Citrus Sinensis ID: 034694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MNMGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPSKTSEFSADGGGQGDSGGSQAKGQND
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHEHHHEEccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnmggafwGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVlracsepppsktsefsadgggqgdsggsqakgqnd
Flexible Loop (DISEMBL)
mnmggafwGTRVMEIVKkhdsgglvwkrikltttrkanakkrllrvwqneavlracsepppsktsefsadgggqgdsggsqakgqnd
Low Complexity Region (SEG)
MNMGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPSKTSEFsadgggqgdsggsqakgqND
Disordered region (IsUnstruct)
****GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRA********************************
Disordered Region (DISOPRED)
*****AFWGTRVMEIVKKHDSGGLVWKRIKLTTT******KRLLRVWQNEAV***********************************
Disordered Region (DISEMBL)
MNMGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRAC*******************************
Disordered Region (DISPRO)
***GGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACS******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNMGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPSKTSEFSADGGGQGDSGGSQAKGQND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
255543645	81	conserved hypothetical protein [Ricinus	0.908	0.975	0.812	5e-29
225425170	75	PREDICTED: uncharacterized protein LOC10	0.839	0.973	0.835	4e-28
449445578	74	PREDICTED: uncharacterized protein LOC10	0.724	0.851	0.904	3e-26
224060305	82	predicted protein [Populus trichocarpa]	0.781	0.829	0.852	9e-26
296088720	65	unnamed protein product [Vitis vinifera]	0.724	0.969	0.825	3e-22
356569111	70	PREDICTED: uncharacterized protein LOC10	0.620	0.771	0.944	5e-22
356527453	76	PREDICTED: uncharacterized protein LOC10	0.643	0.736	0.910	9e-22
388499974	78	unknown [Lotus japonicus]	0.781	0.871	0.867	5e-21
18396334	81	uncharacterized protein [Arabidopsis tha	0.758	0.814	0.718	1e-20
297851172	81	hypothetical protein ARALYDRAFT_890267 [	0.620	0.666	0.888	3e-20

>gi|255543645|ref|XP_002512885.1| conserved hypothetical protein [Ricinus communis] gi|223547896|gb|EEF49388.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 69/80 (86%), Gaps = 1/80 (1%)

Query: 3  MGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPS 62
          M GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+AC+EPPPS
Sbjct: 1  MLGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACAEPPPS 60

Query: 63 KTSEFS-ADGGGQGDSGGSQ 81
          KTS  S A G  + D   +Q
Sbjct: 61 KTSALSDATGVAEKDGLSTQ 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425170|ref|XP_002264458.1| PREDICTED: uncharacterized protein LOC100264285 [Vitis vinifera]

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 64/73 (87%)

Query: 3  MGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPS 62
          M GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+ CSEPPPS
Sbjct: 1  MAGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKVCSEPPPS 60

Query: 63 KTSEFSADGGGQG 75
          KTS    +  G+ 
Sbjct: 61 KTSAPGTNVTGEA 73

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445578|ref|XP_004140549.1| PREDICTED: uncharacterized protein LOC101220585 [Cucumis sativus] gi|449519856|ref|XP_004166950.1| PREDICTED: uncharacterized protein LOC101231766 [Cucumis sativus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 60/63 (95%)

Query: 3  MGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPS 62
          M GAFWGTRV+EIVKKHDSGGLVWKRIKLTTTRKANAKKRL RVWQNEAVL+ACSEPPP 
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLHRVWQNEAVLKACSEPPPP 60

Query: 63 KTS 65
          K+S
Sbjct: 61 KSS 63

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060305|ref|XP_002300133.1| predicted protein [Populus trichocarpa] gi|222847391|gb|EEE84938.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 60/68 (88%)

Query: 4  GGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPSK 63
           GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+ACS+  PSK
Sbjct: 4  AGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSQSQPSK 63

Query: 64 TSEFSADG 71
           S   A G
Sbjct: 64 MSAAGASG 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088720|emb|CBI38170.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 55/63 (87%)

Query: 13 MEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPSKTSEFSADGG 72
          MEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+ CSEPPPSKTS    +  
Sbjct: 1  MEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKVCSEPPPSKTSAPGTNVT 60

Query: 73 GQG 75
          G+ 
Sbjct: 61 GEA 63

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569111|ref|XP_003552749.1| PREDICTED: uncharacterized protein LOC100819437 [Glycine max]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 52/54 (96%)

