Citrus Sinensis ID: 034480

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHcccHHHHccccccHHHHHccccccEEEEEcccccEEEEEEEcccccccccEEEEEEEEcccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEEccccccEEEEEEEcccccccccEEEEEEEEcccccHHHHHHcc
Coil and Loop (DISEMBL)
mvqsedkatkekgvpdFWFIAMESHHELRQNIVRHDQGALKyltdikwcrindsegfkleftfgpnpyfknsvlektYRMIDETDIVLEEAIG
Flexible Loop (DISEMBL)
mvqsedkatkekgvpdFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGfkleftfgpnpyfknsvlektyrmIDETDIVLEEAIG
Low Complexity Region (SEG)
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG
Disordered region (IsUnstruct)
*************VPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVL*****
Disordered Region (DISOPRED)
************G**DFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLE****
Disordered Region (DISEMBL)
**********EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG
Disordered Region (DISPRO)
**********EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
O59797	393	Putative nucleosome assem	yes	no	0.774	0.183	0.438	7e-12
Q99457	506	Nucleosome assembly prote	yes	no	0.720	0.132	0.405	1e-09
Q5R675	510	Nucleosome assembly prote	no	no	0.795	0.145	0.381	1e-09
P55209	391	Nucleosome assembly prote	no	no	0.795	0.189	0.434	1e-09
A6H767	391	Nucleosome assembly prote	yes	no	0.795	0.189	0.434	1e-09
P28656	391	Nucleosome assembly prote	yes	no	0.795	0.189	0.434	2e-09
Q5R4D4	391	Nucleosome assembly prote	no	no	0.795	0.189	0.434	2e-09
Q99733	375	Nucleosome assembly prote	no	no	0.795	0.197	0.434	2e-09
P51860	460	Nucleosome assembly prote	no	no	0.741	0.15	0.450	3e-09
Q28EB4	393	Nucleosome assembly prote	no	no	0.795	0.188	0.407	5e-09

>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
           KG+P+FW  AM++   L + I   D+GAL +L DI+   + +  GFKLEF F  NP+F N
Sbjct: 162 KGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYM-EKPGFKLEFEFAENPFFTN 220

Query: 72  SVLEKTYRMIDET 84
            +L KTY  ++E+
Sbjct: 221 KILTKTYYYMEES 233

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 OS=Homo sapiens GN=NAP1L3 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDI--KWCRINDSEGFKLEFTFGPNPYF 69
           KG+PD+W I +++  +L   I ++D+  LK+L+D+  K+ +      +  EF F PNPYF
Sbjct: 309 KGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYF 368

Query: 70  KNSVLEKTY 78
           +N VL KTY
Sbjct: 369 RNEVLVKTY 377

Homo sapiens (taxid: 9606)

>sp|Q5R675|NP1L3_PONAB Nucleosome assembly protein 1-like 3 OS=Pongo abelii GN=NAP1L3 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDI--KWCRINDSEGFKLEFTFGPNPYF 69
           KG+PD+W I +++  +L   I ++D+  LK+L+D+  K+ +      +  EF F PNPYF
Sbjct: 313 KGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYF 372

Query: 70  KNSVLEKTYRMIDETD 85
           +N VL KTY +  + D
Sbjct: 373 RNEVLVKTYIIKSKPD 388

Pongo abelii (taxid: 9601)

>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYF 224

Query: 70  KNSVLEKTYRMIDETD 85
            N VL KTYRM  E D
Sbjct: 225 TNEVLTKTYRMRSEPD 240

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYF 224

Query: 70  KNSVLEKTYRMIDETD 85
            N VL KTYRM  E D
Sbjct: 225 TNEVLTKTYRMRSEPD 240

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Bos taurus (taxid: 9913)

>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYF 224

Query: 70  KNSVLEKTYRMIDETD 85
            N VL KTYRM  E D
Sbjct: 225 TNEVLTKTYRMRSEPD 240

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSGAGQPMSFVLEFHFEPNEYF 224

Query: 70  KNSVLEKTYRMIDETD 85
            N VL KTYRM  E D
Sbjct: 225 TNEVLTKTYRMRSEPD 240

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Pongo abelii (taxid: 9601)

>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FWF    +   L + +  +D+  LK+L DIK  +        F LEF F PN YF
Sbjct: 157 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYF 216

Query: 70  KNSVLEKTYRMIDETD 85
            NSVL KTY+M  E D
Sbjct: 217 TNSVLTKTYKMKSEPD 232

Homo sapiens (taxid: 9606)

>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 OS=Mus musculus GN=Nap1l2 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE--GFKLEFTFGPNPYF 69
           KG+PDFW   +++   L   I ++D+  LK LTDIK    +  E   F LEF F PN YF
Sbjct: 238 KGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIKVKLSDPGEPLSFTLEFHFKPNEYF 297

Query: 70  KNSVLEKTYRM 80
           KN +L KTY +
Sbjct: 298 KNELLTKTYVL 308

Acidic protein which may be involved in interactions with other proteins or DNA.

