Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 85
PLN00157 132
PLN00157, PLN00157, histone H2A; Provisional
1e-32 PTZ00017 134
PTZ00017, PTZ00017, histone H2A; Provisional
7e-30 cd00074 115
cd00074, H2A, Histone 2A; H2A is a subunit of the
7e-29 smart00414 106
smart00414, H2A, Histone 2A
4e-26 PLN00156 139
PLN00156, PLN00156, histone H2AX; Provisional
6e-23 PLN00153 129
PLN00153, PLN00153, histone H2A; Provisional
4e-21 COG5262 132
COG5262, HTA1, Histone H2A [Chromatin structure an
4e-19 PLN00154 136
PLN00154, PLN00154, histone H2A; Provisional
1e-17 PLN00155 58
PLN00155, PLN00155, histone H2A; Provisional
2e-16 PTZ00252 134
PTZ00252, PTZ00252, histone H2A; Provisional
3e-14 pfam00125 75
pfam00125, Histone, Core histone H2A/H2B/H3/H4
2e-10
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional
Back Hide alignment and domain information
Score = 109 bits (273), Expect = 1e-32
Identities = 50/67 (74%), Positives = 53/67 (79%)
Query: 8 KRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYL 67
G G RKGGG KK SRS KAGLQFPVGRI RYLK G+Y+ RVG GAPVYLAAVLEYL
Sbjct: 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60
Query: 68 AAEVVLL 74
AAEV+ L
Sbjct: 61 AAEVLEL 67
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional
Back Show alignment and domain information
Score = 102 bits (256), Expect = 7e-30
Identities = 51/67 (76%), Positives = 55/67 (82%), Gaps = 2/67 (2%)
Query: 8 KRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYL 67
K GG K G KKKPVSRS KAGLQFPVGR+ RYLKKGRY++RVG GAPVYLAAVLEYL
Sbjct: 4 KGKTGGGKAG--KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYL 61
Query: 68 AAEVVLL 74
AEV+ L
Sbjct: 62 TAEVLEL 68
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome
Back Show alignment and domain information
Score = 99.3 bits (248), Expect = 7e-29
Identities = 44/58 (75%), Positives = 48/58 (82%)
Query: 14 RKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEV 71
+ GG K K SRS +AGLQFPVGRI RYLKKGRY++RVG GAPVYLAAVLEYL AEV
Sbjct: 1 KGGGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEV 58
The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins. Length = 115
>gnl|CDD|197711 smart00414, H2A, Histone 2A
Back Show alignment and domain information
Score = 92.0 bits (229), Expect = 4e-26
Identities = 37/47 (78%), Positives = 41/47 (87%)
Query: 25 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEV 71
SRS +AGLQFPVGRI R L+KG Y++RVG GAPVYLAAVLEYL AEV
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEV 47
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional
Back Show alignment and domain information
Score = 85.0 bits (210), Expect = 6e-23
Identities = 43/65 (66%), Positives = 50/65 (76%)
Query: 10 GAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAA 69
G +G K VSRS KAGLQFPVGRI R+LK G+Y++RVG GAPVYL+AVLEYLAA
Sbjct: 6 TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 65
Query: 70 EVVLL 74
EV+ L
Sbjct: 66 EVLEL 70
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional
Back Show alignment and domain information
Score = 80.1 bits (197), Expect = 4e-21
Identities = 47/64 (73%), Positives = 52/64 (81%)
Query: 11 AGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAE 70
AG KG KK VSRS KAGLQFPVGRI RYLKKG+Y++R+G GAPVYLAAVLEYL AE
