Citrus Sinensis ID: 034584

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKTFE
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccEEEEEEccccEEEEccccccccHHHHHHHHHHcccccccccccEEEccEEEEEEEcccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEccEcccEEEEEEccccEEEEccccccccHHHHHHHHHHHHcccccccccEEEccEEEEEEEEEcccEEEEEEccc
Coil and Loop (DISEMBL)
mswqtyvddhlmcdidghhltsAAIVghdgsvwaqssnfpqfkpEEIAAIMKDfeepgslaptglhlggtKYMVIqgepgavirgkktfe
Flexible Loop (DISEMBL)
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQgepgavirgkktfe
Low Complexity Region (SEG)
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKTFE
Disordered region (IsUnstruct)
**WQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFE***SLAPTGLHLGGTKYMVIQGEP***********
Disordered Region (DISOPRED)
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKK***
Disordered Region (DISEMBL)
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKTFE
Disordered Region (DISPRO)
*SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKTFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q9M7N0	131	Profilin-3 OS=Hevea brasi	N/A	no	0.966	0.664	0.931	3e-44
Q941H7	131	Profilin OS=Litchi chinen	N/A	no	0.966	0.664	0.908	7e-43
Q9LEI8	131	Profilin-6 OS=Hevea brasi	N/A	no	0.966	0.664	0.896	1e-42
Q9M7M8	131	Profilin-5 OS=Hevea brasi	N/A	no	0.966	0.664	0.896	1e-42
Q9M7M9	131	Profilin-4 OS=Hevea brasi	N/A	no	0.966	0.664	0.896	2e-42
Q9XF38	131	Profilin OS=Pyrus communi	N/A	no	0.966	0.664	0.908	3e-42
O82572	131	Profilin-1 OS=Ricinus com	N/A	no	0.966	0.664	0.873	7e-41
Q84V37	131	Profilin OS=Chenopodium a	N/A	no	0.966	0.664	0.862	8e-41
Q5VMJ3	131	Profilin LP04 OS=Oryza sa	yes	no	0.966	0.664	0.873	9e-41
P83647	131	Profilin LP04 OS=Oryza sa	N/A	no	0.966	0.664	0.873	9e-41

>sp|Q9M7N0|PROF3_HEVBR Profilin-3 OS=Hevea brasiliensis PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 87/87 (100%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVD+HLMCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.
Hevea brasiliensis (taxid: 3981)

>sp|Q941H7|PROF_LITCN Profilin OS=Litchi chinensis PE=1 SV=1

 Score =  172 bits (435), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 79/87 (90%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Litchi chinensis (taxid: 151069)

>sp|Q9LEI8|PROF6_HEVBR Profilin-6 OS=Hevea brasiliensis PE=1 SV=1

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Hevea brasiliensis (taxid: 3981)

>sp|Q9M7M8|PROF5_HEVBR Profilin-5 OS=Hevea brasiliensis PE=1 SV=1

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Hevea brasiliensis (taxid: 3981)

>sp|Q9M7M9|PROF4_HEVBR Profilin-4 OS=Hevea brasiliensis PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLG TKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGSTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Hevea brasiliensis (taxid: 3981)

>sp|Q9XF38|PROF_PYRCO Profilin OS=Pyrus communis PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/87 (90%), Positives = 83/87 (95%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQ YVDDHLMCDIDGHHLT+AAI+GHDGSVWAQSS FP+FKPEEI AIMKDF+EPGSL
Sbjct: 1  MSWQAYVDDHLMCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGE GAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEGGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Pyrus communis (taxid: 23211)

>sp|O82572|PROF1_RICCO Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMC+I+G+HLTSAAI+G DGSVWAQSS FPQFKPEEI AIM DF EPGSL
Sbjct: 1  MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGL+L GTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLYLSGTKYMVIQGEPGAVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Ricinus communis (taxid: 3988)

>sp|Q84V37|PROF_CHEAL Profilin OS=Chenopodium album PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 83/87 (95%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDI+G+HL+SAAI+GHDG+VWAQS +FPQ KPEE++AIMKDF EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPG VIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGDVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Chenopodium album (taxid: 3559)

>sp|Q5VMJ3|PROFX_ORYSJ Profilin LP04 OS=Oryza sativa subsp. japonica GN=Os06g0152100 PE=2 SV=1

 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQ YVDDHLMC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSL
Sbjct: 1  MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGL LGGTKYMVIQGEPG VIRGKK
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83647|PROFX_ORYSI Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI_020954 PE=1 SV=2

 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 81/87 (93%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQ YVDDHLMC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSL
Sbjct: 1  MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGL LGGTKYMVIQGEPG VIRGKK
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKK 87

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
14423860	131	RecName: Full=Profilin-3; AltName: Full=	0.966	0.664	0.931	1e-42
75305971	131	RecName: Full=Profilin; AltName: Full=Mi	0.966	0.664	0.908	3e-41
224059156	131	predicted protein [Populus trichocarpa]	0.966	0.664	0.896	4e-41
11513601	131	Chain A, Latex Profilin Hevb8 gi|1151360	0.966	0.664	0.896	4e-41
381216472	131	profilin [Quercus suber]	0.966	0.664	0.896	4e-41
14423856	131	RecName: Full=Profilin-6; AltName: Full=	0.966	0.664	0.896	4e-41
381216466	131	profilin [Quercus suber]	0.966	0.664	0.896	4e-41
14423858	131	RecName: Full=Profilin-5; AltName: Full=	0.966	0.664	0.896	6e-41
109391825	131	Ole e 2 allergen [Olea europaea]	0.966	0.664	0.885	6e-41
14423859	131	RecName: Full=Profilin-4; AltName: Full=	0.966	0.664	0.896	9e-41

>gi|14423860|sp|Q9M7N0.1|PROF3_HEVBR RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 gi|6979167|gb|AAF34341.1|AF119365_1 latex profilin Hev b 8 [Hevea brasiliensis]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 87/87 (100%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVD+HLMCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75305971|sp|Q941H7.1|PROF_LITCN RecName: Full=Profilin; AltName: Full=Minor allergen Lit c 1; AltName: Allergen=Lit c 1 gi|15809696|gb|AAL07320.1| profilin [Litchi chinensis]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/87 (90%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059156|ref|XP_002299743.1| predicted protein [Populus trichocarpa] gi|118488316|gb|ABK95977.1| unknown [Populus trichocarpa] gi|222847001|gb|EEE84548.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 86/87 (98%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMC+I+G+HLT+AAI+GHDGSVWAQS+ FPQFKPEEI+AIMKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCEIEGNHLTAAAIIGHDGSVWAQSATFPQFKPEEISAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11513601|pdb|1G5U|A Chain A, Latex Profilin Hevb8 gi|11513602|pdb|1G5U|B Chain B, Latex Profilin Hevb8

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381216472|gb|AFG16926.1| profilin [Quercus suber]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDI+G HLT+AAI+GHDGSVWAQS+ FPQFKPEE+AAI+KDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIEGQHLTAAAIIGHDGSVWAQSATFPQFKPEEVAAIIKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423856|sp|Q9LEI8.1|PROF6_HEVBR RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 gi|8919948|emb|CAB96215.1| profilin [Hevea brasiliensis]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381216466|gb|AFG16923.1| profilin [Quercus suber]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDI+G HLT+AAI+GHDGSVWAQS+ FPQFKPEE+AAI+KDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIEGQHLTAAAIIGHDGSVWAQSATFPQFKPEEVAAIIKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423858|sp|Q9M7M8.1|PROF5_HEVBR RecName: Full=Profilin-5; AltName: Full=Pollen allergen Hev b 8.0203; AltName: Allergen=Hev b 8.0203 gi|6979171|gb|AAF34343.1|AF119367_1 latex profilin Hev b 8 [Hevea brasiliensis]

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109391825|gb|ABG33904.1| Ole e 2 allergen [Olea europaea]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 85/87 (97%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDI+G HLT+AA++GHDGSVWAQS+ FPQFKPEE+AAI+KDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIEGQHLTAAAVIGHDGSVWAQSATFPQFKPEEVAAIIKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423859|sp|Q9M7M9.1|PROF4_HEVBR RecName: Full=Profilin-4; AltName: Full=Pollen allergen Hev b 8.0202; AltName: Allergen=Hev b 8.0202 gi|6979169|gb|AAF34342.1|AF119366_1 latex profilin Hev b 8 [Hevea brasiliensis]

