Citrus Sinensis ID: 034486

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKILANSTTIRDTK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSkhanikpviTSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKILANsttirdtk
Flexible Loop (DISEMBL)
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALskhanikpvITSTVWKELEKENKEFFEAyarknaeratvmetRERIEkilansttirdtk
Low Complexity Region (SEG)
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWkelekenkeffeAYARKNAERATVMETRERIEKILANSTTIRDTK
Disordered region (IsUnstruct)
*******YIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYAR*****************************
Disordered Region (DISOPRED)
*****AS**HLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERA***********************
Disordered Region (DISEMBL)
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKILANSTTIRDTK
Disordered Region (DISPRO)
****SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKILAN********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKILANSTTIRDTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
356572355	93	PREDICTED: uncharacterized protein LOC10	0.967	0.967	0.739	1e-31
217075626	88	unknown [Medicago truncatula] gi|3884953	0.935	0.988	0.758	1e-31
388513881	92	unknown [Lotus japonicus]	0.935	0.945	0.738	4e-31
356505142	93	PREDICTED: uncharacterized protein LOC10	0.935	0.935	0.730	2e-30
225439854	94	PREDICTED: uncharacterized protein LOC10	0.978	0.968	0.695	3e-30
224088573	82	predicted protein [Populus trichocarpa]	0.752	0.853	0.842	7e-29
356548158	96	PREDICTED: uncharacterized protein LOC10	0.881	0.854	0.731	2e-28
297806193	91	hypothetical protein ARALYDRAFT_487036 [	0.924	0.945	0.709	4e-28
42567596	91	uncharacterized protein [Arabidopsis tha	0.924	0.945	0.709	1e-27
225448833	110	PREDICTED: uncharacterized protein LOC10	0.946	0.8	0.670	1e-27

>gi|356572355|ref|XP_003554334.1| PREDICTED: uncharacterized protein LOC100785268 [Glycine max]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 80/92 (86%), Gaps = 2/92 (2%)

Query: 1  MDDSS--ASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF 58
          M+DSS  A+YI LVH LIEEC++FNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF
Sbjct: 1  MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF 60

Query: 59 FEAYARKNAERATVMETRERIEKILANSTTIR 90
          FEAY R  AERA+  ETR+RI+ ++++S+  R
Sbjct: 61 FEAYTRSRAERASERETRQRIQSVVSDSSKER 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075626|gb|ACJ86173.1| unknown [Medicago truncatula] gi|388495396|gb|AFK35764.1| unknown [Medicago truncatula]

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 77/87 (88%)

Query: 1  MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFE 60
          M+DSSA+YIHLVH LIEEC++FNMSKEECM+ALSKHANIKPVITSTVWKELEKENKEFFE
Sbjct: 1  MEDSSAAYIHLVHRLIEECILFNMSKEECMDALSKHANIKPVITSTVWKELEKENKEFFE 60

Query: 61 AYARKNAERATVMETRERIEKILANST 87
          AY R  AERA+  E R+RI  ++ +S+
Sbjct: 61 AYLRNRAERASETEMRQRIRNMVLDSS 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513881|gb|AFK45002.1| unknown [Lotus japonicus]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 80/88 (90%), Gaps = 1/88 (1%)

Query: 2  DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEA 61
          D SSA+YIHLVH LIEEC++FNMSKEECMEALSKHANI+PVITSTVWKELEKENKEFFEA
Sbjct: 3  DSSSAAYIHLVHRLIEECILFNMSKEECMEALSKHANIQPVITSTVWKELEKENKEFFEA 62

Query: 62 YARKNAE-RATVMETRERIEKILANSTT 88
          Y+R  AE RA+  ETR+RI+ +++++++
Sbjct: 63 YSRSRAEIRASETETRQRIQNMISDNSS 90

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505142|ref|XP_003521351.1| PREDICTED: uncharacterized protein LOC100808933 [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%), Gaps = 2/89 (2%)

