999999999999975

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.65  E-value=4.5e-16  Score=109.58  Aligned_cols=86  Identities=13%  Similarity=0.138  Sum_probs=70.6

Q ss_pred             CCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCcc----C
Q 034380            4 EVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKE----R   79 (96)
Q Consensus         4 ~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~----R   79 (96)
                      ++|++|+|++++++|+|+|+++.++|++++++|+|||+++|+|.+.++. ..+.   +...+  .|+..+.+|++    |
T Consensus       253 ~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~---~~~~~--~~~~~~~~g~~~~~~~  326 (359)
T 1x19_A          253 SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPN---FDYLS--HYILGAGMPFSVLGFK  326 (359)
T ss_dssp             CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCC---HHHHH--HHGGGGGSSCCCCCCC
T ss_pred             CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCch---HHHHH--HHHHhcCCCCcccCCC
Confidence            4666799999999999999999999999999999999999999988765 2222   22333  44443436888    9


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++++++|||++
T Consensus       327 t~~e~~~ll~~aGf~~  342 (359)
T 1x19_A          327 EQARYKEILESLGYKD  342 (359)
T ss_dssp             CGGGHHHHHHHHTCEE
T ss_pred             CHHHHHHHHHHCCCce
Confidence            9999999999999974

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.97  E-value=7e-10  Score=75.56  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh-------------
Q 034380            5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN-------------   71 (96)
Q Consensus         5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~-------------   71 (96)
                      ++++|++++..++|.+++++-.++|++++++|+|||+++|.|.+..++...... ......++....             
T Consensus       137 ~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~  215 (261)
T 4gek_A          137 IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSM  215 (261)
T ss_dssp             CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHH
T ss_pred             ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhh
Confidence            345699999999999999999999999999999999999999987765321100 000001110000             


Q ss_pred             cCCCCccCCHHHHHHHHHhhCcC
Q 034380           72 LFPGAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        72 ~~~~g~~Rt~~e~~~l~~~AG~~   94 (96)
                      ...--...|.+++.++|++|||+
T Consensus       216 l~~~~~~~s~~~~~~~L~~AGF~  238 (261)
T 4gek_A          216 LENVMLTDSVETHKARLHKAGFE  238 (261)
T ss_dssp             HHHHCCCBCHHHHHHHHHHHTCS
T ss_pred             hcccccCCCHHHHHHHHHHcCCC
Confidence            00012357899999999999986

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.96  E-value=2.3e-09  Score=73.30  Aligned_cols=80  Identities=19%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      +.|++++..++|+++|++..++|++++++|+|||+++|.+...+.   +..   .....+....... .++.||.+|+++
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~s~~ei~~  229 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-EGWARTPEEIER  229 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-CCCCBCHHHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-CCccCCHHHHHH
Confidence            459999999999999999999999999999999999999987542   111   1222332222223 577899999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      +|  +||++
T Consensus       230 ~l--~G~~l  236 (274)
T 2qe6_A          230 QF--GDFEL  236 (274)
T ss_dssp             TT--TTCEE
T ss_pred             Hh--CCCeE
Confidence            99  58764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.94  E-value=1.4e-09  Score=71.62  Aligned_cols=86  Identities=13%  Similarity=0.028  Sum_probs=61.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhh-------------hhhhcCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHI-------------TVSNLFP   74 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl-------------~ml~~~~   74 (96)
                      .|++++..++|++++++..++|+++++.|+|||+++|.+...++.....  ......+.-             ..+....
T Consensus       110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (234)
T 3dtn_A          110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE--NLNKTIWRQYVENSGLTEEEIAAGYERSK  187 (234)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH--HHHHHHHHHHHHTSSCCHHHHHTTC----
T ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh--hHHHHHHHHHHHhcCCCHHHHHHHHHhcc
Confidence            4999999999999999999999999999999999999998876542110  000001100             0001112


Q ss_pred             CCccCCHHHHHHHHHhhCcCC
Q 034380           75 GAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        75 ~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ..+.+|.++|.+++++|||++
T Consensus       188 ~~~~~~~~~~~~ll~~aGF~~  208 (234)
T 3dtn_A          188 LDKDIEMNQQLNWLKEAGFRD  208 (234)
T ss_dssp             CCCCCBHHHHHHHHHHTTCEE
T ss_pred             cccccCHHHHHHHHHHcCCCc
Confidence            567789999999999999974

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.89  E-value=4.2e-09  Score=71.39  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-----CchhhhhhhhhhhhhhhcCCCCcc
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPE-----TDIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-----~~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      +|. .|+++...++|++++++..++|+++++.|+|||+++|.+...++...     .+.........+...-...+++..
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (287)
T 1kpg_A          126 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  205 (287)
T ss_dssp             CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             CCCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence            443 49999999999998888899999999999999999999987664211     000000011111111112347888


Q ss_pred             CCHHHHHHHHHhhCcCC
Q 034380           79 RTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v   95 (96)
                      +|.++|.+++++|||++
T Consensus       206 ~s~~~~~~~l~~aGf~~  222 (287)
T 1kpg_A          206 PSIPMVQECASANGFTV  222 (287)
T ss_dssp             CCHHHHHHHHHTTTCEE
T ss_pred             CCHHHHHHHHHhCCcEE
Confidence            89999999999999975

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.88  E-value=6.3e-09  Score=67.76  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhh---hhhhhh-cCCCCccCCHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRL---HITVSN-LFPGAKERTLEE   83 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~---dl~ml~-~~~~g~~Rt~~e   83 (96)
                      .|++++..++|++++.+..++|+++++.|+|||.++|.+...+......   .....+   ....+. ........|.++
T Consensus       107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYD---KTVEAAKQRGFHQLANDLQTEYYTRIPV  183 (220)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHH---HHHHHHHHTTCHHHHHHHHHSCCCBHHH
T ss_pred             eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHH---HHHHHHHhCCCccchhhcchhhcCCHHH
Confidence            4999999999999999988899999999999999999997665432110   000000   000000 000123458999


Q ss_pred             HHHHHHhhCcCC
Q 034380           84 FKSLAIGLLNSV   95 (96)
Q Consensus        84 ~~~l~~~AG~~v   95 (96)
                      |++++++|||+|
T Consensus       184 ~~~~l~~aGf~v  195 (220)
T 3hnr_A          184 MQTIFENNGFHV  195 (220)
T ss_dssp             HHHHHHHTTEEE
T ss_pred             HHHHHHHCCCEE
Confidence            999999999976

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.88  E-value=3.2e-09  Score=70.43  Aligned_cols=74  Identities=20%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|++++++..++|+++++.|+|||+++|.+........         ..+     ...+...||.++|+++
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~  224 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHH
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHH
Confidence            49999999999999999999999999999999999999975543211         111     1124557899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||++
T Consensus       225 l~~aGf~~  232 (254)
T 1xtp_A          225 FNESGVRV  232 (254)
T ss_dssp             HHHHTCCE
T ss_pred             HHHCCCEE
Confidence            99999975

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.86  E-value=3.3e-09  Score=68.71  Aligned_cols=85  Identities=14%  Similarity=0.018  Sum_probs=58.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCC-------ccCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGA-------KERT   80 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g-------~~Rt   80 (96)
                      .|++++..++|++++++..++|+++++.|+|||++++.+...+..........  ...... ......+       +..|
T Consensus       108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  184 (218)
T 3ou2_A          108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAV-RRTLQDGRSFRIVKVFRS  184 (218)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEE-EEECTTSCEEEEECCCCC
T ss_pred             eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccce-eeecCCcchhhHhhcCCC
Confidence            49999999999999999999999999999999999999986643221100000  000000 0001122       2459


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .++|.+++++|||+|
T Consensus       185 ~~~~~~~l~~aGf~v  199 (218)
T 3ou2_A          185 PAELTERLTALGWSC  199 (218)
T ss_dssp             HHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCEE
Confidence            999999999999975

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.84  E-value=4.2e-09  Score=70.48  Aligned_cols=80  Identities=9%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh-hhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH-ITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d-l~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|+++...++|+++|.  .++|+++++.|+|||++++.+...++..   ..   ..++. +..+....+.+.++.++|.+
T Consensus       104 fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (260)
T 1vl5_A          104 FHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---AF---DVFYNYVEKERDYSHHRAWKKSDWLK  175 (260)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             EEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---HH---HHHHHHHHHhcCccccCCCCHHHHHH
Confidence            3999999999999986  5889999999999999999998766531   11   11111 11122222567889999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      +++++||.+
T Consensus       176 ~l~~aGf~~  184 (260)
T 1vl5_A          176 MLEEAGFEL  184 (260)
T ss_dssp             HHHHHTCEE
T ss_pred             HHHHCCCeE
Confidence            999999975

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.84  E-value=3.5e-08  Score=67.85  Aligned_cols=91  Identities=16%  Similarity=0.276  Sum_probs=64.9

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-----chhhhhhhhhhhhhhhcCCCCcc
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPET-----DIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-----~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      +|. .|+++...++|++++++..++|+++++.|+|||+++|.+...++....     +.........+...-...+++..
T Consensus       152 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (318)
T 2fk8_A          152 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL  231 (318)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred             CCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence            444 499999999999998889999999999999999999999877653110     00000000111111112337888


Q ss_pred             CCHHHHHHHHHhhCcCC
Q 034380           79 RTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v   95 (96)
                      +|.+++.++++++||++
T Consensus       232 ~s~~~~~~~l~~aGf~~  248 (318)
T 2fk8_A          232 PSTEMMVEHGEKAGFTV  248 (318)
T ss_dssp             CCHHHHHHHHHHTTCBC
T ss_pred             CCHHHHHHHHHhCCCEE
Confidence            99999999999999986

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.80  E-value=1.5e-08  Score=67.44  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|++++++..++|+++++.|+|||+++|.+...++.....  ..+...     .... +...+|.++|.++
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~-----~~~~-~~~~~~~~~~~~~  192 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD--DEFKEY-----VKQR-KYTLITVEEYADI  192 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC--HHHHHH-----HHHH-TCCCCCHHHHHHH
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch--HHHHHH-----HhcC-CCCCCCHHHHHHH
Confidence            4999999999999999999999999999999999999998776521111  001111     1112 4567899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       193 l~~~Gf~~  200 (266)
T 3ujc_A          193 LTACNFKN  200 (266)
T ss_dssp             HHHTTCEE
T ss_pred             HHHcCCeE
Confidence            99999964

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.78  E-value=2.1e-08  Score=66.50  Aligned_cols=80  Identities=16%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh-hhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH-ITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d-l~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|++++..++|+|+|.  .++|+++++.|+|||++++.+...++..   ..   ...+. +..+....+.+.++.++|.+
T Consensus        88 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (239)
T 1xxl_A           88 FDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VL---DEFVNHLNRLRDPSHVRESSLSEWQA  159 (239)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             EEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---hH---HHHHHHHHHhccccccCCCCHHHHHH
Confidence            3999999999999875  6889999999999999999998776431   11   11111 11222222567899999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      +++++||.+
T Consensus       160 ll~~aGf~~  168 (239)
T 1xxl_A          160 MFSANQLAY  168 (239)
T ss_dssp             HHHHTTEEE
T ss_pred             HHHHCCCcE
Confidence            999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.78  E-value=6.9e-09  Score=68.79  Aligned_cols=73  Identities=19%  Similarity=0.327  Sum_probs=60.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++++..++|+++++.|+|||+++|.+...+.   ..       .++     ...+...|+.++|.++
T Consensus       147 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~-------~~~-----~~~~~~~~~~~~~~~~  211 (241)
T 2ex4_A          147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE---GV-------ILD-----DVDSSVCRDLDVVRRI  211 (241)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS---SE-------EEE-----TTTTEEEEBHHHHHHH
T ss_pred             EEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC---cc-------eec-----ccCCcccCCHHHHHHH
Confidence            49999999999999998899999999999999999999987765   11       111     1124556799999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       212 l~~aGf~~  219 (241)
T 2ex4_A          212 ICSAGLSL  219 (241)
T ss_dssp             HHHTTCCE
T ss_pred             HHHcCCeE
Confidence            99999975

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.76  E-value=4.4e-08  Score=64.85  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=61.1

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      ++|.  .|++++..++|++++++..++|+++++.|+|||+++|......    ..     ....+.. .. ..+....+.
T Consensus        96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~-----~~~~~~~-~~-~~~~~~~~~  164 (240)
T 3dli_A           96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT----SL-----YSLINFY-ID-PTHKKPVHP  164 (240)
T ss_dssp             TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT----SH-----HHHHHHT-TS-TTCCSCCCH
T ss_pred             hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc----hh-----HHHHHHh-cC-ccccccCCH
Confidence            4554  4999999999999999899999999999999999999765422    11     0111111 11 225678899


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      +++.++++++||++
T Consensus       165 ~~l~~~l~~aGf~~  178 (240)
T 3dli_A          165 ETLKFILEYLGFRD  178 (240)
T ss_dssp             HHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHCCCeE
Confidence            99999999999975

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.75  E-value=2e-08  Score=67.38  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=60.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|++++.  .++|+++++.|+|||+++|.+...........    ...++-..... .++..+|.++|.++
T Consensus       130 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~  202 (273)
T 3bus_A          130 FDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAK----KEAVDAFRAGG-GVLSLGGIDEYESD  202 (273)
T ss_dssp             EEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHH----HHHHHHHHHHH-TCCCCCCHHHHHHH
T ss_pred             ccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhH----HHHHHHHHhhc-CccCCCCHHHHHHH
Confidence            3999999999999886  78899999999999999999987765332111    11111111112 36788999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       203 l~~aGf~~  210 (273)
T 3bus_A          203 VRQAELVV  210 (273)
T ss_dssp             HHHTTCEE
T ss_pred             HHHcCCeE
Confidence            99999975

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.73  E-value=4.2e-08  Score=66.73  Aligned_cols=78  Identities=15%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++  ..++|+++++.|+|||++++.+...++......   ....++.   . . .....|.++|.++
T Consensus       151 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~---~-~-~~~~~~~~~~~~~  220 (297)
T 2o57_A          151 YDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILDR---I-K-LHDMGSLGLYRSL  220 (297)
T ss_dssp             EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHHH---H-T-CSSCCCHHHHHHH
T ss_pred             EeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHHH---h-c-CCCCCCHHHHHHH
Confidence            399999999999998  589999999999999999999988765432211   1112211   1 1 2345799999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||++
T Consensus       221 l~~aGf~~  228 (297)
T 2o57_A          221 AKECGLVT  228 (297)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCeE
Confidence            99999975

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.70  E-value=3.4e-08  Score=64.44  Aligned_cols=85  Identities=14%  Similarity=-0.014  Sum_probs=58.6

Q ss_pred             ceEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc--------------
Q 034380            8 AQTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL--------------   72 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~--------------   72 (96)
                      .|++++..++|++++. +..++|+++++.|+|||++++.+...+...  +... .....++.....              
T Consensus       102 ~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (235)
T 3sm3_A          102 FDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYR-KRYLHDFPITKEEGSFLARDPETGET  178 (235)
T ss_dssp             EEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHH-HHHHHHHHHHCSTTEEEEECTTTCCE
T ss_pred             eeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHH-HHhhhhccchhhhcceEecccccCCc
Confidence            4999999999999764 466899999999999999999997654322  1110 001111111100              


Q ss_pred             CCCCccCCHHHHHHHHHhhCcCC
Q 034380           73 FPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        73 ~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ....+.+|.++|++++++|||++
T Consensus       179 ~~~~~~~~~~~l~~ll~~aGf~~  201 (235)
T 3sm3_A          179 EFIAHHFTEKELVFLLTDCRFEI  201 (235)
T ss_dssp             EEEEECBCHHHHHHHHHTTTEEE
T ss_pred             ceeeEeCCHHHHHHHHHHcCCEE
Confidence            00235789999999999999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.69  E-value=1.2e-08  Score=65.73  Aligned_cols=74  Identities=15%  Similarity=0.029  Sum_probs=59.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++++..++|+++++.|+|||+++|.+...+...  .       ...     .......+|.++|.++
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~-------~~~-----~~~~~~~~~~~~~~~~  168 (203)
T 3h2b_A          103 WAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLE--P-------MYH-----PVATAYRWPLPELAQA  168 (203)
T ss_dssp             EEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCE--E-------ECC-----SSSCEEECCHHHHHHH
T ss_pred             eEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchh--h-------hhc-----hhhhhccCCHHHHHHH
Confidence            4999999999999988899999999999999999999886544311  0       000     1114567899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       169 l~~~Gf~~  176 (203)
T 3h2b_A          169 LETAGFQV  176 (203)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCcE
Confidence            99999975

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.68  E-value=2.9e-08  Score=65.46  Aligned_cols=69  Identities=12%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|.+++++..++|+++++.|+|||++++.+....+....+                   -...+.++|.++
T Consensus       133 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~  193 (235)
T 3lcc_A          133 FDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP-------------------PYKVDVSTFEEV  193 (235)
T ss_dssp             EEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS-------------------SCCCCHHHHHHH
T ss_pred             eeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC-------------------CccCCHHHHHHH
Confidence            4999999999999998999999999999999999999887554332111                   112688999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       194 l~~~Gf~~  201 (235)
T 3lcc_A          194 LVPIGFKA  201 (235)
T ss_dssp             HGGGTEEE
T ss_pred             HHHcCCeE
Confidence            99999875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.63  E-value=8e-08  Score=60.82  Aligned_cols=64  Identities=16%  Similarity=0.008  Sum_probs=51.0

Q ss_pred             ceEeEecccccCC-ChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDW-GDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~-~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|+++...++|++ +|.  .++|+++++.|+|||++++.+.......                   . ....|+.++|.+
T Consensus        64 fD~V~~~~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~-------------------~-~~~~~~~~~~~~  121 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD-------------------N-NSKVKTASKLCS  121 (176)
T ss_dssp             EEEEEECCSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC-------------------S-SSSSCCHHHHHH
T ss_pred             EeEEEECChhhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc-------------------c-ccccCCHHHHHH
Confidence            4999999999998 654  7899999999999999999665433211                   0 233478999999


Q ss_pred             HHHhhCc
Q 034380           87 LAIGLLN   93 (96)
Q Consensus        87 l~~~AG~   93 (96)
                      ++++|||
T Consensus       122 ~l~~aGf  128 (176)
T 2ld4_A          122 ALTLSGL  128 (176)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCCC
Confidence            9999998

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.63  E-value=5.7e-08  Score=62.99  Aligned_cols=73  Identities=12%  Similarity=-0.059  Sum_probs=57.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++++..++|+++++.|+|||++++...........        ..       ...-..+|.++|+++
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~  167 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRAR  167 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHH
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHH
Confidence            499999999999999999999999999999999999985433321100        00       012345799999999


