Citrus Sinensis ID: 034511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Secondary Structure (PSIPRED)
ccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
milktrkvpfvnqdhelglesvpaLAVTGILLYIAAFSAGMGAVPWVVMseifpinikgvggSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Flexible Loop (DISEMBL)
milktrkvpfvnqdhelglesVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Low Complexity Region (SEG)
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Disordered region (IsUnstruct)
********PFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY***
Disordered Region (DISOPRED)
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Disordered Region (DISEMBL)
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Disordered Region (DISPRO)
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILKTRKVPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P93051	463	Sugar transporter ERD6-li	yes	no	0.923	0.183	0.717	1e-30
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.902	0.172	0.674	2e-26
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.902	0.176	0.614	4e-26
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.739	0.144	0.602	4e-20
Q9SCW7	464	Sugar transporter ERD6-li	no	no	0.869	0.172	0.425	1e-16
Q94CI7	474	Sugar transporter ERD6-li	no	no	0.923	0.179	0.458	3e-16
Q94CI6	478	Sugar transporter ERD6-li	no	no	0.923	0.177	0.447	6e-16
Q8VZT3	462	Sugar transporter ERD6-li	no	no	0.760	0.151	0.485	1e-15
Q4F7G0	462	Sugar transporter ERD6-li	no	no	0.739	0.147	0.470	1e-15
Q93Z80	458	Sugar transporter ERD6-li	no	no	0.923	0.185	0.447	2e-15

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + H++  E+VP LAV GI++YI +FSAGMGA+PWVVMSEIFPINIKGV G +ATL
Sbjct: 344 VSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATL 403

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW VSYTFNFLM+WSSYG +
Sbjct: 404 VNWFGAWAVSYTFNFLMSWSSYGTF 428

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 67/83 (80%)

Query: 10  FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
           F+ +   L LE VP+LAV G+L+Y+AAFS GMG VPWV+MSEIFPIN+KG+ GSL  LVN
Sbjct: 363 FLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVN 422

Query: 70  WFGAWLVSYTFNFLMTWSSYGKY 92
           W GAW VSYTFNFLM+WSS G +
Sbjct: 423 WSGAWAVSYTFNFLMSWSSPGTF 445

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 67/83 (80%)

Query: 10  FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
           F+ + H L L+ +PALAV+G+L+YI +FS GMGA+PWV+MSEIFPIN+KG  G L T+VN
Sbjct: 354 FLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVN 413

Query: 70  WFGAWLVSYTFNFLMTWSSYGKY 92
           W  +WLVS+TFNFLM WS +G +
Sbjct: 414 WLSSWLVSFTFNFLMIWSPHGTF 436

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 56/68 (82%)

Query: 25  LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
           LA+TG+L+Y  +FS GMG +PWV+MSEIFPI+IKG  GSL T+V+W G+W++S+TFNFLM
Sbjct: 365 LALTGVLVYTGSFSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLM 424

Query: 85  TWSSYGKY 92
            W+  G +
Sbjct: 425 NWNPAGTF 432

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW7|ERDL1_ARATH Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 56/80 (70%)

Query: 13  QDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFG 72
           Q+H    E    + + G++ Y+ +F  G+G +PWV+MSE+FP+N+K   GSL T+ NWF 
Sbjct: 348 QNHGDFQEFCSPILIVGLVGYVLSFGIGLGGLPWVIMSEVFPVNVKITAGSLVTVSNWFF 407

Query: 73  AWLVSYTFNFLMTWSSYGKY 92
           +W++ ++FNF+M WS++G Y
Sbjct: 408 SWIIIFSFNFMMQWSAFGTY 427

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  Q  +L  E  P L+   +++YIA ++ G+G +PWV+MSEIFPINIK   GS+ TL
Sbjct: 347 VAFTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTL 406

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           V++  + +V+Y FNFL  WS+ G +
Sbjct: 407 VSFSSSSIVTYAFNFLFEWSTQGTF 431

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  Q  +L  E  P      + LYI  ++ G+G +PWV+MSEIFP+NIK   GS+ TL
Sbjct: 351 VAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTL 410

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           V+W  + +V+Y FNFL+ WS+ G +
Sbjct: 411 VSWSSSSIVTYAFNFLLEWSTQGTF 435

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%)

Query: 23  PALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82
           P     GIL +   F+ GMGA+PW++MSEIFP++IK + GSL T+ NWF  W+ +Y FNF
Sbjct: 357 PIFCFIGILSFTMMFAIGMGALPWIIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNF 416

Query: 83  LMTWSSYGKY 92
           ++ WS  G +
Sbjct: 417 MLVWSPSGTF 426

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 51/68 (75%)

Query: 25  LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
           + + G++ Y+++F  G+G +PWV+MSEIFP+N+K   GSL T+ NWF  W++ Y+FNF++
Sbjct: 358 MLIVGLVGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMI 417

Query: 85  TWSSYGKY 92
            WS+ G Y
Sbjct: 418 QWSASGTY 425

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  Q+  L  E +P      IL+Y   F+ G+G +PW++MSEIFPINIK   GS+  L
Sbjct: 337 VSFTLQEMNLFPEFIPVFVFINILVYFGFFAIGIGGLPWIIMSEIFPINIKVSAGSIVAL 396

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
            +W   W VSY FNF+  WS+ G +
Sbjct: 397 TSWTTGWFVSYGFNFMFEWSAQGTF 421

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
356572152	437	PREDICTED: sugar transporter ERD6-like 7	0.923	0.194	0.741	7e-31
356572150	466	PREDICTED: sugar transporter ERD6-like 7	0.923	0.182	0.741	8e-31
255567600	481	sugar transporter, putative [Ricinus com	0.902	0.172	0.771	9e-31
356504884	471	PREDICTED: sugar transporter ERD6-like 7	0.923	0.180	0.729	1e-30
224068735	484	predicted protein [Populus trichocarpa]	0.923	0.175	0.729	5e-30
224128648	436	predicted protein [Populus trichocarpa]	0.902	0.190	0.746	3e-29
18407508	463	sugar transporter ERD6-like 7 [Arabidops	0.923	0.183	0.717	4e-29
21536914	463	putative sugar transporter [Arabidopsis	0.923	0.183	0.717	5e-29
297824915	464	hypothetical protein ARALYDRAFT_483991 [	0.923	0.183	0.717	5e-29
350539447	480	st3 protein [Solanum lycopersicum] gi|23	0.923	0.177	0.694	6e-29

>gi|356572152|ref|XP_003554234.1| PREDICTED: sugar transporter ERD6-like 7-like isoform 2 [Glycine max]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 75/85 (88%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + HE+G+E+VPALAVTGIL+YI +FS GMGA+PWVVMSEIFP+NIKG+ GS+ATL
Sbjct: 318 VAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSVATL 377

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAWL SYTFNF M+WSSYG +
Sbjct: 378 VNWFGAWLCSYTFNFFMSWSSYGTF 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572150|ref|XP_003554233.1| PREDICTED: sugar transporter ERD6-like 7-like isoform 1 [Glycine max]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 75/85 (88%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + HE+G+E+VPALAVTGIL+YI +FS GMGA+PWVVMSEIFP+NIKG+ GS+ATL
Sbjct: 347 VAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSVATL 406

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAWL SYTFNF M+WSSYG +
Sbjct: 407 VNWFGAWLCSYTFNFFMSWSSYGTF 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567600|ref|XP_002524779.1| sugar transporter, putative [Ricinus communis] gi|223535963|gb|EEF37622.1| sugar transporter, putative [Ricinus communis]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 75/83 (90%)