Sbjct: 2 AGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAE 61
Query: 71 VVLL 74
V+ L
Sbjct: 62 VLEL 65
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Score = 75.3 bits (185), Expect = 4e-19
Identities = 42/69 (60%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 3 SGGKVKRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAA 62
SGGK + A R SRS KAGL FPVGR+ R LKKG Y R+G GAPVYLAA
Sbjct: 3 SGGKGGKAADARVSQ-------SRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAA 55
Query: 63 VLEYLAAEV 71
VLEYLAAE+
Sbjct: 56 VLEYLAAEI 64
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional
Back Show alignment and domain information
Score = 71.1 bits (174), Expect = 1e-17
Identities = 39/68 (57%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 8 KRGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKK-GRYSQRVGTGAPVYLAAVLEY 66
K A K KKKP SRS +AGLQFPVGRI R LK+ RVG A VY AA+LEY
Sbjct: 13 KTTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEY 72
Query: 67 LAAEVVLL 74
L AEV+ L
Sbjct: 73 LTAEVLEL 80
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional
Back Show alignment and domain information
Score = 65.9 bits (160), Expect = 2e-16
Identities = 43/57 (75%), Positives = 47/57 (82%)
Query: 11 AGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYL 67
AG KG KK VSRS KAGLQFPVGRI RYLKKG+Y++R+G GAPVYLAAVLEYL
Sbjct: 2 AGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional
Back Show alignment and domain information
Score = 62.7 bits (152), Expect = 3e-14
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
K RS KAGL FPVGR+G L++G+Y++R+G VY+AAVLEYL AE++ L + A
Sbjct: 12 SKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAA 71
Query: 80 A 80
A
Sbjct: 72 A 72
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4
Back Show alignment and domain information
Score = 51.4 bits (124), Expect = 2e-10
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 26 RSVKAGLQFPVGRIGRYLKKGRYS-QRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
S L+ P R+ R LK+G Y+ R+ + APV L LE L E++ A
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLA 55
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
85
PLN00156 139
histone H2AX; Provisional
99.97 PLN00153 129
histone H2A; Provisional
99.97 PLN00157 132
histone H2A; Provisional
99.97 PLN00154 136
histone H2A; Provisional
99.97 PTZ00017 134
histone H2A; Provisional
99.97 PTZ00252 134
histone H2A; Provisional
99.97 smart00414 106
H2A Histone 2A.
99.96 KOG1756 131
consensus Histone 2A [Chromatin structure and dyna
99.96 cd00074 115
H2A Histone 2A; H2A is a subunit of the nucleosome
99.96 COG5262 132
HTA1 Histone H2A [Chromatin structure and dynamics
99.93 PLN00155 58
histone H2A; Provisional
99.92 KOG1757 131
consensus Histone 2A [Chromatin structure and dyna
99.92 PF00125 75
Histone: Core histone H2A/H2B/H3/H4 histone h2a si
98.97 COG5247 113
BUR6 Class 2 transcription repressor NC2, alpha su
97.21 PLN00035 103
histone H4; Provisional
97.2 PF00808 65
CBFD_NFYB_HMF: Histone-like transcription factor (
96.53 PTZ00015 102
histone H4; Provisional
95.38 KOG1659 224
consensus Class 2 transcription repressor NC2, alp
93.99 smart00803 65
TAF TATA box binding protein associated factor. TA
92.94 COG2036 91
HHT1 Histones H3 and H4 [Chromatin structure and d
92.21 smart00417 74
H4 Histone H4.