Q ss_pred             HHhhC-cCC
Q 034380           88 AIGLL-NSV   95 (96)
Q Consensus        88 ~~~AG-~~v   95 (96)
                      ++++| |++
T Consensus       168 l~~aG~f~~  176 (211)
T 3e23_A          168 YAEAGTWAS  176 (211)
T ss_dssp             HHHHCCCSE
T ss_pred             HHhCCCcEE
Confidence            99999 875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.62  E-value=1.1e-07  Score=62.57  Aligned_cols=78  Identities=14%  Similarity=-0.037  Sum_probs=57.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|++++.  .++|+++++.|+|||+++|.+..........   .+...+.    . .......+.+++.++
T Consensus       117 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---~~~~~~~----~-~~~~~~~~~~~~~~~  186 (242)
T 3l8d_A          117 FEAIMAINSLEWTEEP--LRALNEIKRVLKSDGYACIAILGPTAKPREN---SYPRLYG----K-DVVCNTMMPWEFEQL  186 (242)
T ss_dssp             EEEEEEESCTTSSSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGGG---GGGGGGT----C-CCSSCCCCHHHHHHH
T ss_pred             ccEEEEcChHhhccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhhh---hhhhhcc----c-cccccCCCHHHHHHH
Confidence            4999999999999875  5889999999999999999986443321111   1111111    1 125667899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       187 l~~~Gf~~  194 (242)
T 3l8d_A          187 VKEQGFKV  194 (242)
T ss_dssp             HHHTTEEE
T ss_pred             HHHcCCEE
Confidence            99999975

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.62  E-value=8.7e-09  Score=66.56  Aligned_cols=85  Identities=16%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhh-hhhhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISR-LHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~-~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|++++..++|++++.  .++|+++++.|+|||+++|.+...++............. ......... +...+|.++|.+
T Consensus       112 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  188 (219)
T 3dlc_A          112 ADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRK-NISQENVERFQN  188 (219)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHH-HSSHHHHHHHHH
T ss_pred             ccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhh-ccccCCHHHHHH
Confidence            4999999999999764  679999999999999999988654432110000000000 000011111 355668899999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      ++++|||++
T Consensus       189 ~l~~aGf~~  197 (219)
T 3dlc_A          189 VLDEIGISS  197 (219)
T ss_dssp             HHHHHTCSS
T ss_pred             HHHHcCCCe
Confidence            999999975

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.61  E-value=1.2e-07  Score=67.29  Aligned_cols=83  Identities=13%  Similarity=0.098  Sum_probs=62.5

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCH
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      ++|.  .|+++...++|.++|.  .++|+++++.|+|||++++.+...+......      ...+....... .+..++.
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~  231 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSEA------AQQDPILYGEC-LGGALYL  231 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCHH------HHHCHHHHHTT-CTTCCBH
T ss_pred             CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCHh------HhhhHHHhhcc-cccCCCH
Confidence            4554  4999999999999885  6899999999999999999998776432211      11122222223 5778899


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++|.++++++||++
T Consensus       232 ~~~~~ll~~aGF~~  245 (383)
T 4fsd_A          232 EDFRRLVAEAGFRD  245 (383)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHCCCce
Confidence            99999999999974

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.60  E-value=1.8e-07  Score=63.94  Aligned_cols=88  Identities=14%  Similarity=0.305  Sum_probs=62.7

Q ss_pred             ceEeEecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhh-----hhhhhhhhhhhhcCCC
Q 034380            8 AQTIFMKWVLHDWGD-------DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIIS-----KNISRLHITVSNLFPG   75 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-------~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~-----~~~~~~dl~ml~~~~~   75 (96)
                      .|+++...++|+++|       +...++++++++.|+|||+++|.+...++........     ......+...-...++
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  217 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG  217 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence            499999999999944       6788999999999999999999998776432100000     0000012211122347


Q ss_pred             CccCCHHHHHHHHHhhCcCC
Q 034380           76 AKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        76 g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      |..+|.+++.++++++||++
T Consensus       218 ~~~~s~~~~~~~l~~aGf~~  237 (302)
T 3hem_A          218 GRLPRISQVDYYSSNAGWKV  237 (302)
T ss_dssp             CCCCCHHHHHHHHHHHTCEE
T ss_pred             CCCCCHHHHHHHHHhCCcEE
Confidence            89999999999999999975

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.59  E-value=5.8e-08  Score=65.30  Aligned_cols=82  Identities=20%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC---CCCchhhhhhhhhhhh--hhhcCCCCccCCHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF---PETDIISKNISRLHIT--VSNLFPGAKERTLE   82 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~---~~~~~~~~~~~~~dl~--ml~~~~~g~~Rt~~   82 (96)
                      .|++++..++|+++|..  .+|+++++.|+|||.+++.+......   +..+.   ....+...  ..... ++..++..
T Consensus       106 fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~  179 (276)
T 3mgg_A          106 FDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKK---AIEAWNCLIRVQAYM-KGNSLVGR  179 (276)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHH---HHHHHHHHHHHHHHT-TCCTTGGG
T ss_pred             eeEEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHH---HHHHHHHHHHHHHhc-CCCcchHH
Confidence            49999999999999874  88999999999999999998643221   11111   11111111  11222 67788999


Q ss_pred             HHHHHHHhhCcCC
Q 034380           83 EFKSLAIGLLNSV   95 (96)
Q Consensus        83 e~~~l~~~AG~~v   95 (96)
                      ++.++|++|||++
T Consensus       180 ~l~~~l~~aGf~~  192 (276)
T 3mgg_A          180 QIYPLLQESGFEK  192 (276)
T ss_dssp             GHHHHHHHTTCEE
T ss_pred             HHHHHHHHCCCCe
Confidence            9999999999975

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.56  E-value=1.8e-07  Score=63.77  Aligned_cols=80  Identities=13%  Similarity=-0.140  Sum_probs=55.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|+++|.  .+.|+++++.|+|||+++|.+...+    ......+...+..  +........+|.++|.++
T Consensus       136 fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  207 (292)
T 2aot_A          136 WDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SGWDKLWKKYGSR--FPQDDLCQYITSDDLTQM  207 (292)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SHHHHHHHHHGGG--SCCCTTCCCCCHHHHHHH
T ss_pred             eeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCC----ccHHHHHHHHHHh--ccCCCcccCCCHHHHHHH
Confidence            4999999999999986  5789999999999999999965321    1111001111110  000012456899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |+++||++
T Consensus       208 l~~aGf~~  215 (292)
T 2aot_A          208 LDNLGLKY  215 (292)
T ss_dssp             HHHHTCCE
T ss_pred             HHHCCCce
Confidence            99999975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.54  E-value=4.4e-08  Score=64.29  Aligned_cols=45  Identities=11%  Similarity=0.013  Sum_probs=36.8

Q ss_pred             ceEeEe-cccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380            8 AQTIFM-KWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus         8 ~D~~ll-~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      .|++++ ..++|++++ ++..++|+++++.|+|||++++.+...++.
T Consensus       101 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  147 (239)
T 3bxo_A          101 FSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET  147 (239)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTT
T ss_pred             CcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCccc
Confidence            499994 558888754 778999999999999999999987665543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.54  E-value=3.7e-08  Score=65.95  Aligned_cols=44  Identities=11%  Similarity=0.086  Sum_probs=37.1

Q ss_pred             ceEeEecc-cccCCCh-HHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKW-VLHDWGD-DLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~-vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|++++.. ++|++++ ++..++|+++++.|+|||+++|.+...++
T Consensus       111 fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  156 (263)
T 3pfg_A          111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPE  156 (263)
T ss_dssp             EEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             cCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence            49999997 9999965 67789999999999999999997654443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.53  E-value=2.3e-07  Score=63.83  Aligned_cols=78  Identities=5%  Similarity=-0.084  Sum_probs=58.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|+++   ..++|+++++.|+|||++++.+....+.......  ....++  ...   ....+|.++|.++
T Consensus       186 fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~--~~~~~~--~~~---~~~~~s~~~~~~~  255 (312)
T 3vc1_A          186 VTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSK--WVSQIN--AHF---ECNIHSRREYLRA  255 (312)
T ss_dssp             EEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCH--HHHHHH--HHH---TCCCCBHHHHHHH
T ss_pred             EeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhH--HHHHHH--hhh---cCCCCCHHHHHHH
Confidence            49999999999994   7899999999999999999999877764322110  111111  111   2247899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||++
T Consensus       256 l~~aGf~~  263 (312)
T 3vc1_A          256 MADNRLVP  263 (312)
T ss_dssp             HHTTTEEE
T ss_pred             HHHCCCEE
Confidence            99999975

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.53  E-value=4.3e-07  Score=62.25  Aligned_cols=88  Identities=13%  Similarity=-0.030  Sum_probs=56.9

Q ss_pred             ceEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCch------hhh-hhhhhh--hhhhhcCCCCc
Q 034380            8 AQTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVVESIMPEFPETDI------ISK-NISRLH--ITVSNLFPGAK   77 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~------~~~-~~~~~d--l~ml~~~~~g~   77 (96)
                      .|++++..++|++++. .+.++++++++.|+|||+++|.+...++......      ... ......  +..........
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNA  267 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhc
Confidence            4999999999999654 4567999999999999999998876554322110      000 000000  00111110114


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      .+|.+++.+++++|||++
T Consensus       268 ~~~~~~~~~~l~~aGF~~  285 (305)
T 3ocj_A          268 LRTHAQTRAQLEEAGFTD  285 (305)
T ss_dssp             CCCHHHHHHHHHHTTCEE
T ss_pred             cCCHHHHHHHHHHCCCEE
Confidence            489999999999999975

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.52  E-value=1.5e-07  Score=62.42  Aligned_cols=78  Identities=13%  Similarity=-0.038  Sum_probs=59.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|+++|  ..++|+++++.|+|||+++|.+...........   ....+    .. ......+|.++|.++
T Consensus       104 fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~---~~~~~----~~-~~~~~~~~~~~~~~~  173 (256)
T 1nkv_A          104 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE---IAQAC----GV-SSTSDFLTLPGLVGA  173 (256)
T ss_dssp             EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH---HHHTT----TC-SCGGGSCCHHHHHHH
T ss_pred             CCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH---HHHHH----hc-ccccccCCHHHHHHH
Confidence            499999999999986  478899999999999999999987665432211   11111    11 114567899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       174 l~~aGf~~  181 (256)
T 1nkv_A          174 FDDLGYDV  181 (256)
T ss_dssp             HHTTTBCC
T ss_pred             HHHCCCee
Confidence            99999986

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.52  E-value=2.6e-07  Score=60.01  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++.  .++|+++++.|+|||+++|.+....+....+                 .....++.++|.++
T Consensus       107 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~  167 (219)
T 3dh0_A          107 VDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGLI  167 (219)
T ss_dssp             EEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHHH
T ss_pred             eeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHHH
Confidence            4999999999999874  7899999999999999999997666542211                 12334689999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       168 l~~~Gf~~  175 (219)
T 3dh0_A          168 LEDAGIRV  175 (219)
T ss_dssp             HHHTTCEE
T ss_pred             HHHCCCEE
Confidence            99999974

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.50  E-value=9e-07  Score=59.30  Aligned_cols=86  Identities=8%  Similarity=-0.081  Sum_probs=56.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh--hh---cCCCCccCCHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV--SN---LFPGAKERTLE   82 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m--l~---~~~~g~~Rt~~   82 (96)
                      .|++++..++|++++...  +++.++..++|||++++.+...+................-..  ..   .......+|.+
T Consensus       123 fD~v~~~~~l~~~~~~~~--~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  200 (275)
T 3bkx_A          123 FDRVVLAHSLWYFASANA--LALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPD  200 (275)
T ss_dssp             CSEEEEESCGGGSSCHHH--HHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHH
T ss_pred             EEEEEEccchhhCCCHHH--HHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHH
Confidence            499999999999998754  777777778889999999988765532110000000000000  00   01012468999


Q ss_pred             HHHHHHHhhCcCC
Q 034380           83 EFKSLAIGLLNSV   95 (96)
Q Consensus        83 e~~~l~~~AG~~v   95 (96)
                      ++.+++++|||++
T Consensus       201 ~l~~~l~~aGf~~  213 (275)
T 3bkx_A          201 TLAQIAHDNTWTY  213 (275)
T ss_dssp             HHHHHHHHHTCEE
T ss_pred             HHHHHHHHCCCee
Confidence            9999999999975

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.49  E-value=1.9e-07  Score=61.18  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=56.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHH-HhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhh---------hhhhcCCCCc
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCY-DALPEPGKIIVVESIMPEFPETDIISKNISRLHI---------TVSNLFPGAK   77 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~-~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl---------~ml~~~~~g~   77 (96)
                      .|++++.+++|+++|.  .++|++++ +.|+|||+++|.+......   .  .........         .-.. ..+.+
T Consensus       104 fD~v~~~~~l~~~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~  175 (250)
T 2p7i_A          104 YDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAV---S--RQIAVKMGIISHNSAVTEAEFA-HGHRC  175 (250)
T ss_dssp             EEEEEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCH---H--HHHHHHTTSSSSTTCCCHHHHH-TTCCC
T ss_pred             ccEEEEhhHHHhhcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHH---H--HHHHHHcCccccchhccccccc-ccccc
Confidence            4999999999999886  68999999 9999999999987533211   0  000000000         0001 12567


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      .+|.+++.++++++||++
T Consensus       176 ~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          176 TYALDTLERDASRAGLQV  193 (250)
T ss_dssp             CCCHHHHHHHHHHTTCEE
T ss_pred             cCCHHHHHHHHHHCCCeE
Confidence            889999999999999975

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.42  E-value=4.9e-07  Score=59.95  Aligned_cols=76  Identities=9%  Similarity=-0.099  Sum_probs=56.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|+++   -.++|+++++.|+|||+++|.+...........   ....+.   -  . ....+|.++|.++
T Consensus       115 fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~---~~~~~~---~--~-~~~~~~~~~~~~~  182 (257)
T 3f4k_A          115 LDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE---IEDFWM---D--A-YPEISVIPTCIDK  182 (257)
T ss_dssp             EEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH---HHHHHH---H--H-CTTCCBHHHHHHH
T ss_pred             EEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH---HHHHHH---H--h-CCCCCCHHHHHHH
Confidence            49999999999994   467899999999999999999986554332211   111111   1  1 2447899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||++
T Consensus       183 l~~aGf~~  190 (257)
T 3f4k_A          183 MERAGYTP  190 (257)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCeE
Confidence            99999875

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.40  E-value=6.3e-07  Score=58.52  Aligned_cols=80  Identities=18%  Similarity=0.038  Sum_probs=55.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++.  .++|+++++.|+|||++++.+...+    .+....+... . .......+...+|.++|.++
T Consensus       103 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~----~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~  174 (219)
T 1vlm_A          103 FDFALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRE----SFLGREYEKN-K-EKSVFYKNARFFSTEELMDL  174 (219)
T ss_dssp             EEEEEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSS----SHHHHHHHHT-T-TC-CCSTTCCCCCHHHHHHH
T ss_pred             eeEEEEcchHhhccCH--HHHHHHHHHHcCCCcEEEEEEeCCc----cHHHHHHHHH-h-cCcchhcccccCCHHHHHHH
Confidence            4999999999999875  6899999999999999999876432    1111001000 0 00011124567899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       175 l~~~Gf~~  182 (219)
T 1vlm_A          175 MRKAGFEE  182 (219)
T ss_dssp             HHHTTCEE
T ss_pred             HHHCCCeE
Confidence            99999975

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.37  E-value=9.4e-07  Score=57.46  Aligned_cols=80  Identities=14%  Similarity=0.017  Sum_probs=54.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH--
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK--   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~--   85 (96)
                      .|++++..++|++++++..++|+++++.|+|||.+++.........-.       ......+.. ..+....|.++++  
T Consensus       103 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l~~~  174 (219)
T 3jwg_A          103 YDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG-------NLFEGNLRH-RDHRFEWTRKEFQTW  174 (219)
T ss_dssp             CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC-------CT-----GG-GCCTTSBCHHHHHHH
T ss_pred             CCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc-------ccCcccccc-cCceeeecHHHHHHH
Confidence            599999999999999999999999999999999555444311110000       000000111 1255667999999  


Q ss_pred             --HHHHhhCcCC
Q 034380           86 --SLAIGLLNSV   95 (96)
Q Consensus        86 --~l~~~AG~~v   95 (96)
                        ++++++|++|
T Consensus       175 ~~~l~~~~Gf~v  186 (219)
T 3jwg_A          175 AVKVAEKYGYSV  186 (219)
T ss_dssp             HHHHHHHHTEEE
T ss_pred             HHHHHHHCCcEE
Confidence              7788999876

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.36  E-value=5.2e-07  Score=56.48  Aligned_cols=67  Identities=12%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++.  .++|+++++.|+|||++++.+....+....+.                 ....+|.++|+++
T Consensus        76 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  136 (170)
T 3i9f_A           76 VDFILFANSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGPP-----------------LSIRMDEKDYMGW  136 (170)
T ss_dssp             EEEEEEESCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC-----------------GGGCCCHHHHHHH
T ss_pred             eEEEEEccchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCch-----------------HhhhcCHHHHHHH
Confidence            4999999999999864  68999999999999999999987654432210                 1233789999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++  ||++
T Consensus       137 l~--Gf~~  142 (170)
T 3i9f_A          137 FS--NFVV  142 (170)
T ss_dssp             TT--TEEE
T ss_pred             Hh--CcEE
Confidence            98  9864

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.35  E-value=1.1e-06  Score=57.09  Aligned_cols=80  Identities=10%  Similarity=-0.076  Sum_probs=54.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH--
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK--   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~--   85 (96)
                      .|++++..++|++++++..++|+++++.|+|||.+++........       .+....... +....+....|.+|++  
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~  174 (217)
T 3jwh_A          103 YDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGK-LRHKDHRFEWTRSQFQNW  174 (217)
T ss_dssp             CSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHH
T ss_pred             cCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhccccccc-ccccccccccCHHHHHHH
Confidence            599999999999999999999999999999999666654411000       000000000 1112255667999999  


Q ss_pred             --HHHHhhCcCC
Q 034380           86 --SLAIGLLNSV   95 (96)
Q Consensus        86 --~l~~~AG~~v   95 (96)
                        ++++++|+.|
T Consensus       175 ~~~~~~~~Gf~v  186 (217)
T 3jwh_A          175 ANKITERFAYNV  186 (217)
T ss_dssp             HHHHHHHSSEEE
T ss_pred             HHHHHHHcCceE
Confidence              8888999876