Query: 10  FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
           F  + ++L L++VPALAVTGILLYI +FSAGMGAVPWVVMSEIFPINIKGV GSLATL+N
Sbjct: 364 FYLKTNDLALKAVPALAVTGILLYIGSFSAGMGAVPWVVMSEIFPINIKGVAGSLATLMN 423

Query: 70  WFGAWLVSYTFNFLMTWSSYGKY 92
           WFGAW +SYT+NFLM+WSSYG +
Sbjct: 424 WFGAWTISYTYNFLMSWSSYGTF 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504884|ref|XP_003521224.1| PREDICTED: sugar transporter ERD6-like 7-like [Glycine max]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 75/85 (88%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + HE+G+E+VPALAVTGIL+YI +FS GMGA+PWVVMSEIFP+N+KG+ GS+ATL
Sbjct: 352 VAFYLKVHEVGVEAVPALAVTGILVYIGSFSIGMGAIPWVVMSEIFPVNVKGLAGSVATL 411

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
            NWFGAWL SYTFNFLM+WSSYG +
Sbjct: 412 TNWFGAWLCSYTFNFLMSWSSYGTF 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068735|ref|XP_002302812.1| predicted protein [Populus trichocarpa] gi|222844538|gb|EEE82085.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 75/85 (88%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           + F  + +EL ++SVPAL +TGILLYI +FSAGMGAVPWV+MSEIFPINIKGV GSLATL
Sbjct: 365 ISFYLKVNELAVKSVPALTLTGILLYIGSFSAGMGAVPWVIMSEIFPINIKGVAGSLATL 424

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW +SYT+N+LM+WSSYG +
Sbjct: 425 VNWFGAWAISYTYNYLMSWSSYGTF 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128648|ref|XP_002320384.1| predicted protein [Populus trichocarpa] gi|222861157|gb|EEE98699.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%)

Query: 10  FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
           F  + HEL L+S P LAVTGILLYI  FSAGMG +PWV+MSEIFP+NIKGV GSLATLVN
Sbjct: 320 FYLKVHELALKSAPMLAVTGILLYIGTFSAGMGPIPWVIMSEIFPLNIKGVSGSLATLVN 379

Query: 70  WFGAWLVSYTFNFLMTWSSYGKY 92
           WF AW VS+TFNFLM+WSSYG +
Sbjct: 380 WFCAWAVSFTFNFLMSWSSYGTF 402

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407508|ref|NP_566120.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|30690868|ref|NP_850483.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|117940159|sp|P93051.2|ERDL7_ARATH RecName: Full=Sugar transporter ERD6-like 7 gi|20197560|gb|AAD13706.2| putative sugar transporter [Arabidopsis thaliana] gi|21539441|gb|AAM53273.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|23197690|gb|AAN15372.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|330255830|gb|AEC10924.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana] gi|330255831|gb|AEC10925.1| sugar transporter ERD6-like 7 [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + H++  E+VP LAV GI++YI +FSAGMGA+PWVVMSEIFPINIKGV G +ATL
Sbjct: 344 VSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATL 403

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW VSYTFNFLM+WSSYG +
Sbjct: 404 VNWFGAWAVSYTFNFLMSWSSYGTF 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536914|gb|AAM61246.1| putative sugar transporter [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + H++  E+VP LAV GI++YI +FSAGMGA+PWVVMSEIFPINIKGV G +ATL
Sbjct: 344 VSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATL 403

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW VSYTFNFLM+WSSYG +
Sbjct: 404 VNWFGAWAVSYTFNFLMSWSSYGTF 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824915|ref|XP_002880340.1| hypothetical protein ARALYDRAFT_483991 [Arabidopsis lyrata subsp. lyrata] gi|297326179|gb|EFH56599.1| hypothetical protein ARALYDRAFT_483991 [Arabidopsis lyrata subsp. lyrata]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           V F  + H++  E+VP LAV GI++YI +FSAGMGA+PWVVMSEIFPINIKGV G +ATL
Sbjct: 345 VSFYLKVHDMAPEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATL 404

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW VSYTFNFLM+WSSYG +
Sbjct: 405 VNWFGAWAVSYTFNFLMSWSSYGTF 429

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539447|ref|NP_001233882.1| st3 protein [Solanum lycopersicum] gi|23504385|emb|CAC00697.2| putative sugar transporter [Solanum lycopersicum]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 71/85 (83%)

Query: 8   VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
           + F  + HE+ +++ P LAVTGIL+YI +FS GMGAVPWVVMSEI+PINIKG  GSLATL
Sbjct: 360 ISFYMKGHEMAIKAAPILAVTGILVYIGSFSVGMGAVPWVVMSEIYPINIKGAAGSLATL 419

Query: 68  VNWFGAWLVSYTFNFLMTWSSYGKY 92
           VNWFGAW  SYTFNFLMTW+S+G +
Sbjct: 420 VNWFGAWACSYTFNFLMTWNSFGTF 444

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.923	0.183	0.717	1.1e-30
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.902	0.172	0.674	5.6e-27
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.902	0.176	0.614	1.7e-26
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.739	0.144	0.602	5.6e-21
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.891	0.168	0.469	4.5e-18
TAIR|locus:2036039	464	AT1G08890 [Arabidopsis thalian	0.869	0.172	0.425	1.1e-17
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.891	0.168	0.457	3.4e-17
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.739	0.147	0.470	6.2e-17
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.923	0.185	0.447	1e-16
TAIR|locus:2079802	462	AT3G05400 [Arabidopsis thalian	0.760	0.151	0.485	1e-16

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query:     8 VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
             V F  + H++  E+VP LAV GI++YI +FSAGMGA+PWVVMSEIFPINIKGV G +ATL
Sbjct:   344 VSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATL 403

Query:    68 VNWFGAWLVSYTFNFLMTWSSYGKY 92
             VNWFGAW VSYTFNFLM+WSSYG +
Sbjct:   404 VNWFGAWAVSYTFNFLMSWSSYGTF 428

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 5.6e-27, P = 5.6e-27
 Identities = 56/83 (67%), Positives = 67/83 (80%)

Query:    10 FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
             F+ +   L LE VP+LAV G+L+Y+AAFS GMG VPWV+MSEIFPIN+KG+ GSL  LVN
Sbjct:   363 FLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVN 422

Query:    70 WFGAWLVSYTFNFLMTWSSYGKY 92
             W GAW VSYTFNFLM+WSS G +
Sbjct:   423 WSGAWAVSYTFNFLMSWSSPGTF 445

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 51/83 (61%), Positives = 67/83 (80%)

Query:    10 FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
             F+ + H L L+ +PALAV+G+L+YI +FS GMGA+PWV+MSEIFPIN+KG  G L T+VN
Sbjct:   354 FLLKAHGLALDIIPALAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVN 413

Query:    70 WFGAWLVSYTFNFLMTWSSYGKY 92
             W  +WLVS+TFNFLM WS +G +
Sbjct:   414 WLSSWLVSFTFNFLMIWSPHGTF 436

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 41/68 (60%), Positives = 56/68 (82%)

Query:    25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
             LA+TG+L+Y  +FS GMG +PWV+MSEIFPI+IKG  GSL T+V+W G+W++S+TFNFLM
Sbjct:   365 LALTGVLVYTGSFSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLM 424

Query:    85 TWSSYGKY 92
              W+  G +
Sbjct:   425 NWNPAGTF 432

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 39/83 (46%), Positives = 58/83 (69%)

Query:    10 FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
             FV+ D ++    +  L+V G++  +  FS GMG +PW++MSEI P+NIKG+ GS+ATL N
Sbjct:   372 FVSPDSDM-YSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKGLAGSIATLAN 430

