Citrus Sinensis ID: 034653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MKGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGKIPKHIQ
Secondary Structure (PSIPRED)
ccccHHEEccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MKGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMvgseersiHNIQDLIDTAEYALSLLkegkipkhiq
Flexible Loop (DISEMBL)
mkgliwatavdskhqkRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFmvgseersihNIQDLIDTAEYALSLlkegkipkhiq
Low Complexity Region (SEG)
MKGLIWATAVDSKHQKRVLSLYRQILRSLNSPklelslaarlakkaearaIFMVGSEERSIHNIQDLIDTAEYALSLLKEGKIPKHIQ
Disordered region (IsUnstruct)
***LIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLL**********
Disordered Region (DISOPRED)
**GLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGK******
Disordered Region (DISEMBL)
MKGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGKIPKHIQ
Disordered Region (DISPRO)
*KGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGKIP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGKIPKHIQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
255578827	90	conserved hypothetical protein [Ricinus	0.988	0.966	0.784	6e-31
449442323	90	PREDICTED: uncharacterized protein LOC10	0.988	0.966	0.75	2e-30
359479643	90	PREDICTED: uncharacterized protein LOC10	0.988	0.966	0.75	5e-30
224081387	92	predicted protein [Populus trichocarpa]	0.954	0.913	0.741	3e-28
357474397	256	hypothetical protein MTR_4g078490 [Medic	0.988	0.339	0.696	1e-26
388516809	91	unknown [Medicago truncatula]	0.977	0.945	0.704	4e-26
356542967	89	PREDICTED: uncharacterized protein LOC10	0.977	0.966	0.681	1e-25
356517504	172	PREDICTED: uncharacterized protein LOC10	0.931	0.476	0.686	3e-25
357474395	254	hypothetical protein MTR_4g078490 [Medic	0.920	0.318	0.719	1e-24
297840841	91	hypothetical protein ARALYDRAFT_893850 [	0.977	0.945	0.678	2e-24

>gi|255578827|ref|XP_002530268.1| conserved hypothetical protein [Ricinus communis] gi|223530200|gb|EEF32108.1| conserved hypothetical protein [Ricinus communis]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 80/88 (90%), Gaps = 1/88 (1%)

Query: 2  KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
          KGLI+ATA D ++++ RVLSLYRQ+LRSLNSP L L+LAARLAKKAE RAIFMV SEERS
Sbjct: 3  KGLIFATAEDLARNRGRVLSLYRQLLRSLNSPSLPLNLAARLAKKAEVRAIFMVASEERS 62

Query: 61 IHNIQDLIDTAEYALSLLKEGKIPKHIQ 88
          +HNI DLIDTAEYALSLL++G+IPKHIQ
Sbjct: 63 LHNIDDLIDTAEYALSLLRKGEIPKHIQ 90

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442323|ref|XP_004138931.1| PREDICTED: uncharacterized protein LOC101207229 [Cucumis sativus] gi|449527448|ref|XP_004170723.1| PREDICTED: uncharacterized LOC101207229 [Cucumis sativus]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 80/88 (90%), Gaps = 1/88 (1%)

Query: 2  KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
          KG+IWATA D ++++ RV+SLYRQILRSLNSP L LS AARLAKKAE RAIFM+ SEERS
Sbjct: 3  KGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEERS 62

Query: 61 IHNIQDLIDTAEYALSLLKEGKIPKHIQ 88
          +HNI+DLIDTAEY+LSLL++G+IPK+IQ
Sbjct: 63 LHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479643|ref|XP_003632314.1| PREDICTED: uncharacterized protein LOC100852488 [Vitis vinifera] gi|296085220|emb|CBI28715.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 80/88 (90%), Gaps = 1/88 (1%)

Query: 2  KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
          KGLIWATA D ++++ +VLSLYRQILRS+NSPKLELSLAARLAKKAE R+IFM+ +EERS
Sbjct: 3  KGLIWATAEDLARNRGKVLSLYRQILRSINSPKLELSLAARLAKKAEVRSIFMLAAEERS 62

Query: 61 IHNIQDLIDTAEYALSLLKEGKIPKHIQ 88
          +HNI DLIDTA Y+LSLL+ G+IPK+IQ
Sbjct: 63 LHNIADLIDTAHYSLSLLRNGQIPKYIQ 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081387|ref|XP_002306392.1| predicted protein [Populus trichocarpa] gi|222855841|gb|EEE93388.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 75/85 (88%), Gaps = 1/85 (1%)

Query: 2  KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
          KGLIWATA D ++++ RV+SLYRQILRSLNSP L L+LA RLAKKAE RAIFM+GSEE S
Sbjct: 3  KGLIWATAEDLARNRGRVISLYRQILRSLNSPSLPLNLAERLAKKAEVRAIFMLGSEETS 62