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 84/87 (96%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSL 60

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLG TKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGSTKYMVIQGEPGAVIRGKK 87

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
UNIPROTKB|P83647	131	OsI_020954 "Profilin LP04" [Or	0.966	0.664	0.873	2.3e-39
TAIR|locus:2118309	134	PRF4 "profilin 4" [Arabidopsis	0.966	0.649	0.788	9.2e-36
TAIR|locus:2051945	134	PRF5 "profilin 5" [Arabidopsis	0.966	0.649	0.777	1.2e-35
TAIR|locus:2051965	131	PRF1 "profilin 1" [Arabidopsis	0.966	0.664	0.793	6.5e-35
TAIR|locus:2118324	131	PFN2 "profilin 2" [Arabidopsis	0.966	0.664	0.781	1.5e-33
FB|FBgn0000308	126	chic "chickadee" [Drosophila m	0.9	0.642	0.395	5e-12
DICTYBASE|DDB_G0287125	126	proA "profilin I" [Dictyosteli	0.877	0.626	0.444	5.8e-11
POMBASE|SPAC4A8.15c	127	cdc3 "profilin" [Schizosacchar	0.9	0.637	0.436	4.1e-10
DICTYBASE|DDB_G0286187	124	proB "profilin II" [Dictyostel	0.788	0.572	0.405	6.6e-10
WB|WBGene00003991	126	pfn-3 [Caenorhabditis elegans	0.911	0.650	0.379	2.9e-09

UNIPROTKB|P83647 OsI_020954 "Profilin LP04" [Oryza sativa Indica Group (taxid:39946)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 76/87 (87%), Positives = 81/87 (93%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
             MSWQ YVDDHLMC+IDG+HLT+AAIVGHDGSVWAQS NFPQ+KPEEI  IMKDF+EPGSL
Sbjct:     1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60

Query:    61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
             APTGL LGGTKYMVIQGEPG VIRGKK
Sbjct:    61 APTGLFLGGTKYMVIQGEPGVVIRGKK 87

GO:0009536 "plastid" evidence=IC

TAIR|locus:2118309 PRF4 "profilin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 71/90 (78%), Positives = 79/90 (87%)

Query:     1 MSWQTYVDDHLMCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEP 57
             MSWQTYVD+HLMCD+    GHHLT+AAIVGHDGSVWAQS+NFPQFK +E + IMKDF+EP
Sbjct:     1 MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEP 60

Query:    58 GSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
             G LAPTGL + G KYMVIQGEPGAVIRGKK
Sbjct:    61 GHLAPTGLFMAGAKYMVIQGEPGAVIRGKK 90

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007010 "cytoskeleton organization" evidence=IEA;ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2051945 PRF5 "profilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 70/90 (77%), Positives = 78/90 (86%)

Query:     1 MSWQTYVDDHLMCDI---DGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEP 57
             MSWQ YVD+HLMCD+    GHHLT+AAI+GHDGSVWAQS+NFPQFKP+EI  IMKDF+EP
Sbjct:     1 MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEP 60

Query:    58 GSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
             G LAPTG+ L G KYMVIQGEP AVIRGKK
Sbjct:    61 GHLAPTGMFLAGLKYMVIQGEPNAVIRGKK 90

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007010 "cytoskeleton organization" evidence=IEA;ISS

GO:0015629 "actin cytoskeleton" evidence=IEA;ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA;TAS

GO:0003785 "actin monomer binding" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2051965 PRF1 "profilin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 69/87 (79%), Positives = 77/87 (88%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
             MSWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG L
Sbjct:     1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60

Query:    61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
             APTGL LGG KYMVIQGE GAVIRGKK
Sbjct:    61 APTGLFLGGEKYMVIQGEQGAVIRGKK 87

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA;TAS

GO:0007010 "cytoskeleton organization" evidence=IEA;ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0008154 "actin polymerization or depolymerization" evidence=IDA

TAIR|locus:2118324 PFN2 "profilin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 68/87 (78%), Positives = 74/87 (85%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
             MSWQ+YVDDHLMC+++G+HLT AAI G DGSVWAQSS FPQ KP EIA I KDFEE G L
Sbjct:     1 MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHL 60

Query:    61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
             APTGL LGG KYMV+QGE GAVIRGKK
Sbjct:    61 APTGLFLGGEKYMVVQGEAGAVIRGKK 87

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;TAS

GO:0007010 "cytoskeleton organization" evidence=IEA;ISS

GO:0015629 "actin cytoskeleton" evidence=IEA;ISS

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0008154 "actin polymerization or depolymerization" evidence=IDA

FB|FBgn0000308 chic "chickadee" [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 34/86 (39%), Positives = 50/86 (58%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
             MSWQ YVD+ L+       +T A I GHDG++WAQSS F   K EE++ ++  F++   L
Sbjct:     1 MSWQDYVDNQLLAS---QCVTKACIAGHDGNIWAQSSGFEVTK-EELSKLISGFDQQDGL 56

Query:    61 APTGLHLGGTKYMVIQGEPGAVIRGK 86
                G+ L G +Y+ + G    V+R K
Sbjct:    57 TSNGVTLAGQRYIYLSGTD-RVVRAK 81

GO:0007300 "ovarian nurse cell to oocyte transport" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003779 "actin binding" evidence=IEA;ISS;NAS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=NAS

GO:0008154 "actin polymerization or depolymerization" evidence=NAS

GO:0007420 "brain development" evidence=IGI;IMP

GO:0035193 "larval central nervous system remodeling" evidence=IGI

GO:0007015 "actin filament organization" evidence=IMP;TAS

GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS

GO:0007391 "dorsal closure" evidence=TAS

GO:0030041 "actin filament polymerization" evidence=TAS

GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0030717 "karyosome formation" evidence=IMP

GO:0032507 "maintenance of protein location in cell" evidence=IMP

GO:0007488 "histoblast morphogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

DICTYBASE|DDB_G0287125 proA "profilin I" [Dictyostelium discoideum (taxid:44689)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 40/90 (44%), Positives = 53/90 (58%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNFPQFKPEE--IAAIMKDFEEP 57
             MSWQ YVD+ L     G  L+  AI+G +DG VWA+SS     KPE   IAA+   F+ P
Sbjct:     1 MSWQQYVDEQLT----GAGLSQGAILGANDGGVWAKSSGINITKPEGDGIAAL---FKNP 53

Query:    58 GSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
               +   G  +GG KYM I+G+P ++  GKK
Sbjct:    54 AEVFAKGALIGGVKYMGIKGDPQSIY-GKK 82

GO:0032037 "myosin I heavy chain binding" evidence=IPI

GO:0032009 "early phagosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP;IDA

GO:0019953 "sexual reproduction" evidence=IEP

GO:0050765 "negative regulation of phagocytosis" evidence=TAS

GO:0045010 "actin nucleation" evidence=ISS

GO:0042989 "sequestering of actin monomers" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0006907 "pinocytosis" evidence=TAS

GO:0003779 "actin binding" evidence=IEA;TAS

GO:0030587 "sorocarp development" evidence=IMP

GO:0006928 "cellular component movement" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC4A8.15c cdc3 "profilin" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/87 (43%), Positives = 49/87 (56%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
             MSWQ YVD  L+    G  +  AAIV   G SVWA S+ F    P+EI  +   F++P S
Sbjct:     1 MSWQAYVDTSLLGT--GK-IDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56

Query:    60 LAPTGLHLGGTKYMVIQGEPGAVIRGK 86
             +  TG+ L G KY+ I+ E G  I GK
Sbjct:    57 MFGTGIILAGQKYITIRAE-GRSIYGK 82

GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=IGI;IMP

GO:0003785 "actin monomer binding" evidence=IDA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005937 "mating projection" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IMP

GO:0030479 "actin cortical patch" evidence=TAS

GO:0031097 "medial cortex" evidence=IDA

GO:0032220 "plasma membrane fusion involved in cytogamy" evidence=IMP

GO:0051285 "cell cortex of cell tip" evidence=IDA

GO:0071519 "actin filament bundle assembly involved in cytokinetic actomyosin contractile ring assembly" evidence=NAS