Query:    70 WFGAWLVSYTFNFLMTWSSYGKY 92
             WF +WL++ T N L+ WSS G +
Sbjct:   431 WFFSWLITMTANLLLAWSSGGTF 453

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 34/80 (42%), Positives = 56/80 (70%)

Query:    13 QDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFG 72
             Q+H    E    + + G++ Y+ +F  G+G +PWV+MSE+FP+N+K   GSL T+ NWF 
Sbjct:   348 QNHGDFQEFCSPILIVGLVGYVLSFGIGLGGLPWVIMSEVFPVNVKITAGSLVTVSNWFF 407

Query:    73 AWLVSYTFNFLMTWSSYGKY 92
             +W++ ++FNF+M WS++G Y
Sbjct:   408 SWIIIFSFNFMMQWSAFGTY 427

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVN 69
             FV+ D  +    +  ++V G++  + + S GMG +PW++MSEI P+NIKG+ GS+ATL+N
Sbjct:   373 FVSPDSNM-YNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNIKGLAGSIATLLN 431

Query:    70 WFGAWLVSYTFNFLMTWSSYGKY 92
             WF +WLV+ T N L+ WSS G +
Sbjct:   432 WFVSWLVTMTANMLLAWSSGGTF 454

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 32/68 (47%), Positives = 51/68 (75%)

Query:    25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
             + + G++ Y+++F  G+G +PWV+MSEIFP+N+K   GSL T+ NWF  W++ Y+FNF++
Sbjct:   358 MLIVGLVGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMI 417

Query:    85 TWSSYGKY 92
              WS+ G Y
Sbjct:   418 QWSASGTY 425

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 38/85 (44%), Positives = 51/85 (60%)

Query:     8 VPFVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATL 67
             V F  Q+  L  E +P      IL+Y   F+ G+G +PW++MSEIFPINIK   GS+  L
Sbjct:   337 VSFTLQEMNLFPEFIPVFVFINILVYFGFFAIGIGGLPWIIMSEIFPINIKVSAGSIVAL 396

Query:    68 VNWFGAWLVSYTFNFLMTWSSYGKY 92
              +W   W VSY FNF+  WS+ G +
Sbjct:   397 TSWTTGWFVSYGFNFMFEWSAQGTF 421

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 34/70 (48%), Positives = 48/70 (68%)

Query:    23 PALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82
             P     GIL +   F+ GMGA+PW++MSEIFP++IK + GSL T+ NWF  W+ +Y FNF
Sbjct:   357 PIFCFIGILSFTMMFAIGMGALPWIIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNF 416

Query:    83 LMTWSSYGKY 92
             ++ WS  G +
Sbjct:   417 MLVWSPSGTF 426

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93051	ERDL7_ARATH	No assigned EC number	0.7176	0.9239	0.1835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II1899	hypothetical protein (484 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400011	hypothetical protein (117 aa)			•						0.477

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-11
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-08

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 26/65 (40%), Positives = 43/65 (66%)

Query: 20  ESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYT 79
           +S   +A+  ILL+IA F+ G G VPWV++SEIFP++++  G S+A   NW   ++V + 
Sbjct: 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438

Query: 80  FNFLM 84
           F  ++
Sbjct: 439 FPTML 443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 25  LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
           +A+  ILL+IA F+ G G VPWV++SE+FP+ ++    ++AT  NW   +L+ + F  + 
Sbjct: 349 VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIIT 408

Query: 85  TWSSYG 90
                 
Sbjct: 409 GAIGGY 414

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 25  LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84
           +A+  +L Y+AAF+   G V WV++SEIFP  I+G   ++A    W   + VS+TF  + 
Sbjct: 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424

Query: 85  TWSSYGK 91
             S    
Sbjct: 425 KNSWLVA 431

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
KOG0569	485	consensus Permease of the major facilitator superf	99.55
KOG0254	513	consensus Predicted transporter (major facilitator	99.37
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.58
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.57
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.22
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.1
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.87
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.45
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.36
TIGR00893	399	2A0114 d-galactonate transporter.	96.81
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.8
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.62
TIGR00898	505	2A0119 cation transport protein.	96.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.25
PRK10642	490	proline/glycine betaine transporter; Provisional	96.23
TIGR00891	405	2A0112 putative sialic acid transporter.	96.17
PRK12307	426	putative sialic acid transporter; Provisional	95.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.87
PRK09952	438	shikimate transporter; Provisional	95.85
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	95.85
TIGR00900	365	2A0121 H+ Antiporter protein.	95.64
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	95.56
PRK11663	434	regulatory protein UhpC; Provisional	95.23
PRK15075	434	citrate-proton symporter; Provisional	95.13
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	95.01
PRK10489	417	enterobactin exporter EntS; Provisional	94.82
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	94.66
TIGR00893	399	2A0114 d-galactonate transporter.	94.47
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	94.33
PRK03893	496	putative sialic acid transporter; Provisional	94.15
TIGR00895	398	2A0115 benzoate transport.	94.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	93.72
TIGR00895	398	2A0115 benzoate transport.	93.61
PRK15462	493	dipeptide/tripeptide permease D; Provisional	93.09
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	92.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	92.74
TIGR00900	365	2A0121 H+ Antiporter protein.	92.35
PRK12382	392	putative transporter; Provisional	92.15
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	92.14
PRK12307	426	putative sialic acid transporter; Provisional	92.04
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	92.04
PRK11663	434	regulatory protein UhpC; Provisional	91.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	91.83
PRK03893	496	putative sialic acid transporter; Provisional	91.75
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.74
TIGR00901	356	2A0125 AmpG-related permease.	91.71
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	91.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	91.49
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	91.41
PRK10213	394	nepI ribonucleoside transporter; Reviewed	90.77
PRK15075	434	citrate-proton symporter; Provisional	90.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	90.06
PRK11010	491	ampG muropeptide transporter; Validated	89.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	88.9
PLN00028	476	nitrate transmembrane transporter; Provisional	88.72
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	88.6
PRK05122	399	major facilitator superfamily transporter; Provisi	88.24
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	88.09
PRK10642	490	proline/glycine betaine transporter; Provisional	88.09
TIGR00891	405	2A0112 putative sialic acid transporter.	88.06
PRK03545	390	putative arabinose transporter; Provisional	87.9
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	87.48
PRK10473	392	multidrug efflux system protein MdtL; Provisional	87.37
PRK11902	402	ampG muropeptide transporter; Reviewed	86.98
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	86.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	86.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	86.24
PRK15011	393	sugar efflux transporter B; Provisional	86.21
PRK03699	394	putative transporter; Provisional	85.75
PRK09952	438	shikimate transporter; Provisional	85.72
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	85.46
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	85.44
PRK11195	393	lysophospholipid transporter LplT; Provisional	85.33
PF13347	428	MFS_2: MFS/sugar transport protein	85.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	85.18
PRK10406	432	alpha-ketoglutarate transporter; Provisional	85.17
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	85.14
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	84.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	84.7
PRK15403	413	multidrug efflux system protein MdtM; Provisional	84.64
TIGR00898	505	2A0119 cation transport protein.	84.38
PRK09874	408	drug efflux system protein MdtG; Provisional	84.36
PRK10504	471	putative transporter; Provisional	84.04
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	84.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	83.13
PRK10054	395	putative transporter; Provisional	82.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	82.63
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	82.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	82.34
PRK12382	392	putative transporter; Provisional	81.5
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	81.47
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	81.36
PRK03545	390	putative arabinose transporter; Provisional	80.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	80.65
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	80.07