Query: 1  MDDSS--ASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF 58
          M+DSS  A+YI LVH LIEEC++FNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF
Sbjct: 1  MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEF 60

Query: 59 FEAYARKNAERATVMETRERIEKILANST 87
          FEAY R   E+A+  ETR+RI+ ++++S+
Sbjct: 61 FEAYTRSRVEKASERETRQRIQNVVSDSS 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439854|ref|XP_002278074.1| PREDICTED: uncharacterized protein LOC100256772 [Vitis vinifera] gi|297741538|emb|CBI32670.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 78/92 (84%), Gaps = 1/92 (1%)

Query: 1  MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFE 60
          M +SSASYIH+V  LIEEC++FNMS+EECMEALSKHA+IKPVITSTVWKELEKENKEFFE
Sbjct: 1  MGESSASYIHMVQRLIEECIIFNMSREECMEALSKHADIKPVITSTVWKELEKENKEFFE 60

Query: 61 AYARKNAERATVMETRERIEKILANSTTIRDT 92
          +YA+    R + METRE  + +L++S+  RDT
Sbjct: 61 SYAKSREARGSDMETRENFQNMLSDSSE-RDT 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088573|ref|XP_002308479.1| predicted protein [Populus trichocarpa] gi|222854455|gb|EEE92002.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 66/70 (94%)

Query: 1  MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFE 60
          M DSSASYIH+VHHLIEEC++FNMSKEECMEALSKHA+IKPVITSTVWKELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVHHLIEECIIFNMSKEECMEALSKHADIKPVITSTVWKELEKENKEFFE 60

Query: 61 AYARKNAERA 70
          AY ++  E+A
Sbjct: 61 AYEKRRGEKA 70

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548158|ref|XP_003542470.1| PREDICTED: uncharacterized protein LOC100811683 [Glycine max]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 73/82 (89%)

Query: 2  DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEA 61
          D SSA+YIHLVH LIEEC++F+MS+EECMEALSKHANIKPVITSTVWK LEKENKEFF+A
Sbjct: 3  DSSSAAYIHLVHRLIEECILFHMSQEECMEALSKHANIKPVITSTVWKGLEKENKEFFKA 62

Query: 62 YARKNAERATVMETRERIEKIL 83
          Y++  AERA+  E R++I K++
Sbjct: 63 YSKSKAERASKTEVRQKIHKMV 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806193|ref|XP_002870980.1| hypothetical protein ARALYDRAFT_487036 [Arabidopsis lyrata subsp. lyrata] gi|297316817|gb|EFH47239.1| hypothetical protein ARALYDRAFT_487036 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 2  DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEA 61
          + S ASYIHLVHHLIEEC+VFNM KEECM+AL KHANIKP++TSTVWKELEKENKEFFEA
Sbjct: 5  NSSQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIVTSTVWKELEKENKEFFEA 64

Query: 62 YARKNAERATVMETRERIEKILANST 87
          Y R+  E  T  ET  RI  +L+ +T
Sbjct: 65 YERRREEIPTEKETARRIRDLLSRTT 90

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567596|ref|NP_568103.3| uncharacterized protein [Arabidopsis thaliana] gi|29028782|gb|AAO64770.1| At5g02580 [Arabidopsis thaliana] gi|110743100|dbj|BAE99442.1| hypothetical protein [Arabidopsis thaliana] gi|332003110|gb|AED90493.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 69/86 (80%)

Query: 2  DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEA 61
          + S ASYIHLVHHLIEEC+VFNM KEECM+AL KHANIKP+ITSTVWKEL KENKEFFEA
Sbjct: 5  NSSQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEA 64

Query: 62 YARKNAERATVMETRERIEKILANST 87
          Y R+  E  T  ET  RI  +L+ +T
Sbjct: 65 YERRREEIPTEKETARRIRDLLSRTT 90

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448833|ref|XP_002282451.1| PREDICTED: uncharacterized protein LOC100244913 [Vitis vinifera] gi|296086934|emb|CBI33167.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 74/91 (81%), Gaps = 3/91 (3%)