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=7.8e-07  Score=58.77  Aligned_cols=82  Identities=11%  Similarity=0.004  Sum_probs=56.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhh-------hhhhhhhhcCCCCccCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNIS-------RLHITVSNLFPGAKERT   80 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~-------~~dl~ml~~~~~g~~Rt   80 (96)
                      .|++++..++|.+++++..++|+++++.|+|||+++|.|...++...   ......       ...-.+-... ....++
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  200 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDF---FNSLLEKYGQLPYELLLVMEHGI-RPGIFT  200 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHH---HHHHHHHHSSCCHHHHHHHTTTC-CCCCCC
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHH---HHHHHhCCCCCchhhhhccccCC-CCCccC
Confidence            58999999999999999999999999999999999999986543210   000000       0000000111 223479


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+|+.++|  +||.|
T Consensus       201 ~~~~~~~~--aGf~~  213 (245)
T 3ggd_A          201 AEDIELYF--PDFEI  213 (245)
T ss_dssp             HHHHHHHC--TTEEE
T ss_pred             HHHHHHHh--CCCEE
Confidence            99999999  99875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.34  E-value=8.9e-08  Score=61.70  Aligned_cols=88  Identities=6%  Similarity=-0.148  Sum_probs=59.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|+++.++..++++++++.|+|||++++.+...++.............+....-.....+...|.+|+.++
T Consensus        90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  169 (209)
T 2p8j_A           90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKY  169 (209)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHT
T ss_pred             eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHH
Confidence            49999999999999889999999999999999999999987655331100000000010000000002356799999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |+++|+.+
T Consensus       170 ~~~~g~~~  177 (209)
T 2p8j_A          170 FKDMKVLF  177 (209)
T ss_dssp             TTTSEEEE
T ss_pred             HhhcCcee
Confidence            99999753

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.34  E-value=1.6e-07  Score=60.79  Aligned_cols=82  Identities=12%  Similarity=-0.011  Sum_probs=54.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhc-----CCCCccCCHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNL-----FPGAKERTLE   82 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~-----~~~g~~Rt~~   82 (96)
                      .|++++..++| +.+  ..++|+++++.|+|||+++|.+............   ..+........     ......+|.+
T Consensus       117 fD~v~~~~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (227)
T 3e8s_A          117 YDLICANFALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLA  190 (227)
T ss_dssp             EEEEEEESCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHH
T ss_pred             ccEEEECchhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHH
Confidence            59999999999 555  4689999999999999999988755433221100   00000000000     0023467999


Q ss_pred             HHHHHHHhhCcCC
Q 034380           83 EFKSLAIGLLNSV   95 (96)
Q Consensus        83 e~~~l~~~AG~~v   95 (96)
                      +|.+++++|||++
T Consensus       191 ~~~~~l~~aGf~~  203 (227)
T 3e8s_A          191 SWLNALDMAGLRL  203 (227)
T ss_dssp             HHHHHHHHTTEEE
T ss_pred             HHHHHHHHcCCeE
Confidence            9999999999976

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.34  E-value=7.5e-07  Score=58.43  Aligned_cols=37  Identities=14%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             ceEeEecc-cccCC-ChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKW-VLHDW-GDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~-vlh~~-~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|++++.. ++|++ ++++..++|+++++.|+|||++++
T Consensus        97 fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A           97 VDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            49999876 88888 667889999999999999999987

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.32  E-value=2.4e-07  Score=60.11  Aligned_cols=82  Identities=10%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhh-hhhhhhh---hhhhcCCCCccCCHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK-NISRLHI---TVSNLFPGAKERTLEE   83 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~-~~~~~dl---~ml~~~~~g~~Rt~~e   83 (96)
                      .|++++..++|++++.  .++|+++++.|+|||.+++........   ..... ....+..   ..... .+.+.+|.++
T Consensus        94 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  167 (230)
T 3cc8_A           94 FDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLDK-THIRFFTFNE  167 (230)
T ss_dssp             EEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTBT-TCCCCCCHHH
T ss_pred             cCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCCc-ceEEEecHHH
Confidence            3999999999999886  589999999999999999987543211   00000 0000000   00111 1346789999


Q ss_pred             HHHHHHhhCcCC
Q 034380           84 FKSLAIGLLNSV   95 (96)
Q Consensus        84 ~~~l~~~AG~~v   95 (96)
                      |.++++++||++
T Consensus       168 ~~~~l~~~Gf~~  179 (230)
T 3cc8_A          168 MLRMFLKAGYSI  179 (230)
T ss_dssp             HHHHHHHTTEEE
T ss_pred             HHHHHHHcCCeE
Confidence            999999999975

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.32  E-value=2.6e-07  Score=63.06  Aligned_cols=43  Identities=9%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             ceEeEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll-~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++ ..++|.+++++..++|+++++.|+|||+++|.....+
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            398775 4789988988999999999999999999999876544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.30  E-value=9.5e-07  Score=59.20  Aligned_cols=76  Identities=11%  Similarity=-0.129  Sum_probs=56.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|+++   -.++|+++++.|+|||++++.+...........   ....+.     .. ....+|.+++.++
T Consensus       115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~-----~~-~~~~~~~~~~~~~  182 (267)
T 3kkz_A          115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE---INDFWM-----DA-YPEIDTIPNQVAK  182 (267)
T ss_dssp             EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH---HHHHHH-----HH-CTTCEEHHHHHHH
T ss_pred             EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH---HHHHHH-----Hh-CCCCCCHHHHHHH
Confidence            49999999999994   367899999999999999999987654432221   111121     11 3456799999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||++
T Consensus       183 l~~aGf~~  190 (267)
T 3kkz_A          183 IHKAGYLP  190 (267)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCEE
Confidence            99999975

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.30  E-value=6.8e-07  Score=59.30  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..++|++++  ..++|+++++.|+|||+++|...
T Consensus       109 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          109 YNVVLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeC
Confidence            499999999999976  47899999999999999999753

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.26  E-value=4.1e-07  Score=59.65  Aligned_cols=37  Identities=22%  Similarity=0.042  Sum_probs=33.4

Q ss_pred             ceEeEecc-cccCCC-hHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKW-VLHDWG-DDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~-vlh~~~-d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|++++.. ++|+++ +++..++|+++++.|+|||++++
T Consensus       102 fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A          102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            49999998 999994 47789999999999999999987

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.26  E-value=1e-06  Score=58.45  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCC---CCccCCHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP---GAKERTLEEF   84 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~---~g~~Rt~~e~   84 (96)
                      .|++++..++|.++|.  .++|+++++.|+|||++++. . .+.+ ..+.......+..+.-....+   ....++.+++
T Consensus       105 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDW--PKVLAEAIRVLKPGGALLEG-W-DQAE-ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV  179 (263)
T ss_dssp             EEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEE-E-EEEC-CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             eeEEEECCchhhcCCH--HHHHHHHHHHCCCCcEEEEE-e-cCCC-ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHH
Confidence            3999999999999864  68899999999999999988 2 2211 111000001111111111010   2346788999


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      .++++++||.+
T Consensus       180 ~~~l~~~Gf~~  190 (263)
T 2yqz_A          180 EEALRRLGLKP  190 (263)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHcCCCc
Confidence            99999999975

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.25  E-value=3.4e-07  Score=61.94  Aligned_cols=83  Identities=10%  Similarity=0.006  Sum_probs=56.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh-------cCCCCccCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN-------LFPGAKERT   80 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~-------~~~~g~~Rt   80 (96)
                      .|++++..++|++++.  .++|+++++.|+|||+++|.+...+......   .....++...-.       .......+|
T Consensus       137 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (285)
T 4htf_A          137 VDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRD  211 (285)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBC
T ss_pred             ceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCC
Confidence            4999999999999886  6899999999999999999886543210000   000001110000       011346789


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+++.+++++|||+|
T Consensus       212 ~~~l~~~l~~aGf~v  226 (285)
T 4htf_A          212 PTQVYLWLEEAGWQI  226 (285)
T ss_dssp             HHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHCCCce
Confidence            999999999999975

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.20  E-value=1.3e-06  Score=56.64  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=47.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++| +.+  ..++|+++++.|+|||+++|.+....                           ..+.++|.++
T Consensus       116 fD~v~~~~~l~-~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~  165 (215)
T 2zfu_A          116 VDVAVFCLSLM-GTN--IRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRA  165 (215)
T ss_dssp             EEEEEEESCCC-SSC--HHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHH
T ss_pred             EeEEEEehhcc-ccC--HHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHH
Confidence            49999999998 443  57899999999999999999874210                           1188899999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       166 l~~~Gf~~  173 (215)
T 2zfu_A          166 VTKLGFKI  173 (215)
T ss_dssp             HHHTTEEE
T ss_pred             HHHCCCEE
Confidence            99999875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.19  E-value=3.4e-06  Score=53.17  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=50.8

Q ss_pred             ceEeEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMK-WVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~-~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~   86 (96)
                      .|++++. .++|.+++++..++|+++++.|+|||++++....                           ...++.+++.+
T Consensus       108 ~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------~~~~~~~~~~~  160 (195)
T 3cgg_A          108 FDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------GRGWVFGDFLE  160 (195)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------TSSCCHHHHHH
T ss_pred             eeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------CCCcCHHHHHH
Confidence            4999998 8999999999999999999999999999885421                           12267888899


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      +++++|+++
T Consensus       161 ~l~~~Gf~~  169 (195)
T 3cgg_A          161 VAERVGLEL  169 (195)
T ss_dssp             HHHHHTEEE
T ss_pred             HHHHcCCEE
Confidence            999998865

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.19  E-value=2.4e-06  Score=57.62  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhh------hcCCCCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVS------NLFPGAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml------~~~~~g~~Rt~   81 (96)
                      .|+++...++|.++|.  .++|+++++.|+|||++++.....+..  ...   ...+......      .....-..++.
T Consensus       118 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (279)
T 3ccf_A          118 LDAVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KYI---LEALYNALETLGIHNPQALNPWYFPSI  190 (279)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HHH---HHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred             cCEEEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HHH---HHHHHHHHHhcCCccccCcCceeCCCH
Confidence            4999999999999875  588999999999999999876532221  111   0111111000      00002246799


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++|.++++++||++
T Consensus       191 ~~~~~~l~~aGf~~  204 (279)
T 3ccf_A          191 GEYVNILEKQGFDV  204 (279)
T ss_dssp             HHHHHHHHHHTEEE
T ss_pred             HHHHHHHHHcCCEE
Confidence            99999999999975

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.18  E-value=3.6e-06  Score=56.38  Aligned_cols=78  Identities=8%  Similarity=-0.047  Sum_probs=54.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|+++|.  .++|+++++.|+ ||+++|.+...+.....- .   ...+. .+.... +...++.+++. +
T Consensus        95 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~-~~~~~~~~~~~-~  164 (261)
T 3ege_A           95 VDGVISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIW-L---YDYFP-FLWEDA-LRFLPLDEQIN-L  164 (261)
T ss_dssp             BSEEEEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCCG-G---GGTCH-HHHHHH-HTSCCHHHHHH-H
T ss_pred             EeEEEEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHHH-H---HHHHH-HHhhhh-hhhCCCHHHHH-H
Confidence            4999999999999764  788999999999 999999998544322111 0   01111 011111 45567788899 9


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      +++|||.+
T Consensus       165 l~~aGF~~  172 (261)
T 3ege_A          165 LQENTKRR  172 (261)
T ss_dssp             HHHHHCSE
T ss_pred             HHHcCCCc
Confidence            99999964

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.16  E-value=1.8e-06  Score=61.48  Aligned_cols=76  Identities=9%  Similarity=-0.008  Sum_probs=56.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++..+++|+++|  -.++|+++++.|+|||++++.........      . ...++  ... ..+...+|.++|+++
T Consensus       172 fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~-~~~~~--~~~-~~~~~~~s~~~l~~l  239 (416)
T 4e2x_A          172 ANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIV------A-KTSFD--QIF-DEHFFLFSATSVQGM  239 (416)
T ss_dssp             EEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHH------H-HTCGG--GCS-TTCCEECCHHHHHHH
T ss_pred             EEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhh------h-hcchh--hhh-hhhhhcCCHHHHHHH
Confidence            499999999999986  58889999999999999998655432110      0 01111  111 136778999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++||++
T Consensus       240 l~~aGf~~  247 (416)
T 4e2x_A          240 AQRCGFEL  247 (416)
T ss_dssp             HHHTTEEE
T ss_pred             HHHcCCEE
Confidence            99999975

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.15  E-value=2.1e-06  Score=58.27  Aligned_cols=83  Identities=11%  Similarity=0.006  Sum_probs=56.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec-----C---CCCCCch---hhhhhhhhhhhhhhcCCCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM-----P---EFPETDI---ISKNISRLHITVSNLFPGA   76 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~-----~---~~~~~~~---~~~~~~~~dl~ml~~~~~g   76 (96)
                      .|++++..++|+++|.  .++|+++++.|+|||.+++.+...     .   ++...+.   .......+.-. .... +.
T Consensus        90 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~  165 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESD-TQRN-GK  165 (284)
T ss_dssp             EEEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHH-HHHT-CC
T ss_pred             eeEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHH-hhhh-cc
Confidence            4999999999999986  589999999999999999998751     1   1111110   01111111111 1112 45


Q ss_pred             ccCCHHHHHHHHHhhCcC
Q 034380           77 KERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        77 ~~Rt~~e~~~l~~~AG~~   94 (96)
                      ..++..++.+++++|||.
T Consensus       166 ~~~~~~~l~~~l~~aGF~  183 (284)
T 3gu3_A          166 DGNIGMKIPIYLSELGVK  183 (284)
T ss_dssp             CTTGGGTHHHHHHHTTCE
T ss_pred             cccHHHHHHHHHHHcCCC
Confidence            567778999999999985

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.12  E-value=4e-06  Score=55.49  Aligned_cols=83  Identities=12%  Similarity=-0.005  Sum_probs=54.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh--c----CCCCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN--L----FPGAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~--~----~~~g~~Rt~   81 (96)
                      .|++++..++|.++|  ..++|+++++.|+|||++++.......   .+...............  .    ......++.
T Consensus        96 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T 2p35_A           96 ADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQ---EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPP  170 (259)
T ss_dssp             EEEEEEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTT---SHHHHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred             cCEEEEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCC---cHHHHHHHHHhcCcchHHHhccccccccCCCCH
Confidence            399999999999976  468899999999999999998853221   11100000110000000  0    013466899


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++|.++|+++||.|
T Consensus       171 ~~~~~~l~~aGf~v  184 (259)
T 2p35_A          171 SDYFNALSPKSSRV  184 (259)
T ss_dssp             HHHHHHHGGGEEEE
T ss_pred             HHHHHHHHhcCCce
Confidence            99999999999964

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.11  E-value=5.6e-06  Score=54.21  Aligned_cols=86  Identities=12%  Similarity=-0.008  Sum_probs=53.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC--CCCCCchh----h----hhhhhh-----hhhhhhc
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP--EFPETDII----S----KNISRL-----HITVSNL   72 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~--~~~~~~~~----~----~~~~~~-----dl~ml~~   72 (96)
                      .|++++..++|++++  ..++|+++++.|+|||+++|......  ........    .    .....+     ....+..
T Consensus       108 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (243)
T 3bkw_A          108 FDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK  185 (243)
T ss_dssp             EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred             ceEEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence            499999999999986  46899999999999999999874311  00000000    0    000000     0000110


Q ss_pred             CCCCccCCHHHHHHHHHhhCcCC
Q 034380           73 FPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        73 ~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ......||.++|.+++++|||++
T Consensus       186 ~~~~~~~t~~~~~~~l~~aGF~~  208 (243)
T 3bkw_A          186 GVVKHHRTVGTTLNALIRSGFAI  208 (243)
T ss_dssp             SCCEEECCHHHHHHHHHHTTCEE
T ss_pred             ceEEEeccHHHHHHHHHHcCCEe
Confidence            11334479999999999999975

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.11  E-value=2.3e-06  Score=54.44  Aligned_cols=67  Identities=12%  Similarity=-0.036  Sum_probs=51.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|++++++..++|+++++.|+|||+++|++....+....+                ......++.+|++++
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~  161 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRY  161 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHH
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHH
Confidence            4999999999999988899999999999999999999988765432110                012344567777777


Q ss_pred             HHh
Q 034380           88 AIG   90 (96)
Q Consensus        88 ~~~   90 (96)
                      +++
T Consensus       162 ~~~  164 (199)
T 2xvm_A          162 YEG  164 (199)
T ss_dssp             TTT
T ss_pred             hcC
Confidence            764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.08  E-value=1e-05  Score=55.76  Aligned_cols=78  Identities=12%  Similarity=0.008  Sum_probs=55.7

Q ss_pred             EeEecccccCCChHH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380           10 TIFMKWVLHDWGDDL-CLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus        10 ~~ll~~vlh~~~d~~-~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      ++++..+||..+|++ ...+|++++++|+|||.++|.+...+..+  ..   ...+.+..--... ....||.+|+.++|
T Consensus       163 av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~~---~~~~~~~~~~~g~-p~~~rs~~ei~~~f  236 (277)
T 3giw_A          163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--QE---VGRVAREYAARNM-PMRLRTHAEAEEFF  236 (277)
T ss_dssp             EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--HH---HHHHHHHHHHTTC-CCCCCCHHHHHHTT
T ss_pred             hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--HH---HHHHHHHHHhcCC-CCccCCHHHHHHHh
Confidence            577888999999987 58999999999999999999998765321  11   1112222111222 45789999999999


Q ss_pred             HhhCcCC
Q 034380           89 IGLLNSV   95 (96)
Q Consensus        89 ~~AG~~v   95 (96)
                      .  ||.+
T Consensus       237 ~--Glel  241 (277)
T 3giw_A          237 E--GLEL  241 (277)
T ss_dssp             T--TSEE
T ss_pred             C--CCcc
Confidence            4  8864

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.06  E-value=1.3e-06  Score=56.71  Aligned_cols=42  Identities=12%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++..++|.+..++..++|+++++.|+|||++++.+...
T Consensus       104 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          104 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             EEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            499999999888888889999999999999999999998753

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.02  E-value=3.6e-06  Score=56.72  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=37.1

Q ss_pred             ceEeEecccccC--CChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHD--WGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~--~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++..++|.  .+.++..++|+++++.|+|||++++....
T Consensus       134 fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          134 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            499999999998  77888999999999999999999998754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.02  E-value=1.9e-06  Score=58.44  Aligned_cols=74  Identities=12%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             ceEeEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDD--LCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~--~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|+++...++|..+++  +-.++|+++++.|+|||++++.+..... .       +. ..+     .......+|.++|.
T Consensus       175 fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-~-------~~-~~~-----~~~~~~~~~~~~l~  240 (289)
T 2g72_A          175 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-W-------YL-AGE-----ARLTVVPVSEEEVR  240 (289)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-E-------EE-ETT-----EEEECCCCCHHHHH
T ss_pred             CCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-e-------EE-cCC-----eeeeeccCCHHHHH
Confidence            4999999999996644  6789999999999999999998643211 0       00 000     00023457999999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      ++|+++||++
T Consensus       241 ~~l~~aGf~~  250 (289)
T 2g72_A          241 EALVRSGYKV  250 (289)
T ss_dssp             HHHHHTTEEE
T ss_pred             HHHHHcCCeE
Confidence            9999999975