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.6e-14  Score=101.65  Aligned_cols=72  Identities=29%  Similarity=0.607  Sum_probs=68.1

Q ss_pred             chhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 034511           20 ESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGK   91 (92)
Q Consensus        20 ~~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~   91 (92)
                      ++.+|..++++++|+++|++|+||+||.+.+|++|++.|+.+++++..+||+.++++.+.||++.+..|..+
T Consensus       364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~  435 (485)
T KOG0569|consen  364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYV  435 (485)
T ss_pred             hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            578888999999999999999999999999999999999999999999999999999999999999888543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.37  E-value=2.9e-12  Score=90.54  Aligned_cols=70  Identities=39%  Similarity=0.743  Sum_probs=65.7

Q ss_pred             cchhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           19 LESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        19 ~~~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .....+.+++.+++|...|+.|++|+||++.+|+||.|+|+++.+++..+||..++++.+.+|.+.+..+
T Consensus       390 ~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~  459 (513)
T KOG0254|consen  390 SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG  459 (513)
T ss_pred             ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4567889999999999999999999999999999999999999999999999999999999999987754

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.58  E-value=1.6e-07  Score=66.29  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             HHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511           32 LYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW   86 (92)
Q Consensus        32 ~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~   86 (92)
                      ++.++++.|+++++|.+.+|++|++.|+++.+++...+|+.+++.+.++|++.+.
T Consensus       400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            3445567889999999999999999999999999999999999999999999873

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.57  E-value=6.8e-10  Score=76.60  Aligned_cols=68  Identities=26%  Similarity=0.603  Sum_probs=60.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           21 SVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        21 ~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +.++..+++..++...++.|+++++|.+.+|+||++.|+++.+++..++|+.+++.+..+|++.+..+
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566667777788899999999999999999999999999999999999999999999999887665

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.22  E-value=1.5e-06  Score=61.65  Aligned_cols=59  Identities=22%  Similarity=0.279  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           27 VTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        27 i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      +++..+..++.+.|++...+++++|+||+|+|+.+.+++.+++...+.+....+.++.+
T Consensus       409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence            34555667888999999999999999999999999999999999999999999988876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.10  E-value=1.3e-05  Score=55.81  Aligned_cols=60  Identities=38%  Similarity=0.786  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        25 ~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      ..+..+.++...++.+++|..+.+.+|++|++.|+++.++....+++.+.+....+|.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344456667777777888999999999999999999999999999999999999998766

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.87  E-value=0.00011  Score=50.24  Aligned_cols=67  Identities=37%  Similarity=0.752  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           23 PALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        23 ~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      .+..+....++...++.+..+..+.+.+|.+|++.|+++.++.....++.+++.....+.+.+..++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~  448 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV  448 (481)
T ss_pred             hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3444555666777888888999999999999999999999999999999999999999988876553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.45  E-value=0.00016  Score=50.76  Aligned_cols=50  Identities=18%  Similarity=0.289  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           30 ILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF   80 (92)
Q Consensus        30 ~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~   80 (92)
                      ++..-++.+ |.-.+.|+|.+|+||+.+|+.|.|.|+..+++.+.+.+.+.
T Consensus       441 lf~arafis-g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  441 LFTARAFIS-GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             HHHHHHHHh-chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            333333334 44567899999999999999999999999999999988665

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.36  E-value=0.00043  Score=51.82  Aligned_cols=46  Identities=13%  Similarity=0.060  Sum_probs=40.3

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      +..+..+.+.+|++|++.|++++|++...+++.+.+.+.+.+.+.+
T Consensus       664 ~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       664 AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788899999999999999999999999999999888876654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.81  E-value=0.0028  Score=42.21  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=46.4

Q ss_pred             HHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           35 AAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        35 ~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..+..+..|..+.+.+|.+|.|.|+++.++...+.++.+.+.....+.+.+..+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       322 GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            344445678899999999999999999999999999999999998888877655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.80  E-value=0.0049  Score=41.00  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=44.6

Q ss_pred             hhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           38 SAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        38 ~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      ..+..+..+.+..|..|.|.|+++.++.+..+.+...+.......+.|..|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  375 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW  375 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence            3344555677889999999999999999999999999999999999988774

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.62  E-value=0.0022  Score=44.02  Aligned_cols=42  Identities=5%  Similarity=0.024  Sum_probs=37.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      +..+.+.+|++|+|.|+++.|+.+..+++.+.......+.++
T Consensus       299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            557789999999999999999999999999988887777655

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=96.61  E-value=0.0035  Score=44.14  Aligned_cols=40  Identities=10%  Similarity=0.340  Sum_probs=35.5

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN   81 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p   81 (92)
                      .+..+.+.+|++|++.|+++.++.+..+++.+.+.+....
T Consensus       428 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       428 FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            4677889999999999999999999999999888877665

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.25  E-value=0.012  Score=33.51  Aligned_cols=47  Identities=17%  Similarity=0.141  Sum_probs=39.8

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+..+.+..|.+|+|.|++..++....+.+...+.....+.+.+..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  115 (141)
T TIGR00880        69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG  115 (141)
T ss_pred             HHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence            46677889999999999999999999999999888887777766544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.23  E-value=0.017  Score=40.93  Aligned_cols=43  Identities=16%  Similarity=0.104  Sum_probs=34.6

Q ss_pred             hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511           45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS   87 (92)
Q Consensus        45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~   87 (92)
                      ...+.+|++|++.|+++.++.....+..+.+.+...+++.+..
T Consensus       363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456789999999999999988778888877777777776543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.17  E-value=0.028  Score=37.88  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=43.4

Q ss_pred             hccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           39 AGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        39 ~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+..++.+.+.+|.+|.+.|+++.|+......+...+.......+.|..|
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34456667788999999999999999999999999999999999888766

>PRK12307 putative sialic acid transporter; Provisional

Probab=95.90  E-value=0.024  Score=38.90  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=40.4

Q ss_pred             hccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           39 AGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        39 ~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .|..++.+.+..|.+|.+.|+++.|+.....++.+.+.......+.+..+
T Consensus       336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        336 VGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             ccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            35555666778999999999999999999999988888777777666554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.87  E-value=0.026  Score=39.20  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFG   72 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~   72 (92)
                      +..+.+.+|+||+|.|+.+.|++...++..
T Consensus       355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~  384 (432)
T PRK10406        355 SISGILKAEMFPAQVRALGVGLSYAVANAL  384 (432)
T ss_pred             HHHHHHHHHHCCCCccchhhhHHHHHHHHH
Confidence            456778999999999999999999887753

>PRK09952 shikimate transporter; Provisional

Probab=95.85  E-value=0.039  Score=38.58  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNW-FGAWLVSYTFNFLMTWS   87 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~-~~~~i~~~~~p~~~~~~   87 (92)
                      .+..+.+.+|.+|+|.|+.+.+++..... +.+.+.+.....+.+..
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~  407 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF  407 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35567889999999999999999877655 66777777777776643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=95.85  E-value=0.05  Score=35.68  Aligned_cols=49  Identities=16%  Similarity=0.118  Sum_probs=43.3

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ...+....+..|..|.|.|++..++....+.+...+.......+.+..+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~  329 (352)
T cd06174         281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG  329 (352)
T ss_pred             ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            3457888899999999999999999999999999999999888887555

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.64  E-value=0.054  Score=35.89  Aligned_cols=47  Identities=9%  Similarity=-0.140  Sum_probs=40.9

