Citrus Sinensis ID: 034389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccEEEEEccEEEc
Coil and Loop (DISEMBL)
mydghdprLFAHFAAVAQQLGVYTAHDYADILEFLIGqwgseklegltgegrrAQEFVCGLAPRIRRLQGLADQrakklkpprvkfswifnrklsl
Flexible Loop (DISEMBL)
MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQgladqrakklkpprvkfswifnrklsl
Low Complexity Region (SEG)
MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL
Disordered region (IsUnstruct)
*******RLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLAD********PRVKFSWIFN*****
Disordered Region (DISOPRED)
**DGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGL*GEGRRAQEFVCGLAPRIRR*****************KFSWIFNRKLSL
Disordered Region (DISEMBL)
MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL
Disordered Region (DISPRO)
*****DPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q84VY3	391	Acyl-[acyl-carrier-protei	yes	no	1.0	0.245	0.721	2e-33
P46253	393	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.239	0.645	2e-30
P22243	396	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.237	0.645	1e-29
Q41319	393	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.239	0.614	1e-29
Q40731	390	Acyl-[acyl-carrier-protei	yes	no	0.979	0.241	0.635	2e-29
A2XSL4	391	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.240	0.635	3e-29
Q43593	390	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.241	0.614	5e-29
P29108	398	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.236	0.625	9e-29
P22337	396	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.237	0.614	1e-28
Q96456	396	Acyl-[acyl-carrier-protei	N/A	no	0.979	0.237	0.625	1e-28

>sp|Q84VY3|STAD6_ARATH Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES6 PE=2 SV=2

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 1/97 (1%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           M DG DP LF HF+AVAQ+L VYTA DYADILEFL+G+W  EKLEGLTGEG+RAQEFVCG
Sbjct: 295 MTDGRDPMLFEHFSAVAQRLEVYTADDYADILEFLVGRWRLEKLEGLTGEGQRAQEFVCG 354

Query: 61  LAPRIRRLQGLADQRAKKLKPP-RVKFSWIFNRKLSL 96
           LA RIRRLQ  AD+RAKKLK    V FSWIF++++S+
Sbjct: 355 LAQRIRRLQERADERAKKLKKTHEVCFSWIFDKQISV 391

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 2

>sp|P46253|STAD_SOLTU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/96 (64%), Positives = 74/96 (77%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEF +G+W  EKL GL+ EGRRAQ++VCG
Sbjct: 300 MYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFHVGRWEVEKLTGLSSEGRRAQDYVCG 359

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           LAPRIR+L+  A  RAK  K   V FSWIF +++ L
Sbjct: 360 LAPRIRKLEERAQARAKHAK--SVPFSWIFGKEIKL 393

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P22243|STAD_CARTI Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W    L GL+GEGR+AQ++VCG
Sbjct: 303 MYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCG 362

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK  + P V FSWIF+R++ L
Sbjct: 363 LPPRIRRLEERAQGRAK--EGPVVPFSWIFDRQVKL 396

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Carthamus tinctorius (taxid: 4222)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q41319|STAD_SOLCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2

 Score =  128 bits (321), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/96 (61%), Positives = 74/96 (77%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+ VAQ+LGVYTA DYADILEFL+G+W  EKL GL+GEG +A+++VCG
Sbjct: 300 MYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVCG 359

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           LAPRIR+L+  A  RAK+  P  V FSW+F + + L
Sbjct: 360 LAPRIRKLEERAQARAKQKAP--VPFSWVFGKDIKL 393

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Solanum commersonii (taxid: 4109)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q40731|STAD5_ORYSJ Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+ +W    L GL+GEGRRAQ+FVC 
Sbjct: 297 MYDGKDDNLFEHFSAVAQRLGVYTARDYADILEFLVQRWKVADLTGLSGEGRRAQDFVCT 356

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           LAPRIRRL   A  RAK+   P + FSW+++RK+ L
Sbjct: 357 LAPRIRRLDERAQARAKQA--PVIPFSWVYDRKVQL 390

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|A2XSL4|STAD5_ORYSI Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_15603 PE=3 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+ +W    L GL+GEGRRAQ+FVC 
Sbjct: 298 MYDGKDDNLFEHFSAVAQRLGVYTARDYADILEFLVQRWKVADLTGLSGEGRRAQDFVCT 357