Query: 1  MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFE 60
          M DSSASYIH+V HLIE CL+F+MSKEECMEALSKHANI+PVITSTVW ELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIENCLIFHMSKEECMEALSKHANIEPVITSTVWNELEKENKEFFE 60

Query: 61 AY---ARKNAERATVMETRERIEKILANSTT 88
           Y    +   +R +  ET E I+K++++ST+
Sbjct: 61 GYNTQTQTKDDRLSEAETDELIQKMISDSTS 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2181838	91	AT5G02580 "AT5G02580" [Arabido	0.924	0.945	0.581	5.5e-22
TAIR|locus:2100676	95	AT3G55240 "AT3G55240" [Arabido	0.967	0.947	0.521	3.5e-20
TAIR|locus:2086992	88	AT3G28990 "AT3G28990" [Arabido	0.870	0.920	0.493	4.7e-16
TAIR|locus:4010713425	125	AT1G10657 "AT1G10657" [Arabido	0.451	0.336	0.476	5.3e-08
TAIR|locus:2146728	305	AT5G04090 "AT5G04090" [Arabido	0.784	0.239	0.315	0.0002
TAIR|locus:2076299	324	AT3G10250 "AT3G10250" [Arabido	0.784	0.225	0.301	0.00061

TAIR|locus:2181838 AT5G02580 "AT5G02580" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/86 (58%), Positives = 58/86 (67%)

Query:     2 DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXA 61
             + S ASYIHLVHHLIEEC+VFNM KEECM+AL KHANIKP+ITSTVW            A
Sbjct:     5 NSSQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEA 64

Query:    62 YARKNAERATVMETRERIEKILANST 87
             Y R+  E  T  ET  RI  +L+ +T
Sbjct:    65 YERRREEIPTEKETARRIRDLLSRTT 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2100676 AT3G55240 "AT3G55240" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/92 (52%), Positives = 64/92 (69%)

Query:     2 DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXA 61
             D SSASYIH+V H+IE+CL+F+MSKEEC+EALSKHANI PVITSTVW            A
Sbjct:     3 DSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKA 62

Query:    62 YARKNA--ERATVMETRERIEKILANSTTIRD 91
             Y  + +  E+ +  ET + I+KI+++S+   D
Sbjct:    63 YEERQSKQEQMSEEETNQMIQKIISDSSKESD 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0032502 "developmental process" evidence=IMP

TAIR|locus:2086992 AT3G28990 "AT3G28990" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 41/83 (49%), Positives = 54/83 (65%)

Query:     4 SSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             S A YIHLV H+IE CL FNMSKEECMEALS++ANI P+ITSTVW             Y 
Sbjct:     5 SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYE 64

Query:    64 RKNAERATVME--TRERIEKILA 84
             +K  ++ ++ E  T + I+ I++
Sbjct:    65 QKLMKKESMSEEETNQLIQNIIS 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4010713425 AT1G10657 "AT1G10657" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 20/42 (47%), Positives = 33/42 (78%)

Query:     7 SYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVW 48
             SYI +V H+IE C++  M+++EC++AL  HA+I P++T TV+
Sbjct:    22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVF 63

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146728 AT5G04090 "AT5G04090" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 23/73 (31%), Positives = 36/73 (49%)

Query:     9 IHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYARKNAE 68
             I LV +LIE CL   M+++E ++ L + A I+P  T  VW            AY  +   
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    69 RATVMETRERIEK 81
             +  +ME  E +E+
Sbjct:    74 KHQIMEYNELLEQ 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076299 AT3G10250 "AT3G10250" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query:     9 IHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYARKNAE 68
             I LV +LIE CL   M+++E ++ L + A I+P  T  VW            AY  +   
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    69 RATVMETRERIEK 81
             +  +ME  + +E+
Sbjct:    74 KHQIMEFNKLLEQ 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.125   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        81   0.00091  102 3  10 22  0.39    29
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.11u 0.15s 11.26t   Elapsed:  00:00:01
  Total cpu time:  11.11u 0.15s 11.26t   Elapsed:  00:00:01
  Start:  Thu May  9 16:53:18 2013   End:  Thu May  9 16:53:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023118001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (94 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam09713	54	pfam09713, A_thal_3526, Plant protein 1589 of unkn	1e-25
TIGR01589	57	TIGR01589, A_thal_3526, uncharacterized plant-spec	5e-21