90.65 cd00076 85
H4 Histone H4, one of the four histones, along wit
90.14 KOG1657 236
consensus CCAAT-binding factor, subunit C (HAP5) [
87.96 COG5208 286
HAP5 CCAAT-binding factor, subunit C [Transcriptio
80.32
>PLN00156 histone H2AX; Provisional
Back Hide alignment and domain information
Probab=99.97 E-value=3.3e-32 Score=191.94 Aligned_cols=67 Identities=64% Similarity=0.887 Sum_probs=63.2
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
++.+++..|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||||.|+|+-
T Consensus 13 ~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~k 79 (139)
T PLN00156 13 KPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 79 (139)
T ss_pred cccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3346788999999999999999999999999999999999999999999999999999999999874
>PLN00153 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=6.2e-32 Score=188.62 Aligned_cols=65 Identities=69% Similarity=0.979 Sum_probs=61.7
Q ss_pred CCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 19 PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 19 ~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
.+++.+|+|+||||||||+||||+|++++|++||+++||||||||||||++||||||||.|+||-
T Consensus 10 ~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~k 74 (129)
T PLN00153 10 SGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNK 74 (129)
T ss_pred cccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34578999999999999999999999999999999999999999999999999999999999974
>PLN00157 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=6.7e-32 Score=189.05 Aligned_cols=66 Identities=70% Similarity=0.954 Sum_probs=62.5
Q ss_pred CCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 18 GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 18 ~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
+.+++..|+|+||||||||+||||+|++++|++||+++||||||||||||++||||||||.|+|+-
T Consensus 11 ~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~k 76 (132)
T PLN00157 11 GGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76 (132)
T ss_pred ccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445678999999999999999999999999999999999999999999999999999999999874
>PLN00154 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.5e-31 Score=188.05 Aligned_cols=67 Identities=54% Similarity=0.637 Sum_probs=61.9
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCC-ccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGR-YSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~-~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
++.+++..|+|+||||||||+||||+||+++ |.+||+++|||||||||||||+||||||||+|+|+-
T Consensus 22 ~~~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~k 89 (136)
T PLN00154 22 DKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 89 (136)
T ss_pred ccCCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3345688999999999999999999999998 468999999999999999999999999999999974
>PTZ00017 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.7e-31 Score=187.38 Aligned_cols=64 Identities=75% Similarity=1.049 Sum_probs=61.5
Q ss_pred CCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 20 ~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
+++..|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||||+|+|+-
T Consensus 14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~k 77 (134)
T PTZ00017 14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNK 77 (134)
T ss_pred CcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999999999999999999999999999874
>PTZ00252 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=2.9e-31 Score=186.27 Aligned_cols=60 Identities=55% Similarity=0.874 Sum_probs=57.1
Q ss_pred CCCC-ccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 22 KPVS-RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 22 k~~s-~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
+..+ +|+||||||||+||||+|++++|++||+++||||||||||||++||||||||.|+|
T Consensus 13 ~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d 73 (134)
T PTZ00252 13 KSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQ 73 (134)
T ss_pred ccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 99999999999999999999999999999999999999999999999999999975
>smart00414 H2A Histone 2A
Back Show alignment and domain information
Probab=99.96 E-value=8.3e-30 Score=172.25 Aligned_cols=59 Identities=68% Similarity=0.949 Sum_probs=57.2
Q ss_pred CccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 25 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 25 s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
|+|+||||||||+||||+|++++|++||+++||||||||||||++||||||||+|+++-
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k 59 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNK 59 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999873
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=99.96 E-value=8.8e-30 Score=177.90 Aligned_cols=64 Identities=66% Similarity=0.904 Sum_probs=61.1
Q ss_pred CCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 20 ~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
+++..|+|.++|||||||||+|+||+++|++||+++|||||+||||||++||||+|||+|+||-
T Consensus 14 ~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnk 77 (131)
T KOG1756|consen 14 AKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 77 (131)
T ss_pred hhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcC
Confidence 4567899999999999999999999999999999999999999999999999999999999973
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome
Back Show alignment and domain information
Probab=99.96 E-value=2.6e-29 Score=171.94 Aligned_cols=66 Identities=70% Similarity=0.977 Sum_probs=62.6
Q ss_pred CCCCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 17 GGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 17 ~~~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+|.+++.+|+|+|+||||||+||||+|++++|++||+++|+|||+||||||++||||||+|.|+++