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.99  E-value=3.4e-06  Score=56.74  Aligned_cols=75  Identities=11%  Similarity=-0.006  Sum_probs=53.6

Q ss_pred             cceEeEecccccCC-C-hHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHH
Q 034380            7 KAQTIFMKWVLHDW-G-DDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEF   84 (96)
Q Consensus         7 ~~D~~ll~~vlh~~-~-d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~   84 (96)
                      +.|+++...+||.. + .++-.++|+++++.|+|||++++.+...++.        +  ...-   ... .....|.+++
T Consensus       156 ~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--------~--~~g~---~~~-~~~~~~~~~l  221 (263)
T 2a14_A          156 LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS--------Y--MVGK---REF-SCVALEKGEV  221 (263)
T ss_dssp             CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------E--EETT---EEE-ECCCCCHHHH
T ss_pred             CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------c--eeCC---eEe-eccccCHHHH
Confidence            45999999999974 2 3567889999999999999999987542210        0  0000   001 2234589999


Q ss_pred             HHHHHhhCcCC
Q 034380           85 KSLAIGLLNSV   95 (96)
Q Consensus        85 ~~l~~~AG~~v   95 (96)
                      .++++++||++
T Consensus       222 ~~~l~~aGF~i  232 (263)
T 2a14_A          222 EQAVLDAGFDI  232 (263)
T ss_dssp             HHHHHHTTEEE
T ss_pred             HHHHHHCCCEE
Confidence            99999999975

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.97  E-value=1.2e-05  Score=52.17  Aligned_cols=40  Identities=5%  Similarity=0.133  Sum_probs=35.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++.+.++|.+++++..++++++++.|+|||+++++-.
T Consensus       102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A          102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            4999999999999998888999999999999999555543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.94  E-value=2.9e-05  Score=49.93  Aligned_cols=75  Identities=15%  Similarity=-0.008  Sum_probs=50.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++.  .++|+++++.|+|||+++|.+.....    +............. ....+.+.+|.++++++
T Consensus        96 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~  168 (211)
T 2gs9_A           96 FDVVLLFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----PWAALYRRLGEKGV-LPWAQARFLAREDLKAL  168 (211)
T ss_dssp             EEEEEEESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----HHHHHHHHHHHTTC-TTGGGCCCCCHHHHHHH
T ss_pred             EEEEEEcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----cHHHHHHHHhhccC-ccccccccCCHHHHHHH
Confidence            3999999999999864  68999999999999999998864321    11000000000000 01114677899999999


Q ss_pred             HH
Q 034380           88 AI   89 (96)
Q Consensus        88 ~~   89 (96)
                      ++
T Consensus       169 l~  170 (211)
T 2gs9_A          169 LG  170 (211)
T ss_dssp             HC
T ss_pred             hc
Confidence            98

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.84  E-value=4.7e-06  Score=55.24  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=53.0

Q ss_pred             ceEeEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGDD--LCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~--~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|++++..++|..++.  +..++|+++++.|+|||++++.+.....    .        +...- ... .....+.+++.
T Consensus       158 fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~----~--------~~~~~-~~~-~~~~~~~~~~~  223 (265)
T 2i62_A          158 ADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS----Y--------YMIGE-QKF-SSLPLGWETVR  223 (265)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC----E--------EEETT-EEE-ECCCCCHHHHH
T ss_pred             ccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc----e--------EEcCC-ccc-cccccCHHHHH
Confidence            4999999999944333  6789999999999999999999853221    0        00000 001 23456889999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      ++++++||++
T Consensus       224 ~~l~~aGf~~  233 (265)
T 2i62_A          224 DAVEEAGYTI  233 (265)
T ss_dssp             HHHHHTTCEE
T ss_pred             HHHHHCCCEE
Confidence            9999999975

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.78  E-value=8.3e-05  Score=47.47  Aligned_cols=71  Identities=13%  Similarity=-0.020  Sum_probs=51.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.  +++++.++..++|+++++.|+|||++++.+...+...       +.  .+    ........+|.++++++
T Consensus        95 fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~--~~----~~~~~~~~~~~~~l~~~  159 (202)
T 2kw5_A           95 WEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YN--TG----GPKDLDLLPKLETLQSE  159 (202)
T ss_dssp             CSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GT--SC----CSSSGGGCCCHHHHHHH
T ss_pred             ccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------CC--CC----CCCcceeecCHHHHHHH
Confidence            4999873  4556888899999999999999999999887544321       00  00    00113457899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++  ||+|
T Consensus       160 l~--Gf~v  165 (202)
T 2kw5_A          160 LP--SLNW  165 (202)
T ss_dssp             CS--SSCE
T ss_pred             hc--CceE
Confidence            99  9875

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.52  E-value=5.7e-05  Score=51.78  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|+++++++++.++++.-.+++++++++|+|||.+++
T Consensus       214 fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          214 FDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            4999999999999999999999999999999999987

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.51  E-value=1.6e-05  Score=54.30  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             ceEeEeccccc----CCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHH
Q 034380            8 AQTIFMKWVLH----DWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEE   83 (96)
Q Consensus         8 ~D~~ll~~vlh----~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e   83 (96)
                      .|++++..++|    +|+++...++++++++.|+|||+++|.......-.......  ...+.     .. .......++
T Consensus       178 fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~--~~~~~-----~~-~~~~~~p~~  249 (292)
T 3g07_A          178 YDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLT--ETIYK-----NY-YRIQLKPEQ  249 (292)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSC--HHHHH-----HH-HHCCCCGGG
T ss_pred             cCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhccc--HHHHh-----hh-hcEEEcHHH
Confidence            49999999984    45899999999999999999999988532111000000000  00010     11 223334789


Q ss_pred             HHHHHHh--hCcC
Q 034380           84 FKSLAIG--LLNS   94 (96)
Q Consensus        84 ~~~l~~~--AG~~   94 (96)
                      +.++|.+  +||+
T Consensus       250 ~~~~L~~~~~GF~  262 (292)
T 3g07_A          250 FSSYLTSPDVGFS  262 (292)
T ss_dssp             HHHHHTSTTTCCC
T ss_pred             HHHHHHhcCCCce
Confidence            9999998  9995

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.48  E-value=0.00019  Score=48.32  Aligned_cols=69  Identities=12%  Similarity=-0.124  Sum_probs=50.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++.+.++|.+++++..++++++++.|+|||+++++....+.....                 . .....|.+|+.++
T Consensus       153 FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~-----------------g-~~~~~~~~el~~~  214 (252)
T 2gb4_A          153 FDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA-----------------G-PPFYVPSAELKRL  214 (252)
T ss_dssp             EEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC-----------------C-SSCCCCHHHHHHH
T ss_pred             EEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC-----------------C-CCCCCCHHHHHHH
Confidence            399999999999999888899999999999999998765543321100                 0 0112577888888


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++. +|+|
T Consensus       215 l~~-~f~v  221 (252)
T 2gb4_A          215 FGT-KCSM  221 (252)
T ss_dssp             HTT-TEEE
T ss_pred             hhC-CeEE
Confidence            876 3654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.40  E-value=0.00012  Score=49.34  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      .|++++..++|.+++++..++|+++++.|+|||.++|+.....+
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  228 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD  228 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence            49999999999999999999999999999999998888776554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.26  E-value=0.0002  Score=46.07  Aligned_cols=40  Identities=18%  Similarity=0.142  Sum_probs=35.9

Q ss_pred             ceEeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..++|++++ ++..++|+++++.|+|||.+++...
T Consensus       115 fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          115 FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            499999999999997 5667999999999999999998764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.25  E-value=0.00021  Score=49.28  Aligned_cols=40  Identities=13%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             ceEeEecccccC-CChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHD-WGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~-~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..++|. |++++..++|+++++.|+|||.+++...
T Consensus       130 FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          130 FNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             EEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            399999999986 5655568999999999999999988765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.22  E-value=0.00031  Score=47.48  Aligned_cols=44  Identities=11%  Similarity=0.082  Sum_probs=36.0

Q ss_pred             CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      ++|.+  |++++..++|.++.+   +.++++++.|+|||.++++.+..+
T Consensus        94 ~~~~~sfD~v~~~~~~h~~~~~---~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           94 GLPPASVDVAIAAQAMHWFDLD---RFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCCSSCEEEEEECSCCTTCCHH---HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             cccCCcccEEEEeeehhHhhHH---HHHHHHHHHcCCCCEEEEEECCCC
Confidence            34543  999999999887654   679999999999999999987544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.21  E-value=0.00024  Score=47.79  Aligned_cols=40  Identities=13%  Similarity=0.070  Sum_probs=36.7

Q ss_pred             ceEeEec-ccccCCCh-----HHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMK-WVLHDWGD-----DLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~-~vlh~~~d-----~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++. +++|++++     ++..++|+++++.|+|||++++...
T Consensus       131 fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          131 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             EEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4999998 89999999     8889999999999999999998764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.00038  Score=47.21  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=33.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++..++|.+   +..++|+++++.|+|||.++|.+..
T Consensus       114 fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          114 IDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            4999999999999   3578999999999999999996654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.94  E-value=0.0011  Score=45.10  Aligned_cols=39  Identities=3%  Similarity=0.067  Sum_probs=36.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++...++|+|++++..+.++++++.| |||++++.-.
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            49999999999999999999999999999 9999998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.80  E-value=0.0059  Score=48.10  Aligned_cols=40  Identities=10%  Similarity=0.002  Sum_probs=35.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++..++|++++++..++++++++.|+|| .++|....
T Consensus       797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            49999999999999999999999999999999 66666543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.71  E-value=0.00079  Score=42.86  Aligned_cols=42  Identities=17%  Similarity=0.123  Sum_probs=35.5

Q ss_pred             ceEeEecccccCCC-------------hHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWG-------------DDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~-------------d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|+++...++|...             .++..++|+++.+.|+|||++++.+...
T Consensus       108 fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          108 FDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             EEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            49999988887665             5567899999999999999999998643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.70  E-value=0.0041  Score=39.65  Aligned_cols=38  Identities=16%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            6 PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         6 P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      +..|++++...++     +..++++++.+.|+|||++++....
T Consensus       107 ~~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          107 PDPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CCCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            3469998887776     4568999999999999999997654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.55  E-value=0.0022  Score=42.05  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=32.6

Q ss_pred             ceEeEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMK-WVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~-~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++. ..+|.+++++..++|+++++.|+|||.+++-
T Consensus       106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            4999875 5677888888999999999999999998764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.54  E-value=0.00061  Score=43.57  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=29.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|+++....+|+     ..++++++++.|+|||++++.+...
T Consensus       126 fD~i~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          126 FDLIVANILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             EEEEEEESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             ceEEEECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCc
Confidence            499888766654     4788999999999999999976543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.50  E-value=0.003  Score=43.67  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc-------cCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK-------ERT   80 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~-------~Rt   80 (96)
                      .|++++...+|++     .++|+.+++.|+|||+++++-  .|.-....      ...+      . +|.       .++
T Consensus       152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~------~~~~------~-~G~vrd~~~~~~~  211 (291)
T 3hp7_A          152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGR------EQIG------K-NGIVRESSIHEKV  211 (291)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCG------GGCC--------CCCCCCHHHHHHH
T ss_pred             CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccCh------hhcC------C-CCccCCHHHHHHH
Confidence            4888887777765     678999999999999999962  12111000      0011      1 233       347


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+++.++++++||.+
T Consensus       212 ~~~v~~~~~~~Gf~v  226 (291)
T 3hp7_A          212 LETVTAFAVDYGFSV  226 (291)
T ss_dssp             HHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCEE
Confidence            788999999999976

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.48  E-value=0.0023  Score=46.60  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP   53 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~   53 (96)
                      .+|++++..+++ +  ++..+.|+++.+.|+|||+|++.|.+.+++.
T Consensus       252 ~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          252 NTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             TCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             CccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            469999877764 2  3456667889999999999999999988765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.42  E-value=0.0012  Score=43.81  Aligned_cols=40  Identities=10%  Similarity=0.046  Sum_probs=33.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++..+++++.++ ..++|+++++.|+|||++++....
T Consensus       115 fD~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          115 FEAVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             EEEEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3999998876666443 788999999999999999998754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.36  E-value=0.0054  Score=40.04  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=26.2

Q ss_pred             ceEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|+++     |+.++. +...+++++.+.|+|||+++|.
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            38776     666554 4466799999999999999997

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.28  E-value=0.0095  Score=37.21  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             CCCCc--ceEeEecccccCCChH-------HHHHHHHHHHHhCCCCCEEEEEee
Q 034380            3 VEVPK--AQTIFMKWVLHDWGDD-------LCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         3 ~~~P~--~D~~ll~~vlh~~~d~-------~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      ++++.  .|+++..-.+|..++.       +..++++++.+.+ |||++++.+.
T Consensus        72 ~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           72 CSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             TTBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             hhcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            44443  4999998888865554       5677889999888 9999999874

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.27  E-value=0.0063  Score=37.79  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++...+| ++.+...++++++.+.|+|||++++.....
T Consensus       120 ~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          120 YNKIITNPPIR-AGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             EEEEEECCCST-TCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ceEEEECCCcc-cchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            49999887776 456778899999999999999999988753

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.16  E-value=0.003  Score=43.97  Aligned_cols=41  Identities=17%  Similarity=0.223  Sum_probs=36.1

Q ss_pred             ceEeEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHD---WGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~---~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++...+|.   ++.+...++++++++.|+|||+++|+...
T Consensus       262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            499999999987   46677899999999999999999998763

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.15  E-value=0.028  Score=39.33  Aligned_cols=83  Identities=11%  Similarity=0.054  Sum_probs=56.6

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh-h-hcCC-CCccCCHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV-S-NLFP-GAKERTLEEFK   85 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m-l-~~~~-~g~~Rt~~e~~   85 (96)
                      .+++.-.+++.++.+++.++++.+.+.. |+|.+++.|.+.+..+..+....+  ...+.- . .... -....|.++..
T Consensus       196 tl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m--~~~l~~~rg~~l~~~~~y~s~~~~~  272 (334)
T 1rjd_A          196 TIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIM--QSNLKESRNLEMPTLMTYNSKEKYA  272 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHH--HHHHHHHHCCCCTTTTTTCSHHHHH
T ss_pred             EEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHH--HHHhhcccCCcccccccCCCHHHHH
Confidence            7788888999999999999999999877 788888999987733322211001  011111 0 0111 12457899999


Q ss_pred             HHHHhhCcC
Q 034380           86 SLAIGLLNS   94 (96)
Q Consensus        86 ~l~~~AG~~   94 (96)
                      +.|.++||.
T Consensus       273 ~rl~~~Gf~  281 (334)
T 1rjd_A          273 SRWSAAPNV  281 (334)
T ss_dssp             GGGTTSSEE
T ss_pred             HHHHHCCCC
Confidence            999999984

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.14  E-value=0.0034  Score=42.75  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.2

Q ss_pred             ceEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++...++|..  +.++..++|+++++.|+|||.+++...
T Consensus       115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4999999999987  446778999999999999999998765

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.08  E-value=0.018  Score=38.60  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEE
Q 034380           23 DLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus        23 ~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      +...++++++.+.|+|||.+++.
T Consensus       215 ~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          215 ADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEE
Confidence            45688999999999999998885

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.04  E-value=0.0007  Score=44.78  Aligned_cols=32  Identities=9%  Similarity=-0.047  Sum_probs=24.7

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380           14 KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus        14 ~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      ...++++.+  -.++++++++.|+|||+++.++.
T Consensus       140 ~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~  171 (236)
T 3orh_A          140 SEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             BGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ccchhhhcc--hhhhhhhhhheeCCCCEEEEEec
Confidence            455555555  57889999999999999987653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.01  E-value=0.0072  Score=37.28  Aligned_cols=37  Identities=16%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++...+|+      .++++++.+.|+|||++++.+...+
T Consensus        95 ~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~  131 (178)
T 3hm2_A           95 PDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTVE  131 (178)
T ss_dssp             CSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred             CCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence            599999998887      6789999999999999998876443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.99  E-value=0.0023  Score=42.12  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=26.6

Q ss_pred             eEeEecccccCCChHH------HHHHHHHHHHhCCCCCEEEEEeee
Q 034380            9 QTIFMKWVLHDWGDDL------CLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~------~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      |++..-.+...|+...      -..+|+++++.|+|||++++...+
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~  141 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTY  141 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEec
Confidence            5554444544455421      135799999999999999995443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.99  E-value=0.0034  Score=40.65  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=28.8

Q ss_pred             CCCCc--ceEeEecccccCCChH-----------------HHHHHHHHHHHhCCCCCEEEEE
Q 034380            3 VEVPK--AQTIFMKWVLHDWGDD-----------------LCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         3 ~~~P~--~D~~ll~~vlh~~~d~-----------------~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      +++|.  .|++++.-..|..++.                 ...++++.+.+.|+|||+++++
T Consensus       117 ~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          117 KGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             TTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            34543  4988876555444332                 2378999999999999999986

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.93  E-value=0.0044  Score=40.50  Aligned_cols=45  Identities=13%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             CCCc--ceEeEe-ccc--ccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            4 EVPK--AQTIFM-KWV--LHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         4 ~~P~--~D~~ll-~~v--lh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      ++|.  .|++++ ...  .+++..++-..+++++++.|+|||++++++..
T Consensus       123 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          123 TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            4554  399987 553  56666666778899999999999999988754

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=95.45  E-value=0.0054  Score=40.67  Aligned_cols=58  Identities=21%  Similarity=0.138  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhh----hhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380           26 LKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHIT----VSNLFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~----ml~~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      .++|+.+++.|+|||++++.-   .     |.   +.......    .... .....++.+++.++++++||+|
T Consensus       117 ~~~l~~i~rvLkpgG~lv~~~---~-----p~---~e~~~~~~~~~G~~~d-~~~~~~~~~~l~~~l~~aGf~v  178 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAALI---K-----PQ---FEAGREQVGKNGIIRD-PKVHQMTIEKVLKTATQLGFSV  178 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEE---C-----HH---HHSCHHHHC-CCCCCC-HHHHHHHHHHHHHHHHHHTEEE
T ss_pred             HHHHHHHHHhccCCCEEEEEE---C-----cc---cccCHHHhCcCCeecC-cchhHHHHHHHHHHHHHCCCEE
Confidence            678999999999999999852   1     10   11111100    0000 0122347889999999999976