>gnl|CDD|192339 pfam09713, A_thal_3526, Plant protein 1589 of unknown function (A_thal_3526)

 Score = 89.7 bits (223), Expect = 1e-25
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 12 VHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAY 62
          V +LIE C+   MSKEEC+ AL KHANI P  TSTVWK+LEKEN EFF AY
Sbjct: 1  VQNLIERCIQLYMSKEECVNALQKHANISPKFTSTVWKQLEKENPEFFRAY 51

This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown. Length = 54

>gnl|CDD|130650 TIGR01589, A_thal_3526, uncharacterized plant-specific domain TIGR01589

 Score = 77.9 bits (192), Expect = 5e-21
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 9  IHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAY 62
          I LV + IE C+   MSKEE +  L ++A I P  T  VW  LEKEN +FF  Y
Sbjct: 1  IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCY 54

This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
TIGR01589	57	A_thal_3526 uncharacterized plant-specific domain	100.0
PF09713	54	A_thal_3526: Plant protein 1589 of unknown functio	100.0
PF13565	77	HTH_32: Homeodomain-like domain	83.34
COG1725	125	Predicted transcriptional regulators [Transcriptio	82.59
smart00411	90	BHL bacterial (prokaryotic) histone like domain.	81.37

>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589

Probab=100.00  E-value=2.4e-37  Score=196.80  Aligned_cols=57  Identities=46%  Similarity=0.673  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhc
Q 034486            9 IHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK   65 (93)
Q Consensus         9 I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~   65 (93)
                      |++|||||||||++|||++|||++|++||||+|+||++||++||+||||||+|||.+
T Consensus         1 i~~Vq~lIE~Cl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~LekeN~eFF~aY~~~   57 (57)
T TIGR01589         1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKTH   57 (57)
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999999999975

This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.

>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length

Probab=100.00  E-value=2.1e-36  Score=190.51  Aligned_cols=54  Identities=65%  Similarity=1.058  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhc
Q 034486           12 VHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK   65 (93)
Q Consensus        12 VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~   65 (93)
                      ||+||||||++|||++|||++|++||||+|+||.+||++||+||||||+||++|
T Consensus         1 Vq~lIErCl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~Le~eN~eFF~aY~~r   54 (54)
T PF09713_consen    1 VQNLIERCLQLYMSKEECVRALQKQANIEPVFTSTVWQKLEKENPEFFKAYYTR   54 (54)
T ss_pred             CchHHHHHHHHcCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHCHHHHHHhhcC
Confidence            799999999999999999999999999999999999999999999999999975

It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.

>PF13565 HTH_32: Homeodomain-like domain

Probab=83.34  E-value=3.8  Score=24.95  Aligned_cols=42  Identities=21%  Similarity=0.136  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHh-hCCHHHHHHHHHhhcCCCc-hhHHHHHHH
Q 034486            9 IHLVHHLIEECLVF-NMSKEECMEALSKHANIKP-VITSTVWKE   50 (93)
Q Consensus         9 I~~VQ~LIErCLql-yMsk~E~v~~L~~~a~I~P-~~T~~VW~~   50 (93)
                      -.+.+.+++-.... .+|..++...|..++||.. .=-++||+-
T Consensus        33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            34445555554444 7999999999999999864 334567653

>COG1725 Predicted transcriptional regulators [Transcription]