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+....+..|..|.|.|++..++....+++...+.......+.|..|
T Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       319 NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            46677889999999999999999999999999998888888877643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=95.56  E-value=0.023  Score=38.79  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=41.5

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS   87 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~   87 (92)
                      +..+..+.+.+|.+|.+.|+++.++....+.+...+.+.....+.+..
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence            445677788999999999999999999999999999888888877653

>PRK11663 regulatory protein UhpC; Provisional

Probab=95.23  E-value=0.047  Score=38.04  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ......+|.+|.+.|+++.++.+..+.+...+.......+.|..|
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g  401 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH  401 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence            334567999999999999999999999999999999988888655

>PRK15075 citrate-proton symporter; Provisional

Probab=95.13  E-value=0.048  Score=37.91  Aligned_cols=47  Identities=17%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~~~~   88 (92)
                      .+..+.+.+|.+|.+.|+.+.++...+... .+.+.+.....+.|..|
T Consensus       349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            455667889999999999999997666654 36666777777667655

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=95.01  E-value=0.084  Score=37.51  Aligned_cols=40  Identities=13%  Similarity=0.061  Sum_probs=32.5

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF   82 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~   82 (92)
                      +....+.+|.+|+|.|+++.++......+...+.....+.
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999888877776665554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.82  E-value=0.094  Score=36.11  Aligned_cols=46  Identities=15%  Similarity=0.057  Sum_probs=40.5

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+.+..|..|.|.|+++.++....+.+...+.....+.+.+..|
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g  376 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT  376 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence            4556788999999999999999999999999999999998888765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=94.66  E-value=0.14  Score=33.97  Aligned_cols=47  Identities=9%  Similarity=-0.017  Sum_probs=40.0

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      +....+.+|.+|.+.|++..++......+...+.......+.+..|+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  360 (377)
T TIGR00890       314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF  360 (377)
T ss_pred             hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            34456789999999999999999999999999999888888877663

>TIGR00893 2A0114 d-galactonate transporter

Probab=94.47  E-value=0.15  Score=33.90  Aligned_cols=47  Identities=11%  Similarity=0.103  Sum_probs=37.6

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus       100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  146 (399)
T TIGR00893       100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS  146 (399)
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence            45566789999999999999999998888888777766666655544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=94.33  E-value=0.067  Score=37.11  Aligned_cols=46  Identities=11%  Similarity=0.249  Sum_probs=39.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+....|.+|+|.|+++.++.+...++.+.+.+...+.+.+..|
T Consensus       352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            4556777899999999999999999999999998888888777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.15  E-value=0.085  Score=37.03  Aligned_cols=52  Identities=12%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             HhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           37 FSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        37 ~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ...+..++...+.+|.+|.+.|+++.++......+...+.......+.+..|
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence            3445555666788999999999999999999988888888877777777655

>TIGR00895 2A0115 benzoate transport

Probab=94.00  E-value=0.1  Score=34.92  Aligned_cols=47  Identities=17%  Similarity=0.134  Sum_probs=39.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      +....+.+|.+|.+.|+++.++......+...+.....+.+.+..++
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            56678899999999999999999998888888888877777766553

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=93.72  E-value=0.2  Score=35.74  Aligned_cols=46  Identities=9%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             HHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           35 AAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN   81 (92)
Q Consensus        35 ~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p   81 (92)
                      ++.+.++... +.+.+|++|+.+|..+.+.+...+++.+.+...+..
T Consensus       418 ~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~  463 (521)
T KOG0255|consen  418 FFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL  463 (521)
T ss_pred             HHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445 889999999999999999999999998888766553

>TIGR00895 2A0115 benzoate transport

Probab=93.61  E-value=0.17  Score=33.94  Aligned_cols=41  Identities=17%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN   81 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p   81 (92)
                      ..+..+.+.+|.+|.+.|+++.++......+...+......
T Consensus       355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G  395 (398)
T TIGR00895       355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG  395 (398)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34667889999999999999999999998888777655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=93.09  E-value=0.22  Score=36.05  Aligned_cols=47  Identities=13%  Similarity=0.124  Sum_probs=39.4

Q ss_pred             cchhheecccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPIN--IKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~--~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      |....+.+|+||++  .|+.+.++.....++.+++.+...+.+.+..|+
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw  167 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW  167 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence            44557889999986  799999999999999999999998888776653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.96  E-value=0.31  Score=33.54  Aligned_cols=48  Identities=8%  Similarity=-0.033  Sum_probs=38.7

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYG   90 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~   90 (92)
                      +..+...+|.+|.|.|+++.++....+.+...+....-+.+.+..||.
T Consensus        97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr  144 (368)
T TIGR00903        97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ  144 (368)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            344556699999999999999999998888888887777777666653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=92.88  E-value=0.41  Score=32.25  Aligned_cols=46  Identities=26%  Similarity=0.286  Sum_probs=36.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  143 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS  143 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4566789999999999999999988888777777666666655444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=92.74  E-value=0.16  Score=35.44  Aligned_cols=48  Identities=10%  Similarity=0.113  Sum_probs=37.5

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..|....+.+|.+|.|.|+++.++......+...+.......+.+..+
T Consensus       107 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  154 (485)
T TIGR00711       107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH  154 (485)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence            346677889999999999999999888888877777666666655444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=92.35  E-value=0.48  Score=31.31  Aligned_cols=47  Identities=9%  Similarity=-0.048  Sum_probs=36.9

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .|....+.+|.+|.+.|++..++......+...+.......+.+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  156 (365)
T TIGR00900       110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG  156 (365)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35566789999999999999999988888887777666666655444

>PRK12382 putative transporter; Provisional

Probab=92.15  E-value=0.71  Score=31.45  Aligned_cols=47  Identities=13%  Similarity=-0.007  Sum_probs=39.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      |.......|.+|.|.|+++.++.+....+.+.+.......+.+..|+
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~  367 (392)
T PRK12382        321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY  367 (392)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            44445678999999999999999999999999988888888876653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=92.14  E-value=0.43  Score=32.01  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=36.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  157 (385)
T TIGR00710       112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS  157 (385)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4455788999999999999999998888887777776666665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=92.04  E-value=0.36  Score=33.18  Aligned_cols=46  Identities=13%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +....+.+|.+|.|.|+++.++......+...+.....+.+.+..+
T Consensus       125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307        125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            4566788999999999999999887777777776666666555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=92.04  E-value=0.47  Score=33.24  Aligned_cols=43  Identities=14%  Similarity=0.269  Sum_probs=34.7

Q ss_pred             hheecccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Q 034511           46 WVVMSEIFPINIKGVGGSLATLVNWFGAWL-VSYTFNFLMTWSS   88 (92)
Q Consensus        46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i-~~~~~p~~~~~~~   88 (92)
                      ..+..|.+|++.|+++.|+.+....+.+.+ .+.....+.|..|
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            345679999999999999999888887665 4677777777655

>PRK11663 regulatory protein UhpC; Provisional

Probab=91.93  E-value=0.8  Score=31.93  Aligned_cols=47  Identities=9%  Similarity=0.056  Sum_probs=37.4

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      +....+.+|.+|.|.|++++++....+.+...+.......+.+..+|
T Consensus       130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663        130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            55667889999999999999999988888888777666666655543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=91.83  E-value=0.77  Score=32.13  Aligned_cols=47  Identities=9%  Similarity=0.048  Sum_probs=38.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW-SSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~-~~~   89 (92)
                      |....+.+|.+|.+.|++..++......+...+.......+.+. .+|
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw  197 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGW  197 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            45567899999999999999999998888888887777777665 354