DICTYBASE|DDB_G0286187 proB "profilin II" [Dictyostelium discoideum (taxid:44689)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 32/79 (40%), Positives = 49/79 (62%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
             M+WQ YVD++L+    G    SAA++G  DGSVWA S+ F   + + I A+   F++ G+
Sbjct:     1 MTWQAYVDNNLL----GAGFASAALLGAADGSVWAHSAGFNVAEGKAITAL---FQKDGA 53

Query:    60 LAPTGLHLGGTKYMVIQGE 78
                TG+H+ G KYM I+ +
Sbjct:    54 AFATGIHVAGKKYMAIKSD 72

GO:0032037 "myosin I heavy chain binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP;IDA

GO:0050765 "negative regulation of phagocytosis" evidence=TAS

GO:0045010 "actin nucleation" evidence=ISS

GO:0042989 "sequestering of actin monomers" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0006907 "pinocytosis" evidence=TAS

GO:0003779 "actin binding" evidence=IEA;TAS

GO:0030587 "sorocarp development" evidence=IMP

GO:0006928 "cellular component movement" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00003991 pfn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 33/87 (37%), Positives = 50/87 (57%)

Query:     1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
             MSW   ++++L   I   +++ AAI+G DG+VWA+S NF     EE  A  K F    +L
Sbjct:     1 MSWSDIINNNL---IGSGNVSKAAILGFDGAVWAKSDNF-NISVEEAVAAGKAFTSLDAL 56

Query:    61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
               TGL L G K++V+  +   +I GK+
Sbjct:    57 LGTGLRLEGQKFLVLNADNDRII-GKQ 82

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0055120 "striated muscle dense body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83647	PROFX_ORYSI	No assigned EC number	0.8735	0.9666	0.6641	N/A	no
P25816	PROF_BETPN	No assigned EC number	0.8314	0.9666	0.6541	N/A	no
Q41344	PROF1_SOLLC	No assigned EC number	0.8314	0.9666	0.6541	N/A	no
Q64LH2	PROF2_AMBAR	No assigned EC number	0.8160	0.9666	0.6641	N/A	no
Q64LH1	PROF1_AMBAR	No assigned EC number	0.8160	0.9666	0.6641	N/A	no
O04725	PROF_CYNDA	No assigned EC number	0.8390	0.9666	0.6641	N/A	no
P52184	PROF1_HORVU	No assigned EC number	0.8505	0.9666	0.6641	N/A	no
O24170	ALL2B_OLEEU	No assigned EC number	0.8222	0.9666	0.6492	N/A	no
Q9LEI8	PROF6_HEVBR	No assigned EC number	0.8965	0.9666	0.6641	N/A	no
O65812	PROF1_HEVBR	No assigned EC number	0.8390	0.9666	0.6641	N/A	no
P49234	PROF3_WHEAT	No assigned EC number	0.8390	0.9666	0.6214	N/A	no
P49233	PROF2_WHEAT	No assigned EC number	0.8505	0.9666	0.6170	N/A	no
Q9M7N0	PROF3_HEVBR	No assigned EC number	0.9310	0.9666	0.6641	N/A	no
Q93YG7	PROF2_SOLLC	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
P35083	PROF3_MAIZE	No assigned EC number	0.8160	0.9666	0.6641	N/A	no
P35081	PROF1_MAIZE	No assigned EC number	0.8620	0.9666	0.6641	N/A	no
Q9XF42	PROF3_MALDO	No assigned EC number	0.8275	0.9666	0.6641	N/A	no
Q9XF40	PROF1_MALDO	No assigned EC number	0.8850	0.9666	0.6641	N/A	no
Q9XF41	PROF2_MALDO	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
Q9SNW7	PROF1_LILLO	No assigned EC number	0.8390	0.9666	0.6641	N/A	no
Q8GT39	PROF_PRUPE	No assigned EC number	0.8045	0.9666	0.6641	N/A	no
Q8GSL5	PROF_PRUDU	No assigned EC number	0.8160	0.9666	0.6641	N/A	no
Q5FX67	PROF_CUCME	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
O24650	PROF2_PHLPR	No assigned EC number	0.8045	0.9666	0.6641	N/A	no
Q94JN2	PROF_ANACO	No assigned EC number	0.8390	0.9666	0.6641	N/A	no
Q94JN3	PROF_MUSAC	No assigned EC number	0.8850	0.9666	0.6641	N/A	no
P41372	PROF1_TOBAC	No assigned EC number	0.8222	0.9666	0.6492	N/A	no
Q93YI9	PROF_CAPAN	No assigned EC number	0.8390	0.9666	0.6641	N/A	no
O24169	ALL2A_OLEEU	No assigned EC number	0.8222	0.9666	0.6492	N/A	no
Q9FR39	PROF5_MAIZE	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
O24171	ALL2C_OLEEU	No assigned EC number	0.8222	0.9666	0.6492	N/A	no
Q9M7M9	PROF4_HEVBR	No assigned EC number	0.8965	0.9666	0.6641	N/A	no
Q9M7M8	PROF5_HEVBR	No assigned EC number	0.8965	0.9666	0.6641	N/A	no
Q9XF39	PROF_PRUAV	No assigned EC number	0.8045	0.9666	0.6641	N/A	no
Q9XF38	PROF_PYRCO	No assigned EC number	0.9080	0.9666	0.6641	N/A	no
P35079	PROF1_PHLPR	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
Q941H7	PROF_LITCN	No assigned EC number	0.9080	0.9666	0.6641	N/A	no
Q9STB6	PROF2_HEVBR	No assigned EC number	0.8045	0.9666	0.6641	N/A	no
P0C0Y3	PROF_FRAAN	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
P49232	PROF1_WHEAT	No assigned EC number	0.8505	0.9666	0.6304	N/A	no
Q84V37	PROF_CHEAL	No assigned EC number	0.8620	0.9666	0.6641	N/A	no
P49231	PROF1_PHAVU	No assigned EC number	0.7931	0.9666	0.6641	N/A	no
Q5VMJ3	PROFX_ORYSJ	No assigned EC number	0.8735	0.9666	0.6641	yes	no
O82572	PROF1_RICCO	No assigned EC number	0.8735	0.9666	0.6641	N/A	no
O22655	PROF4_MAIZE	No assigned EC number	0.7816	0.9666	0.6641	N/A	no
Q9SQI9	PROF_ARAHY	No assigned EC number	0.8160	0.9666	0.6641	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam00235	121	pfam00235, Profilin, Profilin	4e-45
cd00148	127	cd00148, PROF, Profilin binds actin monomers, memb	9e-34
smart00392	129	smart00392, PROF, Profilin	2e-32
PTZ00316	150	PTZ00316, PTZ00316, profilin; Provisional	1e-10

>gnl|CDD|215811 pfam00235, Profilin, Profilin

 Score =  140 bits (356), Expect = 4e-45
 Identities = 51/86 (59%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQ YVD +L+    G  L  AAI+GHDGSVWA S  FP   PEEI AI   F++PGSLA
Sbjct: 1  SWQAYVDSNLVAT--GK-LDKAAIIGHDGSVWAASPGFPALSPEEIKAIAAAFKDPGSLA 57

Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
           TGL LGG KYMVI+ + G  I GKK
Sbjct: 58 ATGLTLGGQKYMVIRADDG-SIYGKK 82

Length = 121

>gnl|CDD|238085 cd00148, PROF, Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline

 Score =  112 bits (282), Expect = 9e-34
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 5/87 (5%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHD-GSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          SWQ YVDD+L+       + SAAIVGHD GSVWA S+      PEE+  ++  F++P  +
Sbjct: 1  SWQAYVDDNLLGTG---KVDSAAIVGHDDGSVWAASAGGFNLTPEEVGTLVAGFKDPDGV 57

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
            TGL LGG KYMVI+ +    I GKK
Sbjct: 58 FSTGLTLGGQKYMVIRADDR-SIYGKK 83

Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway. Length = 127

>gnl|CDD|214646 smart00392, PROF, Profilin

 Score =  108 bits (273), Expect = 2e-32
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSS--NFPQFKPEEIAAIMKDFEEPG 58
          MSWQ YVD+ L   +    + +AAI G DGSVWA S+  NF +  PEEIAAI   F    
Sbjct: 1  MSWQAYVDNLL---VGSGCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLA 57