Mus musculus (taxid: 10090)

>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN +F
Sbjct: 166 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEAGQPMSFTLEFHFEPNDFF 225

Query: 70  KNSVLEKTYRMIDETD 85
            N VL KTY+M  E D
Sbjct: 226 TNEVLTKTYKMRSEPD 241

Acts as a chaperone for the linker histone to facilitate deposition of histone B4 onto linker DNA. Required for both remodeling of sperm chromatin into nucleosomes, and linker histone binding to nucleosome core dimers. Plays a role in tissue-specific gene regulation. Required for primitive hemopoiesis, acting upstream of tal1/scl.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
353441156	258	nucleosome assembly protein 1 [Elaeis gu	0.967	0.348	0.655	2e-27
224087993	378	nucleosome/chromatin assembly factor gro	1.0	0.246	0.634	4e-27
359482848	381	PREDICTED: nucleosome assembly protein 1	1.0	0.244	0.612	3e-26
255546129	372	nucleosome assembly protein, putative [R	1.0	0.25	0.612	4e-26
449446598	375	PREDICTED: nucleosome assembly protein 1	0.956	0.237	0.629	6e-26
356550428	362	PREDICTED: LOW QUALITY PROTEIN: nucleoso	0.935	0.240	0.640	7e-26
388508692	370	unknown [Lotus japonicus]	0.956	0.240	0.617	8e-26
297738653	386	unnamed protein product [Vitis vinifera]	0.946	0.227	0.640	1e-25
356556775	366	PREDICTED: nucleosome assembly protein 1	0.946	0.240	0.602	1e-25
225444889	368	PREDICTED: nucleosome assembly protein 1	0.946	0.239	0.640	2e-25

>gi|353441156|gb|AEQ94162.1| nucleosome assembly protein 1 [Elaeis guineensis]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 70/90 (77%)

Query: 4   SEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTF 63
           +EDKA  EKGVPDFW  AM+++  L + I   D+GALK+L DIKWCRI++ +GFKLEF F
Sbjct: 49  AEDKANGEKGVPDFWLTAMKTNEVLAEEITERDEGALKFLKDIKWCRIDNPKGFKLEFFF 108

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
             NPYFKNSVL KTY MIDE D VLE+AIG
Sbjct: 109 DTNPYFKNSVLTKTYHMIDEDDPVLEKAIG 138

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q   KA +EKGVPDFW +AM+++  L + I   D+GALKYL DIKWCRI D +GFKLE
Sbjct: 112 MDQDGGKAGEEKGVPDFWLVAMKNNEVLAEEITERDEGALKYLKDIKWCRIEDPKGFKLE 171

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
           F F  NPYFKNSVL KTY MIDE + +LE+AIG
Sbjct: 172 FFFDTNPYFKNSVLTKTYHMIDEDEPILEKAIG 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q EDKAT+EKGVP+FW  AM+++  L + I   D+GALKYL DIKW RI++ +GFKLE
Sbjct: 120 MDQEEDKATEEKGVPNFWLTAMKTNEVLAEEISERDEGALKYLKDIKWYRIDNPKGFKLE 179

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
           F F  NPYFKNS+L KTY MID+ + +LE+AIG
Sbjct: 180 FYFDANPYFKNSILTKTYHMIDDDEPILEKAIG 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546129|ref|XP_002514124.1| nucleosome assembly protein, putative [Ricinus communis] gi|223546580|gb|EEF48078.1| nucleosome assembly protein, putative [Ricinus communis]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 70/93 (75%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q   +A +EKGVPDFW  AM+++  L + I   D+GALKYL DIKWCRI+D +GFKLE
Sbjct: 111 MEQEGAEADEEKGVPDFWLTAMKNNEVLAEEITERDEGALKYLKDIKWCRIDDPKGFKLE 170

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
           F F  NPYFKN+VL KTY MIDE + +LE+AIG
Sbjct: 171 FFFDTNPYFKNTVLTKTYHMIDEDEPILEKAIG 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446598|ref|XP_004141058.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Cucumis sativus] gi|449488040|ref|XP_004157924.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           EDK   EKGVPDFW  AM+++  L + I   D+GALKYL DIKWCRI++ +GFKLEF F 
Sbjct: 116 EDKDAAEKGVPDFWLTAMKNNEVLAEEITERDEGALKYLKDIKWCRIDNPKGFKLEFYFE 175

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            NP+FKNSVL KTY MIDE + +LE+AIG
Sbjct: 176 TNPFFKNSVLTKTYHMIDEDEPILEKAIG 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550428|ref|XP_003543589.1| PREDICTED: LOW QUALITY PROTEIN: nucleosome assembly protein 1-like 1-like [Glycine max]