Probab=82.59  E-value=2.6  Score=30.26  Aligned_cols=51  Identities=18%  Similarity=0.361  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhCCHHH---HHHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486            5 SASYIHLVHHLIEECLVFNMSKEE---CMEALSKHANIKPVITSTVWKELEKEN   55 (93)
Q Consensus         5 s~~~I~~VQ~LIErCLqlyMsk~E---~v~~L~~~a~I~P~~T~~VW~~LEkeN   55 (93)
                      ..-|.+.++.+.+.++.--+...|   -|+.|..+.+|+|..++-++++||++.
T Consensus        10 ~PIY~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnTv~raY~eLE~eG   63 (125)
T COG1725          10 KPIYEQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPNTVQRAYQELEREG   63 (125)
T ss_pred             CCHHHHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence            466889999999999999998887   579999999999999999999999874

>smart00411 BHL bacterial (prokaryotic) histone like domain

Probab=81.37  E-value=3.4  Score=26.13  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=26.0

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034486           24 MSKEECMEALSKHANIKPVITSTVWKELEK   53 (93)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LEk   53 (93)
                      ||++|+++.++++.++.+.-...|++.|..
T Consensus         1 mtk~eli~~ia~~~~~~~~~v~~vl~~l~~   30 (90)
T smart00411        1 MTKSELIDAIAEKAGLSKKDAKAAVDAFLE   30 (90)
T ss_pred             CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            899999999999999998888888776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	85.88

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=85.88  E-value=1.5  Score=28.02  Aligned_cols=38  Identities=24%  Similarity=0.492  Sum_probs=31.1

Q ss_pred             HHHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCCchhH
Q 034486            6 ASYIHLVHHL--------IEECLVFN-MSKEECMEALSKHANIKPVIT   44 (93)
Q Consensus         6 ~~~I~~VQ~L--------IErCLqly-Msk~E~v~~L~~~a~I~P~~T   44 (93)
                      .+.|..|+.|        |.+||..| -+-|.+|.+|.+. ++.|...
T Consensus        14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~   60 (71)
T 2di0_A           14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS   60 (71)
T ss_dssp             HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred             HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence            3567777765        89999998 8999999999985 8877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	82.43
d1b8za_	90	HU protein {Thermotoga maritima [TaxId: 2336]}	82.4
d2q0ta1	257	Hypothetical protein Bxeno_B2006 {Burkholderia xen	82.1
d1exea_	99	Transcription factor 1, TF1 {Bacteriophage SPO1 [T	81.16
d1mula_	90	HU protein {Escherichia coli [TaxId: 562]}	80.96
d2es9a1	97	Hypothetical protein YoaC {Salmonella typhimurium	80.04

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=1.3  Score=26.41  Aligned_cols=37  Identities=24%  Similarity=0.508  Sum_probs=30.0

Q ss_pred             HHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCCchhH
Q 034486            7 SYIHLVHHL--------IEECLVFN-MSKEECMEALSKHANIKPVIT   44 (93)
Q Consensus         7 ~~I~~VQ~L--------IErCLqly-Msk~E~v~~L~~~a~I~P~~T   44 (93)
                      +.|..||.+        |.+||.-| .+.|+||.+|.+. ++.|...
T Consensus         8 s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe~-~Lpp~L~   53 (63)
T d2di0a1           8 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS   53 (63)
T ss_dssp             HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence            457777765        89999777 7999999999985 7888754

>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Thermotoga maritima [TaxId: 2336]

Probab=82.40  E-value=0.8  Score=27.48  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034486           24 MSKEECMEALSKHANIKPVITSTVWKEL   51 (93)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~~T~~VW~~L   51 (93)
                      |||.|+++.|+++.|+...-...+++.+
T Consensus         1 MnK~eli~~ia~~~~~s~~~~~~~~~~~   28 (90)
T d1b8za_           1 MNKKELIDRVAKKAGAKKKDVKLILDTI   28 (90)
T ss_dssp             CCHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            9999999999999999887777666543

>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}

class: All alpha proteins
fold: AhpD-like
superfamily: AhpD-like
family: AhpD
domain: Hypothetical protein Bxeno B2006
species: Burkholderia xenovorans [TaxId: 36873]