Query: 59 SLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
          ++   GL LGG KYMVI+ +    I GKK
Sbjct: 58 AVFSNGLTLGGQKYMVIRAD-DRSIMGKK 85

Binds actin monomers, membrane polyphosphoinositides and poly-L-proline. Length = 129

>gnl|CDD|140337 PTZ00316, PTZ00316, profilin; Provisional

 Score = 53.8 bits (129), Expect = 1e-10
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 8/83 (9%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNF-PQFKPEEIAAIMKDFEEPG 58
          MSWQ YVDD L   I   ++ SAAIVG  DGS WA   ++ PQ  PEE+A I+K      
Sbjct: 1  MSWQAYVDDSL---IGSGNMHSAAIVGLADGSYWAYGGSYIPQ--PEEVAHILKCLGNFS 55

Query: 59 SLAPTGLHLGGTKYMVIQ-GEPG 80
           +  +G+ + G K+  +Q G  G
Sbjct: 56 LVQSSGVTIYGVKFFGLQSGTEG 78

Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PTZ00316	150	profilin; Provisional	100.0
smart00392	129	PROF Profilin. Binds actin monomers, membrane poly	100.0
cd00148	127	PROF Profilin binds actin monomers, membrane polyp	100.0
KOG1755	128	consensus Profilin [Cytoskeleton]	99.97
PF00235	121	Profilin: Profilin; InterPro: IPR002097 Profilin i	99.96

>PTZ00316 profilin; Provisional

Probab=100.00  E-value=3.1e-36  Score=202.89  Aligned_cols=86  Identities=38%  Similarity=0.566  Sum_probs=81.2

Q ss_pred             CchhhhhhhhccccCCCCccceEEEEec-CCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584            1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP   79 (90)
Q Consensus         1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~-dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~   79 (90)
                      ||||+|||++|++   +|+|++|||+|+ ||++||+|++| +++|+|+++|+++|+||+.++++||+|+|+||+++|+++
T Consensus         1 MSWQaYVD~~L~g---sg~v~kAAIiG~~DGsvWA~S~gF-~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr~~~   76 (150)
T PTZ00316          1 MSWQAYVDDSLIG---SGNMHSAAIVGLADGSYWAYGGSY-IPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQSGT   76 (150)
T ss_pred             CCHHHHHHhhhhc---cCCcceEEEEecCCCCEeecCCCC-ccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEEecc
Confidence            9999999999999   999999999997 89999999999 999999999999999999999999999999999999821


Q ss_pred             ---CceEEEecCCC
Q 034584           80 ---GAVIRGKKTFE   90 (90)
Q Consensus        80 ---~~~iygkkg~~   90 (90)
                         +++||||||.+
T Consensus        77 d~d~~~i~gKKg~~   90 (150)
T PTZ00316         77 EGDMKYIFFKKGAA   90 (150)
T ss_pred             CCCcceEEEecCCC
Confidence               58999999964

>smart00392 PROF Profilin

Probab=100.00  E-value=2e-33  Score=185.03  Aligned_cols=86  Identities=49%  Similarity=0.769  Sum_probs=81.6

Q ss_pred             CchhhhhhhhccccCCCCccceEEEEecCCCEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584            1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE   78 (90)
Q Consensus         1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d   78 (90)
                      ||||+|||++|++   ++++++|||+++||++||+|++  |..++|+|+++|+++|+||+.++++||+|+|+||+++|+|
T Consensus         1 MsWq~yvd~~l~~---~g~~~~AaI~g~dGsvWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~~~~~d   77 (129)
T smart00392        1 MSWQAYVDNLLVG---SGCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNGLTLGGQKYMVIRAD   77 (129)
T ss_pred             CChHHHHHHHhhc---cCCCcEEEEEeCCCCeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCCeEECCeEEEEEEec
Confidence            9999999999999   9999999999999999999999  7458999999999999999888999999999999999999


Q ss_pred             CCceEEEecCCC
Q 034584           79 PGAVIRGKKTFE   90 (90)
Q Consensus        79 ~~~~iygkkg~~   90 (90)
                       ++++|||||.+
T Consensus        78 -~~~i~~kk~~~   88 (129)
T smart00392       78 -DRSIMGKKGAG   88 (129)
T ss_pred             -CcEEEeecCCc
Confidence             99999999864

Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.

>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline

Probab=100.00  E-value=6.1e-33  Score=182.55  Aligned_cols=84  Identities=51%  Similarity=0.908  Sum_probs=80.9

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecC-CCEEEecCC-CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHD-GSVWAQSSN-FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP   79 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~d-G~vwA~s~~-f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~   79 (90)
                      |||+|||++|++   +++|++|||+|+| |++||+|++ | +++|+|+++|+++|+||+.++++||+|+|+||+++|+| 
T Consensus         1 sWq~yvd~~L~~---~g~~~~aAI~g~d~g~vwA~s~~~f-~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d-   75 (127)
T cd00148           1 SWQAYVDDNLLG---TGKVDSAAIVGHDDGSVWAASAGGF-NLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRAD-   75 (127)
T ss_pred             ChHHHHHHHHhh---cCCcCEEEEEecCCCCeEEecCCCC-ccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecC-
Confidence            899999999999   9999999999998 899999999 9 99999999999999999999999999999999999999 


Q ss_pred             CceEEEecCCC
Q 034584           80 GAVIRGKKTFE   90 (90)
Q Consensus        80 ~~~iygkkg~~   90 (90)
                      +++||||+|.+
T Consensus        76 ~~~i~~kk~~~   86 (127)
T cd00148          76 DRSIYGKKGAG   86 (127)
T ss_pred             ccEEEeeeCCC
Confidence            89999999863

Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.

>KOG1755 consensus Profilin [Cytoskeleton]

Probab=99.97  E-value=2.5e-30  Score=170.04  Aligned_cols=85  Identities=62%  Similarity=1.052  Sum_probs=81.2

Q ss_pred             CchhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584            1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP   79 (90)
Q Consensus         1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~   79 (90)
                      ||||+|||++|++   +++|++|||+|.+| +|||+|++| +++|+|+..+++.|+|+..++.+|++|+|+||+++|.|.
T Consensus         1 ~~Wq~Yvd~~l~~---~~~v~~AAIvg~~~~SVWA~S~~f-~~~~~e~~~~v~~F~d~~~~~~~Gl~L~Gqkylv~~ge~   76 (128)
T KOG1755|consen    1 MSWQAYVDDHLLG---TGHVTRAAIVGYDGGSVWAASAGF-NVKPSEIPAIVAGFKDPGGLAGTGLTLGGQKYLVVRGEE   76 (128)
T ss_pred             CCHHHHHHHhhcc---ccccceeeEEecCCCeeEEecCCC-cccHHHHHHHHhcccCcccccccceeecccEEEEEeccc
Confidence            9999999999999   99999999999966 999999999 999999999999999999999999999999999999997


Q ss_pred             CceEEEecCC
Q 034584           80 GAVIRGKKTF   89 (90)
Q Consensus        80 ~~~iygkkg~   89 (90)
                      ++++|||++-
T Consensus        77 ~~~~~gk~~~   86 (128)
T KOG1755|consen   77 GRVIRGKEGT   86 (128)
T ss_pred             ceEEecccCC
Confidence            7889999863

>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin)

Probab=99.96  E-value=5.7e-30  Score=165.75  Aligned_cols=84  Identities=45%  Similarity=0.862  Sum_probs=79.8

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA   81 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~   81 (90)
                      |||+|||++|++   ++++++|||+|.||++||++++|++++|+|+++|+++|++|+.++.+||+|+|+||+++|+| ++
T Consensus         1 sW~~~i~~~L~~---~~~~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~d-~~   76 (121)
T PF00235_consen    1 SWQDYIDEQLIG---TGNITKAAIIGSDGSVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRAD-DN   76 (121)
T ss_dssp             THHHHHHTHHHT---TSSESEEEEEETTSSEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEEE-TT
T ss_pred             ChhHHHHHHhcc---cCcEeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEecC-Cc
Confidence            899999999999   89999999999999999999999889999999999999999888899999999999999999 99


Q ss_pred             eEEEecCC
Q 034584           82 VIRGKKTF   89 (90)
Q Consensus        82 ~iygkkg~   89 (90)
                      +||||+|.
T Consensus        77 ~i~~k~~~   84 (121)
T PF00235_consen   77 SIYGKKGK   84 (121)
T ss_dssp             EEEEEETT
T ss_pred             eEEeeCCC
Confidence            99999985

