Citrus Sinensis ID: 034446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccEcc
Coil and Loop (DISEMBL)
mvletvlssphrrsssfkrqftkdefgswsTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAatscsgliGTEKALCHLEQAKASVAKGKLKFL
Flexible Loop (DISEMBL)
mvletvlssphrrsssfkrqftkdefgsWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKasvakgklkfl
Low Complexity Region (SEG)
MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFlltalvllgllCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL
Disordered region (IsUnstruct)
************************EFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQ*************
Disordered Region (DISOPRED)
*****************************STLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALC***********GKLKFL
Disordered Region (DISEMBL)
******************RQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL
Disordered Region (DISPRO)
*************************FGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKASVAKGKL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTLGAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
255543409	120	conserved hypothetical protein [Ricinus	0.989	0.775	0.744	2e-33
224073100	94	predicted protein [Populus trichocarpa]	1.0	1.0	0.712	1e-32
224103355	94	predicted protein [Populus trichocarpa]	1.0	1.0	0.702	7e-32
449436209	93	PREDICTED: uncharacterized protein LOC10	0.989	1.0	0.734	2e-31
224105589	94	predicted protein [Populus trichocarpa]	1.0	1.0	0.691	3e-31
224057186	94	predicted protein [Populus trichocarpa]	1.0	1.0	0.691	6e-31
356496508	94	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.670	7e-30
388507984	94	unknown [Lotus japonicus]	1.0	1.0	0.659	2e-29
449439753	95	PREDICTED: uncharacterized protein LOC10	1.0	0.989	0.726	1e-26
224057182	94	predicted protein [Populus trichocarpa]	1.0	1.0	0.691	3e-25

>gi|255543409|ref|XP_002512767.1| conserved hypothetical protein [Ricinus communis] gi|223547778|gb|EEF49270.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 1   MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
           MVL+ +LSSPHRRS SF++QF +DE GSWSTL +RHRFLLTALVLL  LCTIYLYFAVTL
Sbjct: 28  MVLDNILSSPHRRSPSFRKQFPRDELGSWSTLVQRHRFLLTALVLLAFLCTIYLYFAVTL 87

Query: 61  GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
           GA  SCSGL G +KALC+LE AK+SV KGK+KF 
Sbjct: 88  GATGSCSGLTGKQKALCNLELAKSSV-KGKMKFF 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073100|ref|XP_002303971.1| predicted protein [Populus trichocarpa] gi|222841403|gb|EEE78950.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 79/94 (84%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++++SPH RS SF++QF +D+ GSWSTL +RHRFLLTALVLLG LCTIYLYFAVTL
Sbjct: 1  MVLDSMITSPHLRSPSFRKQFPRDDLGSWSTLLQRHRFLLTALVLLGFLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA  SCSG  GT+KALCH+E AK SV  GKLKF 
Sbjct: 61 GATESCSGFTGTKKALCHVELAKDSVGHGKLKFF 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103355|ref|XP_002334063.1| predicted protein [Populus trichocarpa] gi|222869637|gb|EEF06768.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 76/94 (80%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++++SPHRRS SF++QF +DE GSWSTL +RHRFLLTA  LL  LCTIYLYFAVTL
Sbjct: 1  MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA  SCSGL GT+K LC LE AK SV  GKLKF 
Sbjct: 61 GATESCSGLTGTKKTLCRLELAKDSVGNGKLKFF 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436209|ref|XP_004135886.1| PREDICTED: uncharacterized protein LOC101216292 [Cucumis sativus] gi|449527574|ref|XP_004170785.1| PREDICTED: uncharacterized LOC101216292 [Cucumis sativus]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL++VLSSPHRRS SF++ F  +E GSWSTL +RHRFLLTALVLL  LCTIYLYFAVTL
Sbjct: 1  MVLDSVLSSPHRRSPSFRKSF-PNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTL 59