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           LAPRIRRL   A  RAK+   P + FSW+++RK+ L
Sbjct: 358 LAPRIRRLDERAQARAKQA--PVIPFSWVYDRKVQL 391

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q43593|STAD_OLEEU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/96 (61%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF +F++VAQ+LGVYTA DYADILEFL+G+W  EKL GL+GEGR+AQ++VC 
Sbjct: 297 MYDGQDDNLFENFSSVAQRLGVYTAKDYADILEFLVGRWDIEKLTGLSGEGRKAQDYVCT 356

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  R KK       FSWIF R+++L
Sbjct: 357 LPPRIRRLEERAQSRVKKASA--TPFSWIFGREINL 390

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Olea europaea (taxid: 4146)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P29108|STAD_BRANA Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 74/96 (77%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF +F++VAQ+LGVYTA DYADILEFL+G+W  E L GL+GEG +AQE++CG
Sbjct: 305 MYDGRDESLFDNFSSVAQRLGVYTAKDYADILEFLVGRWKIESLTGLSGEGNKAQEYLCG 364

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL   A  RAK  K P+V FSWI +R++ L
Sbjct: 365 LTPRIRRLDERAQARAK--KGPKVPFSWIHDREVQL 398

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|P22337|STAD_RICCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W  +KL GL+ EG++AQ++VC 
Sbjct: 303 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 362

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK+   P + FSWIF+R++ L
Sbjct: 363 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 396

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Ricinus communis (taxid: 3988)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

>sp|Q96456|STAD_HELAN Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 74/96 (77%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF +F+AVAQ+LGVYTA DYADILEFL+G+W    L GL+GEGR+AQ++VCG
Sbjct: 303 MYDGRDDNLFENFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCG 362

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           LAPRIRRL+     RAK  +   V FSWIF+R++ L
Sbjct: 363 LAPRIRRLEERNSARAK--ESVNVPFSWIFDREVKL 396

Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.

Helianthus annuus (taxid: 4232)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 2

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2029142	391	FTM1 "FLORAL TRANSITION AT THE	1.0	0.245	0.721	3.7e-32
TAIR|locus:2043899	401	SSI2 "AT2G43710" [Arabidopsis	0.979	0.234	0.583	1.9e-26
TAIR|locus:2076969	396	AT3G02630 [Arabidopsis thalian	0.968	0.234	0.574	2e-24
TAIR|locus:2181427	401	AT5G16230 [Arabidopsis thalian	1.0	0.239	0.567	2.6e-24
TAIR|locus:2181437	394	AT5G16240 [Arabidopsis thalian	0.968	0.236	0.542	2.9e-23
UNIPROTKB|E3PZS2	376	SAD2 "Acyl-[acyl-carrier-prote	0.979	0.25	0.474	6.1e-21

TAIR|locus:2029142 FTM1 "FLORAL TRANSITION AT THE MERISTEM1" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 70/97 (72%), Positives = 81/97 (83%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
             M DG DP LF HF+AVAQ+L VYTA DYADILEFL+G+W  EKLEGLTGEG+RAQEFVCG
Sbjct:   295 MTDGRDPMLFEHFSAVAQRLEVYTADDYADILEFLVGRWRLEKLEGLTGEGQRAQEFVCG 354

Query:    61 LAPRIRRLQGLADQRAKKLKPPR-VKFSWIFNRKLSL 96
             LA RIRRLQ  AD+RAKKLK    V FSWIF++++S+
Sbjct:   355 LAQRIRRLQERADERAKKLKKTHEVCFSWIFDKQISV 391

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2043899 SSI2 "AT2G43710" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 56/96 (58%), Positives = 75/96 (78%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
             MYDG +  LF +F++VAQ+LGVYTA DYADILEFL+G+W  + L GL+GEG +AQ+++CG
Sbjct:   308 MYDGRNDNLFDNFSSVAQRLGVYTAKDYADILEFLVGRWKIQDLTGLSGEGNKAQDYLCG 367