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~ 69 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDN 69 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356677889999999999999999999999999999999999999999999999999999999986
The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=99.93 E-value=2e-26 Score=160.28 Aligned_cols=64 Identities=61% Similarity=0.840 Sum_probs=60.5
Q ss_pred CCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 20 ~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
.+-..|+|.++||+|||+||+|+||+++|..||+++|+||++||||||++||||||||.|.|+-
T Consensus 13 ~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~k 76 (132)
T COG5262 13 ARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76 (132)
T ss_pred chhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3456799999999999999999999999999999999999999999999999999999999873
>PLN00155 histone H2A; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=3.4e-26 Score=141.40 Aligned_cols=49 Identities=80% Similarity=1.280 Sum_probs=46.3
Q ss_pred CCCCCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHH
Q 034732 19 PKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYL 67 (85)
Q Consensus 19 ~~~k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYL 67 (85)
.+++.+|+|+||||||||+||||+|++++|++||+++||||||||||||
T Consensus 10 ~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 10 SGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred cccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 3456789999999999999999999999999999999999999999997
>KOG1757 consensus Histone 2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=99.92 E-value=4.9e-26 Score=157.71 Aligned_cols=62 Identities=58% Similarity=0.706 Sum_probs=58.7
Q ss_pred CCCCCCccccccccccccchhhhhccCCcc-ccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYS-QRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 20 ~~k~~s~SsragLqFpV~rv~r~Lr~~~~~-~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
+.+..|+|+|+||||||+||||+|+....+ .||++++.||+||||||||+||||||||.++|
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKd 79 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 79 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 478899999999999999999999997777 79999999999999999999999999999987
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]
Back Show alignment and domain information
Probab=98.97 E-value=2.7e-10 Score=70.27 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=51.0
Q ss_pred cccccccccccchhhhhccCCccc-cccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 27 SVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 27 SsragLqFpV~rv~r~Lr~~~~~~-Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.+..+.||+.|+.+.+....+.. ||++.|.+||.+++||++.+|+|+|++.|..+
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~ 58 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHA 58 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhc
Confidence 456788999999999999988885 99999999999999999999999999998754
Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Back Show alignment and domain information
Probab=97.21 E-value=0.00033 Score=48.21 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=46.6
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.||+.|+.+.|+....-..|+..+||...-.||.+.++|+.+++.+|..-
T Consensus 23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~ 72 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKK 72 (113)
T ss_pred cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999998888999999999999999999999999999998753
>PLN00035 histone H4; Provisional
Back Show alignment and domain information
Probab=97.20 E-value=0.00034 Score=47.54 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.5
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+|..-|.|+++.+. ..|||..+..-|..+||.+..+|+.-|..++.
T Consensus 30 ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~ 75 (103)
T PLN00035 30 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTE 75 (103)
T ss_pred CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999874 89999999999999999999999998887764
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin
Back Show alignment and domain information
Probab=96.53 E-value=0.0029 Score=38.16 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=41.9
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.||+++|.+.+|...-..+|+..+...++-..|.+..++..-|...|..+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~ 51 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRD 51 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999998666899999999999999988888888888777654
The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
>PTZ00015 histone H4; Provisional
Back Show alignment and domain information
Probab=95.38 E-value=0.022 Score=38.56 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=39.6
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+|..-|.|+++.+ =..|||..+..-+..+||.+..+|+.-|..+|.
T Consensus 31 I~k~~IrRLarr~-GvkRIS~d~y~e~r~vle~~l~~I~rdav~~ae 76 (102)
T PTZ00015 31 ITKGAIRRLARRG-GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTE 76 (102)
T ss_pred CCHHHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667899999985 569999999999999999888999988877764
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Back Show alignment and domain information
Probab=93.99 E-value=0.052 Score=41.36 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=44.9
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
.||+.||.+.|+...--.+|....||...--||.+..+||..++.+++
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~ 60 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITR 60 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999988889999999999999999999999999988765
>smart00803 TAF TATA box binding protein associated factor
Back Show alignment and domain information
Probab=92.94 E-value=0.16 Score=31.42 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=41.0
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
.+|..-|.++.+... ..||+..+...|+-.+||...+|++-|-+.++.