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.21  E-value=0.14  Score=36.44  Aligned_cols=89  Identities=12%  Similarity=0.017  Sum_probs=55.1

Q ss_pred             CCCcc--eEeEecccccCCChH------------------------------------HHHHHHHHHHHhCCCCCEEEEE
Q 034380            4 EVPKA--QTIFMKWVLHDWGDD------------------------------------LCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         4 ~~P~~--D~~ll~~vlh~~~d~------------------------------------~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .+|..  |+++-+..||-.++.                                    +-..+|+..++.|+|||++++.
T Consensus       145 lfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~  224 (374)
T 3b5i_A          145 LFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV  224 (374)
T ss_dssp             CSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            35764  999999999977621                                    3456799999999999999887


Q ss_pred             eeecCCCCCCchhhhhhhhh-hh-----hhhhcCCCC--------------ccCCHHHHHHHHH-hhCcCC
Q 034380           46 ESIMPEFPETDIISKNISRL-HI-----TVSNLFPGA--------------KERTLEEFKSLAI-GLLNSV   95 (96)
Q Consensus        46 e~~~~~~~~~~~~~~~~~~~-dl-----~ml~~~~~g--------------~~Rt~~e~~~l~~-~AG~~v   95 (96)
                      =.-.++...... ......+ ++     .-|+  ..|              -.||.+|++++++ ++||.|
T Consensus       225 ~~gr~~~~~~~~-~~~~~~~~~~l~~al~~l~--~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          225 CLGRTSVDPTDQ-GGAGLLFGTHFQDAWDDLV--REGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             EEECCCSSTTCC-HHHHHHHSSHHHHHHHHTT--SSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             EecCCCCccccc-cchhhHHHHHHHHHHHHHH--HhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            665443211000 0011112 21     0011  122              2489999999998 588865

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.08  E-value=0.026  Score=40.96  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=34.5

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      ..|++++.+.++  . ++..+.|+++.+.|+|||++++.|.+.+..
T Consensus       323 ~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          323 QCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             GCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             CCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            359999877773  2 345677899999999999999999887765

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=95.05  E-value=0.044  Score=35.99  Aligned_cols=41  Identities=15%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             ceEeEecccccCCC-------hHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWG-------DDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~-------d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++....+...       .+...++++++.+.|+|||++++++..
T Consensus       169 fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          169 PDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             CSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             ceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            49998876544433       377889999999999999999986543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=94.96  E-value=0.036  Score=36.82  Aligned_cols=36  Identities=11%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|+++.....     +....+++++++.|+|||++++.+..
T Consensus       185 fD~Vv~n~~~-----~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          185 FDLLVANLYA-----ELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEEEECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCcH-----HHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            4888764332     34678999999999999999997654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=94.74  E-value=0.036  Score=33.55  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             ceEeEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDL---------CLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~---------~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|+++....+|..++..         ..++++++.+.|+|||++++.....+
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            49999988888665541         26889999999999999998776433

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=94.62  E-value=0.098  Score=36.71  Aligned_cols=83  Identities=14%  Similarity=0.074  Sum_probs=52.7

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      =+++.-.++..++.+++.++|+.+.+..+ +|.++++|.+.++++............+..|..   =-...|.++..++|
T Consensus       193 tl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~~~g~pl~s---l~~y~t~~~~~~r~  268 (334)
T 3iei_A          193 TLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLRRRQCDLAG---VETCKSLESQKERL  268 (334)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHHTTTCCCTT---GGGGGCHHHHHHHH
T ss_pred             EEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHHHhCCCCcc---cccCCCHHHHHHHH
Confidence            46667779999999999999999998765 567778899855431100000000001111110   11346789999999


Q ss_pred             HhhCcCC
Q 034380           89 IGLLNSV   95 (96)
Q Consensus        89 ~~AG~~v   95 (96)
                      .++||..
T Consensus       269 ~~~Gw~~  275 (334)
T 3iei_A          269 LSNGWET  275 (334)
T ss_dssp             HTTTCSE
T ss_pred             HHcCCCc
Confidence            9999974

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=94.47  E-value=0.0027  Score=41.31  Aligned_cols=28  Identities=4%  Similarity=-0.050  Sum_probs=22.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKII   43 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~   43 (96)
                      .|+++..        .+..++|+++++.|+|||+++
T Consensus       112 fD~v~~~--------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          112 FGLIVSR--------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEEE--------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEEeC--------CCHHHHHHHHHHHcCCCcEEE
Confidence            3988876        124577999999999999998

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=94.45  E-value=0.023  Score=35.08  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      ..|++++...+|++     .++++++.+.|+|||++++...
T Consensus       100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEec
Confidence            35999988777643     7889999999999999998765

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.42  E-value=0.0007  Score=44.80  Aligned_cols=78  Identities=9%  Similarity=-0.097  Sum_probs=43.4

Q ss_pred             ceEeEecccccCCCh-------------HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCC
Q 034380            8 AQTIFMKWVLHDWGD-------------DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP   74 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-------------~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~   74 (96)
                      .|+++..-..|..++             +....+++.+++.|+|||++.+++.+....        .........+... 
T Consensus       141 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~--------~~~l~~~g~~~~~-  211 (254)
T 2h00_A          141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS--------LQLKKRLRWYSCM-  211 (254)
T ss_dssp             BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH--------HHHGGGBSCEEEE-
T ss_pred             ccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH--------HhcccceEEEEEC-
Confidence            498887644444331             112356788889999999998887654421        0111111122222 


Q ss_pred             CCccCCHHHHHHHHHhhCcC
Q 034380           75 GAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        75 ~g~~Rt~~e~~~l~~~AG~~   94 (96)
                      .|...+.+++.++++++||+
T Consensus       212 ~~~~~~~~~~~~~l~~~Gf~  231 (254)
T 2h00_A          212 LGKKCSLAPLKEELRIQGVP  231 (254)
T ss_dssp             ESSTTSHHHHHHHHHHTTCS
T ss_pred             CCChhHHHHHHHHHHHcCCC
Confidence            46667778999999999986

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.39  E-value=0.029  Score=39.69  Aligned_cols=44  Identities=14%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             CCCCc--ceEeEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            3 VEVPK--AQTIFMKWVLHD---WGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         3 ~~~P~--~D~~ll~~vlh~---~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      +++|.  .|++++.-.+|.   .++....++++.+.+.|+|||+++|+-
T Consensus       286 ~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          286 SGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             TTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            45553  499998877774   556667789999999999999999965

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=94.34  E-value=0.012  Score=41.02  Aligned_cols=41  Identities=12%  Similarity=0.086  Sum_probs=35.1

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      +|. .|+++...+++++..+...+.+.++++.|+|||++++.
T Consensus       113 ~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            344 49999999999998888888999999999999999854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=94.29  E-value=0.021  Score=36.61  Aligned_cols=59  Identities=7%  Similarity=-0.101  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHHHhhCcCC
Q 034380           26 LKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      .++|+++++.|+|||++++.-....-....+      ...+     .......+..+++..+++++||+|
T Consensus       120 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~l~~~l~~aGf~i  178 (218)
T 3mq2_A          120 PEMLRGMAAVCRPGASFLVALNLHAWRPSVP------EVGE-----HPEPTPDSADEWLAPRYAEAGWKL  178 (218)
T ss_dssp             SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------GGTT-----CCCCCHHHHHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEecccccccccc------cccc-----CCccchHHHHHHHHHHHHHcCCCc
Confidence            6889999999999999998432211110000      0001     011122334556888999999875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=94.07  E-value=0.013  Score=42.89  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=35.2

Q ss_pred             CCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            4 EVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         4 ~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      ++|. .|+++...+++.+.+++..+.+.++++.|+|||++++
T Consensus       220 ~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          220 SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             ccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            3454 4999998888999988889999999999999999984

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=94.07  E-value=0.024  Score=35.70  Aligned_cols=23  Identities=9%  Similarity=-0.145  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeee
Q 034380           26 LKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .++++++++.|+|||++++++.-
T Consensus       144 ~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          144 RRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HHHHTCCGGGBCSSSEEEEEECT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEC
Confidence            78999999999999997777653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=93.84  E-value=0.062  Score=34.75  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=26.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++. +.+   .++...+++++++.|+|||++++.-
T Consensus       127 fD~V~~~-~~~---~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          127 VDLIYQD-IAQ---KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEEEC-CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEe-ccC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            4988765 332   2445567999999999999999983

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.82  E-value=0.23  Score=35.56  Aligned_cols=68  Identities=10%  Similarity=0.051  Sum_probs=38.4

Q ss_pred             HHHHHHHhCCCCCEEEEEeeecCCCC-CCchh-hhhhhhhhhhhhhcC---------CCCccCCHHHHHHHHHhhC-cCC
Q 034380           28 ILKNCYDALPEPGKIIVVESIMPEFP-ETDII-SKNISRLHITVSNLF---------PGAKERTLEEFKSLAIGLL-NSV   95 (96)
Q Consensus        28 lL~~~~~al~~gg~l~I~e~~~~~~~-~~~~~-~~~~~~~dl~ml~~~---------~~g~~Rt~~e~~~l~~~AG-~~v   95 (96)
                      +|+..++.|+|||++++.=.-.++.. .+... .....+.++.--...         .---.+|.+|++++++++| |.|
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i  286 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEI  286 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceE
Confidence            48888999999999988766444321 11100 011122222111000         0123589999999999986 554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.76  E-value=1.1  Score=31.71  Aligned_cols=71  Identities=7%  Similarity=-0.043  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-----chhhh-hhhhhhhhhhhcC---------CCCccCCHHHHHHHHH
Q 034380           25 CLKILKNCYDALPEPGKIIVVESIMPEFPET-----DIISK-NISRLHITVSNLF---------PGAKERTLEEFKSLAI   89 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-----~~~~~-~~~~~dl~ml~~~---------~~g~~Rt~~e~~~l~~   89 (96)
                      -..+|+..++.|+|||++++.=.-.++....     ...+. ..++.|+.--...         .---.+|.+|++++++
T Consensus       188 ~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie  267 (359)
T 1m6e_X          188 HALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEIL  267 (359)
T ss_dssp             HHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHH
Confidence            3467999999999999998776554433110     00000 1122222111100         0124789999999999


Q ss_pred             hhCc-CC
Q 034380           90 GLLN-SV   95 (96)
Q Consensus        90 ~AG~-~v   95 (96)
                      ++|. .|
T Consensus       268 ~~G~F~i  274 (359)
T 1m6e_X          268 KEGSFLI  274 (359)
T ss_dssp             HTTTBCC
T ss_pred             HcCCceE
Confidence            9974 54

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=93.56  E-value=0.064  Score=37.65  Aligned_cols=39  Identities=8%  Similarity=-0.198  Sum_probs=31.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++...+|.+.   ..++|+++.++|+|||++++++...
T Consensus       242 fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          242 FDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             BSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             ccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEec
Confidence            49999977666542   4899999999999999888887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=93.44  E-value=0.065  Score=33.25  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=28.2

Q ss_pred             ceEeEec-ccccC------CChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMK-WVLHD------WGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~-~vlh~------~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++. ..++.      ...++..++|+++.+.|+|||+++|......
T Consensus        90 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  139 (185)
T 3mti_A           90 IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH  139 (185)
T ss_dssp             EEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred             cCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence            4888765 23322      0235667889999999999999999876433

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=93.25  E-value=0.12  Score=34.72  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=30.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCC---C--CCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALP---E--PGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~---~--gg~l~I~   45 (96)
                      .|++++..++|+.++  ...+++.+.+.|+   |  ||+++|+
T Consensus       164 fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          164 FQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             BSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             CCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            499999999998655  5788999999999   9  9998774

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=92.96  E-value=0.14  Score=33.71  Aligned_cols=38  Identities=13%  Similarity=-0.036  Sum_probs=29.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++.     .+......+++++.+.|+|||.+++.+....
T Consensus       137 fD~V~~d-----~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          137 FDLIFID-----ADKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             CSEEEEC-----SCGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             eEEEEEC-----CchHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            4888763     3455567899999999999998888765543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.82  E-value=0.9  Score=34.36  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhh-cC-CCCccCCHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSN-LF-PGAKERTLEEFKS   86 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~-~~-~~g~~Rt~~e~~~   86 (96)
                      -+++.--+|..++.+++.++|+.+.+ + |+|.++++|.+.+.....+....+  ...+.... .. .--...|.++..+
T Consensus       219 tl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~f~~~m--~~~~~~~g~~l~~~~~~~~~~~~~~  294 (695)
T 2zwa_A          219 KVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEPFSKQM--LAHFKRNDSPLQSVLKYNTIESQVQ  294 (695)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSHHHHHH--HHHHHHTTCCCCGGGTCCSHHHHHH
T ss_pred             EEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCChHHHHH--HHHHHHcCCCCCccccCCCHHHHHH
Confidence            45666779999999999999999984 5 688999999987754433311100  01111100 00 0123558999999


Q ss_pred             HHHhhCcC
Q 034380           87 LAIGLLNS   94 (96)
Q Consensus        87 l~~~AG~~   94 (96)
                      .|.++||+
T Consensus       295 ~~~~~Gw~  302 (695)
T 2zwa_A          295 RFNKLGFA  302 (695)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHCCCC
Confidence            99999996

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=92.61  E-value=0.089  Score=37.32  Aligned_cols=39  Identities=15%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             ceEeEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHD---WGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~---~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++.-.+|.   ...+...++++++++.|+|||+++|+-
T Consensus       299 fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          299 FDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             EEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            499999888887   456778899999999999999999974

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.60  E-value=0.17  Score=32.41  Aligned_cols=36  Identities=11%  Similarity=0.162  Sum_probs=27.0

Q ss_pred             CcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            6 PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         6 P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      +..|++++...+    +  .. +++.+.+.|+|||++++....
T Consensus       121 ~~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          121 PLPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             CCCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecC
Confidence            346988876533    2  23 899999999999999887653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=92.59  E-value=0.065  Score=34.50  Aligned_cols=40  Identities=15%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++....|.+.+  ..++++.+ +.|+|||.+++.+...+
T Consensus       135 fD~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~~~  174 (221)
T 3u81_A          135 LDMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVIVP  174 (221)
T ss_dssp             CSEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred             eEEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCCCc
Confidence            599998887777654  35778888 99999999988776654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=92.37  E-value=0.089  Score=35.10  Aligned_cols=36  Identities=11%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++- +.|.   ++...+++++++.|+|||+++|...
T Consensus       148 vDvVf~d-~~~~---~~~~~~l~~~~r~LKpGG~lvI~ik  183 (233)
T 4df3_A          148 VDGLYAD-VAQP---EQAAIVVRNARFFLRDGGYMLMAIK  183 (233)
T ss_dssp             EEEEEEC-CCCT---THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEEe-ccCC---hhHHHHHHHHHHhccCCCEEEEEEe
Confidence            3776642 2222   2356789999999999999998753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=92.35  E-value=0.18  Score=31.56  Aligned_cols=43  Identities=14%  Similarity=0.113  Sum_probs=31.5

Q ss_pred             ceEeEecccc-------cCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVL-------HDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vl-------h~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++...+       +....++..++++++.+.|+|||++++......
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  143 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG  143 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence            4888876544       112234567799999999999999999886543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=92.29  E-value=0.48  Score=29.44  Aligned_cols=42  Identities=10%  Similarity=-0.122  Sum_probs=32.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHH--hCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYD--ALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~--al~~gg~l~I~e~~~~   50 (96)
                      .|++++.-..|. ..++..++++.+.+  .|+|||.++|......
T Consensus       114 fD~i~~~~p~~~-~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          114 VDLVLADPPYNV-DSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CSEEEECCCTTS-CHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ccEEEECCCCCc-chhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            499888766554 35678899999999  9999999998665433

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=92.05  E-value=0.12  Score=33.11  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=25.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++...    ..+....+++++++.|+|||++++.
T Consensus       144 ~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            488885322    3334456699999999999999998

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=91.76  E-value=0.09  Score=35.94  Aligned_cols=39  Identities=8%  Similarity=-0.083  Sum_probs=25.9

Q ss_pred             ceEeEecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLC--LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~--~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++-...+.+++...  .++++++++.|+|||.+++..
T Consensus       170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             EEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            499998666666554433  588999999999999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=91.61  E-value=0.18  Score=32.24  Aligned_cols=38  Identities=11%  Similarity=-0.048  Sum_probs=28.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++.     .+......+++++.+.|+|||.+++.+...+
T Consensus       134 fD~v~~d-----~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          134 FDFIFID-----ADKQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             CSEEEEC-----SCGGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             cCEEEEc-----CCcHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            4877654     3344567899999999999998877665544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=91.52  E-value=0.091  Score=33.25  Aligned_cols=33  Identities=12%  Similarity=0.079  Sum_probs=27.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++...+|++++        .+.+.|+|||++++.-..
T Consensus       144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence            499999999999987        467889999999987543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=91.47  E-value=0.097  Score=33.24  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=27.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..++|++++        ++.+.|+|||++++.-.
T Consensus       147 fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred             eeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence            499999999999884        67789999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=91.40  E-value=0.15  Score=33.10  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=29.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++..     ..+...++++++.+.|+|||++++.+...+
T Consensus       148 fD~I~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  185 (239)
T 2hnk_A          148 IDLFFLDA-----DKENYPNYYPLILKLLKPGGLLIADNVLWD  185 (239)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             cCEEEEeC-----CHHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence            48887653     345566889999999999999998765443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=91.12  E-value=0.12  Score=33.20  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=27.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..++|++++        .+.+.|+|||++++...
T Consensus       135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence            499999999999885        46779999999999864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=91.10  E-value=0.1  Score=34.81  Aligned_cols=34  Identities=6%  Similarity=-0.020  Sum_probs=27.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     ++++.  .++|+++.+.|+|||++++....
T Consensus       180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence            488887     45544  57899999999999999998753

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=91.01  E-value=0.082  Score=34.54  Aligned_cols=38  Identities=11%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      ++|.  .|++++     ++++.  .++++++.+.|+|||++++....
T Consensus       157 ~~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          157 GIEEENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             CCCCCSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred             ccCCCCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECC
Confidence            3454  487775     55554  57899999999999999998643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.96  E-value=0.22  Score=34.44  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=28.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++....     ++-.++++++++.|+|||++++.+.
T Consensus       189 FDvV~~~a~~-----~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          189 FDVLMVAALA-----EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CSEEEECTTC-----SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             cCEEEECCCc-----cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            4999875542     3346899999999999999999873

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=90.93  E-value=0.09  Score=34.24  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=27.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     ++++.  .++|+++.+.|+|||++++....
T Consensus       167 ~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          167 YDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             EEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESC
T ss_pred             cCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence            488886     45543  47899999999999999998853

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=90.47  E-value=0.46  Score=32.79  Aligned_cols=83  Identities=10%  Similarity=-0.115  Sum_probs=51.3