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 7   KAT--KEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           KAT  +EKGVPDFW  AM+++  L + I   D+GALKYL DIKWCRI+D +GFKL+F F 
Sbjct: 114 KATNLQEKGVPDFWLTAMKTNETLAEEITERDEGALKYLKDIKWCRIDDPKGFKLDFYFD 173

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            NPYFKNSVL KTY MID+ D +LE+AIG
Sbjct: 174 SNPYFKNSVLTKTYHMIDDDDPILEKAIG 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508692|gb|AFK42412.1| unknown [Lotus japonicus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 69/89 (77%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           EDKA +EKGVP+FW  AM+ +  L + I   D+GALKYL DIKWC++++ +GFKL+F F 
Sbjct: 114 EDKAAEEKGVPNFWLNAMKINETLAEEITERDEGALKYLQDIKWCKVDEPKGFKLDFYFD 173

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            NPYFKNSVL KTY MIDE D +LE+AIG
Sbjct: 174 SNPYFKNSVLTKTYHMIDEEDPILEKAIG 202

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           EDKA +EKGVPDFW  AM+++  L + I   D+GALKY+ DIKWCRI++ +GFKLEF F 
Sbjct: 137 EDKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFD 195

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            NPYFKNSVL KTY MIDE + +LE+AIG
Sbjct: 196 TNPYFKNSVLTKTYHMIDEDEPILEKAIG 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556775|ref|XP_003546698.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Glycine max]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 69/88 (78%)

Query: 6   DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGP 65
           +KA ++KGVP+FW  AM+++  L + I   D+G+LKYL DIKWCRI+D +GFKLEF F  
Sbjct: 115 NKAAEDKGVPEFWLTAMKTNEALAEEITERDEGSLKYLKDIKWCRIDDPKGFKLEFYFDS 174

Query: 66  NPYFKNSVLEKTYRMIDETDIVLEEAIG 93
           NPYFKNSVL KTY MI++ D +LE+AIG
Sbjct: 175 NPYFKNSVLTKTYHMIEDDDPILEKAIG 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           EDKA +EKGVPDFW  AM+++  L + I   D+GALKY+ DIKWCRI++ +GFKLEF F 
Sbjct: 119 EDKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFD 177

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            NPYFKNSVL KTY MIDE + +LE+AIG
Sbjct: 178 TNPYFKNSVLTKTYHMIDEDEPILEKAIG 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2050424	379	NAP1;2 "AT2G19480" [Arabidopsi	0.978	0.240	0.582	1.9e-26
TAIR|locus:2120785	372	NAP1;1 "AT4G26110" [Arabidopsi	0.978	0.244	0.538	4.6e-25
TAIR|locus:2164595	374	NAP1;3 "AT5G56950" [Arabidopsi	1.0	0.248	0.526	4.2e-24
WB|WBGene00017075	316	nap-1 [Caenorhabditis elegans	0.720	0.212	0.492	2.2e-13
UNIPROTKB|F1P1B7	376	NAP1L4 "Uncharacterized protei	0.913	0.226	0.428	2.4e-12
POMBASE|SPCC364.06	393	nap1 "nucleosome assembly prot	0.774	0.183	0.438	5.8e-12
UNIPROTKB|F8VUX1	237	NAP1L1 "Nucleosome assembly pr	0.881	0.345	0.395	1.7e-11
UNIPROTKB|F8W118	209	NAP1L1 "Nucleosome assembly pr	0.881	0.392	0.395	1.7e-11
UNIPROTKB|F8VY35	264	NAP1L1 "Nucleosome assembly pr	0.881	0.310	0.395	2.6e-11
UNIPROTKB|E1BZS2	393	NAP1L1 "Uncharacterized protei	0.892	0.211	0.388	2.6e-11

TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 53/91 (58%), Positives = 69/91 (75%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
             Q EDK+ +EKGVPDFW IA++++    + I   D+GALKYL DIKW R+ + +GFKLEF 
Sbjct:   115 QGEDKSAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFF 174

Query:    63 FGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
             F  NPYFKN+VL KTY MIDE + +LE+A+G
Sbjct:   175 FDQNPYFKNTVLTKTYHMIDEDEPILEKALG 205

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/91 (53%), Positives = 68/91 (74%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
             Q E+K  +EKGVP FW  A++++  + + +   D+GALKYL DIKWC+I + +GFKLEF 
Sbjct:   116 QGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFF 175

Query:    63 FGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
             F  NPYFKN+VL K+Y MIDE + +LE+A+G
Sbjct:   176 FDTNPYFKNTVLTKSYHMIDEDEPLLEKAMG 206

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 49/93 (52%), Positives = 67/93 (72%)

Query:     1 MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
             M Q ++K  +EKGVP FW  A++++  + + I   D+GAL YL DIKWC+I + +GFKLE
Sbjct:   113 MDQGDEKTAEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLE 172