>PRK03893 putative sialic acid transporter; Provisional

Probab=91.75  E-value=0.47  Score=33.33  Aligned_cols=47  Identities=9%  Similarity=0.085  Sum_probs=37.2

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+....+..|.+|.|.|+++.++......+...+.......+.+..+
T Consensus       126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893        126 YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            35566788999999999999999988888888777777666655444

>TIGR00889 2A0110 nucleoside transporter

Probab=91.74  E-value=0.65  Score=32.40  Aligned_cols=46  Identities=20%  Similarity=0.198  Sum_probs=37.2

Q ss_pred             cchhheecccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLAT-LVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~-~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +....+.+|.+|.|.|+++.++.. ..+.+...+.+.....+.+..+
T Consensus       327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            445567899999999999999997 5566788888888888887644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=91.71  E-value=0.62  Score=31.26  Aligned_cols=48  Identities=15%  Similarity=-0.056  Sum_probs=35.9

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..+....+.+|.+|.|.|+++.++......+...+.......+.+..+
T Consensus       100 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901       100 QDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            345566789999999999999999887777777766666655554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=91.55  E-value=0.5  Score=30.91  Aligned_cols=46  Identities=20%  Similarity=0.114  Sum_probs=37.1

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG  151 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555789999999999999999998888888887777776665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=91.49  E-value=0.66  Score=35.29  Aligned_cols=37  Identities=11%  Similarity=0.093  Sum_probs=28.8

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSY   78 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~   78 (92)
                      .|+.+.+.+|.+|.+.|++..++......+...+...
T Consensus       273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999988877666555554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=91.41  E-value=0.22  Score=33.29  Aligned_cols=47  Identities=19%  Similarity=0.216  Sum_probs=34.8

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLV-NWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~-~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+..+.+.+|.+|.|.|+++.++.... +.+...+.+.....+.+..|
T Consensus       330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            356678899999999999999885444 44566666777777777655

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=90.77  E-value=0.79  Score=31.61  Aligned_cols=47  Identities=11%  Similarity=-0.052  Sum_probs=37.6

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      |....+.+|.+|.|.|+++.++......+...+.....+.+.+..+|
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            56667889999999999999998888877777777777776665553

>PRK15075 citrate-proton symporter; Provisional

Probab=90.66  E-value=0.88  Score=31.69  Aligned_cols=32  Identities=19%  Similarity=0.009  Sum_probs=25.0

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAW   74 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~   74 (92)
                      +....+.+|.+|.|.|++.+++....+++...
T Consensus       136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075        136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            34557899999999999999987776655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=90.06  E-value=0.84  Score=32.12  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             hheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 034511           46 WVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMT   85 (92)
Q Consensus        46 ~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~   85 (92)
                      .....|.+|.+.|+++.|+.+...++ ...+.......+.|
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            35567999999999999999999887 55777777777777

>PRK11010 ampG muropeptide transporter; Validated

Probab=89.82  E-value=0.94  Score=32.38  Aligned_cols=46  Identities=13%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ...+....+.+|.+|.|.|+++.++......+...+.......+.+
T Consensus       123 ~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010        123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677889999999999999999998888887777666666655

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=88.90  E-value=0.58  Score=30.84  Aligned_cols=47  Identities=15%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS   87 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~   87 (92)
                      ..+....+.+|.+|.|.|++..++......+...+.......+.+..
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  148 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF  148 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence            45667788999999999999999999998888877766666554433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=88.72  E-value=1.5  Score=31.18  Aligned_cols=39  Identities=18%  Similarity=0.195  Sum_probs=29.8

Q ss_pred             hheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           46 WVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      ..+.+|.+|.|.|+++.++......+...+.....|.+.
T Consensus       145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~  183 (476)
T PLN00028        145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF  183 (476)
T ss_pred             HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999988777776666665556543

>TIGR00899 2A0120 sugar efflux transporter

Probab=88.60  E-value=1.9  Score=28.82  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=36.3

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+....+..|..|.| |+++.++......+...+.+.....+.+..|
T Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g  351 (375)
T TIGR00899       306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS  351 (375)
T ss_pred             HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            355667788999876 4589999988888888888888888777655

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=88.24  E-value=1.9  Score=29.39  Aligned_cols=46  Identities=9%  Similarity=0.031  Sum_probs=35.1

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      |.......|..|.+.|+++.++.+....+...+.......+.+..|
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  366 (399)
T PRK05122        321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG  366 (399)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333456789999999999999988888887777776666666554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=88.09  E-value=2.6  Score=30.11  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=38.3

Q ss_pred             HHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           33 YIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        33 ~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      ...++..|...+.+.+.+|+++++.|+.+..+ ....|..+....-..-++.
T Consensus       180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~  230 (521)
T KOG0255|consen  180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT  230 (521)
T ss_pred             HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            34455566667888999999999999999999 7777777766655444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=88.09  E-value=3  Score=29.62  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGA   73 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~   73 (92)
                      +....+.+|.+|.|.|++..++......+..
T Consensus       137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642        137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            4566789999999999998887655443333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=88.06  E-value=2.6  Score=28.38  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=34.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW   86 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~   86 (92)
                      +....+..|.+|.+.|+++.++......+...+.......+.+.
T Consensus       119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891       119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567789999999999999998888777777766666655544

>PRK03545 putative arabinose transporter; Provisional

Probab=87.90  E-value=1.4  Score=30.01  Aligned_cols=46  Identities=11%  Similarity=-0.057  Sum_probs=34.8

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      |....+.+|.+|.|.|+++.++....+.+...+.......+.+..+
T Consensus       116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545        116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            4555778999999999999999888777777766665555555544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=87.48  E-value=3  Score=28.67  Aligned_cols=48  Identities=17%  Similarity=0.400  Sum_probs=39.3

Q ss_pred             ccchhheecccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511           42 GAVPWVVMSEIFP-------INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY   89 (92)
Q Consensus        42 ~~i~~~~~~Eifp-------~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~   89 (92)
                      .+.++.+.+|..|       .|.|+...++.+....+...+.......+++..|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4677888888865       56678889999999999999999999988887653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=87.37  E-value=1.7  Score=29.53  Aligned_cols=46  Identities=11%  Similarity=0.020  Sum_probs=32.9

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+.+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus       110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g  155 (392)
T PRK10473        110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP  155 (392)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4566788999999999999999888777666555544444444333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=86.98  E-value=2  Score=29.53  Aligned_cols=50  Identities=14%  Similarity=0.096  Sum_probs=36.7

Q ss_pred             HHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           36 AFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        36 ~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      .++....|....+.+|..|.|.|+++.++....+.+...+.......+.+
T Consensus       106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902        106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            33444567778899999999999999999887767666666555555444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=86.70  E-value=2.4  Score=29.46  Aligned_cols=43  Identities=9%  Similarity=0.015  Sum_probs=32.8

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      .|....+.+|.+|.|.|++..++......+...+.......+.
T Consensus       114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332       114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677899999999999999988877776666655555544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=86.66  E-value=2.9  Score=27.87  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=33.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      +....+.+|.+|.|.|++..++......+...+.....|.+.+
T Consensus       109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999887777777766666666554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=86.24  E-value=1.5  Score=29.91  Aligned_cols=37  Identities=24%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYT   79 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~   79 (92)
                      +....+.+|.+|.|.|+++.++......+...+....
T Consensus       122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  158 (406)
T PRK11551        122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI  158 (406)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999998777666555554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=86.21  E-value=2.8  Score=28.74  Aligned_cols=42  Identities=12%  Similarity=0.132  Sum_probs=33.0