Query:    61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
             LAPRI+RL   A  RAKK   P++ FSWI +R++ L
Sbjct:   368 LAPRIKRLDERAQARAKK--GPKIPFSWIHDREVQL 401

GO:0004768 "stearoyl-CoA 9-desaturase activity" evidence=IDA;IMP

GO:0006631 "fatty acid metabolic process" evidence=IEA;IDA;IMP

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=IMP

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;TAS

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=TAS

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=TAS

GO:0051607 "defense response to virus" evidence=IEP;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0002213 "defense response to insect" evidence=IMP

GO:0009536 "plastid" evidence=TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2076969 AT3G02630 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/94 (57%), Positives = 66/94 (70%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
             MYDG D  LF HF+ VAQ+LGVYTA DYADILEFL+ +W  E L  L+ EG RAQ+FVCG
Sbjct:   302 MYDGQDDNLFEHFSTVAQRLGVYTAKDYADILEFLVERWNVETLTDLSSEGHRAQDFVCG 361

Query:    61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKL 94
             L  RIR+++  A  RAK+     + FSWIF R +
Sbjct:   362 LPARIRKIEERAQGRAKEAAK-NIPFSWIFGRNI 394

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2181427 AT5G16230 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 55/97 (56%), Positives = 70/97 (72%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLE-GLTGEGRRAQEFVC 59
             M+DG D  LF H+AAVAQ++GVYTA DYA ILEFL+ +W  E L  GL+GEGRRAQE++C
Sbjct:   305 MHDGRDNDLFDHYAAVAQRIGVYTAADYAGILEFLLRRWKVESLGLGLSGEGRRAQEYLC 364

Query:    60 GLAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
              L  RI+RL+  A+ R K +  P V FSW+F R + L
Sbjct:   365 TLPQRIKRLEERANDRVKLVSKPSVSFSWVFGRDVKL 401

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2181437 AT5G16240 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 51/94 (54%), Positives = 67/94 (71%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
             MYDG D  LF HF++VAQ+LGVYTA DYADIL+ L+ +W  EKL  L+ EG RAQ+++CG
Sbjct:   300 MYDGRDDNLFDHFSSVAQRLGVYTAKDYADILQHLVERWNVEKLSDLSSEGNRAQDYLCG 359

Query:    61 LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKL 94
             L  RIR+L+  A  R K+     + FSWIF R++
Sbjct:   360 LPARIRKLEERAQGRTKEAAK-NIPFSWIFGREV 392

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|E3PZS2 SAD2 "Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic" [Ophrys sphegodes (taxid:145953)]

 Score = 247 (92.0 bits), Expect = 6.1e-21, P = 6.1e-21
 Identities = 47/99 (47%), Positives = 69/99 (69%)

Query:     1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWG-SEKLEGLTGEGRRAQEFVC 59
             M+DG DPRLF HF+AV Q++GVYT  DY ++L+F + +W  S  ++ L+ EGR+AQE+VC
Sbjct:   276 MFDGRDPRLFTHFSAVTQKIGVYTVRDYGEMLDFFLKEWEISAVVDDLSPEGRQAQEYVC 335

Query:    60 GLAPRIRRLQGLADQRAKKL----KPPRVKFSWIFNRKL 94
             GL   + ++   AD R KKL    +P  + FSWIFN+++
Sbjct:   336 GLPEVMGKMAERADDRRKKLVNVGEPRYIPFSWIFNKQV 374


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.142   0.443    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.47    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.35u 0.16s 10.51t   Elapsed:  00:00:00
  Total cpu time:  10.35u 0.16s 10.51t   Elapsed:  00:00:00
  Start:  Fri May 10 23:16:11 2013   End:  Fri May 10 23:16:11 2013

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=IDA

GO:0045300 "acyl-[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84VY3	STAD6_ARATH	1, ., 1, 4, ., 1, 9, ., 2	0.7216	1.0	0.2455	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
PLN00179	390	PLN00179, PLN00179, acyl- [acyl-carrier protein] d	6e-57
pfam03405	330	pfam03405, FA_desaturase_2, Fatty acid desaturase	8e-48
cd01050	297	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferr	2e-24