It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1g5u_A	131	Latex Profilin Hevb8 Length = 131		7e-44
1cqa_A	133	Birch Pollen Profilin Length = 133		8e-39
1a0k_A	131	Profilin I From Arabidopsis Thaliana Length = 131		1e-37
3nul_A	130	Profilin I From Arabidopsis Thaliana Length = 130		2e-35
1f2k_A	125	Crystal Structure Of Acanthamoeba Castellanii Profi		4e-11
3d9y_A	127	Crystal Structure Of Profilin From Schizosaccharomy		2e-09
1prq_A	125	Acanthamoeba Castellanii Profilin Ia Length = 125		2e-06
1acf_A	125	Acanthamoeba Castellanii Profilin Ib Length = 125		2e-06
1ypr_A	125	Saccharomyces Cerevisiae (Yeast) Profilin Length =		8e-06

>pdb|1G5U|A Chain A, Latex Profilin Hevb8 Length = 131

Iteration: 1
 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 78/87 (89%), Positives = 85/87 (97%)
Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1  MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGLHLGGTKYMVIQGEPGAVIRGKK
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87

>pdb|1CQA|A Chain A, Birch Pollen Profilin Length = 133

Iteration: 1
 Score =  155 bits (391), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 79/89 (88%), Gaps = 2/89 (2%)
Query: 1  MSWQTYVDDHLMCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPG 58
          MSWQTYVD+HLMCDIDG    L ++AIVGHDGSVWAQSS+FPQFKP+EI  IMKDFEEPG
Sbjct: 1  MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 59 SLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
           LAPTGLHLGG KYMVIQGE GAVIRGKK
Sbjct: 61 HLAPTGLHLGGIKYMVIQGEAGAVIRGKK 89

>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana Length = 131

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 77/87 (88%)
Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          MSWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG L
Sbjct: 1  MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
          APTGL LGG KYMVIQGE GAVIRGKK
Sbjct: 61 APTGLFLGGEKYMVIQGEQGAVIRGKK 87

>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana Length = 130

Iteration: 1
 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 74/86 (86%)
Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQ+YVDDHL CD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG LA
Sbjct: 1  SWQSYVDDHLXCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
          PTGL LGG KY VIQGE GAVIRGKK
Sbjct: 61 PTGLFLGGEKYXVIQGEQGAVIRGKK 86

>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii, Cubic Crystal Form Length = 125

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQTYVD +L+       +T AAI+GHDG+ WA S+ F    P   AA+   F++  ++ 
Sbjct: 1  SWQTYVDTNLVGT---GAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
            G  L GT+Y+ I+ +  +V  GKK
Sbjct: 57 SNGFELAGTRYVTIRADDRSVY-GKK 81

>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces Pombe Length = 127

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
          MSWQ YVD  L+       +  AAIV   G SVWA S+ F    P+EI  +   F++P S
Sbjct: 1  MSWQAYVDTSLL---GTGKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56
Query: 60 LAPTGLHLGGTKYMVIQGEPGAVIRGK 86
          +  TG+ L G KY+ I+ E G  I GK
Sbjct: 57 MFGTGIILAGQKYITIRAE-GRSIYGK 82

>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia Length = 125

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQTYVD +L   +    +T AAI+G DG+ WA S+ F    P +   +   F     + 
Sbjct: 1  SWQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
           +G  L G  Y+ ++ +  + I GKK
Sbjct: 57 ASGFDLAGVHYVTLRADDRS-IYGKK 81

>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib Length = 125

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQTYVD +L+       +T AAI+G DG+ WA S+ F    P +   +   F    ++ 
Sbjct: 1  SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
            G  L G  Y+ ++ +  + I GKK
Sbjct: 57 AGGFDLAGVHYVTLRADDRS-IYGKK 81

>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          SWQ Y D+     I    +  A I    G +VWA S      +P EI  I++ F+ P  L
Sbjct: 1  SWQAYTDNL----IGTGKVDKAVIYSRAGDAVWATSGGLS-LQPNEIGEIVQGFDNPAGL 55
Query: 61 APTGLHLGGTKYMVIQGEPGAV 82
             GLH+ G K+M+++ +  ++
Sbjct: 56 QSNGLHIQGQKFMLLRADDRSI 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3nul_A	130	Profilin I; cytoskeleton, actin binding protein; H	2e-43
3d9y_A	127	Profilin; yeast, actin-binding, cytoskeleton, prot	3e-32
1acf_A	125	Profilin I; protein binding, actin-binding protein	9e-32
1ypr_A	125	Profilin; actin-binding protein, cytoskeleton; 2.3	2e-30
3nec_A	166	Profilin, inflammatory profilin; actin-binding, ac	2e-26
2v8f_A	140	Profilin-2, profilin IIA; alternative splicing, pr	7e-26
2pbd_P	139	Profilin-1, profilin I; ternary complex, profilin,	2e-24
2jkg_A	179	Profilin; proline-rich ligand, protein-binding, ma	3e-22
3leq_A	126	Uncharacterized protein CVNB5; PSI, MCSG, structur	6e-04

>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A Length = 130

 Score =  136 bits (343), Expect = 2e-43
 Identities = 68/86 (79%), Positives = 76/86 (88%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG LA
Sbjct: 1  SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60

Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
          PTGL LGG KYMVIQGE GAVIRGKK
Sbjct: 61 PTGLFLGGEKYMVIQGEQGAVIRGKK 86

>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} PDB: 3dav_A Length = 127

 Score =  108 bits (270), Expect = 3e-32
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 1  MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
          MSWQ YVD  L+       +  AAIV   G SVWA S+ F    P+EI  +   F++P S
Sbjct: 1  MSWQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56

Query: 60 LAPTGLHLGGTKYMVIQGEPGAVIRGKK 87
          +  TG+ L G KY+ I+ E    I GK 
Sbjct: 57 MFGTGIILAGQKYITIRAEGR-SIYGKL 83

>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A Length = 125

 Score =  106 bits (266), Expect = 9e-32
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQTYVD +L+       +T AAI+G DG+ WA S+ F    P +   +   F    ++ 
Sbjct: 1  SWQTYVDTNLV---GTGAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56

Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGK 86
            G  L G  Y+ ++ +  ++   K
Sbjct: 57 AGGFDLAGVHYVTLRADDRSIYGKK 81

>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A Length = 125

 Score =  103 bits (257), Expect = 2e-30
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          SWQ Y D+     I    +  A I    G +VWA S      +P EI  I++ F+ P  L
Sbjct: 1  SWQAYTDNL----IGTGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGL 55

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
             GLH+ G K+M+++ +    I G+ 
Sbjct: 56 QSNGLHIQGQKFMLLRADDR-SIYGRH 81

>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii} Length = 166

 Score = 94.2 bits (233), Expect = 2e-26
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 28/115 (24%)

Query: 2   SWQTYVDDHL----------MCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEE--IAA 49
            W   V + L          + + +   + +AA    DG       +  +    E   A 
Sbjct: 6   DWDPVVKEWLVDTGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNAC 65

Query: 50  IMKDFEEPGSL--------APTGLHLGGTKYMVIQGEPG--------AVIRGKKT 88
                 E  ++        AP G+ +GG KY V++ E G         +    ++
Sbjct: 66  GKVSINEASTIKAAVDDGSAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARS 120

>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A* Length = 140

 Score = 92.1 bits (228), Expect = 7e-26
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSS--NFPQFKPEEIAAIMKDFEEP 57
           WQ+YVD+ +           AAIVG+     VWA ++   F    P EI  I+    + 
Sbjct: 3  GWQSYVDNLMCD----GCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGK--DR 56

Query: 58 GSLAPTGLHLGGTKYMVIQ------GEPGAVIRGKKT 88
                GL LG  K  VI+      G+    IR K  
Sbjct: 57 EGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQ 93

>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P* Length = 139

 Score = 88.3 bits (218), Expect = 2e-24
 Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 16/97 (16%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSS--NFPQFKPEEIAAIMKDFEEP 57
           W  Y+D+ LM D        AAIVG+    SVWA      F    P E+  ++    + 
Sbjct: 2  GWNAYIDN-LMAD---GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGK--DR 55