Query:    61 FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
             F F  NPYFKN++L K Y MIDE + +LE+AIG
Sbjct:   173 FFFDQNPYFKNTLLTKAYHMIDEDEPLLEKAIG 205

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

WB|WBGene00017075 nap-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 33/67 (49%), Positives = 40/67 (59%)

Query:    12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
             KG+ DFW  A+ +H  + + I  HD   L YLTD+      D  GFK+EF F  NPYFKN
Sbjct:   111 KGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKN 170

Query:    72 SVLEKTY 78
              VL KTY
Sbjct:   171 QVLTKTY 177

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

UNIPROTKB|F1P1B7 NAP1L4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/91 (42%), Positives = 51/91 (56%)

Query:     1 MVQSEDKATKE----KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDS 54
             +V  E+KA  E    KG+PDFWF    +   L + +  +D+  LK+L DIK  +      
Sbjct:   143 VVVIEEKAEAEEINVKGIPDFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQP 202

Query:    55 EGFKLEFTFGPNPYFKNSVLEKTYRMIDETD 85
               F LEF FGPN YF N+VL KTY+M  E D
Sbjct:   203 MSFSLEFHFGPNDYFSNTVLTKTYKMKSEPD 233

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

POMBASE|SPCC364.06 nap1 "nucleosome assembly protein Nap1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 168 (64.2 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query:    12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
             KG+P+FW  AM++   L + I   D+GAL +L DI+   + +  GFKLEF F  NP+F N
Sbjct:   162 KGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYM-EKPGFKLEFEFAENPFFTN 220

Query:    72 SVLEKTYRMIDET 84
              +L KTY  ++E+
Sbjct:   221 KILTKTYYYMEES 233

GO:0000790 "nuclear chromatin" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006334 "nucleosome assembly" evidence=ISO

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IGI;IMP

GO:0042393 "histone binding" evidence=ISO

UNIPROTKB|F8VUX1 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE---GFKL 59
             + +++    KG+P+FW    ++   L   +  HD+  LK+L DIK  + +D+     F L
Sbjct:   129 KKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIK-VKFSDAGQPMSFVL 187

Query:    60 EFTFGPNPYFKNSVLEKTYRMIDETD 85
             EF F PN YF N VL KTYRM  E D
Sbjct:   188 EFHFEPNEYFTNEVLTKTYRMRSEPD 213

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F8W118 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE---GFKL 59
             + +++    KG+P+FW    ++   L   +  HD+  LK+L DIK  + +D+     F L
Sbjct:   115 KKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIK-VKFSDAGQPMSFVL 173

Query:    60 EFTFGPNPYFKNSVLEKTYRMIDETD 85
             EF F PN YF N VL KTYRM  E D
Sbjct:   174 EFHFEPNEYFTNEVLTKTYRMRSEPD 199

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|F8VY35 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE---GFKL 59
             + +++    KG+P+FW    ++   L   +  HD+  LK+L DIK  + +D+     F L
Sbjct:   156 KKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIK-VKFSDAGQPMSFVL 214

Query:    60 EFTFGPNPYFKNSVLEKTYRMIDETD 85
             EF F PN YF N VL KTYRM  E D
Sbjct:   215 EFHFEPNEYFTNEVLTKTYRMRSEPD 240

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|E1BZS2 NAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 33/85 (38%), Positives = 46/85 (54%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLE 60
             + +++    KG+P+FW    ++   L   +  HD+  LK+L DIK  +  +     F LE
Sbjct:   157 KKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEVGQPMSFTLE 216

Query:    61 FTFGPNPYFKNSVLEKTYRMIDETD 85
             F F PN YF N VL KTYRM  E D
Sbjct:   217 FHFEPNDYFTNEVLTKTYRMRSEPD 241

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFA902 nucleosome/chromatin assembly factor group (378 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	2e-28
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	9e-16

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  101 bits (254), Expect = 2e-28
 Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF 63
           E++  +EKG+P FW  A+++H  L + I   D+ ALKYLTDI+   + D  +GFKL F F
Sbjct: 57  EEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHF 116

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLEEAIG 93
            PNPYF N VL KTY + DE D    ++ G
Sbjct: 117 APNPYFTNEVLTKTYHLKDEGDPFELKSEG 146

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 69.8 bits (171), Expect = 9e-16
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYFK 70
           G+P FW  AM++++ L   I  HD+  L YL+DI   +   N  EGF L FTF PNP+F 
Sbjct: 98  GLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFS 157

Query: 71  NSVLEKTYRM 80
           N+VL KTY M
Sbjct: 158 NTVLTKTYHM 167

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	99.95
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	99.95
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	99.94
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	99.94
KOG1508	260	consensus DNA replication factor/protein phosphata	99.55

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.1e-29  Score=192.09  Aligned_cols=85  Identities=46%  Similarity=0.796  Sum_probs=77.5