>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase

 Score =  179 bits (456), Expect = 6e-57
 Identities = 64/96 (66%), Positives = 77/96 (80%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILE L+ +W  E+L GL+GEGRRAQ++VCG
Sbjct: 295 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCG 354

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAKK KPP + FSWIF+R++ L
Sbjct: 355 LPPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL 390

Length = 390

>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase

 Score =  154 bits (391), Expect = 8e-48
 Identities = 68/94 (72%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG DP LF HF+AVAQ+LGVYTA DYADILEFL+G+W  EKL GL+GEGRRAQ++VCG
Sbjct: 238 MYDGRDPNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWRVEKLTGLSGEGRRAQDYVCG 297

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKL 94
           LAPRIRRL+  A +RAK+  PP V FSWIF+RK+
Sbjct: 298 LAPRIRRLEERAQERAKRAAPP-VPFSWIFDRKV 330

Length = 330

>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain

 Score = 92.7 bits (231), Expect = 2e-24
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 4   GHD-PRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLA 62
           GH    LF  FAAVA + GVYTA DY DILE L+ +W  E+L GL+GEGR+AQE++C L 
Sbjct: 228 GHLMYPLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALP 287

Query: 63  PRIRRL 68
            R+RRL
Sbjct: 288 ARLRRL 293

Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD. Length = 297

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PLN00179	390	acyl- [acyl-carrier protein] desaturase	100.0
PF03405	330	FA_desaturase_2: Fatty acid desaturase; InterPro:	100.0
cd01050	297	Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like	99.92
TIGR01392	351	homoserO_Ac_trn homoserine O-acetyltransferase. Th	89.4
PRK06765	389	homoserine O-acetyltransferase; Provisional	85.91
PRK06489	360	hypothetical protein; Provisional	85.58
PRK00175	379	metX homoserine O-acetyltransferase; Provisional	83.82

>PLN00179 acyl- [acyl-carrier protein] desaturase

Probab=100.00  E-value=3.7e-44  Score=292.97  Aligned_cols=96  Identities=67%  Similarity=1.189  Sum_probs=93.4

Q ss_pred             CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389            1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK   80 (96)
Q Consensus         1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~   80 (96)
                      |+||+|++||+|||+||||+||||+.||+|||+|||++|+|++|+|||+||+|||||||+||+|||||+||+++|+|+.+
T Consensus       295 m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era~~~~~~~~  374 (390)
T PLN00179        295 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERAQDRAKKAK  374 (390)
T ss_pred             CCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHHhhHHhccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCcccceeeeCcccCC
Q 034389           81 PPRVKFSWIFNRKLSL   96 (96)
Q Consensus        81 ~~~~~FsWI~~r~v~~   96 (96)
                      +..++|||||+|+|.|
T Consensus       375 ~~~~~fsWi~~r~v~~  390 (390)
T PLN00179        375 PPSIPFSWIFDREVRL  390 (390)
T ss_pred             CCCCceeeecCCccCC
Confidence            6789999999999976

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids

Probab=100.00  E-value=2.4e-38  Score=254.16  Aligned_cols=93  Identities=52%  Similarity=0.963  Sum_probs=77.8

Q ss_pred             CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389            1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK   80 (96)
Q Consensus         1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~   80 (96)
                      |.||+|++||+|||+++|++||||+.||+|||++||++|+|++++|||+||++||||||+||+|++|++||++.++++..
T Consensus       238 m~dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~  317 (330)
T PF03405_consen  238 MPDGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERADRRAARMA  317 (330)
T ss_dssp             ---SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTSTTTSSS-
T ss_pred             cccCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999998877765


Q ss_pred             CCcccceeeeCccc
Q 034389           81 PPRVKFSWIFNRKL   94 (96)
Q Consensus        81 ~~~~~FsWI~~r~v   94 (96)
                       ..++|||||||+|
T Consensus       318 -~~~~fswif~r~v  330 (330)
T PF03405_consen  318 -KPVPFSWIFNREV  330 (330)
T ss_dssp             --EEE-GGGTT-EE
T ss_pred             -CCCceeeecCCCC
Confidence             5789999999997

There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.