Q ss_pred             hheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           46 WVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..+..|.+|.+ |+++.++......+...+.......+.+..+
T Consensus       327 ~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g  368 (393)
T PRK15011        327 MLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWN  368 (393)
T ss_pred             HHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45678999976 8999999888778888888877777777554

>PRK03699 putative transporter; Provisional

Probab=85.75  E-value=6.1  Score=27.08  Aligned_cols=42  Identities=5%  Similarity=0.124  Sum_probs=29.8

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      +....+.+|.+|.|.|+++.+.......+.+.+.......+.
T Consensus       114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699        114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677899999999999988876666555555555544444

>PRK09952 shikimate transporter; Provisional

Probab=85.72  E-value=6.1  Score=27.68  Aligned_cols=34  Identities=21%  Similarity=0.017  Sum_probs=24.1

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLV   76 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~   76 (92)
                      |....+.+|.+|.|.|++..+.......+...+.
T Consensus       144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952        144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            4456789999999999988777665544444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=85.46  E-value=0.75  Score=32.06  Aligned_cols=42  Identities=14%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             heecccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Q 034511           47 VVMSEIFPINIKGVGGSLATLVNWFGA-WLVSYTFNFLMTWSS   88 (92)
Q Consensus        47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~-~i~~~~~p~~~~~~~   88 (92)
                      ....|.+|.+.|+++.|+.+..++..+ .+.+...+.+.|..|
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g  410 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  410 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence            457899999999999999998888765 456677777777554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00806 rfc RFC reduced folate carrier

Probab=85.44  E-value=3.3  Score=30.40  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=42.2

Q ss_pred             HHHHhhcccc--chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 034511           34 IAAFSAGMGA--VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYG   90 (92)
Q Consensus        34 ~~~~~~g~~~--i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~   90 (92)
                      -+.++++-++  ....++.+.+|.+-|+++.++......+..++.....+. +...||.
T Consensus       122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr  179 (511)
T TIGR00806       122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI  179 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch
Confidence            3344444333  445678999999999999999999999999998888887 4455544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=85.33  E-value=2.5  Score=29.15  Aligned_cols=43  Identities=7%  Similarity=-0.041  Sum_probs=32.1

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF   82 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~   82 (92)
                      ...|....+.+|++|.|-|+++.++......+...+....-..
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3447778899999999999999999877766665555444333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=85.26  E-value=8.2  Score=26.82  Aligned_cols=59  Identities=19%  Similarity=0.333  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhccccch-hheecccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           28 TGILLYIAAFSAGMGAVP-WVVMSEIFP-INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        28 ~~~~~~~~~~~~g~~~i~-~~~~~Eifp-~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+++..+++.-  -+| ..+.+|+.+ .|.|.+..+.......+.+.+.....|.+.+..+
T Consensus       108 ~~~~l~~~~~t~~--~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g  168 (428)
T PF13347_consen  108 VFYILFDIAYTFV--QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG  168 (428)
T ss_pred             HHHHHHHHhhhhc--cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            3444445555543  344 468999998 5789999999999999999888888888886655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=85.18  E-value=0.74  Score=30.55  Aligned_cols=36  Identities=14%  Similarity=-0.010  Sum_probs=29.5

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVS   77 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~   77 (92)
                      .|....+.+|.+|.|.|++..++......+...+..
T Consensus       101 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881       101 WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence            466778899999999999999988877777766665

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=85.17  E-value=6.5  Score=27.38  Aligned_cols=30  Identities=23%  Similarity=0.086  Sum_probs=22.9

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFG   72 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~   72 (92)
                      |....+.+|.+|.|.|++..++........
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G  172 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGG  172 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHH
Confidence            667789999999999999887655444333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=85.14  E-value=2.7  Score=27.66  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLV   76 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~   76 (92)
                      .+....+..|..|+|.|++..++....+.+...+.
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  317 FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            57777899999999999999999999988877654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=84.81  E-value=1.4  Score=30.15  Aligned_cols=38  Identities=29%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF   80 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~   80 (92)
                      +....+.+|.+|.+.|+++.++......+...+.....
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999998777776666655444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=84.70  E-value=4.2  Score=27.98  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=33.7

Q ss_pred             heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ...+|..| +.|+++.++.+....+.+.+.......+.+..|
T Consensus       338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g  378 (402)
T TIGR00897       338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG  378 (402)
T ss_pred             HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35678766 579999999999999999998888888877655

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=84.64  E-value=3.2  Score=28.83  Aligned_cols=47  Identities=15%  Similarity=0.063  Sum_probs=33.8

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+..+.+.+|.+|.|.|.+..++......+...+....-..+.+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g  168 (413)
T PRK15403        122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH  168 (413)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566789999999999999988877777666665555555544444

>TIGR00898 2A0119 cation transport protein

Probab=84.38  E-value=4.8  Score=28.43  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFG   72 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~   72 (92)
                      .+..+.+.+|.+|.+.|++..++......+.
T Consensus       198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  228 (505)
T TIGR00898       198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG  228 (505)
T ss_pred             HHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence            5678889999999999999988875444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=84.36  E-value=4.5  Score=27.49  Aligned_cols=49  Identities=16%  Similarity=0.043  Sum_probs=34.0

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..|....+..|.+|.|.|+++.++......+...+.......+.+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  170 (408)
T PRK09874        122 GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG  170 (408)
T ss_pred             hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3345555677899999999999988877766666666555555554433

>PRK10504 putative transporter; Provisional

Probab=84.04  E-value=2.5  Score=29.60  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .|....+..|.+|.+.|+++.++......+...+.......+.+..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504        116 VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence            35667788999999999999998887777666666555555555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=84.00  E-value=4.1  Score=27.90  Aligned_cols=46  Identities=17%  Similarity=0.018  Sum_probs=31.7

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+....|.+|.|.|.+..++......+...+.......+.+..+
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            5667788999999999998888776665555555444444444434

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=83.13  E-value=2.4  Score=30.33  Aligned_cols=45  Identities=18%  Similarity=0.132  Sum_probs=38.8

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .+.-...++-||+|.++.+.|+.. .+++...+..++.|.+....+
T Consensus       123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223         123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            334457899999999999999999 889999999999999887665

>PRK10054 putative transporter; Provisional

Probab=82.86  E-value=4.9  Score=27.71  Aligned_cols=44  Identities=14%  Similarity=-0.120  Sum_probs=34.7

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      .|....+.+|..|.|.|+++.++......+...+.......+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778999999999999999988888877777666665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=82.63  E-value=4.5  Score=28.26  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWL   75 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i   75 (92)
                      |....+.+|.+|.|.|++.+++......+...+
T Consensus       139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~  171 (479)
T PRK10077        139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV  171 (479)
T ss_pred             hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence            556778999999999999999876654444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=82.52  E-value=5.5  Score=31.32  Aligned_cols=49  Identities=6%  Similarity=0.033  Sum_probs=40.6

Q ss_pred             ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ...|....+.+|++|.+-|++++++......+...+....-..+.+..+
T Consensus       124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~  172 (1140)
T PRK06814        124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN  172 (1140)
T ss_pred             hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3568888999999999999999999999988888887777776665544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=82.34  E-value=5  Score=28.22  Aligned_cols=55  Identities=15%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             HHHHHhhccccchhheecccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 034511           33 YIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNW-FGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        33 ~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~-~~~~i~~~~~p~~~~~~~   88 (92)
                      +...|+.-+ .....+..|..|.|.|++++++-..... +...+.+..-..+.|..|
T Consensus       311 hG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  311 HGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             hhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            444444322 3344688999999999999999777654 667777777788887765