Query: 7  FWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPP 60
          FWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+ACS  P
Sbjct: 3  FWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACSATP 56

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527453|ref|XP_003532325.1| PREDICTED: uncharacterized protein LOC100804262 [Glycine max]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 52/56 (92%)

Query: 6  AFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPP 61
          AFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+AC    P
Sbjct: 2  AFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACVAQVP 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499974|gb|AFK38053.1| unknown [Lotus japonicus]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 62/68 (91%)

Query: 3  MGGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSEPPPS 62
          M GAFWGTRVMEIVKK DSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL+A S+ PPS
Sbjct: 1  MSGAFWGTRVMEIVKKRDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKATSQSPPS 60

Query: 63 KTSEFSAD 70
           +S FSAD
Sbjct: 61 MSSSFSAD 68

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396334|ref|NP_564283.1| uncharacterized protein [Arabidopsis thaliana] gi|14423400|gb|AAK62382.1|AF386937_1 Unknown protein [Arabidopsis thaliana] gi|24899683|gb|AAN65056.1| Unknown protein [Arabidopsis thaliana] gi|26452099|dbj|BAC43139.1| unknown protein [Arabidopsis thaliana] gi|332192708|gb|AEE30829.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%), Gaps = 5/71 (7%)

Query: 5  GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSE-----P 59
          GAFWGTRVME+VKKHDSGGL+WKRIKLT TRKANAK RL RVWQNEAVLRAC E     P
Sbjct: 6  GAFWGTRVMELVKKHDSGGLLWKRIKLTPTRKANAKTRLRRVWQNEAVLRACGESDAPNP 65

Query: 60 PPSKTSEFSAD 70
          P +  ++ S++
Sbjct: 66 PGASNTKSSSN 76

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851172|ref|XP_002893467.1| hypothetical protein ARALYDRAFT_890267 [Arabidopsis lyrata subsp. lyrata] gi|297339309|gb|EFH69726.1| hypothetical protein ARALYDRAFT_890267 [Arabidopsis lyrata subsp. lyrata]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 50/54 (92%)

Query: 5  GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSE 58
          GAFWGTRVME+VKKHDSGGL+WKRIKLT TRKANAK RL RVWQNEAVLRAC E
Sbjct: 6  GAFWGTRVMELVKKHDSGGLLWKRIKLTPTRKANAKTRLRRVWQNEAVLRACGE 59

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:505006150	81	AT1G27435 "AT1G27435" [Arabido	0.620	0.666	0.888	4.3e-22

TAIR|locus:505006150 AT1G27435 "AT1G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 48/54 (88%), Positives = 50/54 (92%)

Query:     5 GAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACSE 58
             GAFWGTRVME+VKKHDSGGL+WKRIKLT TRKANAK RL RVWQNEAVLRAC E
Sbjct:     6 GAFWGTRVMELVKKHDSGGLLWKRIKLTPTRKANAKTRLRRVWQNEAVLRACGE 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        69   0.00091  102 3  11 22  0.47    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  550 (59 KB)
  Total size of DFA:  105 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.81u 0.13s 8.94t   Elapsed:  00:00:01
  Total cpu time:  8.81u 0.13s 8.94t   Elapsed:  00:00:01
  Start:  Thu May  9 23:17:57 2013   End:  Thu May  9 23:17:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006967001 SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (75 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PF09784	103	L31: Mitochondrial ribosomal protein L31; InterPro	99.73

>PF09784 L31: Mitochondrial ribosomal protein L31; InterPro: IPR016340 This group represents a predicted mitochondrial ribosomal protein L31, fungal type [, ]

Probab=99.73  E-value=2.5e-18  Score=119.74  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=35.5

Q ss_pred             CCcceeee-eecChhHHHHHHHHHHHHHHHHHHHHHh
Q 034694           21 SGGLVWKR-IKLTTTRKANAKKRLLRVWQNEAVLRAC   56 (87)
Q Consensus        21 sGGLLWK~-~RLS~trKan~RkRLr~Vdqvia~l~a~   56 (87)
                      +||||||+ ||||++||+|+|+||+.||+||++|+++
T Consensus         5 ~GGlLWK~pwRlS~~qK~r~R~Rlr~VD~vi~~l~~a   41 (103)
T PF09784_consen    5 LGGLLWKIPWRLSSPQKARQRKRLRAVDSVIDTLYEA   41 (103)
T ss_pred             ccceeecCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 9999999999999999999999999988

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00