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcC--------CCCccC-
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLF--------PGAKER-   79 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~--------~~g~~R-   79 (96)
                      =++++-.++|.+++++..++++.+.+.+.||+.| ++|.+.++.....  .....+.. ..+...        ..-..| 
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l-~~d~~~~~~~~~~--~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~  256 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRI-AVETSPLHGDEWR--EQMQLRFR-RVSDALGFEQAVDVQELIYHD  256 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEE-EEECCCTTCSHHH--HHHHHHHH-HHHC-----------CCTTCC
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEE-EEEecCCCCcchh--HHHHHHHH-HHHHHcCCcCCCCccccccCC
Confidence            4677788999999999999999999988887765 5566655431010  00111110 001000        022233 


Q ss_pred             C-HHHHHHHHHhhCcCC
Q 034380           80 T-LEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t-~~e~~~l~~~AG~~v   95 (96)
                      | .++..++|.+.||++
T Consensus       257 ~~~~~~~~~f~~~G~~~  273 (310)
T 2uyo_A          257 ENRAVVADWLNRHGWRA  273 (310)
T ss_dssp             TTCCCHHHHHTTTTEEE
T ss_pred             CChHHHHHHHHHCcCcc
Confidence            6 789999999999864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=90.27  E-value=0.17  Score=32.68  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=25.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|++++...    ..+....+++++.+.|+|||+++|
T Consensus       148 ~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i  180 (233)
T 2ipx_A          148 VDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVI  180 (233)
T ss_dssp             EEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEE
Confidence            498887322    445567789999999999999999

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=90.16  E-value=0.15  Score=31.68  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             ceEeEecccccC---C-ChHH-----HHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHD---W-GDDL-----CLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~---~-~d~~-----~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++....+|.   | .|..     +.++++.+.+.|+|||++++...
T Consensus        98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            499887543332   2 2221     25889999999999999998765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=89.92  E-value=0.11  Score=33.57  Aligned_cols=36  Identities=8%  Similarity=0.087  Sum_probs=28.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++....+     +..++++++.+.|+|||++++.+..
T Consensus       127 fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          127 FDVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EEEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             ccEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            49888866654     4578899999999999999887543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=89.89  E-value=0.14  Score=37.13  Aligned_cols=38  Identities=5%  Similarity=-0.071  Sum_probs=30.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|+++. ...|.|.  +..+.|+++++.|+|||.++|.|..
T Consensus       289 FDlVis-dgsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          289 FDIVID-DGSHINA--HVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EEEEEE-CSCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccEEEE-CCcccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence            499876 4567664  4578899999999999999998865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=89.56  E-value=0.14  Score=32.78  Aligned_cols=38  Identities=16%  Similarity=0.097  Sum_probs=29.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++.     .+.+....+++++.+.|+|||.+++.+...+
T Consensus       141 fD~v~~~-----~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          141 YDLIYID-----ADKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEEEEC-----SCGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             ccEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            4887743     3455567899999999999999998876654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=89.33  E-value=0.19  Score=32.18  Aligned_cols=37  Identities=16%  Similarity=0.324  Sum_probs=28.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++     |.+.....++++++.+.|+|||.+++.+...
T Consensus       146 ~D~v~~-----d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          146 FDVAVV-----DADKENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             EEEEEE-----CSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             ccEEEE-----CCCHHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            488776     3334556788999999999999999877653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=89.19  E-value=0.2  Score=32.47  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++...+|.+++        ++.+.|+|||++++.-.
T Consensus       159 fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          159 YDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence            499999999999885        56778999999988654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=88.82  E-value=0.22  Score=33.09  Aligned_cols=27  Identities=7%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380           20 WGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        20 ~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      ........+++.+.+.|+|||+++++-
T Consensus       144 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          144 MTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             ---CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            334446789999999999999998753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=88.36  E-value=0.61  Score=31.96  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=25.5

Q ss_pred             ceEeEeccccc--CC-ChHH-HHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLH--DW-GDDL-CLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh--~~-~d~~-~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|+++....++  +| .|.. ..++|+.+.+.|+|||.+++
T Consensus       149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            59988865543  22 2222 23688999999999997776

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=88.23  E-value=0.36  Score=33.06  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeeecC
Q 034380           26 LKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .++|+++.+.|+|||++++....+.
T Consensus       226 ~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          226 MRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            5899999999999999988765443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.92  E-value=0.5  Score=29.43  Aligned_cols=39  Identities=23%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             ceEeEecccccCCC----hHH-----HHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWG----DDL-----CLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~----d~~-----~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|+++....+|.-+    |..     ..++|+.+.+.|+|||++++..
T Consensus       107 fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          107 IDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            49998876665431    211     2358999999999999998744

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=87.68  E-value=0.52  Score=30.83  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=27.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHH-hCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYD-ALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~-al~~gg~l~I~e~   47 (96)
                      .|++++... |.    +..++|+.+.+ .|+|||++++.+.
T Consensus       153 fD~I~~d~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          153 HPLIFIDNA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SSEEEEESS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCEEEECCc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            488887554 53    35678999996 9999999999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=87.24  E-value=0.49  Score=31.71  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=27.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++.     .+ ....++++.+.+.|+|||.+++.+...
T Consensus       193 fD~Vi~~-----~p-~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          193 ADRILMG-----YV-VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEEEEC-----CC-SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ccEEEEC-----Cc-hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            4877763     33 223678999999999999999988754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=87.10  E-value=0.26  Score=34.66  Aligned_cols=41  Identities=10%  Similarity=0.073  Sum_probs=31.2

Q ss_pred             ceEeEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDD-LCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~-~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|+++...+.|....+ ....+++.+.+.|+|||.+++.+..
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            4999987666665433 3566899999999999999877654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=87.01  E-value=0.34  Score=33.00  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++....+|+.+        +++.+.|+|||+++|...
T Consensus       145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred             eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence            49999999999888        456779999999999754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=86.76  E-value=0.28  Score=34.05  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=27.0

Q ss_pred             ceEeEecccccCC-ChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLHDW-GDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh~~-~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|+++...+.+.+ ..+....+++.+.+.|+|||.++.
T Consensus       134 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          134 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            4999987654443 223356789999999999999873

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=86.74  E-value=0.44  Score=32.82  Aligned_cols=39  Identities=10%  Similarity=0.055  Sum_probs=34.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      +|++++--++|...+++-...+ ++.++|+|+|.+|-.+.
T Consensus       199 ~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             CSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             cchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            5999999999999998877788 89999999988887776

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=86.70  E-value=0.27  Score=32.34  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=28.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++..     +......+++++.+.|+|||.+++.+....
T Consensus       137 fD~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          137 FDFIFIDA-----DKTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             EEEEEEES-----CGGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             EeEEEEcC-----ChHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            48887643     244567789999999999999988776544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=86.61  E-value=0.16  Score=32.29  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=27.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++.     .+......+++++.+.|+|||.+++.+...
T Consensus       127 fD~v~~~-----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          127 IDILFMD-----CDVFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             EEEEEEE-----TTTSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CCEEEEc-----CChhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            4766654     333446789999999999999988866544

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=86.52  E-value=0.65  Score=30.74  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=23.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|+++..-. +   .++...+++++++.|+|||++++.-
T Consensus       147 ~D~I~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          147 VDVLYVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEEEECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            488765422 2   2334445566677999999999873

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=86.44  E-value=0.53  Score=28.31  Aligned_cols=40  Identities=10%  Similarity=-0.066  Sum_probs=26.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++...+| -..++..+.+.+ .+.|+|||.+++.....
T Consensus       111 ~D~i~~~~~~~-~~~~~~~~~~~~-~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          111 FTVAFMAPPYA-MDLAALFGELLA-SGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEEEEECCCTT-SCTTHHHHHHHH-HTCEEEEEEEEEEEETT
T ss_pred             eEEEEECCCCc-hhHHHHHHHHHh-hcccCCCcEEEEEeCCc
Confidence            59999887776 233333333333 58999999988765533

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=86.42  E-value=0.49  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.078  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEE
Q 034380           23 DLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus        23 ~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .....+++.+.+.|+|||+++++
T Consensus       153 ~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          153 CTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHccCCcEEEEE
Confidence            44568999999999999999985

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=86.33  E-value=0.11  Score=34.16  Aligned_cols=37  Identities=8%  Similarity=0.026  Sum_probs=30.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      +|++++-+++|.. ++ -...+.++.++|+|||.+|-.+
T Consensus       116 ~DvVLa~k~LHlL-~~-~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          116 YDVVFLLKMLPVL-KQ-QDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEEEEEETCHHHH-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred             cChhhHhhHHHhh-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence            4999999999999 43 3444559999999998888888

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=85.92  E-value=0.65  Score=30.40  Aligned_cols=33  Identities=9%  Similarity=-0.010  Sum_probs=25.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|+++...+.         ..++++.+.|+|||++++.....
T Consensus       149 fD~v~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          149 MDAIIRIYAP---------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             EEEEEEESCC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             eeEEEEeCCh---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            3988875442         24899999999999999987643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=85.72  E-value=0.41  Score=32.30  Aligned_cols=39  Identities=13%  Similarity=0.038  Sum_probs=27.3

Q ss_pred             ceEeEecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLC--LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~--~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++-...+.-+.+..  .++++++++.|+|||.+++.-
T Consensus       152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            488887443332222222  689999999999999998863

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=85.58  E-value=0.83  Score=30.44  Aligned_cols=27  Identities=15%  Similarity=0.186  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380           26 LKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      .++|+++.+.|+|||++++........
T Consensus       191 ~~~l~~~~~~LkpgG~lv~stcs~~~~  217 (274)
T 3ajd_A          191 KELIDIGIDLLKKDGELVYSTCSMEVE  217 (274)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred             HHHHHHHHHhCCCCCEEEEEECCCChH
Confidence            689999999999999998877554433

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=85.41  E-value=0.3  Score=31.76  Aligned_cols=33  Identities=9%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|+++...+    .+  ..++++.+.+.|+|||++++.+
T Consensus       142 fD~V~~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          142 YDIVTARAV----AR--LSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEEEEECC----SC--HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccEEEEecc----CC--HHHHHHHHHHhcCCCCEEEEEe
Confidence            499998663    22  5789999999999999998874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=85.38  E-value=0.34  Score=30.40  Aligned_cols=34  Identities=9%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|+++... +++     ..++++++++.|+|||.+++...
T Consensus       133 ~D~i~~~~-~~~-----~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          133 FDGVISRA-FAS-----LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             EEEEECSC-SSS-----HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             cCEEEEec-cCC-----HHHHHHHHHHhcCCCcEEEEEeC
Confidence            49888643 222     46889999999999999998743

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=85.36  E-value=0.15  Score=33.19  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=27.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++.     .+......+++++.+.|+|||.+++.+....
T Consensus       143 fD~V~~~-----~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~  180 (232)
T 3ntv_A          143 YDMIFID-----AAKAQSKKFFEIYTPLLKHQGLVITDNVLYH  180 (232)
T ss_dssp             EEEEEEE-----TTSSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred             ccEEEEc-----CcHHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence            4888754     3344467799999999999999977554443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=85.29  E-value=0.46  Score=30.48  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=25.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++...+|...        +++.+.|+|||++++.-
T Consensus       164 fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          164 YNAIHVGAAAPDTP--------TELINQLASGGRLIVPV  194 (227)
T ss_dssp             EEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCchHHHH--------HHHHHHhcCCCEEEEEE
Confidence            49999999998766        56788899999998864

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=85.25  E-value=0.64  Score=29.87  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     +.++  ..++++++.+.|+|||++++....
T Consensus       159 ~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          159 FHAAFV-----DVRE--PWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             BSEEEE-----CSSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            488876     3443  257799999999999999998753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=84.99  E-value=0.54  Score=30.96  Aligned_cols=37  Identities=22%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++...     ......+++.+.+.|+|||.+++.+.+.
T Consensus       157 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          157 YDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             BSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            488876432     3346788999999999999998766443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=84.77  E-value=1.1  Score=32.68  Aligned_cols=34  Identities=15%  Similarity=0.459  Sum_probs=25.1

Q ss_pred             ccCCChHHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 034380           17 LHDWGDDLC-------LKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus        17 lh~~~d~~~-------~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      ...|+.++.       .++|+++.+.|+|||++++....+.
T Consensus       210 ~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          210 LKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             HhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            345665543       4789999999999999988765443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=84.60  E-value=0.46  Score=31.97  Aligned_cols=39  Identities=18%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             ceEeEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDL--CLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~--~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++-...|..+...  ..++++++++.|+|||.+++.-
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            48888744333222122  2688999999999999998863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=84.46  E-value=0.75  Score=33.06  Aligned_cols=27  Identities=7%  Similarity=0.148  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380           26 LKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      .++|+++.+.|+|||++++....+...
T Consensus       369 ~~iL~~a~~~LkpGG~lvy~tcs~~~~  395 (450)
T 2yxl_A          369 RELLESAARLVKPGGRLLYTTCSIFKE  395 (450)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence            678999999999999999988765543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=84.27  E-value=0.35  Score=31.40  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=28.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      .|++++..     +......+++++.+.|+|||.+++.+...+
T Consensus       149 fD~V~~d~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          149 FDLIFIDA-----DKRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             cCEEEECC-----CHHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            48877643     345567899999999999999988776543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=83.51  E-value=0.51  Score=30.79  Aligned_cols=35  Identities=9%  Similarity=-0.004  Sum_probs=26.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++.     .+......+++++.+.|+|||.+++.+.
T Consensus       148 fD~I~~d-----~~~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          148 YDFGFVD-----ADKPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             EEEEEEC-----SCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             cCEEEEC-----CchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            4888764     3445568899999999999998877554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=83.28  E-value=0.75  Score=33.60  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=25.4

Q ss_pred             cccCCChHHH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 034380           16 VLHDWGDDLC-------LKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus        16 vlh~~~d~~~-------~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      +...|+.++.       .++|+++.+.|+|||+++..-..+
T Consensus       192 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          192 AARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             SGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            3445666555       789999999999999998765433

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=82.93  E-value=0.59  Score=32.09  Aligned_cols=37  Identities=19%  Similarity=0.095  Sum_probs=26.9

Q ss_pred             ceEeEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFMKWVLHDWGD-DLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|+++...+.+.+.. .....+|+.+.+.|+|||+++.
T Consensus       106 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            499998765444322 2345789999999999999874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=82.92  E-value=0.63  Score=30.08  Aligned_cols=20  Identities=10%  Similarity=0.004  Sum_probs=17.6

Q ss_pred             HHHHHHHHhCCCCCEEEEEe
Q 034380           27 KILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        27 ~lL~~~~~al~~gg~l~I~e   46 (96)
                      .+++.+++.|+|||.+++.-
T Consensus       131 ~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          131 PFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEe
Confidence            48999999999999988764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=82.80  E-value=0.44  Score=31.40  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=26.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     +.++.  .++|+++.+.|+|||++++....
T Consensus       172 ~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          172 VDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             EEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred             eeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence            488877     33332  37899999999999999998754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=82.39  E-value=0.79  Score=29.18  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++...+|+.        ++++.+.|+|||++++.-.
T Consensus       163 fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          163 FDAIHVGASASEL--------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             EEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred             cCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence            4999999888865        4677889999999988754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=82.03  E-value=0.61  Score=32.15  Aligned_cols=38  Identities=18%  Similarity=0.068  Sum_probs=22.9

Q ss_pred             ceEeEecccccCCChHHH---HHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDWGDDLC---LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~---~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++-.. +.+.....   .++++++++.|+|||.+++..
T Consensus       182 fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          182 FDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEEEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            488887432 22332222   689999999999999998864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=81.97  E-value=0.52  Score=31.25  Aligned_cols=34  Identities=24%  Similarity=0.526  Sum_probs=26.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     +.++.  .++|+++.+.|+|||++++....
T Consensus       182 ~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          182 VDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             EEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEESS
T ss_pred             cCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence            488876     45543  57899999999999999998753

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=81.90  E-value=1.1  Score=31.04  Aligned_cols=36  Identities=14%  Similarity=0.159  Sum_probs=26.0

Q ss_pred             ceEeEecccccCC-ChHHHHHHHHHHHHhCCCCCEEE
Q 034380            8 AQTIFMKWVLHDW-GDDLCLKILKNCYDALPEPGKII   43 (96)
Q Consensus         8 ~D~~ll~~vlh~~-~d~~~~~lL~~~~~al~~gg~l~   43 (96)
                      .|+++...+.+.+ .......+|+.+.+.|+|||+++
T Consensus       132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            4999976632222 12335678999999999999987

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=81.78  E-value=1.7  Score=26.14  Aligned_cols=32  Identities=13%  Similarity=0.029  Sum_probs=25.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++..+      +...++++++++.  |||++++...
T Consensus       101 ~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          101 FNKAFIGGT------KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             CSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             CcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence            599988877      3346788888877  9999998874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=81.70  E-value=0.51  Score=30.62  Aligned_cols=37  Identities=11%  Similarity=0.238  Sum_probs=27.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++..     +......+++.+.+.|+|||.+++.+...
T Consensus       130 fD~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          130 YQLVFGQV-----SPMDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             EEEEEECC-----CTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             cCeEEEcC-----cHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            48887643     33345678999999999999998866554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=81.52  E-value=0.37  Score=31.47  Aligned_cols=20  Identities=20%  Similarity=0.257  Sum_probs=18.0

Q ss_pred             HHHHHHHHHhCCCCCEEEEE
Q 034380           26 LKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~   45 (96)
                      .++++++.+.|+|||.+++.
T Consensus       153 ~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          153 NTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEE
Confidence            47999999999999999984

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=81.33  E-value=0.84  Score=31.75  Aligned_cols=40  Identities=10%  Similarity=0.125  Sum_probs=28.0

Q ss_pred             ceEeEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDL--CLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~--~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++-...|......  ..++++.|++.|+|||.+++.-.
T Consensus       160 fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          160 RDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             EEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            49888754444332221  26899999999999999887654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=81.00  E-value=0.57  Score=30.69  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=18.3

Q ss_pred             HHHHHHHHHhCCCCCEEEEEe
Q 034380           26 LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e   46 (96)
                      ..+|+.+++.|+|||.+++.-
T Consensus       148 ~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          148 PTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCEEEEEe
Confidence            368999999999999998763

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=80.77  E-value=0.7  Score=29.25  Aligned_cols=23  Identities=9%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhCCCCCEEEEEee
Q 034380           25 CLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus        25 ~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      +..+|+.+.+.|+|||++++.-.
T Consensus       118 ~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A          118 GQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHccCCCEEEEEEc
Confidence            56789999999999999987665