T Consensus 2 ~~p~~~i~ria~~~G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~h 49 (65)
T smart00803 2 WLPKETIKDVAESLG-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRH 49 (65)
T ss_pred CCCHHHHHHHHHHCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888753 359999999999999999999999999887753
TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=92.21 E-value=0.12 Score=34.28 Aligned_cols=50 Identities=26% Similarity=0.265 Sum_probs=42.1
Q ss_pred ccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 30 AGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 30 agLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
..+.+|+-=|.|++|+. -.+||+++|...|.-++|-+..+|.|.|...|.
T Consensus 16 ~~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ 65 (91)
T COG2036 16 TDLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAE 65 (91)
T ss_pred hhhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888999883 456999999999999999999999999987764
>smart00417 H4 Histone H4
Back Show alignment and domain information
Probab=90.65 E-value=0.34 Score=31.04 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=40.3
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+|..-|.|+++.+ =..|||..+...+..+||.+..+|+..|..++.
T Consensus 14 I~k~~IrRLaRr~-GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ 59 (74)
T smart00417 14 ITKPAIRRLARRG-GVKRISGLIYDETRNVLKSFLENVVRDAVTYTE 59 (74)
T ss_pred CCHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999985 469999999999999999998999999988774
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Back Show alignment and domain information
Probab=90.14 E-value=0.38 Score=31.48 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=40.7
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
+|..-|.|+.+.+. ..|||..+..-+..+||.+..+|+.-|..++.
T Consensus 14 i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~ 59 (85)
T cd00076 14 ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTE 59 (85)
T ss_pred CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999875 89999999999999999999999999887765
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Back Show alignment and domain information
Probab=87.96 E-value=0.69 Score=35.23 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=43.3
Q ss_pred cccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhh
Q 034732 29 KAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAA 80 (85)
Q Consensus 29 ragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~ 80 (85)
-.-..||++||.+.+|......-|.+.|||.++-.+|+...|+=..|...+.
T Consensus 70 ~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Te 121 (236)
T KOG1657|consen 70 FKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTE 121 (236)
T ss_pred hhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456799999999999988889999999999999999997777665554443
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Back Show alignment and domain information
Probab=80.32 E-value=2.3 Score=33.12 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=41.7
Q ss_pred ccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 32 LQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 32 LqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.+|..||.+++|...--.-|++.+||.+|-+-|-+.+|+--.|--.|..|
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~N 158 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEEN 158 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 458999999999988777899999999999999988888766664444433
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 85
d1tzya_ 106
a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus)
1e-24 d1u35c1 106
a.22.1.1 (C:814-919) macro-H2A.1, histone domain {
2e-24 d1f66c_ 103
a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), v
4e-22 d1q9ca_ 172
a.22.1.3 (A:) Histone domain of Son of sevenless p
1e-20 d1jfia_ 66
a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai
9e-12 d1n1jb_ 78
a.22.1.3 (B:) Nuclear transcription factor Y subun
5e-09 d1f1ea_ 151
a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy
6e-05 d1f1ea_ 151
a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy
0.002
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106
Back Hide information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Score = 86.4 bits (214), Expect = 1e-24
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 22 KPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
K SRS +AGLQFPVGR+ R L+KG Y++RVG GAPVYLAAVLEYL AE++ L A
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAA 58
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (213), Expect = 2e-24
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 25 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
SRS KAG+ FPVGR+ RY+KKG R+G GAPVY+AAVLEYL AE++ L + A
Sbjct: 3 SRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAA 57
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Length = 103
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]
Score = 80.3 bits (198), Expect = 4e-22
Identities = 34/57 (59%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 24 VSRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
VSRS +AGLQFPVGRI R+LK S RVG A VY AA+LEYL AEV+ L +
Sbjct: 2 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS 58