Query: 58 GSLAPTGLHLGGTKYMVIQ------GEPGAVIRGKKT 88
           S    GL LGG K  VI+      GE    +R K T
Sbjct: 56 SSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKST 92

>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A Length = 179

 Score = 83.9 bits (206), Expect = 3e-22
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 39/123 (31%)

Query: 2   SWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSSNFPQFKP---------------- 44
           SW +Y++D L   +  + ++ A +    DG V+A  +   +  P                
Sbjct: 6   SWDSYLNDRL---LATNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIE 62

Query: 45  ---EEIAAIMKDFEEPGSL--------APTGLHLGGTKYMVIQGEPG--------AVIRG 85
              E      K   E  ++        AP G+ LGGTKY  I  E           V   
Sbjct: 63  VEDENGTKTTKTINEGQTILVVFNEGYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATC 122

Query: 86  KKT 88
            K 
Sbjct: 123 AKL 125

>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis} Length = 126

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 9  DHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLG 68
            L+  +    +  A ++  DG V ++S+ F +   E +AA                  G
Sbjct: 10 TGLVDRVAE--VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRG 67

Query: 69 GTKYMVIQGEPGAVI 83
            +  +I+   G +I
Sbjct: 68 PVRQALIEMGKGYLI 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3d9y_A	127	Profilin; yeast, actin-binding, cytoskeleton, prot	100.0
3nul_A	130	Profilin I; cytoskeleton, actin binding protein; H	100.0
1acf_A	125	Profilin I; protein binding, actin-binding protein	100.0
1ypr_A	125	Profilin; actin-binding protein, cytoskeleton; 2.3	100.0
2v8f_A	140	Profilin-2, profilin IIA; alternative splicing, pr	99.97
3nec_A	166	Profilin, inflammatory profilin; actin-binding, ac	99.96
2jkg_A	179	Profilin; proline-rich ligand, protein-binding, ma	99.96
2pbd_P	139	Profilin-1, profilin I; ternary complex, profilin,	99.96
3leq_A	126	Uncharacterized protein CVNB5; PSI, MCSG, structur	84.0

>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A

Probab=100.00  E-value=6.7e-37  Score=200.44  Aligned_cols=85  Identities=45%  Similarity=0.772  Sum_probs=81.2

Q ss_pred             CchhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584            1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP   79 (90)
Q Consensus         1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~   79 (90)
                      ||||+|||++|++   +++|++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| 
T Consensus         1 MSWq~Yvd~~L~~---~~~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d-   75 (127)
T 3d9y_A            1 MSWQAYVDTSLLG---TGKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-   75 (127)
T ss_dssp             -CHHHHHHTTTGG---GSSCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-
T ss_pred             CCHHHHHHHhhcc---cCceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-
Confidence            9999999999999   99999999999999 799999999 99999999999999999988899999999999999999 


Q ss_pred             CceEEEecCCC
Q 034584           80 GAVIRGKKTFE   90 (90)
Q Consensus        80 ~~~iygkkg~~   90 (90)
                      +++||||||.+
T Consensus        76 ~~~i~~kkg~~   86 (127)
T 3d9y_A           76 GRSIYGKLQKE   86 (127)
T ss_dssp             SSEEEEEETTE
T ss_pred             cceEEEEcCCc
Confidence            99999999864

>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A

Probab=100.00  E-value=7.8e-35  Score=191.44  Aligned_cols=88  Identities=76%  Similarity=1.243  Sum_probs=82.7

Q ss_pred             chhhhhhhhccccCCCC-ccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 034584            2 SWQTYVDDHLMCDIDGH-HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG   80 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~-~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~   80 (90)
                      |||+|||++|+++. +| +|++|||+|+||++||+|++|++++|+|++.|+++|+||+.++++||+|+|+||+++|+|++
T Consensus         1 SWq~YVd~~L~~~~-~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~   79 (130)
T 3nul_A            1 SWQSYVDDHLMCDV-EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQG   79 (130)
T ss_dssp             CHHHHHHHTTSCCB-TTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETT
T ss_pred             CHHHHHHhhhcccc-cCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCC
Confidence            89999999999865 55 99999999999999999999999999999999999999999999999999999999999878


Q ss_pred             ceEEEecCCC
Q 034584           81 AVIRGKKTFE   90 (90)
Q Consensus        81 ~~iygkkg~~   90 (90)
                      ++||||||.+
T Consensus        80 ~~i~~kkg~~   89 (130)
T 3nul_A           80 AVIRGKKGPG   89 (130)
T ss_dssp             TEEEEEETTE
T ss_pred             cEEEEecCCC
Confidence            8999999863

>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A

Probab=100.00  E-value=3.8e-34  Score=186.91  Aligned_cols=84  Identities=35%  Similarity=0.652  Sum_probs=80.9

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA   81 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~   81 (90)
                      |||+|||++|++   +|++++|||+|+||++||+|++| +++|+|++.|+++|+||..++++||+|+|+||+++|.| ++
T Consensus         1 SWq~yvd~~L~~---~g~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~   75 (125)
T 1acf_A            1 SWQTYVDTNLVG---TGAVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR   75 (125)
T ss_dssp             CHHHHHHTTTGG---GTSCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred             ChHHHHHhhhhh---CCCcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-Cc
Confidence            899999988999   89999999999999999999999 99999999999999999888899999999999999999 99


Q ss_pred             eEEEecCCC
Q 034584           82 VIRGKKTFE   90 (90)
Q Consensus        82 ~iygkkg~~   90 (90)
                      +||||||.+
T Consensus        76 ~i~~kk~~~   84 (125)
T 1acf_A           76 SIYGKKGSS   84 (125)
T ss_dssp             EEEEEETTE
T ss_pred             EEEeecCCC
Confidence            999999863

>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A

Probab=100.00  E-value=4.8e-34  Score=186.61  Aligned_cols=83  Identities=35%  Similarity=0.754  Sum_probs=79.8

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG   80 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~   80 (90)
                      |||+|||+ |++   +|++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| +
T Consensus         1 SWq~yvd~-L~~---~g~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~   74 (125)
T 1ypr_A            1 SWQAYTDN-LIG---TGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D   74 (125)
T ss_dssp             CHHHHHHH-HHH---TSSCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred             ChHHHHHH-Hhc---CCCccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-C
Confidence            89999996 999   99999999999999 999999999 99999999999999999888899999999999999999 9


Q ss_pred             ceEEEecCCC
Q 034584           81 AVIRGKKTFE   90 (90)
Q Consensus        81 ~~iygkkg~~   90 (90)
                      ++||||||++
T Consensus        75 ~~i~~kk~~~   84 (125)
T 1ypr_A           75 RSIYGRHDAE   84 (125)
T ss_dssp             SEEEEEETTE
T ss_pred             cEEEEecCCc
Confidence            9999999863

>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*

Probab=99.97  E-value=6.6e-32  Score=179.62  Aligned_cols=84  Identities=38%  Similarity=0.634  Sum_probs=78.3

Q ss_pred             Cc-hhhhhhhhccccCCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEE
Q 034584            1 MS-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVI   75 (90)
Q Consensus         1 MS-Wq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~l   75 (90)
                      || ||+|||+ |++   +++|++|||+|+||  ++||+|++  |++++|+|++.|+ + +||+.++++||+|+|+||+++
T Consensus         1 MS~Wq~yvd~-L~~---~g~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~i   74 (140)
T 2v8f_A            1 MAGWQSYVDN-LMC---DGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVI   74 (140)
T ss_dssp             -CTTHHHHHH-HHT---TSCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEE
T ss_pred             CchHHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEE
Confidence            99 9999996 999   99999999999999  99999999  9889999999999 7 999888999999999999999


Q ss_pred             Ee----CCCce--EEEecCCC
Q 034584           76 QG----EPGAV--IRGKKTFE   90 (90)
Q Consensus        76 r~----d~~~~--iygkkg~~   90 (90)
                      |+    |++++  ||||||.+
T Consensus        75 r~~l~~d~~~~~di~~kk~~~   95 (140)
T 2v8f_A           75 RDSLYVDGDCTMDIRTKSQGG   95 (140)
T ss_dssp             EEETTSTTTCEEEEEECCCSS
T ss_pred             ecccccCCCceEEEEEecCCC
Confidence            99    76788  99999864