>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain

Probab=99.92  E-value=2.8e-25  Score=176.24  Aligned_cols=65  Identities=58%  Similarity=0.991  Sum_probs=63.7

Q ss_pred             hhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHH
Q 034389            8 RLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLA   72 (96)
Q Consensus         8 ~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa   72 (96)
                      ++|+|||+++||+||||+.||++||++|+++|+|++|+|||+||+|||||||+||+||+|++||+
T Consensus       233 ~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~  297 (297)
T cd01050         233 PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA  297 (297)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            78999999999999999999999999999999999999999999999999999999999999874

Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1

>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase

Probab=89.40  E-value=0.41  Score=37.02  Aligned_cols=47  Identities=23%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHH
Q 034389           22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      .||..|+++.+..|++..++++   |.|.|=-|.=|+.|.+.-|.|+++|
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~l  155 (351)
T TIGR01392       106 LITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAI  155 (351)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence            5899999999999999999997   5699999999999999999999873

This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.

>PRK06765 homoserine O-acetyltransferase; Provisional

Probab=85.91  E-value=0.96  Score=36.86  Aligned_cols=48  Identities=27%  Similarity=0.364  Sum_probs=43.8

Q ss_pred             hccchhhHHHHHHHHhhccccccc---cCCChHHHHHHHHHhhccHHHHHH
Q 034389           21 GVYTAHDYADILEFLIGQWGSEKL---EGLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        21 GVYTa~DY~dIle~Lv~~W~ve~l---~gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      -+||..|+++.+..|++..+|+++   -|-|=-|.-|+++.+.-|+|+++|
T Consensus       139 P~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~l  189 (389)
T PRK06765        139 PVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERM  189 (389)
T ss_pred             CcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE
Confidence            369999999999999999999975   499999999999999999999884

>PRK06489 hypothetical protein; Provisional

Probab=85.58  E-value=0.95  Score=35.20  Aligned_cols=48  Identities=15%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             ccchhhHHH-HHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHHH
Q 034389           22 VYTAHDYAD-ILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRLQ   69 (96)
Q Consensus        22 VYTa~DY~d-Ile~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrla   69 (96)
                      .||..|+++ +++.|.+..++++   |-|.|=-|.=|++|...-|+|+++|-
T Consensus       132 ~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV  183 (360)
T PRK06489        132 RYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM  183 (360)
T ss_pred             cccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence            589999985 5566668788875   47999999999999999999988854

>PRK00175 metX homoserine O-acetyltransferase; Provisional

Probab=83.82  E-value=1.2  Score=35.26  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHH
Q 034389           22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRR   67 (96)
Q Consensus        22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirr   67 (96)
                      .||..||++.+..|++..++++   |.|.|=-|.-|+.|....|.|+++
T Consensus       126 ~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~  174 (379)
T PRK00175        126 VITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRS  174 (379)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhE
Confidence            6999999999999999999987   459999999999999999998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1oq4_A	363	The Crystal Structure Of The Complex Between Stearo		1e-29
2j2f_A	363	The T199d Mutant Of Stearoyl Acyl Carrier Protein D		1e-29
1afr_A	345	Stearoyl-Acyl Carrier Protein Desaturase From Casto		1e-29
2uw1_A	338	Ivy Desaturase Structure Length = 338		9e-29
2uw1_B	338	Ivy Desaturase Structure Length = 338		2e-28

>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Azide. Length = 363

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W  +KL GL+ EG++AQ++VC 
Sbjct: 270 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 329
Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK+   P + FSWIF+R++ L
Sbjct: 330 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 363

>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) Length = 363

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W  +KL GL+ EG++AQ++VC 
Sbjct: 270 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 329
Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK+   P + FSWIF+R++ L
Sbjct: 330 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 363

>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds Length = 345

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)
Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W  +KL GL+ EG++AQ++VC 
Sbjct: 252 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 311
Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK+   P + FSWIF+R++ L
Sbjct: 312 LPPRIRRLEERAQGRAKEA--PTMPFSWIFDRQVKL 345

>pdb|2UW1|A Chain A, Ivy Desaturase Structure Length = 338

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 2/96 (2%)
Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF AVAQ+LGVY+A DY DILEFL+ +W  E+L GL+ EGR+AQE+VC 
Sbjct: 245 MYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCE 304
Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L P+IRRL+  A  RAK  + P + FSWIF+R++ L
Sbjct: 305 LGPKIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 338