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=80.75  E-value=1.3  Score=28.29  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhCCCCCEEEEEe
Q 034380           26 LKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        26 ~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .++|+.+++.|+|||.+++.-
T Consensus       133 ~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          133 SHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            578999999999999998863

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=80.41  E-value=1.2  Score=27.18  Aligned_cols=41  Identities=7%  Similarity=-0.088  Sum_probs=26.3

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++++....|....+...+.+. ..+.|+|||.+++.....
T Consensus       117 fD~i~~~~~~~~~~~~~~~~~l~-~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          117 FDLVLLDPPYAKQEIVSQLEKML-ERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             EEEEEECCCGGGCCHHHHHHHHH-HTTCEEEEEEEEEEEETT
T ss_pred             CCEEEECCCCCchhHHHHHHHHH-HhcccCCCCEEEEEeCCc
Confidence            49998877766444444443332 267799999998765543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=80.21  E-value=0.99  Score=28.67  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=25.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      .|++++...++...        +++.+.|+|||++++...
T Consensus       152 fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          152 YDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             cCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence            49999888887654        577889999999998754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=80.05  E-value=0.87  Score=31.15  Aligned_cols=39  Identities=8%  Similarity=0.006  Sum_probs=28.1

Q ss_pred             ceEeEecccccCC--Ch-HH--HHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMKWVLHDW--GD-DL--CLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~~vlh~~--~d-~~--~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++....|..  .. +.  ..++++++++.|+|||.+++.-
T Consensus       152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            4988886555431  11 11  3688999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-19
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	8e-18
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	3e-17
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	6e-06
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-05

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 76.3 bits (187), Expect = 3e-19
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MF  VP+   + +K V H+W D+ C++ L NC+ AL   GK+I+VE I+PE P T   SK
Sbjct: 133 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 192

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +S L   +  +  G +ERT ++++ L+
Sbjct: 193 LVSTLDNLMF-ITVGGRERTEKQYEKLS 219

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 72.8 bits (178), Expect = 8e-18
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALP---EPGKIIVVESIMPEFPETDI 57
           MF  +P A  + +K++LH+W D  CL+ILK C +A+    + GK+ +++ ++ +  + + 
Sbjct: 132 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 191

Query: 58  ISKNISRLHITVSNLFPGAKERTLEEFKSLA 88
           +++   +L + V+      KER  EE+K L 
Sbjct: 192 VTQ--IKLLMDVNMACLNGKERNEEEWKKLF 220

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 71.4 bits (174), Expect = 3e-17
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query: 1   MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISK 60
           MFV +PKA  +FMKW+ HDW D+ CLK LKNCY+ALP+ GK+IV E I+P  P++ + +K
Sbjct: 133 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATK 192

Query: 61  NISRLHITVSNLFPGAKERTLEEFKSLA 88
            +  + + +    PG KERT +EF+ LA
Sbjct: 193 GVVHIDVIMLAHNPGGKERTQKEFEDLA 220

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 40.4 bits (93), Expect = 6e-06
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 11  IFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVS 70
           I + +VL +W D   ++IL  C +AL   G+I++ E         +     +    +   
Sbjct: 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV-- 207

Query: 71  NLFPGAKERTLEEFKSLA 88
             F G   RT E++  LA
Sbjct: 208 --FLGGALRTREKWDGLA 223

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 11  IFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVS 70
           + + +VL +W D+  L IL+ C  AL   G+++V++    E    D     +  L +   
Sbjct: 151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLT- 209

Query: 71  NLFPGAKERTLEEFKSLA 88
             F G + RT +E   LA
Sbjct: 210 --FMGGRVRTRDEVVDLA 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.96
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.96
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.92
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.88
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.26
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.01
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.92
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.91
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.72
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.53
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.37
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.36
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.2
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.2
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.14
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.11
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.07
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.06
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.01
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.75
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.57
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.41
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.28
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.99
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.88
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.82
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.51
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.12
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.86
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.76
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.5
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.39
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	93.2
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	93.08
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	91.85
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	91.33
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	90.91
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	90.81
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.96
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	89.35
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	88.19
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	87.89
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	87.75
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	85.99
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	85.57
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	84.67
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	82.69

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=9.4e-31  Score=176.63  Aligned_cols=94  Identities=37%  Similarity=0.586  Sum_probs=85.7

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|.+|+|++++|||||+|++|++||++++++|+|||+|+|+|.++++++..+........+|+.|++.+ +|++||
T Consensus       133 ~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert  211 (244)
T d1fp1d2         133 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERT  211 (244)
T ss_dssp             TTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             cccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCC
Confidence            6899999999999999999999999999999999999999999999999988765544555678899999877 999999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++|+++|||+.
T Consensus       212 ~~e~~~ll~~AGF~~  226 (244)
T d1fp1d2         212 EKQYEKLSKLSGFSK  226 (244)
T ss_dssp             HHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHcCCCc
Confidence            999999999999973

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=2.6e-29  Score=169.45  Aligned_cols=93  Identities=28%  Similarity=0.605  Sum_probs=83.5

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCC---CEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCc
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEP---GKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAK   77 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~g---g~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~   77 (96)
                      ||+++|.+|+|++++|||||+|++|++||++|++||+||   |+++|+|.++++.+..+........+|++|++ + +|+
T Consensus       132 ~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~  209 (244)
T d1fp2a2         132 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGK  209 (244)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCC
T ss_pred             cccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCc
Confidence            688999899999999999999999999999999999998   89999999999887665444455678998886 4 899


Q ss_pred             cCCHHHHHHHHHhhCcCC
Q 034380           78 ERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        78 ~Rt~~e~~~l~~~AG~~v   95 (96)
                      +||.+||++||++|||++
T Consensus       210 ert~~e~~~ll~~AGf~~  227 (244)
T d1fp2a2         210 ERNEEEWKKLFIEAGFQH  227 (244)
T ss_dssp             CEEHHHHHHHHHHTTCCE
T ss_pred             CCCHHHHHHHHHHcCCce
Confidence            999999999999999975

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.95  E-value=6.6e-29  Score=167.06  Aligned_cols=95  Identities=47%  Similarity=0.917  Sum_probs=85.3

Q ss_pred             CCCCCCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCC
Q 034380            1 MFVEVPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERT   80 (96)
Q Consensus         1 ~F~~~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt   80 (96)
                      ||+++|.+|+|++++|+|+|+|++|++||++++++|+|||+++|+|.++++....+........+|+.||..+.+|++||
T Consensus       133 ~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert  212 (243)
T d1kyza2         133 MFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERT  212 (243)
T ss_dssp             TTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEE
T ss_pred             ccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCC
Confidence            67999999999999999999999999999999999999999999999998776554333445678999998776899999


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      .+||++|+++|||++
T Consensus       213 ~~e~~~ll~~AGf~~  227 (243)
T d1kyza2         213 QKEFEDLAKGAGFQG  227 (243)
T ss_dssp             HHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHcCCCc
Confidence            999999999999975

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.92  E-value=1.2e-25  Score=151.91  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=77.2

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      ||+++|. +|+|+++++||+|+|++|.++|++|+++|+|||+++|+|.+.+++....  ......+|+.|+..+ +|++|
T Consensus       140 ~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~-~g~~r  216 (256)
T d1qzza2         140 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFM-GGRVR  216 (256)
T ss_dssp             TTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCC
T ss_pred             ccccccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc--HHHHHHHHHHHHhhC-CCccC
Confidence            5678886 5999999999999999999999999999999999999998866543322  124677899999987 99999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++|+++|||++
T Consensus       217 t~~e~~~ll~~AGf~~  232 (256)
T d1qzza2         217 TRDEVVDLAGSAGLAL  232 (256)
T ss_dssp             CHHHHHHHHHTTTEEE
T ss_pred             CHHHHHHHHHHCCCce
Confidence            9999999999999975

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.88  E-value=1.6e-23  Score=140.71  Aligned_cols=91  Identities=26%  Similarity=0.436  Sum_probs=78.9

Q ss_pred             CCCCCCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccC
Q 034380            1 MFVEVPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKER   79 (96)
Q Consensus         1 ~F~~~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~R   79 (96)
                      ||++.|. +|+|+++++||+|+|+++.++|++++++|+|||+++|.|...+++...+.   ....+|+.|+..+ +|++|
T Consensus       139 ~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~---~~~~~dl~~~~~~-~g~~r  214 (253)
T d1tw3a2         139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE---QFTELDLRMLVFL-GGALR  214 (253)
T ss_dssp             TTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSH---HHHHHHHHHHHHH-SCCCC
T ss_pred             chhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchh---HHHHhhHHHHhhC-CCcCC
Confidence            4677775 59999999999999999999999999999999999999987766544331   3457899999877 99999


Q ss_pred             CHHHHHHHHHhhCcCC
Q 034380           80 TLEEFKSLAIGLLNSV   95 (96)
Q Consensus        80 t~~e~~~l~~~AG~~v   95 (96)
                      |.+||++|+++|||++
T Consensus       215 t~~e~~~ll~~AGf~~  230 (253)
T d1tw3a2         215 TREKWDGLAASAGLVV  230 (253)
T ss_dssp             BHHHHHHHHHHTTEEE
T ss_pred             CHHHHHHHHHHCCCeE
Confidence            9999999999999975

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.26  E-value=4.3e-12  Score=84.57  Aligned_cols=74  Identities=20%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|+++|++..++|++|+++|+|||.++|.|.+......         .+|     ...++..||.++|+++
T Consensus       159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d-----~~d~~~~rs~~~~~~l  224 (254)
T d1xtpa_         159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHH
T ss_pred             cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eec-----ccCCceeCCHHHHHHH
Confidence            49999999999999999999999999999999999999987664421         122     1236678999999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |++|||+|
T Consensus       225 ~~~aGf~i  232 (254)
T d1xtpa_         225 FNESGVRV  232 (254)
T ss_dssp             HHHHTCCE
T ss_pred             HHHcCCEE
Confidence            99999976

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.9e-10  Score=74.44  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=61.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++..++|++++++..++|+++++.|+|||.++|.|.+.++...          ++     ...+...||.++|+++
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~l  192 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDSSVCRDLDVVRRI  192 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTTEEEEBHHHHHHH
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCceeeCCHHHHHHH
Confidence            39999999999999999999999999999999999999987665321          11     1125677899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |++|||++
T Consensus       193 ~~~aGf~i  200 (222)
T d2ex4a1         193 ICSAGLSL  200 (222)
T ss_dssp             HHHTTCCE
T ss_pred             HHHcCCEE
Confidence            99999975

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.92  E-value=7.1e-10  Score=71.41  Aligned_cols=80  Identities=9%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhh-hhcCCCCccCCHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITV-SNLFPGAKERTLEEFKS   86 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~m-l~~~~~g~~Rt~~e~~~   86 (96)
                      .|++++..++|+++|.  .++|+++++.|+|||+++|.+...++...      +...++... .....+.+..+.++|.+
T Consensus        82 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDWLK  153 (231)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             cccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHHHHH
Confidence            3999999999999886  57899999999999999999987765321      111121111 11122567889999999


Q ss_pred             HHHhhCcCC
Q 034380           87 LAIGLLNSV   95 (96)
Q Consensus        87 l~~~AG~~v   95 (96)
                      ++++|||.+
T Consensus       154 ~l~~aGf~~  162 (231)
T d1vl5a_         154 MLEEAGFEL  162 (231)
T ss_dssp             HHHHHTCEE
T ss_pred             HHHHCCCEE
Confidence            999999864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=5.9e-10  Score=72.13  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCC------------
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFP------------   74 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~------------   74 (96)
                      .+|++++..++|.+++++-.++|++++++|+|||.+++.|...++.+..... .......+.......            
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALE  186 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHH
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence            4599999999999999999999999999999999999999887765321100 000111110100000            


Q ss_pred             -CCccCCHHHHHHHHHhhCcC
Q 034380           75 -GAKERTLEEFKSLAIGLLNS   94 (96)
Q Consensus        75 -~g~~Rt~~e~~~l~~~AG~~   94 (96)
                       .-...|.+++.++|++|||+
T Consensus       187 ~~~~~~s~~~~~~~L~~aGF~  207 (225)
T d1im8a_         187 NVMRTDSIETHKVRLKNVGFS  207 (225)
T ss_dssp             HHCCCCCHHHHHHHHHHHTCS
T ss_pred             cccCCCCHHHHHHHHHHcCCC
Confidence             01347899999999999986

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=5.3e-09  Score=67.80  Aligned_cols=84  Identities=17%  Similarity=0.295  Sum_probs=62.0

Q ss_pred             CCCcc--eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhh-hhhhhcCCCCccCC
Q 034380            4 EVPKA--QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLH-ITVSNLFPGAKERT   80 (96)
Q Consensus         4 ~~P~~--D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~d-l~ml~~~~~g~~Rt   80 (96)
                      |+|.+  |+++...++|+++|.  .++|+++++.|+|||++++.+...++.+   ..   ..+++ +.-.....+.+..+
T Consensus        77 ~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~  148 (234)
T d1xxla_          77 PFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VL---DEFVNHLNRLRDPSHVRESS  148 (234)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HH---HHHHHHHHHHHCTTCCCCCB
T ss_pred             cccccccceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH---HH---HHHHHHHHhhCCCcccccCC
Confidence            34544  999999999999884  6889999999999999999998766432   11   11111 11122223788899


Q ss_pred             HHHHHHHHHhhCcCC
Q 034380           81 LEEFKSLAIGLLNSV   95 (96)
Q Consensus        81 ~~e~~~l~~~AG~~v   95 (96)
                      ..+|..+++++|+.+
T Consensus       149 ~~~~~~~~~~~gf~~  163 (234)
T d1xxla_         149 LSEWQAMFSANQLAY  163 (234)
T ss_dssp             HHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCce
Confidence            999999999999864

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=2e-08  Score=63.76  Aligned_cols=78  Identities=18%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      |++++..+||+++|.  .++|+++++.|+|||+++|.+...+..    ............  ....+.+.+|.+++.+++
T Consensus        93 D~I~~~~~l~h~~d~--~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~s~~~l~~~l  164 (208)
T d1vlma_          93 DFALMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESF----LGREYEKNKEKS--VFYKNARFFSTEELMDLM  164 (208)
T ss_dssp             EEEEEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTTC---CCSTTCCCCCHHHHHHHH
T ss_pred             ccccccccccccccc--ccchhhhhhcCCCCceEEEEecCCcch----hHHhhhhccccc--cccccccCCCHHHHHHHH
Confidence            999999999999874  688999999999999999998643321    000011111111  112367788999999999


Q ss_pred             HhhCcC
Q 034380           89 IGLLNS   94 (96)
Q Consensus        89 ~~AG~~   94 (96)
                      +++||+
T Consensus       165 ~~~Gf~  170 (208)
T d1vlma_         165 RKAGFE  170 (208)
T ss_dssp             HHTTCE
T ss_pred             HHcCCe
Confidence            999986

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.67  E-value=3.6e-08  Score=65.50  Aligned_cols=77  Identities=16%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      |+++...++|+++|.  .++|++++++|+|||++++.+.+..+......   .....+-..     .....|..+|.+++
T Consensus       137 D~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~s~~~~~~~l  206 (282)
T d2o57a1         137 DFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILDRIK-----LHDMGSLGLYRSLA  206 (282)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHHHHT-----CSSCCCHHHHHHHH
T ss_pred             chhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhH---HHHHHHHhc-----cCCCCCHHHHHHHH
Confidence            999999999999976  57899999999999999999988776543321   112222111     12346889999999


Q ss_pred             HhhCcCC
Q 034380           89 IGLLNSV   95 (96)
Q Consensus        89 ~~AG~~v   95 (96)
                      +++||.+
T Consensus       207 ~~~Gf~~  213 (282)
T d2o57a1         207 KECGLVT  213 (282)
T ss_dssp             HHTTEEE
T ss_pred             HHcCCce
Confidence            9999863

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=3.8e-07  Score=61.10  Aligned_cols=92  Identities=16%  Similarity=0.271  Sum_probs=67.2

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-----chhhhhhhhhhhhhhhcCCCCcc
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPET-----DIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~-----~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      +|. .|.++...+++++++..-..++++|++.|+|||+++|...+..++...     ..........|...--..++|.-
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~l  193 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL  193 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcc
Confidence            444 499999999999999888899999999999999999998766543210     00001111223332223568999


Q ss_pred             CCHHHHHHHHHhhCcCCC
Q 034380           79 RTLEEFKSLAIGLLNSVK   96 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v~   96 (96)
                      .|..++.+.++++||.|.
T Consensus       194 PS~~~l~~~~e~aGf~v~  211 (280)
T d2fk8a1         194 PSTEMMVEHGEKAGFTVP  211 (280)
T ss_dssp             CCHHHHHHHHHHTTCBCC
T ss_pred             cchHhhhhhHHhhccccc
Confidence            999999999999999873

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5e-07  Score=58.61  Aligned_cols=78  Identities=13%  Similarity=-0.045  Sum_probs=59.0

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|+++...++|+++|.  .++|+++++.|+|||+++|.+...........   ....+.     ........+..+|..+
T Consensus       101 fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~  170 (245)
T d1nkva_         101 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEE---IAQACG-----VSSTSDFLTLPGLVGA  170 (245)
T ss_dssp             EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH---HHHTTT-----CSCGGGSCCHHHHHHH
T ss_pred             eeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHH---HHHHhc-----cCCCcccCCHHHHHHH
Confidence            4999999999999975  67899999999999999999987665433211   111111     1124557899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      ++++|+.+
T Consensus       171 ~~~aG~~~  178 (245)
T d1nkva_         171 FDDLGYDV  178 (245)
T ss_dssp             HHTTTBCC
T ss_pred             HHHcCCEE
Confidence            99999975

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.5e-08  Score=62.26  Aligned_cols=74  Identities=9%  Similarity=-0.076  Sum_probs=55.1

Q ss_pred             ceEeEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGD--DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d--~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|+++...++|+.+.  ++-..+++++.+.|+|||.+++.+.........         .+     ........|.++++
T Consensus       153 fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~  218 (257)
T d2a14a1         153 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV---------GK-----REFSCVALEKGEVE  218 (257)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE---------TT-----EEEECCCCCHHHHH
T ss_pred             ccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee---------cc-----ccccccCCCHHHHH
Confidence            399999999998753  567899999999999999999988753321100         00     00123456899999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      ++|++|||+|
T Consensus       219 ~~l~~aGf~v  228 (257)
T d2a14a1         219 QAVLDAGFDI  228 (257)
T ss_dssp             HHHHHTTEEE
T ss_pred             HHHHHCCCEE
Confidence            9999999975

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=5.4e-06  Score=55.56  Aligned_cols=91  Identities=13%  Similarity=0.121  Sum_probs=63.4