Probab=82.10  E-value=1.6  Score=30.59  Aligned_cols=74  Identities=22%  Similarity=0.299  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHh---------------------hcCCCc--------------------hhHHHHHH
Q 034486           11 LVHHLIEECLVFNMSKEECMEALSK---------------------HANIKP--------------------VITSTVWK   49 (93)
Q Consensus        11 ~VQ~LIErCLqlyMsk~E~v~~L~~---------------------~a~I~P--------------------~~T~~VW~   49 (93)
                      .+..-+..++..-.|++|+.+.|+-                     ..||.+                    .+-...|+
T Consensus        78 ~~~~h~~~al~~G~t~~ei~E~l~~~~~~G~~~~~~~~~~~~ev~~e~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (257)
T d2q0ta1          78 GVARHIERALSFGATREELIEVLELVSTIGIHTSNVGVPVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWE  157 (257)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHTTSCCSCCCCCHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHHHhccccHHHH
Confidence            4677788999999999999988642                     122322                    24447799


Q ss_pred             HHHHhCHHHHHHHHhcHHH----HHhHHHHHHHHHHHHh
Q 034486           50 ELEKENKEFFEAYARKNAE----RATVMETRERIEKILA   84 (93)
Q Consensus        50 ~LEkeNpeFFkaY~~~~~~----~~~~~~~~~~iq~~~s   84 (93)
                      .|-+..|+||++|..-...    ......+.++|--.++
T Consensus       158 ~~~~~~P~~~~~~~~~~~~~~~~~~L~~k~reLi~la~~  196 (257)
T d2q0ta1         158 GLLELDPDLFEAYVEFSSVPWRTGVLSPKIKEFMYCAFD  196 (257)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            9999999999999653322    2245667777766554

>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: Transcription factor 1, TF1
species: Bacteriophage SPO1 [TaxId: 10685]

Probab=81.16  E-value=0.6  Score=28.72  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034486           24 MSKEECMEALSKHANIKPVITSTVWKELE   52 (93)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LE   52 (93)
                      |||.|+++.|+++.|+.+.-...|++.+.
T Consensus         1 M~K~eli~~ia~~~~ls~~~~~~~~~~~~   29 (99)
T d1exea_           1 MNKTELIKAIAQDTGLTQVSVSKMLASFE   29 (99)
T ss_dssp             CCTTHHHHHHHHHHCSCCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            89999999999999999998888876554

>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli [TaxId: 562]

Probab=80.96  E-value=1.1  Score=26.95  Aligned_cols=26  Identities=12%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHH
Q 034486           24 MSKEECMEALSKHANIKPVITSTVWK   49 (93)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~~T~~VW~   49 (93)
                      ||+.|++++|+++.|+...-...+-+
T Consensus         1 M~K~eli~~ia~~~~ltk~~~~~~v~   26 (90)
T d1mula_           1 MNKTQLIDVIAEKAELSKTQAKAALE   26 (90)
T ss_dssp             CCHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCcCHHHHHHHHH
Confidence            99999999999999987765554433

>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: YoaC-like
superfamily: YoaC-like
family: YoaC-like
domain: Hypothetical protein YoaC
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.04  E-value=0.5  Score=30.45  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=27.4

Q ss_pred             CHHHHHHHHHhhcCCCchhHHHH--HHHHHH-------hCHHHHHHHHh
Q 034486           25 SKEECMEALSKHANIKPVITSTV--WKELEK-------ENKEFFEAYAR   64 (93)
Q Consensus        25 sk~E~v~~L~~~a~I~P~~T~~V--W~~LEk-------eNpeFFkaY~~   64 (93)
                      |.+++ .+=-.+-+-+|.||.-|  |.+--+       .|||||..|.+
T Consensus        43 s~~dv-~aRg~qegWn~gFT~K~~gWA~k~~sGerivIKnPEyFstYM~   90 (97)
T d2es9a1          43 SPEVV-VARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQ   90 (97)
T ss_dssp             CHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHH
T ss_pred             CHHHH-HHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHH
Confidence            34444 44455679999999977  544322       59999999976