>pdb|2UW1|B Chain B, Ivy Desaturase Structure Length = 338

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 2/96 (2%)
Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF AVAQ++GVY+A DY DILEFL+ +W  E+L GL+ EGR+AQE+VC 
Sbjct: 245 MYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCE 304
Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L P+IRRL+  A  RAK  + P + FSWIF+R++ L
Sbjct: 305 LGPKIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 338

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
2uw1_A	338	Desaturase, plastid delta4 multifunctional acyl-AC	8e-35
1za0_A	275	Possible acyl-[acyl-carrier protein] desaturase D	4e-15

>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Length = 338

 Score =  120 bits (302), Expect = 8e-35
 Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF AVAQ+LGVY+A DY DILEFL+ +W  E+L GL+ EGR+AQE+VC 
Sbjct: 245 MYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCE 304

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L P+IRRL+  A  RAK  + P + FSWIF+R++ L
Sbjct: 305 LGPKIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 338

>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Length = 275

 Score = 67.0 bits (163), Expect = 4e-15
 Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 6/58 (10%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFV 58
              G D   +          G++       ++   I  W      GL GE    Q   
Sbjct: 223 DVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAW------GLAGEPSLKQFVT 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
2uw1_A	338	Desaturase, plastid delta4 multifunctional acyl-AC	100.0
1za0_A	275	Possible acyl-[acyl-carrier protein] desaturase D	99.39
2wj6_A	276	1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid	84.13
1ehy_A	294	Protein (soluble epoxide hydrolase); alpha/beta hy	82.9
1iup_A	282	META-cleavage product hydrolase; aromatic compound	81.22
3i1i_A	377	Homoserine O-acetyltransferase; structural genomic	80.97

>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A

Probab=100.00  E-value=1.1e-41  Score=272.93  Aligned_cols=94  Identities=60%  Similarity=1.079  Sum_probs=91.5

Q ss_pred             CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389            1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK   80 (96)
Q Consensus         1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~   80 (96)
                      |+||+|+++|+|||+||||+||||+.||+|||+|||++|+|++++|||+||+|||||||+||+|++|++||++.|+||.+
T Consensus       245 m~dg~~~~~f~~~s~~a~r~GvYt~~dy~dil~~l~~~W~i~~~~gl~~eg~~ard~l~~l~~r~~r~~er~~~~~~~~~  324 (338)
T 2uw1_A          245 MYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAP  324 (338)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHTTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CcCCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCcccccCCCHHHHHHHHHHHcchHHHHHHHHHhhhhhhcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCcccceeeeCcccCC
Q 034389           81 PPRVKFSWIFNRKLSL   96 (96)
Q Consensus        81 ~~~~~FsWI~~r~v~~   96 (96)
                        +++|||||+|+|.|
T Consensus       325 --~~~f~wi~~~~~~~  338 (338)
T 2uw1_A          325 --TMPFSWIFDRQVKL  338 (338)
T ss_dssp             --EEEEGGGTTEEEEC
T ss_pred             --CCCeeEeecCcccC
Confidence              49999999999975

>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2

Probab=99.39  E-value=1.3e-13  Score=107.78  Aligned_cols=42  Identities=12%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             hhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCCh
Q 034389            8 RLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTG   49 (96)
Q Consensus         8 ~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~   49 (96)
                      ..|+|||++|||+||||+.||++||++||++|+|++++|||.
T Consensus       230 ~~~~~~~~~~~~~GvY~~~dy~~vl~~l~~~W~v~~~~~L~~  271 (275)
T 1za0_A          230 EAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQ  271 (275)
T ss_dssp             TTCHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTCTTCGGGGG
T ss_pred             chhhHHHHHHHHHcCCCHHHHHHHHHHHHHHcCccccccHHH
Confidence            679999999999999999999999999999999999999984

>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*

Probab=84.13  E-value=0.31  Score=34.30  Aligned_cols=48  Identities=15%  Similarity=0.064  Sum_probs=42.4