Q ss_pred             CCc-ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC-----CCchhhhhhhhhhhhhhhcCCCCcc
Q 034380            5 VPK-AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP-----ETDIISKNISRLHITVSNLFPGAKE   78 (96)
Q Consensus         5 ~P~-~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~-----~~~~~~~~~~~~dl~ml~~~~~g~~   78 (96)
                      +|. .|.++.-.++.+.....-..++++|++.|+|||+++|...+...+.     ..+.........+...--..++|.-
T Consensus       124 ~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l  203 (285)
T d1kpga_         124 FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  203 (285)
T ss_dssp             CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence            454 4888877777778877667899999999999999999998754321     1111111112223222223458999


Q ss_pred             CCHHHHHHHHHhhCcCC
Q 034380           79 RTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        79 Rt~~e~~~l~~~AG~~v   95 (96)
                      .|..++..+++++||.|
T Consensus       204 Psl~~~~~~~e~agf~v  220 (285)
T d1kpga_         204 PSIPMVQECASANGFTV  220 (285)
T ss_dssp             CCHHHHHHHHHTTTCEE
T ss_pred             CChhhHHHHHHHhchhh
Confidence            99999999999999976

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.3e-07  Score=60.47  Aligned_cols=74  Identities=11%  Similarity=0.091  Sum_probs=54.9

Q ss_pred             ceEeEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHH
Q 034380            8 AQTIFMKWVLHDWGD--DLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFK   85 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d--~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~   85 (96)
                      .|++++..+||..+.  ++-.+.|+++++.|+|||.+++.+..-.....          .+-.   .. ..-..|.++++
T Consensus       158 fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~----------~~~~---~~-~~~~~t~e~v~  223 (263)
T d2g72a1         158 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----------AGEA---RL-TVVPVSEEEVR  223 (263)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE----------ETTE---EE-ECCCCCHHHHH
T ss_pred             cCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc----------cCCc---cc-ccCCCCHHHHH
Confidence            499999999988753  46789999999999999999998875432110          0000   00 12346999999


Q ss_pred             HHHHhhCcCC
Q 034380           86 SLAIGLLNSV   95 (96)
Q Consensus        86 ~l~~~AG~~v   95 (96)
                      ++|++|||+|
T Consensus       224 ~~l~~aGf~v  233 (263)
T d2g72a1         224 EALVRSGYKV  233 (263)
T ss_dssp             HHHHHTTEEE
T ss_pred             HHHHHCCCeE
Confidence            9999999976

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.14  E-value=1.2e-06  Score=58.31  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=35.4

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++.+++|+++|.  .++|+++++.|+|||+++|.|..
T Consensus        95 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ceEEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECC
Confidence            4999999999999986  47899999999999999999953

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7e-06  Score=53.90  Aligned_cols=80  Identities=13%  Similarity=-0.140  Sum_probs=55.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSL   87 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l   87 (96)
                      .|++++.+++|+++|.  .+.|+++++.|+|||.++|...-  +.  ......+...+.  ..........++.++|.++
T Consensus       124 fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~--~~--~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~  195 (280)
T d1jqea_         124 WDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVS--GS--SGWDKLWKKYGS--RFPQDDLCQYITSDDLTQM  195 (280)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEC--TT--SHHHHHHHHHGG--GSCCCTTSCCCCHHHHHHH
T ss_pred             eeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEec--Cc--chHHHHHHHHHH--hcCCCcccccCCHHHHHHH
Confidence            3999999999999885  58899999999999999987652  11  111000111111  1112235677899999999


Q ss_pred             HHhhCcCC
Q 034380           88 AIGLLNSV   95 (96)
Q Consensus        88 ~~~AG~~v   95 (96)
                      |.++|+.+
T Consensus       196 L~~~G~~~  203 (280)
T d1jqea_         196 LDNLGLKY  203 (280)
T ss_dssp             HHHHTCCE
T ss_pred             HHHCCCce
Confidence            99999863

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.07  E-value=1.1e-06  Score=55.74  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      |++++++||+.++++...++|++++++|+|||.|+|=
T Consensus       134 DvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         134 DAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            9999999999999999999999999999999987654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.06  E-value=1.9e-06  Score=54.34  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=37.8

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      |++++..++|++++.+..++|+++.+.|+|||+++|.....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            99999999999999999999999999999999999877543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.01  E-value=8.7e-06  Score=52.03  Aligned_cols=84  Identities=20%  Similarity=0.143  Sum_probs=53.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHH-HhCCCCCEEEEEeeecCCCCCCch-----hhhhhhhhhhhhhhcCCCCccCCH
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCY-DALPEPGKIIVVESIMPEFPETDI-----ISKNISRLHITVSNLFPGAKERTL   81 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~-~al~~gg~l~I~e~~~~~~~~~~~-----~~~~~~~~dl~ml~~~~~g~~Rt~   81 (96)
                      .|++++.+++|+.+|.  .++|++++ +.|+|||.++|.-+..........     .........-. .. ..+-+.+|.
T Consensus        82 fD~I~~~~vleh~~d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~h~~~~~~  157 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-FA-HGHRCTYAL  157 (225)
T ss_dssp             EEEEEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-HH-TTCCCCCCH
T ss_pred             cccccccceeEecCCH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccc-cc-eeeeeccCH
Confidence            3999999999999886  67799998 679999999996442211000000     00000000000 11 225677899


Q ss_pred             HHHHHHHHhhCcCC
Q 034380           82 EEFKSLAIGLLNSV   95 (96)
Q Consensus        82 ~e~~~l~~~AG~~v   95 (96)
                      ++++++++++|++|
T Consensus       158 ~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1         158 DTLERDASRAGLQV  171 (225)
T ss_dssp             HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHCCCEE
Confidence            99999999999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.75  E-value=6.1e-05  Score=50.41  Aligned_cols=86  Identities=14%  Similarity=0.317  Sum_probs=61.6

Q ss_pred             ceEeEecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-------CchhhhhhhhhhhhhhhcC
Q 034380            8 AQTIFMKWVLHDWGD-------DLCLKILKNCYDALPEPGKIIVVESIMPEFPE-------TDIISKNISRLHITVSNLF   73 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d-------~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~-------~~~~~~~~~~~dl~ml~~~   73 (96)
                      .|.++.-.++.+.++       +.=.+++++|.+.|+|||+++|...+.++...       .|.  ......+...--..
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~--~~~~~~~fi~kyiF  204 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPM--SLLRFIKFILTEIF  204 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCH--HHHHHHHHHHHHTC
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCch--hhcccchHHHHHhc
Confidence            488888888877776       33468999999999999999999988765421       110  01112222222234


Q ss_pred             CCCccCCHHHHHHHHHhhCcCC
Q 034380           74 PGAKERTLEEFKSLAIGLLNSV   95 (96)
Q Consensus        74 ~~g~~Rt~~e~~~l~~~AG~~v   95 (96)
                      ++|.--|..++...++++||+|
T Consensus       205 pgg~lps~~~~~~~~e~~gl~v  226 (291)
T d1kpia_         205 PGGRLPRISQVDYYSSNAGWKV  226 (291)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEE
T ss_pred             CCCCCCCHHHHHhhhccccccc
Confidence            5899999999999999999986

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=3.7e-05  Score=47.99  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|+++...++|..++++..++|++++++|+|||.+++.....
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1          96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             EEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             ccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            399999999999999999999999999999999999987653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.41  E-value=0.00015  Score=44.17  Aligned_cols=43  Identities=5%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPE   51 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~   51 (96)
                      |+++.+.++|..++++..+.++++++.|+|||++++.......
T Consensus       101 D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_         101 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             eEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            9999999999999999999999999999999999887765443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.28  E-value=0.00022  Score=46.05  Aligned_cols=65  Identities=11%  Similarity=-0.092  Sum_probs=47.5

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCchhhhhhhhhhhhhhhcCCCCccCCHHHHHHHH
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFPETDIISKNISRLHITVSNLFPGAKERTLEEFKSLA   88 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~g~~Rt~~e~~~l~   88 (96)
                      |+.++.+.+|.+++  ...++++++..|+|||+++|.+.....+...++.                    .+.++..+.|
T Consensus       143 ~v~~i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~--------------------~~~~e~~~~L  200 (230)
T d1g8sa_         143 KVDVIYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK--------------------EIFKEQKEIL  200 (230)
T ss_dssp             CEEEEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH--------------------HHHHHHHHHH
T ss_pred             eeEEeeccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCHH--------------------HHHHHHHHHH
Confidence            77777778887765  5777999999999999999998765544332211                    1235788899


Q ss_pred             HhhCcCC
Q 034380           89 IGLLNSV   95 (96)
Q Consensus        89 ~~AG~~v   95 (96)
                      +++||++
T Consensus       201 ~~aGF~i  207 (230)
T d1g8sa_         201 EAGGFKI  207 (230)
T ss_dssp             HHHTEEE
T ss_pred             HHcCCEE
Confidence            9999864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.99  E-value=0.0003  Score=44.71  Aligned_cols=39  Identities=15%  Similarity=0.122  Sum_probs=33.4

Q ss_pred             ceEeEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            8 AQTIFMK-WVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         8 ~D~~ll~-~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .|++++. .++|.++.++..+.|+++++.|+|||+++|.-
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            3887775 68888888889999999999999999998743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00026  Score=44.64  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             eEeEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEee
Q 034380            9 QTIFM-KWVLHDWGDDLCLKILKNCYDALPEPGKIIVVES   47 (96)
Q Consensus         9 D~~ll-~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~   47 (96)
                      |+++. ..++|+++|.  .++|+++++.|+|||.++|...
T Consensus       104 D~ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         104 EAVLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence            98885 6799999887  4689999999999999988653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00052  Score=43.56  Aligned_cols=45  Identities=7%  Similarity=-0.098  Sum_probs=40.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      .|+++-+.++|.+++++..+.++++.++|+|||++++.-...++.
T Consensus       130 fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~  174 (229)
T d2bzga1         130 FDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPT  174 (229)
T ss_dssp             EEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT
T ss_pred             eeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCC
Confidence            399999999999999999999999999999999998887765543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.51  E-value=0.00099  Score=42.74  Aligned_cols=38  Identities=16%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             ceEeEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDW--GDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~--~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++..++|+.  +.++..++++++.+.|+|||.+++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            4999999999986  4567889999999999999998875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.0019  Score=42.24  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=29.0

Q ss_pred             eEeEe-cccccCCCh-----HHHHHHHHHHHHhCCCCCEEEE
Q 034380            9 QTIFM-KWVLHDWGD-----DLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         9 D~~ll-~~vlh~~~d-----~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      |++++ ..+++++++     ++..++|+++++.|+|||.+++
T Consensus       131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            76664 567777754     5678899999999999998777

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.86  E-value=0.005  Score=37.90  Aligned_cols=44  Identities=20%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             CCCCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380            2 FVEVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus         2 F~~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      |++++.  .|++++.-.+|. ..+...++++++.+.|+|||+++|+-
T Consensus       112 ~~~~~~~~fD~Ii~~~p~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         112 YENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             TTTCTTSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhccCCceEEEEcccEEe-cchhhhhHHHHHHHhcCcCcEEEEEE
Confidence            445554  499987666664 45667889999999999999998753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0056  Score=42.46  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             CCcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380            5 VPKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus         5 ~P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      ++.+|++++-+.+|   +++..+.|+++.+.|+|||+|++.|.+.+..
T Consensus       295 ~~~adVV~inn~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         295 IPQCDVILVNNFLF---DEDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             GGGCSEEEECCTTC---CHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cccceEEEEecccC---chHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence            34568888766543   2346788999999999999999999776654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.50  E-value=0.0062  Score=38.47  Aligned_cols=37  Identities=22%  Similarity=0.049  Sum_probs=29.7

Q ss_pred             ceEeEe-cccccCC-ChHHHHHHHHHHHHhCCCCCEEEE
Q 034380            8 AQTIFM-KWVLHDW-GDDLCLKILKNCYDALPEPGKIIV   44 (96)
Q Consensus         8 ~D~~ll-~~vlh~~-~d~~~~~lL~~~~~al~~gg~l~I   44 (96)
                      .|++++ .+++|.+ +.++..++|+++++.|+|||.+++
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            397775 4666665 667888999999999999998875

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0096  Score=39.75  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             cceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 034380            7 KAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEF   52 (96)
Q Consensus         7 ~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~   52 (96)
                      .+|++++.+.+| +  ++..+.|+++.+.|+|||+|++.+.+.+..
T Consensus       230 ~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         230 NTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             HCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence            367888766554 3  334677899999999999999998776643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.009  Score=37.65  Aligned_cols=33  Identities=9%  Similarity=-0.072  Sum_probs=26.0

Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 034380           12 FMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVE   46 (96)
Q Consensus        12 ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e   46 (96)
                      .....++++.+.  ...++++++.|+|||++++.+
T Consensus       131 ~~~~~~~~~~~~--~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccccccCH--HHHHHHHHHHcCCCcEEEEEe
Confidence            356777777764  678999999999999988754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.032  Score=35.85  Aligned_cols=31  Identities=10%  Similarity=0.067  Sum_probs=25.3

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      |+++....+|+         ++.+++.|+|||.+++..+.
T Consensus       149 D~v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         149 DAIIRIYAPCK---------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             EEEEEESCCCC---------HHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeecCCHHH---------HHHHHHHhCCCcEEEEEeeC
Confidence            99988777776         45678899999999998753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.85  E-value=0.027  Score=36.72  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             CCCc--ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 034380            4 EVPK--AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMP   50 (96)
Q Consensus         4 ~~P~--~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~   50 (96)
                      ++|.  .|++++     |.++.  ...+.+++++|+|||++++..+...
T Consensus       163 ~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             cccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCccC
Confidence            3554  387765     55665  4679999999999999999876554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=91.33  E-value=0.019  Score=37.42  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380           15 WVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus        15 ~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|++|.++.  .+.|+++.+.|+|||++++..+..
T Consensus       175 ~V~~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         175 ALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             EEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             eeEecCCCH--HHHHHHHHhhcCCCCEEEEEeCcc
Confidence            456788876  567999999999999999976543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.91  E-value=0.088  Score=32.74  Aligned_cols=31  Identities=13%  Similarity=0.103  Sum_probs=24.1

Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380           16 VLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus        16 vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .++.+.+  ...+|+++.+.|+|||+++|.+..
T Consensus       132 ~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         132 DIAQKNQ--IEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             CCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccChhh--HHHHHHHHHHHhccCCeEEEEEEc
Confidence            3444443  467899999999999999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.81  E-value=0.054  Score=33.77  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++...+++.+++        +.+.|+|||++++.
T Consensus       145 fD~I~~~~~~~~~p~~--------l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPET--------WFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHH--------HHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHH--------HHHhcCCCcEEEEE
Confidence            3999999999998863        45679999999884

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.96  E-value=0.086  Score=31.81  Aligned_cols=39  Identities=23%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             CcceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            6 PKAQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         6 P~~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      +..|++++....++     ..++++.+.+.|+|||++++.....
T Consensus        99 ~~~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          99 PDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             CCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             CCcCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEeecc
Confidence            34588887655444     3578999999999999998876533

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=89.35  E-value=0.092  Score=33.76  Aligned_cols=37  Identities=11%  Similarity=0.139  Sum_probs=28.1

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      .|+++..     +..+...++++.+++.|+|||++++.+.+.
T Consensus       185 fD~V~an-----i~~~~l~~l~~~~~~~LkpGG~lilSgil~  221 (254)
T d2nxca1         185 FDLLVAN-----LYAELHAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             EEEEEEE-----CCHHHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             cchhhhc-----cccccHHHHHHHHHHhcCCCcEEEEEecch
Confidence            4877642     334556788999999999999999877643

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.19  E-value=0.087  Score=33.88  Aligned_cols=34  Identities=6%  Similarity=-0.020  Sum_probs=25.7

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      .|++++     |.++.  .+.|++++++|+|||++++.-+.
T Consensus       155 fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         155 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESS
T ss_pred             eeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeCC
Confidence            387765     45554  46799999999999999987554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=87.89  E-value=0.36  Score=29.73  Aligned_cols=37  Identities=11%  Similarity=0.109  Sum_probs=25.5

Q ss_pred             eEeEecccccCCChHH------HHHHHHHHHHhCCCCCEEEEE
Q 034380            9 QTIFMKWVLHDWGDDL------CLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~------~~~lL~~~~~al~~gg~l~I~   45 (96)
                      |.+++-.....+....      ...+|+.+++.|+|||.|+|.
T Consensus       101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             hccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            6665554443333322      147899999999999999886

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=87.75  E-value=0.45  Score=31.04  Aligned_cols=39  Identities=10%  Similarity=-0.040  Sum_probs=32.6

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeee
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      -+++.-.+++.++.+++.++|+.+.+..+||+.|++ |..
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~-d~~  206 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETS  206 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECC
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE-Eec
Confidence            466667799999999999999999999889988664 443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.99  E-value=0.17  Score=31.73  Aligned_cols=30  Identities=17%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             ceEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 034380            8 AQTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVV   45 (96)
Q Consensus         8 ~D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~   45 (96)
                      .|++++...+++.+++        +.+.|+|||++++.
T Consensus       151 fD~I~~~~~~~~ip~~--------l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPVVPQA--------LIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhhcCHH--------HHhhcCCCcEEEEE
Confidence            3999999999988753        45689999999984

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.57  E-value=0.18  Score=31.79  Aligned_cols=25  Identities=12%  Similarity=0.024  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEeee
Q 034380           24 LCLKILKNCYDALPEPGKIIVVESI   48 (96)
Q Consensus        24 ~~~~lL~~~~~al~~gg~l~I~e~~   48 (96)
                      +...+++++++.|+|||+++|...-
T Consensus       156 ~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         156 QAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             hHHHHHHHHHHhcccCCeEEEEEEC
Confidence            4677899999999999999987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.095  Score=34.93  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=25.2

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeec
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIM   49 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~   49 (96)
                      |++++     |.++.  ...|.+++++|+|||+++++-+.+
T Consensus       182 D~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         182 DAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             ceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCCH
Confidence            76655     55543  346999999999999999976544

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.69  E-value=2.2  Score=28.04  Aligned_cols=44  Identities=11%  Similarity=0.141  Sum_probs=36.7

Q ss_pred             eEeEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 034380            9 QTIFMKWVLHDWGDDLCLKILKNCYDALPEPGKIIVVESIMPEFP   53 (96)
Q Consensus         9 D~~ll~~vlh~~~d~~~~~lL~~~~~al~~gg~l~I~e~~~~~~~   53 (96)
                      -+++.-.++..++.+++.++++.+.+..+ +|.++++|++.+..+
T Consensus       195 Tl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p  238 (328)
T d1rjda_         195 TIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQP  238 (328)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCST
T ss_pred             eEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCC
Confidence            46777889999999999999999998775 577999999976443