Q ss_pred             cccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCC-CceEEEEEeCCCCCCcCcEEEEEEEec---CCC
Q 034480            9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS-EGFKLEFTFGPNPYFKNSVLEKTYRMI---DET   84 (93)
Q Consensus         9 ~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~-~~f~l~F~F~~N~yF~N~~L~K~~~~~---~~~   84 (93)
                      +..+|||+||++||+|+++++++|+++|++||+||+||++.+.+++ .+|+|.|+|++||||+|++|||+|+++   +..
T Consensus       155 ~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~  234 (358)
T KOG1507|consen  155 EDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDED  234 (358)
T ss_pred             ccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCc
Confidence            4679999999999999999999999999999999999999999888 499999999999999999999999999   566


Q ss_pred             Ce------eeecccC
Q 034480           85 DI------VLEEAIG   93 (93)
Q Consensus        85 ~~------~~~~~~~   93 (93)
                      +|      .+..++|
T Consensus       235 ~P~~~~G~~i~~~~G  249 (358)
T KOG1507|consen  235 DPFAFDGPEIEKCEG  249 (358)
T ss_pred             CCcccCCceEEeeec
Confidence            67      4555555

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=99.95  E-value=1.2e-28  Score=176.15  Aligned_cols=84  Identities=20%  Similarity=0.389  Sum_probs=74.7

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEE-cCCCCceEEEEEeCC--CCCCcCcEEEEEEEecC
Q 034480            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCR-INDSEGFKLEFTFGP--NPYFKNSVLEKTYRMID   82 (93)
Q Consensus         6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~-~~d~~~f~l~F~F~~--N~yF~N~~L~K~~~~~~   82 (93)
                      .++++|+|||+||++||+||+.++ +|+++|+++|+||+||+|+. .+++++|+|+|+|++  ||||+|++|+|+|++++
T Consensus        28 kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~  106 (185)
T PTZ00008         28 KRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKN  106 (185)
T ss_pred             HHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEec
Confidence            367889999999999999999999 99999999999999999997 455679999999975  89999999999999987


Q ss_pred             CCCeeeec
Q 034480           83 ETDIVLEE   90 (93)
Q Consensus        83 ~~~~~~~~   90 (93)
                      +++.+..+
T Consensus       107 ~~~~~~~~  114 (185)
T PTZ00008        107 NQEKVVEV  114 (185)
T ss_pred             CCCceeee
Confidence            76654443

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=99.94  E-value=1.6e-27  Score=183.02  Aligned_cols=83  Identities=41%  Similarity=0.769  Sum_probs=72.6

Q ss_pred             cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCC--CceEEEEEeCCCCCCcCcEEEEEEEecC---CCC
Q 034480           11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS--EGFKLEFTFGPNPYFKNSVLEKTYRMID---ETD   85 (93)
Q Consensus        11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~--~~f~l~F~F~~N~yF~N~~L~K~~~~~~---~~~   85 (93)
                      .++||+||++||+||+.++++|+++|+++|+||+||+|++..+.  ++|+|+|+|++||||+|++|+|+|++..   .++
T Consensus        96 ~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~  175 (337)
T PTZ00007         96 TPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDE  175 (337)
T ss_pred             cCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCC
Confidence            35899999999999999999999999999999999999987653  6999999999999999999999999964   234


Q ss_pred             eeeecccC
Q 034480           86 IVLEEAIG   93 (93)
Q Consensus        86 ~~~~~~~~   93 (93)
                      |.+.+++|
T Consensus       176 p~~~~~~~  183 (337)
T PTZ00007        176 PLLSNTVA  183 (337)
T ss_pred             ceeeccee
Confidence            66555443

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=99.94  E-value=4.3e-27  Score=172.65  Aligned_cols=75  Identities=45%  Similarity=0.833  Sum_probs=71.4

Q ss_pred             cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEeCCCCCCcCcEEEEEEEecCCCC
Q 034480           11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGPNPYFKNSVLEKTYRMIDETD   85 (93)
Q Consensus        11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F~~N~yF~N~~L~K~~~~~~~~~   85 (93)
                      .+|||+||++||+||+.++.+|++.|.++|+||+||+|++..+ +++|+|+|+|++||||+|++|+|+|+++..++
T Consensus        66 ~~gIP~FW~~vl~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~  141 (244)
T PF00956_consen   66 PKGIPGFWLTVLKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGD  141 (244)
T ss_dssp             STTSTTHHHHHHHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSS
T ss_pred             ccCCCCccccccccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCC
Confidence            6779999999999999999999999999999999999999877 56999999999999999999999999998765

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=99.55  E-value=3.4e-16  Score=116.91  Aligned_cols=86  Identities=28%  Similarity=0.556  Sum_probs=78.7