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          G+++SC GL GT+KA CHLE AK S+AKGKLK L
Sbjct: 60 GSSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105589|ref|XP_002333792.1| predicted protein [Populus trichocarpa] gi|222838513|gb|EEE76878.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 75/94 (79%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++++SPHRRS SF++ F +DE GSWSTL +RHRFLLTA  LL  LCTIYLYFAVTL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLQRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA  SCSGL GT+K LC LE AK SV  GKLKF 
Sbjct: 61 GATESCSGLTGTKKTLCRLELAKDSVGNGKLKFF 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057186|ref|XP_002299162.1| predicted protein [Populus trichocarpa] gi|222846420|gb|EEE83967.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 74/94 (78%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++++SPHRRS SF++ F +DE GSWSTL  RHRFLLTA  LL  LCTIYLYFAVTL
Sbjct: 1  MVLDSMITSPHRRSPSFRKPFPRDELGSWSTLLRRHRFLLTAFALLAFLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA  SCSGL GT+K LC LE AK SV  GKLKF 
Sbjct: 61 GATESCSGLTGTKKTLCRLELAKDSVGNGKLKFF 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496508|ref|XP_003517109.1| PREDICTED: uncharacterized protein LOC100782168 [Glycine max]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 76/94 (80%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MV++++L+SP   S SF+RQF KDE GSWSTL +RHRFLL+ LVL+ LLCTIYLYFAVTL
Sbjct: 1  MVIDSILTSPRLNSPSFRRQFKKDELGSWSTLFQRHRFLLSTLVLITLLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA+ +CSGL G +K  CH+E  K SVAKGKLK L
Sbjct: 61 GASGTCSGLTGAQKTSCHMELVKDSVAKGKLKIL 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507984|gb|AFK42058.1| unknown [Lotus japonicus]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/94 (65%), Positives = 75/94 (79%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+T+LSSP  RS SFKRQF K E G+WSTL +RHRFLL+ LVLL +LC +YLYFAVT+
Sbjct: 1  MVLDTILSSPRLRSPSFKRQFAKVELGNWSTLVQRHRFLLSTLVLLTILCFVYLYFAVTI 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          G+  SCSGL G +KA CH+E  K S+AKGKL+ L
Sbjct: 61 GSNGSCSGLTGAQKASCHMELVKDSIAKGKLRML 94

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439753|ref|XP_004137650.1| PREDICTED: uncharacterized protein LOC101216392 [Cucumis sativus] gi|449501599|ref|XP_004161412.1| PREDICTED: uncharacterized protein LOC101227506 [Cucumis sativus]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++L+SPHRRS SF++QF  +E GSWSTL +RHRFLLTAL LL  LCTIYLYFA+TL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GA-ATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA A+SCSGL GT++ LC LE AKAS+AKGKLKFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057182|ref|XP_002299160.1| predicted protein [Populus trichocarpa] gi|222846418|gb|EEE83965.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 76/94 (80%)

Query: 1  MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFLLTALVLLGLLCTIYLYFAVTL 60
          MVL+++++SPHRRS SF++QF +DE GSWSTL +RHRFLLTAL LL  LCTIYLYFAVTL
Sbjct: 1  MVLDSMITSPHRRSPSFRKQFPRDELGSWSTLLQRHRFLLTALALLAFLCTIYLYFAVTL 60

Query: 61 GAATSCSGLIGTEKALCHLEQAKASVAKGKLKFL 94
          GA  SCSGL GT+K LC LE A+ S   GKLKF 
Sbjct: 61 GAIESCSGLTGTKKTLCRLELAEDSGGNGKLKFF 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2200482	92	AT1G16170 "AT1G16170" [Arabido	0.957	0.978	0.510	9.2e-20
TAIR|locus:2019888	93	AT1G79660 "AT1G79660" [Arabido	0.968	0.978	0.489	8.3e-19

TAIR|locus:2200482 AT1G16170 "AT1G16170" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 48/94 (51%), Positives = 64/94 (68%)

Query:     1 MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFXXXXXXXXXXXCTIYLYFAVTL 60
             MVL+ ++SSP RR    K+Q+  DE GSWSTL +RH++           CT+YLYFAVTL
Sbjct:     1 MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 58

Query:    61 GAA-TSCSGLIGTEKALCHLEQAKASVAKGKLKF 93
             GA  +SC GL G +KA+C L+  +A ++KGKLKF
Sbjct:    59 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019888 AT1G79660 "AT1G79660" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/94 (48%), Positives = 62/94 (65%)

Query:     1 MVLETVLSSPHRRSSSFKRQFTKDEFGSWSTLAERHRFXXXXXXXXXXXCTIYLYFAVTL 60
             MVL+ ++SSP RR  + K+Q+  D+ GS ST+ +RHRF           CTIY+YFAVTL
Sbjct:     1 MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 58

Query:    61 GAA-TSCSGLIGTEKALCHLEQAKASVAKGKLKF 93
             GA    CSG+ G +KA+C +E  +AS + GKLKF
Sbjct:    59 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.131   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        83   0.00091  102 3  11 22  0.37    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  99 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.04u 0.27s 7.31t   Elapsed:  00:00:00
  Total cpu time:  7.04u 0.27s 7.31t   Elapsed:  00:00:00
  Start:  Thu May  9 15:23:41 2013   End:  Thu May  9 15:23:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0718 hypothetical protein (94 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00