>PRK12382 putative transporter; Provisional

Probab=81.50  E-value=4.7  Score=27.43  Aligned_cols=44  Identities=7%  Similarity=-0.235  Sum_probs=30.4

Q ss_pred             hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ...+..|.+|.|.|++++++..........+.....+.+.+..+
T Consensus       133 ~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382        133 ALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34567899999999999998776666655555555555544444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=81.47  E-value=7.9  Score=27.00  Aligned_cols=39  Identities=10%  Similarity=-0.047  Sum_probs=28.8

Q ss_pred             chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF   82 (92)
Q Consensus        44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~   82 (92)
                      .......|.+|.|.|+++.++......+...+.......
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence            344567899999999999999887777766665544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=81.36  E-value=12  Score=26.03  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ....|..|.|.|+++.++.+....+.+.+.......+.+
T Consensus       371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577899999999999999988888777766665554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=80.80  E-value=7.2  Score=26.58  Aligned_cols=46  Identities=15%  Similarity=0.002  Sum_probs=36.0

Q ss_pred             ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ++.......|..| +.|++++++......+...+.....+.+.|..|
T Consensus       312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g  357 (390)
T PRK03545        312 GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG  357 (390)
T ss_pred             hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4444556678877 688999999998888888888888888887665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=80.65  E-value=7.5  Score=30.39  Aligned_cols=46  Identities=11%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW   86 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~   86 (92)
                      ..|....+.+|++|.+.|++++++......+...+.......+.+.
T Consensus       120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        120 YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466678999999999999999999888887777766666555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=80.07  E-value=13  Score=24.64  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF   82 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~   82 (92)
                      +....+.+|.+|.|.|++..++......+...+.....+.
T Consensus       115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883       115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455789999999999999998877777766665554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	92
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-06

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 25  LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80
           +A+  +L Y+AAF+   G V WV++SEIFP  I+G   ++A    W   + VS+TF
Sbjct: 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	92
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.15
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.01
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	93.74
2xut_A	524	Proton/peptide symporter family protein; transport	93.69
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	92.81
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	90.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	88.64
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	88.2
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	85.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	85.35
2xut_A	524	Proton/peptide symporter family protein; transport	84.26
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	82.96

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.15  E-value=8.2e-11  Score=80.19  Aligned_cols=63  Identities=37%  Similarity=0.742  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           23 PALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        23 ~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      .+..+..++++...++.|++|++|++.+|+||+++|+++.+++..++|+.+++.++++|.+.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888999999999999999999999999999999999999999999999998754

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.01  E-value=0.018  Score=38.24  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~~~~   88 (92)
                      ..+..+.+..|.+|.+.|+++.++.....++ ...+.......+.+..+
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456678899999999999999999999999 99999988888887655

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.36  E-value=0.0042  Score=42.08  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=39.1

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ..|..+.+..|.+|.+.|+++.++....+++...+.....+.+.+
T Consensus       403 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          403 ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467888999999999999999999999999999988877766543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=93.74  E-value=0.018  Score=38.54  Aligned_cols=46  Identities=4%  Similarity=-0.027  Sum_probs=37.1

Q ss_pred             cchhheecccCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLA-TLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~-~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      +..+.+.+|.+|+|.|+++.++. +..+++.+.+.+...+.+.+..+
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g  377 (417)
T 2cfq_A          331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC
Confidence            44578999999999999999995 77778888888888887766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=93.69  E-value=0.018  Score=39.38  Aligned_cols=45  Identities=20%  Similarity=0.034  Sum_probs=39.5

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ..|..+.+..|..|++.|++++++.+..+++.+.+.+...+.+.+
T Consensus       422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            457778899999999999999999999999999998888876654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=92.81  E-value=0.29  Score=32.41  Aligned_cols=48  Identities=15%  Similarity=0.012  Sum_probs=39.4

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..+....+.+|.+|.|.|+++.++......+...+.......+.+..+
T Consensus       136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  183 (451)
T 1pw4_A          136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  183 (451)
T ss_dssp             THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346667889999999999999999998888888887777777666655

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=90.51  E-value=0.55  Score=30.95  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=38.5

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..|..+.+..|.+|++ |+.+.++.. .+++...+.+.....+.+..|
T Consensus       364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            4577888889999988 999999887 677888888888888888765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=88.64  E-value=0.83  Score=30.72  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=34.6

Q ss_pred             cccchhheecccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511           41 MGAVPWVVMSEIFPINI--KGVGGSLATLVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~--R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      ..|....+.+|.+|.+.  |+++.++......+...+.......+.+..+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A          125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34667789999999988  6666666667777777777666666665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=88.20  E-value=0.79  Score=30.20  Aligned_cols=42  Identities=19%  Similarity=0.076  Sum_probs=35.8

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      +....+.+|.+|.|.|++..++......+...+.......+.
T Consensus       136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778999999999999999999999888888877766665

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=85.93  E-value=0.21  Score=32.45  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           29 GILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        29 ~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ...++.+..+. ..|....+..|..| |.|+++.++.+..+.+...+.......+.+
T Consensus       297 ~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          297 PAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             HHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             HHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344344433 45777888999999 899999999999988887766555544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=85.35  E-value=0.18  Score=32.83  Aligned_cols=44  Identities=11%  Similarity=0.067  Sum_probs=34.4

Q ss_pred             cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM   84 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~   84 (92)
                      ..+....+.+|.+|.|.|++..++......+...+.......+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A          105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34666788999999999999999988888887777666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=84.26  E-value=1.1  Score=30.43  Aligned_cols=45  Identities=16%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             cccchhheecccCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 034511           41 MGAVPWVVMSEIFPINIKGVGGSL---ATLVNWFGAWLVSYTFNFLMT   85 (92)
Q Consensus        41 ~~~i~~~~~~Eifp~~~R~~~~~~---~~~~~~~~~~i~~~~~p~~~~   85 (92)
                      ..|....+.+|.+|.+.|++..+.   ......+...+.......+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  173 (524)
T 2xut_A          126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK  173 (524)
T ss_dssp             THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred             cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346777899999999999876665   555555555555444444444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=82.96  E-value=4.9  Score=26.86  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHH
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWL   75 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i   75 (92)
                      +....+.+|..|.+.|++..++..........+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~  177 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL  177 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence            667789999999999999988876654444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.56
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	95.03
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	90.38

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0031  Score=40.12  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             hhccccchhheecccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q 034511           38 SAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWL-VSYTFNFLMTWSSY   89 (92)
Q Consensus        38 ~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i-~~~~~p~~~~~~~~   89 (92)
                      ..+..+..+.+..|.+|.+.|+++.++.+..+++.+.+ .......+.+..|+
T Consensus       357 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~  409 (447)
T d1pw4a_         357 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  409 (447)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            33456777889999999999999999999988886544 45667777776663

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.014  Score=35.95  Aligned_cols=62  Identities=6%  Similarity=-0.062  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 034511           26 AVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLAT-LVNWFGAWLVSYTFNFLMTWSS   88 (92)
Q Consensus        26 ~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~-~~~~~~~~i~~~~~p~~~~~~~   88 (92)
                      .++...++.+.++. ..+..+.+..|.+|+|.|+++.++.. ..+.+...+.+.....+.|..|
T Consensus       315 ~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         315 VVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            33334444444443 34677788999999999999999865 4566788888888888888766

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.38  Score=29.92  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=36.2

Q ss_pred             cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511           43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS   87 (92)
Q Consensus        43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~   87 (92)
                      +....+.+|.+|.|.|++..++......+...+.........+..
T Consensus       135 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            556678999999999999999998888888777766666655543