>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}

Probab=99.96  E-value=1.4e-30  Score=177.45  Aligned_cols=84  Identities=26%  Similarity=0.453  Sum_probs=76.3

Q ss_pred             Cc-hhhhhhhhccccCCCCccceEEEEe-cCCCEEEecCCC------------------------CCCCHHHHHHHHHhc
Q 034584            1 MS-WQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNF------------------------PQFKPEEIAAIMKDF   54 (90)
Q Consensus         1 MS-Wq~yvd~~Li~~~~t~~v~~aaI~g-~dG~vwA~s~~f------------------------~~~~~~E~~~l~~~f   54 (90)
                      || ||+|||++|++   +++|++|||+| +||++||+|++|                        ++++|+|+++|+++|
T Consensus         4 MS~Wq~YVd~~L~~---~g~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f   80 (166)
T 3nec_A            4 MSDWDPVVKEWLVD---TGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAV   80 (166)
T ss_dssp             -CCCHHHHHHHHTT---TSSCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred             ccHHHHHHHHHhhc---cCceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHh
Confidence            99 99999999999   99999999999 799999999999                        256999999999999


Q ss_pred             CCCCCCCccceEEcCEEEEEEEeCCC--------ceEEEecCC
Q 034584           55 EEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKTF   89 (90)
Q Consensus        55 ~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~   89 (90)
                      ++.  ++++||+|+|+||+++|+|++        ++|||||++
T Consensus        81 ~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~  121 (166)
T 3nec_A           81 DDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSK  121 (166)
T ss_dssp             HHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             hcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCC
Confidence            884  578999999999999999933        789999986

>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A

Probab=99.96  E-value=1.3e-30  Score=178.94  Aligned_cols=84  Identities=32%  Similarity=0.563  Sum_probs=78.6

Q ss_pred             CchhhhhhhhccccCCCCccceEEEEec-CCCEEEecC------------------CCC-CC----------CHHHHHHH
Q 034584            1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSS------------------NFP-QF----------KPEEIAAI   50 (90)
Q Consensus         1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~-dG~vwA~s~------------------~f~-~~----------~~~E~~~l   50 (90)
                      ||||+|||++|++   ||+|++|||+|+ ||++||+|+                  +|+ ++          +|+|+++|
T Consensus         5 mSWq~YVd~~Ll~---tG~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I   81 (179)
T 2jkg_A            5 YSWDSYLNDRLLA---TNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTI   81 (179)
T ss_dssp             CCHHHHHHHHTGG---GSSCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHH
T ss_pred             ccHHHHHHHhhhh---cCCEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHH
Confidence            9999999999999   999999999999 999999999                  884 47          89999999


Q ss_pred             HHhcCCCCCCCccceEEcCEEEEEEEeCCC--------ceEEEecCC
Q 034584           51 MKDFEEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKTF   89 (90)
Q Consensus        51 ~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~   89 (90)
                      +++|++  .++++||+|+|+||+++|.|++        ++||||||+
T Consensus        82 ~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgk  126 (179)
T 2jkg_A           82 LVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLK  126 (179)
T ss_dssp             HHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             HHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCC
Confidence            999987  5789999999999999999977        899999986

>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*

Probab=99.96  E-value=3.5e-29  Score=166.16  Aligned_cols=83  Identities=35%  Similarity=0.606  Sum_probs=77.5

Q ss_pred             c-hhhhhhhhccccCCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEE
Q 034584            2 S-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQ   76 (90)
Q Consensus         2 S-Wq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr   76 (90)
                      | ||+|||+ |++   +++|++|||+|+||  ++||+|++  |.+++|+|++.|+ + +||+.++++||+|+|+||+++|
T Consensus         1 s~Wq~Yvd~-L~~---~g~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir   74 (139)
T 2pbd_P            1 AGWNAYIDN-LMA---DGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIR   74 (139)
T ss_dssp             CCSHHHHHH-HHT---TSCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEE
T ss_pred             CchHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEe
Confidence            5 9999996 999   89999999999999  99999999  9889999999999 6 8888889999999999999999


Q ss_pred             e----CCCceE--EEecCCC
Q 034584           77 G----EPGAVI--RGKKTFE   90 (90)
Q Consensus        77 ~----d~~~~i--ygkkg~~   90 (90)
                      +    |++++|  |+||+.+
T Consensus        75 ~~~~~d~~~~id~~~kk~~~   94 (139)
T 2pbd_P           75 DSLLQDGEFSMDLRTKSTGG   94 (139)
T ss_dssp             EETTCTTTCEEEEEECCSTT
T ss_pred             cccccCCCcEEeeeeccCCC
Confidence            9    767899  9999864

>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}

Probab=84.00  E-value=1.9  Score=27.03  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584           17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE   78 (90)
Q Consensus        17 t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d   78 (90)
                      +..+..|++++.||=+-+++.+.+...++-+..+...+-.-......=+..+..+-++++.+
T Consensus        16 v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~   77 (126)
T 3leq_A           16 VAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG   77 (126)
T ss_dssp             CTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS
T ss_pred             CCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC
Confidence            56899999999999998987666112445555555544221111122234566677777777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d3nula_	130	d.110.1.1 (A:) Profilin (actin-binding protein) {M	4e-49
d1acfa_	125	d.110.1.1 (A:) Profilin (actin-binding protein) {A	5e-38
d1ypra_	125	d.110.1.1 (A:) Profilin (actin-binding protein) {B	4e-35
d1d1ja_	138	d.110.1.1 (A:) Profilin (actin-binding protein) {H	3e-21
d2pbdp1	139	d.110.1.1 (P:1-139) Profilin (actin-binding protei	3e-18

>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  149 bits (378), Expect = 4e-49
 Identities = 68/86 (79%), Positives = 76/86 (88%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI  I KDFEEPG LA
Sbjct: 1  SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60

Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
          PTGL LGG KYMVIQGE GAVIRGKK
Sbjct: 61 PTGLFLGGEKYMVIQGEQGAVIRGKK 86

>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Acanthamoeba castellanii [TaxId: 5755]

 Score =  121 bits (305), Expect = 5e-38
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
          SWQTYVD +L+       +T AAI+G DG+ WA S+ F    P +   +   F    ++ 
Sbjct: 1  SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56

Query: 62 PTGLHLGGTKYMVIQGEPGAVIRGKK 87
            G  L G  Y+ ++ +  + I GKK
Sbjct: 57 AGGFDLAGVHYVTLRADDRS-IYGKK 81

>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (285), Expect = 4e-35
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
          SWQ Y D+ +        +  A I    G +VWA S      +P EI  I++ F+ P  L
Sbjct: 1  SWQAYTDNLIGT----GKVDKAVIYSRAGDAVWATSGGLS-LQPNEIGEIVQGFDNPAGL 55

Query: 61 APTGLHLGGTKYMVIQGEPGAVIRGKK 87
             GLH+ G K+M+++ +  + I G+ 
Sbjct: 56 QSNGLHIQGQKFMLLRADDRS-IYGRH 81

>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human (Homo sapiens), isoform II [TaxId: 9606]} Length = 138

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Human (Homo sapiens), isoform II [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 3e-21
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
           WQ+YVD+ LMCD        AAIVG+     VWA ++         I   M   ++   
Sbjct: 2  GWQSYVDN-LMCD---GCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREG 57

Query: 60 LAPTGLHLGGTKYMVIQGEP 79
              GL LG  K  VI+   
Sbjct: 58 FFTNGLTLGAKKCSVIRDSL 77

>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human (Homo sapiens), isoform I [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Human (Homo sapiens), isoform I [TaxId: 9606]

 Score = 71.5 bits (175), Expect = 3e-18
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 2  SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSNFPQFK--PEEIAAIMKDFEEP 57
           W  Y+D +LM D        AAIVG+    SVWA           P E+  ++    + 
Sbjct: 2  GWNAYID-NLMAD---GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGK--DR 55

Query: 58 GSLAPTGLHLGGTKYMVIQG----EPGAVIRGKK 87
           S    GL LGG K  VI+     +    +  + 
Sbjct: 56 SSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRT 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d3nula_	130	Profilin (actin-binding protein) {Mouse-ear cress	100.0
d1acfa_	125	Profilin (actin-binding protein) {Acanthamoeba cas	100.0
d1ypra_	125	Profilin (actin-binding protein) {Baker's yeast (S	100.0
d2pbdp1	139	Profilin (actin-binding protein) {Human (Homo sapi	99.94
d1d1ja_	138	Profilin (actin-binding protein) {Human (Homo sapi	99.93