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEeCCCCCCcCcEEEEEEEecCCC
Q 034480            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (93)
Q Consensus         6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F~~N~yF~N~~L~K~~~~~~~~   84 (93)
                      ..+.+++.||+||.+++.+||.+++++.+.|.+++.||.++.|+.+.+.. ++++.|+|.+|+||+|.+++|+|.++..+
T Consensus        72 ~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~  151 (260)
T KOG1508|consen   72 KRRELIKEIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESG  151 (260)
T ss_pred             hhhHHHhhcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeeccc
Confidence            35678999999999999999999999999999999999999999988776 99999999999999999999999999888


Q ss_pred             Ceeeecc
Q 034480           85 DIVLEEA   91 (93)
Q Consensus        85 ~~~~~~~   91 (93)
                      .+...++
T Consensus       152 ~~~s~~t  158 (260)
T KOG1508|consen  152 KPSSEST  158 (260)
T ss_pred             Ccccccc
Confidence            7654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		9e-11
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		9e-10
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		1e-09
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		8e-08
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		1e-07
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		2e-07

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F PNP+
Sbjct: 76  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPF 135
Query: 69  FKNSVLEKTYRM 80
           F NSVL KTY M
Sbjct: 136 FSNSVLTKTYHM 147

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F  NP+
Sbjct: 110 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 169
Query: 69  FKNSVLEKTYRM 80
           F NSVL KTY M
Sbjct: 170 FSNSVLTKTYHM 181

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F  NP+
Sbjct: 66  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 125
Query: 69  FKNSVLEKTYRM 80
           F NSVL KTY M
Sbjct: 126 FSNSVLTKTYHM 137

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 2   VQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLE 60
            Q++ +  + KG+P FW  A+E+   +   I   D   L+YL DI    + D   GFKL 
Sbjct: 100 AQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLL 159
Query: 61  FTF--GPNPYFKNSVLEKTY 78
           F F    NP+F N +L KTY
Sbjct: 160 FRFDSSANPFFTNDILCKTY 179

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 1   MVQSEDKATKE------KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS 54
           +V  E+KA  +      KG+P FW  A+E+   +   I   D   L+YL DI    + D 
Sbjct: 166 LVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDG 225
Query: 55  E-GFKLEFTF--GPNPYFKNSVLEKTY 78
             GFKL F F    NP+F N +L KTY
Sbjct: 226 RPGFKLLFRFDSSANPFFTNDILCKTY 252

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 14  VPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGPNPYFKNS 72
           +P+FW     +H ++   +   D+ A+ YLT ++     D   G++++F F  NPYF+N 
Sbjct: 78  IPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137
Query: 73  VLEKTYRMIDETD 85
           VL K + M +  D
Sbjct: 138 VLSKEFHMNESGD 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	2e-16
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	4e-15
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	2e-14
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	2e-14
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	5e-14

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score = 69.7 bits (170), Expect = 2e-16
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTF 63
           + ++     +P+FW     +H ++   +   D+ A+ YLT ++     D + G++++F F
Sbjct: 69  QKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYF 128

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLE 89
             NPYF+N VL K + M +  D   +
Sbjct: 129 DENPYFENKVLSKEFHMNESGDPSSK 154

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 66.7 bits (162), Expect = 4e-15
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN------DSEGFKLEFTF-G 64
             + +FW I +  H      I   D   +  +  IK   +       D+  F + F F G
Sbjct: 52  DEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHG 111

Query: 65  PNPYFKNSVLEKTYRMIDETD 85
               FK   + K +++    D
Sbjct: 112 IEGDFKEQQVTKVFQIKKGKD 132

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 66.1 bits (160), Expect = 2e-14
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEF 61
           Q++ +  + KG+P FW  A+E+   +   I   D   L+YL DI    + D   GFKL F
Sbjct: 174 QNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLF 233

Query: 62  T--FGPNPYFKNSVLEKTYRMIDETD 85
                 NP+F N +L KTY    E  
Sbjct: 234 RFDSSANPFFTNDILCKTYFYQKELG 259

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE----G 56
           +V + +       +P+FW  A+ +++ +   I  HD+  L YL DI+   I  ++    G
Sbjct: 98  LVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEG 157

Query: 57  FKLEFTFGPNPYFKNSVLEKTYRMIDETD 85
           F L F F  NP+F NSVL KTY M     
Sbjct: 158 FILSFYFATNPFFSNSVLTKTYHMKCVDC 186

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score = 62.8 bits (152), Expect = 5e-14
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEG---FKLEFTFGPNPY 68
           + +P FW   +   H    +IV  D   L +L  +      D+ G       F      +
Sbjct: 46  QKIPGFWANTLR-KHPALSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEF 104

Query: 69  FKNSVLEKTYRMIDETDIVLE 89
            +   L K     +  + V+E
Sbjct: 105 MEPLTLVKHVTFDNNQEKVVE 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	99.96
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	99.95
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	99.94
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	99.94
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	99.93