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.3 bits (193), Expect = 1e-20
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 20 KKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
+ R + L PV +I LK+ ++ VY+ AVLEY++A+++ L Y
Sbjct: 86 QSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYV 144
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (127), Expect = 9e-12
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYA 79
+FP RI + ++ +V PV ++ LE ++
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVT 48
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (109), Expect = 5e-09
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 35 PVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVV 72
P+ RI + +K + + APV A + E+
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELT 39
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 36.7 bits (85), Expect = 6e-05
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 29 KAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVV 72
G F + R LK+ +R + A ++ E+
Sbjct: 75 YDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELG 117
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 32.8 bits (75), Expect = 0.002
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEV 71
+ P I R ++G +R+ A + + +A V
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYV 39
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 85
d1tzya_ 106
Histone H2A {Chicken (Gallus gallus), erythrocytes
99.97 d1u35c1 106
macro-H2A.1, histone domain {Human (Homo sapiens)
99.96 d1f66c_ 103
Histone H2A {Human (Homo sapiens), variant H2A.Z [
99.95 d1q9ca_ 172
Histone domain of Son of sevenless protein {Human
99.86 d1jfia_ 66
Negative cofactor 2, NC2, alpha chain {Human (Homo
99.11 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
98.23 d1n1jb_ 78
Nuclear transcription factor Y subunit gamma (Nf-Y
97.82 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
96.1 d1htaa_ 68
Archaeal histone {Archaeon Methanothermus fervidus
96.01 d1ku5a_ 66
Archaeal histone {Archaeon (Pyrococcus horikoshii)
95.34 d1n1ja_ 87
Nuclear transcription factor Y subunit beta (Nf-Yb
94.56 d1jfib_ 135
Negative cofactor 2, NC2, beta chain {Human (Homo
91.59
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=99.97 E-value=5.5e-32 Score=180.89 Aligned_cols=62 Identities=63% Similarity=0.904 Sum_probs=59.9
Q ss_pred CCCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 22 KPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 22 k~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
|.+|+|+||||||||+||||+||+++|++||+++|||||||||||||+||||||||+|+||.
T Consensus 1 k~~Srs~rAgL~FpV~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k 62 (106)
T d1tzya_ 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 62 (106)
T ss_dssp CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccccCCccCChHHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 46899999999999999999999999999999999999999999999999999999999975
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-31 Score=177.22 Aligned_cols=61 Identities=57% Similarity=0.841 Sum_probs=58.7
Q ss_pred CCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcccC
Q 034732 24 VSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNFT 84 (85)
Q Consensus 24 ~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~~ 84 (85)
.|+|+||||||||+||||+||+++|++||+++||||||||||||++||||||||+|+++-.
T Consensus 2 ~srs~ragL~FpV~ri~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~ 62 (106)
T d1u35c1 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKK 62 (106)
T ss_dssp CCHHHHHTCSSCHHHHHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccCCcccCHHHHHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999999999999999999999999999853
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]
Probab=99.95 E-value=1.2e-29 Score=168.39 Aligned_cols=61 Identities=56% Similarity=0.654 Sum_probs=57.9
Q ss_pred CCCccccccccccccchhhhhccCCccc-cccCchhHHHHHHHHHHHHHHHHHhhHhhhccc
Q 034732 23 PVSRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPVYLAAVLEYLAAEVVLLVLFYAACNF 83 (85)
Q Consensus 23 ~~s~SsragLqFpV~rv~r~Lr~~~~~~-Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~~ 83 (85)
..|+|+|||||||||||||+|++++|++ ||+++||||||||||||++||||||||+++++-
T Consensus 1 ~~Srs~rAgL~FpVgrv~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~ 62 (103)
T d1f66c_ 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 62 (103)
T ss_dssp CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccccCCcccChHHHHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCC
Confidence 3689999999999999999999999995 699999999999999999999999999999874
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.5e-23 Score=149.12 Aligned_cols=59 Identities=29% Similarity=0.426 Sum_probs=48.7
Q ss_pred CCCccccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 23 PVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 23 ~~s~SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
-.|+|+|+||+|||++|+|+||++ +++||+++|+|||+||||||++||||+|||+|+++
T Consensus 89 ~~srs~ragL~fPV~rv~rlLk~~-~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~ 147 (172)
T d1q9ca_ 89 IEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNI 147 (172)