>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-34  Score=189.10  Aligned_cols=89  Identities=76%  Similarity=1.276  Sum_probs=80.4

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA   81 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~   81 (90)
                      |||+|||++|++..+|++|++|||+|+||++||+|++|.+++|+|++.|+++|+||+.++++||+|+|+||+++|+|++.
T Consensus         1 SWq~Yvd~~l~~~~~tg~v~~AAI~g~DGsvWA~S~gf~~l~~~E~~~i~~~f~~~~~~~~~Gi~~~G~KY~~lr~d~~~   80 (130)
T d3nula_           1 SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGA   80 (130)
T ss_dssp             CHHHHHHHTTSCCBTTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTT
T ss_pred             ChHHHHhhhheeecCCCeEeEEEEEcCCCCeeeeCCCCCCCCHHHHHHHHHHhcCccccccCCeEECCeEEEEEecCCCc
Confidence            89999999994322289999999999999999999999568999999999999999999999999999999999999445


Q ss_pred             eEEEecCCC
Q 034584           82 VIRGKKTFE   90 (90)
Q Consensus        82 ~iygkkg~~   90 (90)
                      +||+|||.+
T Consensus        81 ~i~~kk~~~   89 (130)
T d3nula_          81 VIRGKKGPG   89 (130)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEecCCC
Confidence            789999863

>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Acanthamoeba castellanii [TaxId: 5755]

Probab=100.00  E-value=4.3e-35  Score=189.85  Aligned_cols=83  Identities=35%  Similarity=0.659  Sum_probs=80.9

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA   81 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~   81 (90)
                      |||+|||++|++   ||+|++|||+|+||++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| ++
T Consensus         1 SWq~yvd~~L~~---tg~v~~aaI~g~DG~vwA~S~gf-~~~~~E~~~i~~~f~d~~~~~~~Gi~i~G~KY~~~~~d-~~   75 (125)
T d1acfa_           1 SWQTYVDTNLVG---TGAVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR   75 (125)
T ss_dssp             CHHHHHHTTTGG---GTSCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred             ChHHHHHHHhcc---ccCcceeEEEcCCCCEEEECCCC-CCCHHHHHHHHHhccChhhhhhCCEEECCeEEEEEecC-CC
Confidence            899999999999   99999999999999999999999 99999999999999999988999999999999999999 99


Q ss_pred             eEEEecCC
Q 034584           82 VIRGKKTF   89 (90)
Q Consensus        82 ~iygkkg~   89 (90)
                      +|||||++
T Consensus        76 ~i~~kk~~   83 (125)
T d1acfa_          76 SIYGKKGS   83 (125)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            99999986

>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=182.94  Aligned_cols=83  Identities=35%  Similarity=0.750  Sum_probs=79.5

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG   80 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~   80 (90)
                      |||+||| +|++   +++|++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|+| +
T Consensus         1 SWq~Yvd-~L~~---~g~v~~aaI~g~dg~svwA~S~gf-~~~~~E~~~i~~~f~~~~~~~~~Gi~i~G~KY~~~~~d-~   74 (125)
T d1ypra_           1 SWQAYTD-NLIG---TGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D   74 (125)
T ss_dssp             CHHHHHH-HHHH---TSSCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred             CHHHHHH-hHhc---CCCcCeEEEEeCCCCeeEEECCCC-CCCHHHHHHHHHHhcCcchhccCCEEEcCeEEEEEecC-C
Confidence            8999999 7999   99999999999999 699999999 99999999999999999988999999999999999999 9


Q ss_pred             ceEEEecCCC
Q 034584           81 AVIRGKKTFE   90 (90)
Q Consensus        81 ~~iygkkg~~   90 (90)
                      ++||||||++
T Consensus        75 ~~i~~kk~~~   84 (125)
T d1ypra_          75 RSIYGRHDAE   84 (125)
T ss_dssp             SEEEEEETTE
T ss_pred             CeEEEEeCCC
Confidence            9999999863

>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human (Homo sapiens), isoform I [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Human (Homo sapiens), isoform I [TaxId: 9606]

Probab=99.94  E-value=2.8e-28  Score=160.17  Aligned_cols=83  Identities=30%  Similarity=0.528  Sum_probs=70.5

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCC--CEEEecCCCC--CCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEe
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSNFP--QFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQG   77 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~f~--~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~   77 (90)
                      +||+||| +|++   +++|++|||+|+||  ++||+|++|.  +++|+|+..|+.  +||+.++.+||+|+|+||+++|.
T Consensus         2 ~Wq~Yvd-~L~~---~g~v~~AAIiG~~g~~svWA~s~g~~~~~~~~~ei~~~~~--~d~~~~~~~Gi~l~G~Ky~~lr~   75 (139)
T d2pbdp1           2 GWNAYID-NLMA---DGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVG--KDRSSFYVNGLTLGGQKCSVIRD   75 (139)
T ss_dssp             CSHHHHH-HHHT---TSCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHHS--SCCSTHHHHCEEETTEEEEEEEE
T ss_pred             chHHHHH-Hhhc---cCCcceEEEEecCCCceEEEECCCCCcCccCHHHHHHHHh--cCchhhhhcCeEECCEEEEEEec
Confidence            4999999 8999   99999999999998  5999999961  556666665553  78998999999999999999993


Q ss_pred             ----CCCceEEEecCCC
Q 034584           78 ----EPGAVIRGKKTFE   90 (90)
Q Consensus        78 ----d~~~~iygkkg~~   90 (90)
                          ++++++|+|++.+
T Consensus        76 ~~~~~~~~~i~~k~~~~   92 (139)
T d2pbdp1          76 SLLQDGEFSMDLRTKST   92 (139)
T ss_dssp             ETTCTTTCEEEEEECCS
T ss_pred             ccccCCCceEEEeeccc
Confidence                2389999998764

>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human (Homo sapiens), isoform II [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Human (Homo sapiens), isoform II [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=151.86  Aligned_cols=81  Identities=31%  Similarity=0.439  Sum_probs=70.3

Q ss_pred             chhhhhhhhccccCCCCccceEEEEecCC--CEEEecCCCCCCCHHHHHHHHHh-cCCCCCCCccceEEcCEEEEEEEeC
Q 034584            2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSNFPQFKPEEIAAIMKD-FEEPGSLAPTGLHLGGTKYMVIQGE   78 (90)
Q Consensus         2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~f~~~~~~E~~~l~~~-f~d~~~~~~~Gi~l~G~KY~~lr~d   78 (90)
                      +||+||| +|++   +++|++|||+|+||  ++||+|++| ++++.|...|..+ |+||+.++.+||+|+|+||+++|.|
T Consensus         2 ~Wq~Yvd-~L~~---~g~v~~AAI~G~dg~~svWA~S~gf-~~~~~e~~ei~~~~~~d~~~~~~~Gi~l~G~Ky~~lr~d   76 (138)
T d1d1ja_           2 GWQSYVD-NLMC---DGCCQEAAIVGYCDAKYVWAATAGG-VFQSITPIEIDMIVGKDREGFFTNGLTLGAKKCSVIRDS   76 (138)
T ss_dssp             CTHHHHH-HHST---TSCEEEEEEEECSSSCSEEEECTTS-SGGGCCHHHHHHHHCSCSSHHHHHCEEETTEEEEEEEEE
T ss_pred             chHHHHH-hhcc---ccccceEEEEecCCCceEEEECCCC-CcCccCHHHHHHHhcCChhHHhhcCeEECCcEEEEEecc
Confidence            5999999 7999   99999999999987  699999999 8888888777764 6789888999999999999999976


Q ss_pred             C----CceEEEec
Q 034584           79 P----GAVIRGKK   87 (90)
Q Consensus        79 ~----~~~iygkk   87 (90)
                      +    +.++|+|+
T Consensus        77 ~~~~~~~~~~~~~   89 (138)
T d1d1ja_          77 LYVDGDCTMDIRT   89 (138)
T ss_dssp             SSSTTCCEEEEEE
T ss_pred             ccccCcceeeecc
Confidence            2    56677653