Query: 61 IHNIQDLIDTAEYALSLLKEGKIPK 85
          +HNI+DL DTAEYALS+LK+G+IP 
Sbjct: 63 VHNIEDLFDTAEYALSILKKGEIPN 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474397|ref|XP_003607483.1| hypothetical protein MTR_4g078490 [Medicago truncatula] gi|355508538|gb|AES89680.1| hypothetical protein MTR_4g078490 [Medicago truncatula]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 73/89 (82%), Gaps = 2/89 (2%)

Query: 2   KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
           KGLIWATA D  +++ RVLSLYR ILRSLNSP L L+ AARLAKKAE RA+F VGS+ERS
Sbjct: 168 KGLIWATAEDLHRNRGRVLSLYRHILRSLNSPSLPLTFAARLAKKAEVRAMFWVGSDERS 227

Query: 61  IHNIQDLIDTAEYALSLLKEGKI-PKHIQ 88
           +HNI DLID AEY+LS LK+G+  P+HI 
Sbjct: 228 LHNIADLIDAAEYSLSFLKKGQFPPRHIT 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516809|gb|AFK46466.1| unknown [Medicago truncatula]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 2  KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
          KGLIWATA D  +++ RVLSLYR ILRSLNSP L L+ AARLAKKAE RA+F VGS+ERS
Sbjct: 3  KGLIWATAEDLHRNRGRVLSLYRHILRSLNSPSLPLTFAARLAKKAEVRAMFWVGSDERS 62

Query: 61 IHNIQDLIDTAEYALSLLKEGKI-PKHI 87
          +HNI DLID AEY+LS LK+G+  P+HI
Sbjct: 63 LHNIADLIDAAEYSLSFLKKGQFPPRHI 90

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542967|ref|XP_003539935.1| PREDICTED: uncharacterized protein LOC100817338 [Glycine max]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 3  GLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSI 61
          G IWATA D  +++ RVLSLYRQILR LNSP+L L  AARLAKKAEARA+F VGS+ERS+
Sbjct: 2  GRIWATAEDLGRNRARVLSLYRQILRGLNSPELRLGFAARLAKKAEARAMFWVGSDERSL 61

Query: 62 HNIQDLIDTAEYALSLLKEGKI-PKHIQ 88
          HNI DLID AEY+LS L++G++ P+HI 
Sbjct: 62 HNIADLIDAAEYSLSFLRKGQLPPRHIN 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517504|ref|XP_003527427.1| PREDICTED: uncharacterized protein LOC100803504 isoform 2 [Glycine max]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 70/83 (84%), Gaps = 1/83 (1%)

Query: 3   GLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSI 61
           G IW+TA D  +++ RVLSLYRQILR LNSP+L L  AARLAKKAEARA+F VGS+ERS+
Sbjct: 85  GRIWSTAEDLGRNRARVLSLYRQILRGLNSPELRLGFAARLAKKAEARAMFWVGSDERSL 144

Query: 62  HNIQDLIDTAEYALSLLKEGKIP 84
           HNI DLID AEY+LS L++G++P
Sbjct: 145 HNIADLIDAAEYSLSFLRKGQLP 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474395|ref|XP_003607482.1| hypothetical protein MTR_4g078490 [Medicago truncatula] gi|355508537|gb|AES89679.1| hypothetical protein MTR_4g078490 [Medicago truncatula]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 68/82 (82%), Gaps = 1/82 (1%)

Query: 2   KGLIWATAVD-SKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERS 60
           KGLIWATA D  +++ RVLSLYR ILRSLNSP L L+ AARLAKKAE RA+F VGS+ERS
Sbjct: 168 KGLIWATAEDLHRNRGRVLSLYRHILRSLNSPSLPLTFAARLAKKAEVRAMFWVGSDERS 227

Query: 61  IHNIQDLIDTAEYALSLLKEGK 82
           +HNI DLID AEY+LS LK+ K
Sbjct: 228 LHNIADLIDAAEYSLSFLKKDK 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840841|ref|XP_002888302.1| hypothetical protein ARALYDRAFT_893850 [Arabidopsis lyrata subsp. lyrata] gi|297334143|gb|EFH64561.1| hypothetical protein ARALYDRAFT_893850 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1  MKGLIWATAVDS-KHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEER 59
          MK LIW TA ++ K++ +VLSLYRQ+LRS+NSPKL+LS AARLAKKAE + IF+ GSEE 
Sbjct: 1  MKSLIWLTAEEAAKNRGKVLSLYRQLLRSINSPKLQLSYAARLAKKAEVKTIFLFGSEEI 60