Q ss_pred             hccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhc-cHHHHHH
Q 034389           21 GVYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGL-APRIRRL   68 (96)
Q Consensus        21 GVYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~L-p~Rirrl   68 (96)
                      +-||..+|++-+..|++..++++.  -|-|=-|.=|+.|...- |+|+++|
T Consensus        72 ~~~~~~~~a~dl~~ll~~l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~l  122 (276)
T 2wj6_A           72 PDFGYQEQVKDALEILDQLGVETFLPVSHSHGGWVLVELLEQAGPERAPRG  122 (276)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHhCHHhhceE
Confidence            459999999999999999999865  49999999999999998 9988764

>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11

Probab=82.90  E-value=0.36  Score=33.79  Aligned_cols=47  Identities=21%  Similarity=0.214  Sum_probs=41.6

Q ss_pred             ccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHH
Q 034389           22 VYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        22 VYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      -||..+|++-+..|++.-++++.  -|-|=-|.=|+.|....|+|+++|
T Consensus        79 ~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~l  127 (294)
T 1ehy_A           79 KYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKA  127 (294)
T ss_dssp             GGCHHHHHHHHHHHHHHTTCCCEEEEEETHHHHHHHHHHHHTGGGEEEE
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCEEEEEeChhHHHHHHHHHhChhheeEE
Confidence            59999999999999999998865  499999999999999999887764

>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A

Probab=81.22  E-value=0.44  Score=33.20  Aligned_cols=47  Identities=19%  Similarity=0.200  Sum_probs=41.2

Q ss_pred             ccchhhHHHHHHHHhhccccccc--cCCChHHHHHHHHHhhccHHHHHH
Q 034389           22 VYTAHDYADILEFLIGQWGSEKL--EGLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        22 VYTa~DY~dIle~Lv~~W~ve~l--~gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      -||..+|++-+..+++..+++++  -|-|=-|.=|+.|....|+|+++|
T Consensus        75 ~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~l  123 (282)
T 1iup_A           75 NYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRM  123 (282)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCSEEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCceEEEEECHhHHHHHHHHHHChHHHHHH
Confidence            58999999999999999998875  499999999999999999887653

>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}

Probab=80.97  E-value=0.45  Score=33.16  Aligned_cols=47  Identities=26%  Similarity=0.329  Sum_probs=42.3

Q ss_pred             ccchhhHHHHHHHHhhcccccc---ccCCChHHHHHHHHHhhccHHHHHH
Q 034389           22 VYTAHDYADILEFLIGQWGSEK---LEGLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        22 VYTa~DY~dIle~Lv~~W~ve~---l~gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      .||..|+++.+..+++.-++++   |-|-|--|-=|..|....|+|+++|
T Consensus       126 ~~~~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~l  175 (377)
T 3i1i_A          126 VFTFLDVARMQCELIKDMGIARLHAVMGPSAGGMIAQQWAVHYPHMVERM  175 (377)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHh
Confidence            7899999999999999999987   4599999999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1afra_	345	a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protei	2e-39
d1za0a1	267	a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier pro	1e-11

>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 345

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 2/96 (2%)

Query: 1   MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCG 60
           MYDG D  LF HF+AVAQ+LGVYTA DYADILEFL+G+W  +KL GL+ EG++AQ++VC 
Sbjct: 252 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCR 311

Query: 61  LAPRIRRLQGLADQRAKKLKPPRVKFSWIFNRKLSL 96
           L PRIRRL+  A  RAK  + P + FSWIF+R++ L
Sbjct: 312 LPPRIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 345

>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Possible acyl-[acyl-carrier protein] desaturase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 4   GHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLT 48
           G D   +          G++       ++   I  WG      L 
Sbjct: 219 GADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLK 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1afra_	345	delta 9-stearoyl-acyl carrier protein desaturase {	100.0
d1za0a1	267	Possible acyl-[acyl-carrier protein] desaturase {M	99.13
d1b6ga_	310	Haloalkane dehalogenase {Xanthobacter autotrophicu	83.66
d1q0ra_	297	Aclacinomycin methylesterase RdmC {Streptomyces pu	80.6

>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=2.4e-41  Score=269.98  Aligned_cols=94  Identities=62%  Similarity=1.120  Sum_probs=90.7