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=99.96  E-value=1.5e-30  Score=189.37  Aligned_cols=86  Identities=27%  Similarity=0.600  Sum_probs=72.9

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEeCCCCCCcCcEEEEEEEecCCC
Q 034480            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (93)
Q Consensus         6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F~~N~yF~N~~L~K~~~~~~~~   84 (93)
                      .++++|++||+||++||+||+.++++|+++|+++|+||+||+|++.+++. +|+|+|+|++||||+|++|+|+|++.++|
T Consensus        70 kR~eII~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g  149 (225)
T 2e50_A           70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG  149 (225)
T ss_dssp             HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred             HHHHHHhccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence            35688999999999999999999999999999999999999999987764 99999999999999999999999999999


Q ss_pred             Ceeeecc
Q 034480           85 DIVLEEA   91 (93)
Q Consensus        85 ~~~~~~~   91 (93)
                      +|.+.++
T Consensus       150 ~~~s~~t  156 (225)
T 2e50_A          150 DPSSKST  156 (225)
T ss_dssp             --CEEEC
T ss_pred             CcccCCC
Confidence            8865543

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=99.95  E-value=1.3e-28  Score=182.67  Aligned_cols=78  Identities=19%  Similarity=0.368  Sum_probs=73.0

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEc------CCCCceEEEEEeCC-CCCCcCcEEEEEE
Q 034480            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRI------NDSEGFKLEFTFGP-NPYFKNSVLEKTY   78 (93)
Q Consensus         6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~------~d~~~f~l~F~F~~-N~yF~N~~L~K~~   78 (93)
                      -++++|++||+||++||+||++++.+|+++|+++|+||+||+|++.      +++++|+|+|+|++ ||||+|++|+|+|
T Consensus        46 kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y  125 (264)
T 2zd7_A           46 KRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVF  125 (264)
T ss_dssp             HHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEE
T ss_pred             HHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEE
Confidence            3578899999999999999999999999999999999999999995      45679999999999 9999999999999


Q ss_pred             EecCC
Q 034480           79 RMIDE   83 (93)
Q Consensus        79 ~~~~~   83 (93)
                      ++..+
T Consensus       126 ~~~~~  130 (264)
T 2zd7_A          126 QIKKG  130 (264)
T ss_dssp             EEECC
T ss_pred             Eeccc
Confidence            99864

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=99.94  E-value=6.4e-28  Score=188.33  Aligned_cols=83  Identities=39%  Similarity=0.683  Sum_probs=74.3

Q ss_pred             ccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEe--CCCCCCcCcEEEEEEEecCC---
Q 034480           10 KEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF--GPNPYFKNSVLEKTYRMIDE---   83 (93)
Q Consensus        10 ~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F--~~N~yF~N~~L~K~~~~~~~---   83 (93)
                      .+++||+||++||+||+.++.+|+++|++||+||+||+|++..+ +.+|+|+|+|  ++||||+|++|||+|++..+   
T Consensus       181 ~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~  260 (417)
T 2ayu_A          181 QVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGY  260 (417)
T ss_dssp             CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCS
T ss_pred             cccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCC
Confidence            46899999999999999999999999999999999999999876 5699999999  99999999999999999854   


Q ss_pred             -CCeeeeccc
Q 034480           84 -TDIVLEEAI   92 (93)
Q Consensus        84 -~~~~~~~~~   92 (93)
                       |++++++++
T Consensus       261 ~g~~~~~~~e  270 (417)
T 2ayu_A          261 SGDFIYDHAE  270 (417)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCCccccccc
Confidence             455555443

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=99.94  E-value=2.7e-28  Score=173.90  Aligned_cols=84  Identities=20%  Similarity=0.375  Sum_probs=72.0

Q ss_pred             cccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCC-CCceEEEEEeCC--CCCCcCcEEEEEEEecCC
Q 034480            7 KATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGP--NPYFKNSVLEKTYRMIDE   83 (93)
Q Consensus         7 ~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d-~~~f~l~F~F~~--N~yF~N~~L~K~~~~~~~   83 (93)
                      ++++|++||+||++||+||++++.++ ++|+++|+||+||+|++..+ +.+|+|+|+|++  ||||+|++|+|+|++..+
T Consensus        41 R~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~  119 (193)
T 3kyp_A           41 RDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNN  119 (193)
T ss_dssp             HHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC--
T ss_pred             HHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCC
Confidence            56789999999999999999999865 79999999999999998755 459999999998  899999999999999988


Q ss_pred             CCeeeecc
Q 034480           84 TDIVLEEA   91 (93)
Q Consensus        84 ~~~~~~~~   91 (93)
                      |+++++++
T Consensus       120 g~~~~~~t  127 (193)
T 3kyp_A          120 QEKVVECT  127 (193)
T ss_dssp             --CCCCCC
T ss_pred             CCeeeccc
Confidence            88776554