Query: 60 SIHNIQDLIDTAEYALSLLKEGKIPKH 86
          S HN+ DLI TAEYALS LK+GKIP +
Sbjct: 61 SKHNVADLIRTAEYALSQLKQGKIPNN 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:4515102717	91	AT1G65032 "AT1G65032" [Arabido	0.977	0.945	0.517	5.3e-17

TAIR|locus:4515102717 AT1G65032 "AT1G65032" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 45/87 (51%), Positives = 56/87 (64%)

Query:     1 MKGLIWATAVDS-KHQKRVLSLYRQILRSLNSPXXXXXXXXXXXXXXXXXXIFMVGSEER 59
             MK LIW TA ++ K++ +VLSLYRQ+LRS+NSP                  IF+ GSEE 
Sbjct:     1 MKSLIWLTAEEAAKNRGKVLSLYRQLLRSINSPKLQLSYASRLAKKAEVRTIFLFGSEEI 60

Query:    60 SIHNIQDLIDTAEYALSLLKEGKIPKH 86
             S HN+ DLI T EYALS LK+GKIP +
Sbjct:    61 SKHNVADLIRTGEYALSQLKQGKIPNN 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        70   0.00091  102 3  11 22  0.45    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  486 (52 KB)
  Total size of DFA:  85 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.14u 0.18s 7.32t   Elapsed:  00:00:00
  Total cpu time:  7.14u 0.18s 7.32t   Elapsed:  00:00:00
  Start:  Thu May  9 22:30:16 2013   End:  Thu May  9 22:30:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.3383.1 hypothetical protein (83 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	0.003

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 32.5 bits (75), Expect = 0.003
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 16 KRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYAL 75
          K VLSLYRQ+LR+  + K       R   +   R  F    +      I+ L+   +  L
Sbjct: 1  KEVLSLYRQLLRA--ARKFP-DYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQL 57

Query: 76 SLLK 79
           LLK
Sbjct: 58 ELLK 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	98.38
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	98.11
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	89.4
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	87.8

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=98.38  E-value=1.3e-06  Score=51.89  Aligned_cols=60  Identities=27%  Similarity=0.304  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHHhHHHHHHHhh
Q 034653           17 RVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLK   79 (88)
Q Consensus        17 ~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid~aey~Ls~L~   79 (88)
                      .||||||++||.-+.  +|..-+. -.-+..||.-|--...+.+.+.|+.++..|+..|++|+
T Consensus         2 ~vL~LYR~lLR~~~~--~~~~~~r-~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    2 QVLSLYRQLLREASK--FPDYNFR-SYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             hHHHHHHHHHHHhhh--cCCcchH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            589999999998654  5544333 34466799999999999999999999999999999885

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=98.11  E-value=8.4e-06  Score=47.19  Aligned_cols=57  Identities=37%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHHhHHHHHH
Q 034653           17 RVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALS   76 (88)
Q Consensus        17 ~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid~aey~Ls   76 (88)
                      .||+|||++||+..+  +|-.- .+-.-+..+|.-|--...|.+...|..++..|+-.|.
T Consensus         2 ~vl~LYR~lLR~~~~--~~~~~-~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~   58 (59)
T PF05347_consen    2 RVLSLYRQLLRAARS--FPDDS-EREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELE   58 (59)
T ss_pred             hHHHHHHHHHHHHHH--cCCcc-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence            599999999999844  44433 5666689999999999999999999999999987764

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=89.40  E-value=0.18  Score=32.06  Aligned_cols=14  Identities=64%  Similarity=1.001  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHhcCC
Q 034653           18 VLSLYRQILRSLNS   31 (88)
Q Consensus        18 VlSLYRqiLRslnS   31 (88)
                      |+||||.|||.|..
T Consensus         1 V~~lYR~lLRel~~   14 (104)
T PF13233_consen    1 VLSLYRSLLRELRR   14 (104)
T ss_pred             ChHHHHHHHHHHHh
Confidence            78999999999975

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=87.80  E-value=1.3  Score=27.55  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHH
Q 034653           15 QKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLID   69 (88)
Q Consensus        15 r~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid   69 (88)
                      |+...+||.++|+.|.  .+|=+-+-|.+-.+=++.-+-+--+|-.+.-|++-|.
T Consensus         4 r~~L~~lY~~~L~~L~--~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i~   56 (57)
T PF04716_consen    4 REALISLYNKTLKALK--KIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKIG   56 (57)
T ss_pred             HHHHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHhC
Confidence            6788999999999999  8999999999888877777766666767766766654

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00