Q ss_pred             CCCCCCchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCChHHHHHHHHHhhccHHHHHHHHHHHHHHhhcC
Q 034389            1 MYDGHDPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTGEGRRAQEFVCGLAPRIRRLQGLADQRAKKLK   80 (96)
Q Consensus         1 M~DG~~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~eg~kAqdyvc~Lp~RirrlaERa~~r~~~~~   80 (96)
                      |.||+++++|+|||++|||+||||+.||+|||++||++|+|++++|||+||+|||||||+||+||+|++||+++|+|+.+
T Consensus       252 m~dg~~~~~F~~~s~~~~r~GiY~~~d~~dil~~lv~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~ra~~~~  331 (345)
T d1afra_         252 MYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAP  331 (345)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCC
T ss_pred             CCCCCcchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhhccCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999988655


Q ss_pred             CCcccceeeeCcccCC
Q 034389           81 PPRVKFSWIFNRKLSL   96 (96)
Q Consensus        81 ~~~~~FsWI~~r~v~~   96 (96)
                        .++|||||||+|.|
T Consensus       332 --~~~fswi~~r~v~~  345 (345)
T d1afra_         332 --TMPFSWIFDRQVKL  345 (345)
T ss_dssp             --EEEEGGGTTEEEEC
T ss_pred             --CCceeeeccccccC
Confidence              68999999999976

>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Possible acyl-[acyl-carrier protein] desaturase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=1.1e-11  Score=94.79  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=40.9

Q ss_pred             CchhhhHHHHHHHHhhccchhhHHHHHHHHhhccccccccCCCh
Q 034389            6 DPRLFAHFAAVAQQLGVYTAHDYADILEFLIGQWGSEKLEGLTG   49 (96)
Q Consensus         6 ~~~lF~~FS~vAQR~GVYTa~DY~dIle~Lv~~W~ve~l~gLs~   49 (96)
                      +-.-|+|||+++||.||||+.||.+|+++||++|+|++++||+.
T Consensus       221 ~m~df~~~a~~~ar~GiY~~~~~~~il~~ll~~W~v~~~~~L~~  264 (267)
T d1za0a1         221 DIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQ  264 (267)
T ss_dssp             TSTTCHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTCTTCGGGGG
T ss_pred             CCCcHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCccchhh
Confidence            33459999999999999999999999999999999999999985

>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Haloalkane dehalogenase
domain: Haloalkane dehalogenase
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=83.66  E-value=0.11  Score=34.21  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=44.0

Q ss_pred             hccchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389           21 GVYTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        21 GVYTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      ..||..++++.++.+++..+++++.  |-|--|-=|..|...-|+|+++|
T Consensus        95 ~~~~~~~~~~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~l  144 (310)
T d1b6ga_          95 EDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL  144 (310)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTCCSEEEEECTHHHHHHTTSGGGSGGGEEEE
T ss_pred             ccccccccccchhhhhhhccccccccccceecccccccchhhhccccceE
Confidence            4689999999999999999999876  99999999999999999998775

>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Aclacinomycin methylesterase RdmC
domain: Aclacinomycin methylesterase RdmC
species: Streptomyces purpurascens [TaxId: 1924]

Probab=80.60  E-value=0.23  Score=31.94  Aligned_cols=46  Identities=20%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             cchhhHHHHHHHHhhcccccccc--CCChHHHHHHHHHhhccHHHHHH
Q 034389           23 YTAHDYADILEFLIGQWGSEKLE--GLTGEGRRAQEFVCGLAPRIRRL   68 (96)
Q Consensus        23 YTa~DY~dIle~Lv~~W~ve~l~--gLs~eg~kAqdyvc~Lp~Rirrl   68 (96)
                      ||..|+++.++.|++.-++++..  |-|--|.-|..|....|+|+.+|
T Consensus        74 ~~~~~~~~d~~~ll~~l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~l  121 (297)
T d1q0ra_          74 YGFGELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALDHHDRLSSL  121 (297)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEE
T ss_pred             cccchhhhhhccccccccccceeeccccccchhhhhhhcccccceeee
Confidence            89999999999999988888654  99999999999999989887763