T ss_dssp HC--------CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCceecHHHHHHHHHhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999997 89999999999999999999999999999999876
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.2e-11 Score=71.58 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=47.7
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+||++||++.||......+|+..|+++++..+||++.++++.|++.|..+
T Consensus 2 ~fP~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~ 51 (66)
T d1jfia_ 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 51 (66)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999998889999999999999999999999999999998765
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.23 E-value=3.4e-07 Score=61.71 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=49.6
Q ss_pred cccccccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 27 SVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 27 SsragLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+.++++.||+++|.|++++. -..||+..|+++|+.++||+..+|++.|.+.|..+
T Consensus 73 ~~~~~~~fp~a~IkRi~k~~-g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~ 127 (151)
T d1f1ea_ 73 EDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADED 127 (151)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCccCHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999974 46899999999999999999999999999998754
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1e-05 Score=48.49 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=45.6
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+|++||.+.+|......+|++.|+++++..+|++..++.+.|++.|..+
T Consensus 1 LP~srVkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~ 49 (78)
T d1n1jb_ 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN 49 (78)
T ss_dssp CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5999999999987777999999999999999999999999999988765
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.10 E-value=0.0022 Score=42.42 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=45.2
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
++|+..|.|.||+..-..||+..|...|..+++++..+|-..|.+.+..+
T Consensus 1 ~lP~a~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~ 50 (151)
T d1f1ea_ 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS 50 (151)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999987777899999999999999999999999998887654
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Probab=96.01 E-value=0.0027 Score=36.49 Aligned_cols=48 Identities=31% Similarity=0.435 Sum_probs=42.7
Q ss_pred ccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 34 FPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 34 FpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
+|.++|.|.+++. -..||+..+...++-++|++..+|.+-|...+..+
T Consensus 4 LP~a~I~ri~k~~-~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~ 51 (68)
T d1htaa_ 4 LPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA 51 (68)
T ss_dssp SCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999986 44799999999999999999999999998877643
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Probab=95.34 E-value=0.0067 Score=34.66 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=42.0
Q ss_pred cccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhc
Q 034732 33 QFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAAC 81 (85)
Q Consensus 33 qFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~ 81 (85)
++|.++|.|.+|++. ..||+..++..+.-.+|.+..++.+-|...|..
T Consensus 2 ~LP~a~I~rI~k~~~-~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~ 49 (66)
T d1ku5a_ 2 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH 49 (66)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999863 479999999999999999999998888777654
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.014 Score=34.97 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=41.7
Q ss_pred ccccccchhhhhccC-CccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 32 LQFPVGRIGRYLKKG-RYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 32 LqFpV~rv~r~Lr~~-~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
|.+|.++|.+.+|+. .-..+|+..|+..++-..|.+...+.+-|.+.|..+
T Consensus 1 l~LP~a~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~ 52 (87)
T d1n1ja_ 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 52 (87)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHhHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999964 456899999999999999977777777776666543
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.063 Score=34.54 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=42.8
Q ss_pred cccccccchhhhhccCCccccccCchhHHHHHHHHHHHHHHHHHhhHhhhcc
Q 034732 31 GLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVVLLVLFYAACN 82 (85)
Q Consensus 31 gLqFpV~rv~r~Lr~~~~~~Rv~a~a~VYLaAVLEYLtaeILELAgn~A~~~ 82 (85)
.|.||.++|.+.++..--..+|+..|+..++-..|.+...|...|...|..+
T Consensus 2 dl~LP~a~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~ 53 (135)
T d1jfib_ 2 DLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS 53 (135)
T ss_dssp CCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999986545799999999999998877777777777766543