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=99.93  E-value=4.2e-27  Score=180.80  Aligned_cols=80  Identities=40%  Similarity=0.710  Sum_probs=67.2

Q ss_pred             cCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcC----CCCceEEEEEeCCCCCCcCcEEEEEEEecC---C
Q 034480           11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN----DSEGFKLEFTFGPNPYFKNSVLEKTYRMID---E   83 (93)
Q Consensus        11 i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~----d~~~f~l~F~F~~N~yF~N~~L~K~~~~~~---~   83 (93)
                      .++||+||++||+||++++.+|+++|+++|+||+||+|++.+    ++++|+|+|+|++||||+|++|+|+|+++.   +
T Consensus       108 ~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~  187 (359)
T 3fs3_A          108 TPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCD  187 (359)
T ss_dssp             STTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC-----
T ss_pred             cCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCC
Confidence            459999999999999999999999999999999999999853    456999999999999999999999999985   3


Q ss_pred             CCeeeec
Q 034480           84 TDIVLEE   90 (93)
Q Consensus        84 ~~~~~~~   90 (93)
                      ++|++.+
T Consensus       188 ~dp~~~~  194 (359)
T 3fs3_A          188 NEPVLLH  194 (359)
T ss_dssp             ---CEEE
T ss_pred             CCccccc
Confidence            4676543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	1e-18
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	1e-18

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.8 bits (186), Expect = 1e-18
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEG---FKL 59
           Q++ +  + KG+P FW  A+E+   +   I   D   L+YL DI    + D         
Sbjct: 105 QNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLF 164

Query: 60  EFTFGPNPYFKNSVLEKTYRMIDETD 85
            F    NP+F N +L KTY    E  
Sbjct: 165 RFDSSANPFFTNDILCKTYFYQKELG 190

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 1e-18
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 10  KEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPY 68
               +P+FW     +H ++   +   D+ A+ YLT ++     D + G++++F F  NPY
Sbjct: 74  LIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPY 133

Query: 69  FKNSVLEKTYRMIDETDIVLE 89
           F+N VL K + M +  D   +
Sbjct: 134 FENKVLSKEFHMNESGDPSSK 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	99.95

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-31  Score=190.32  Aligned_cols=86  Identities=27%  Similarity=0.600  Sum_probs=73.7

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEeCCCCCCcCcEEEEEEEecCCC
Q 034480            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (93)
Q Consensus         6 ~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F~~N~yF~N~~L~K~~~~~~~~   84 (93)
                      .++++|++||+||++||+||+.++.+|+++|+++|+||+||+|++.+++. +|+|+|+|+|||||+|++|+|+|+++++|
T Consensus        70 ~R~~iI~gIP~FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~~~  149 (222)
T d2e50a1          70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG  149 (222)
T ss_dssp             HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred             HHHHHhccCccHHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecCCC
Confidence            36789999999999999999999999999999999999999999988765 89999999999999999999999999999


Q ss_pred             Ceeeecc
Q 034480           85 DIVLEEA   91 (93)
Q Consensus        85 ~~~~~~~   91 (93)
                      ++.++++
T Consensus       150 ~~~~~~t  156 (222)
T d2e50a1         150 DPSSKST  156 (222)
T ss_dssp             --CEEEC
T ss_pred             Ccccccc
Confidence            8876654

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.9e-29  Score=184.44  Aligned_cols=88  Identities=36%  Similarity=0.666  Sum_probs=73.8

Q ss_pred             cccccccCCCCchHHHHHhcChhhhhhhhhcchhhhccccceEEEEcCCCC-ceEEEEEe--CCCCCCcCcEEEEEEEec
Q 034480            5 EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTF--GPNPYFKNSVLEKTYRMI   81 (93)
Q Consensus         5 ~~~~~~i~~Ip~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~f~l~F~F--~~N~yF~N~~L~K~~~~~   81 (93)
                      +...+..+|||+||++||+||+.++.+|+++|+++|+||+||+|++.+++. +|+|+|+|  +|||||+|++|+|+|++.
T Consensus       107 ~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N~yF~N~vLtK~y~~~  186 (301)
T d2ayua1         107 DSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQ  186 (301)
T ss_dssp             -----CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEE
T ss_pred             ccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCCCCCCCCeEEEEEEEe
Confidence            445567799999999999999999999999999999999999999987775 89999999  689999999999999997


Q ss_pred             CC----CCeeeeccc
Q 034480           82 DE----TDIVLEEAI   92 (93)
Q Consensus        82 ~~----~~~~~~~~~   92 (93)
                      .+    +.+++.+++
T Consensus       187 ~~~~~~~~~~~~~~e  201 (301)
T d2ayua1         187 KELGYSGDFIYDHAE  201 (301)
T ss_dssp             SSCCSSSSCEEEEEE
T ss_pred             cCCCCCCCccccccC
Confidence            54    233445444