Citrus Sinensis ID: 034745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-----
MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccc
mssqdetsitandatIKDMEGAAVAYVADLFKVPAIFVKAVTdlvdgdkptAEEFMQNLVAVTAALEQSVSQVIDFIngkrfsel
mssqdetsitandatikdMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
***************IKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFIN*******
******T**TANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFS**
*********TANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
*SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query85 2.2.26 [Sep-21-2011]
Q9T0I8267 5'-methylthioadenosine/S- yes no 1.0 0.318 0.741 1e-31
Q7XA67254 5'-methylthioadenosine/S- no no 1.0 0.334 0.694 6e-30
>sp|Q9T0I8|MTN1_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 75/85 (88%)

Query: 1   MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
           MS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL 
Sbjct: 183 MSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLT 242

Query: 61  AVTAALEQSVSQVIDFINGKRFSEL 85
            VTAALE + ++VI+FING+  S+L
Sbjct: 243 VVTAALEGTATKVINFINGRNLSDL 267
Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. Inactive towards S-adenosylhomocysteine (SAH/AdoHcy).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 9
>sp|Q7XA67|MTN2_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 OS=Arabidopsis thaliana GN=MTN2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query85
224078057 263 predicted protein [Populus trichocarpa] 1.0 0.323 0.811 1e-32
224105257 263 predicted protein [Populus trichocarpa] 1.0 0.323 0.8 3e-32
255576741 266 mta/sah nucleosidase, putative [Ricinus 1.0 0.319 0.8 1e-31
217073232 262 unknown [Medicago truncatula] 1.0 0.324 0.788 3e-31
357467481 287 5'-methylthioadenosine/S-adenosylhomocys 1.0 0.296 0.788 3e-31
357467479 261 5'-methylthioadenosine/S-adenosylhomocys 1.0 0.325 0.788 3e-31
359475059 265 PREDICTED: 5'-methylthioadenosine/S-aden 1.0 0.320 0.776 4e-31
359475061 269 PREDICTED: 5'-methylthioadenosine/S-aden 1.0 0.315 0.776 5e-31
7406708 269 putative ripening-related protein [Vitis 1.0 0.315 0.776 5e-31
449524090 266 PREDICTED: 5'-methylthioadenosine/S-aden 1.0 0.319 0.764 8e-31
>gi|224078057|ref|XP_002305481.1| predicted protein [Populus trichocarpa] gi|118481001|gb|ABK92454.1| unknown [Populus trichocarpa] gi|222848445|gb|EEE85992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 78/85 (91%)

Query: 1   MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
           MS QDE SI ANDAT+KDMEGAAVAYVADL KVPAIF+KAVTD+VDGDKPTAEEF+QNL 
Sbjct: 179 MSPQDEASIVANDATVKDMEGAAVAYVADLLKVPAIFIKAVTDIVDGDKPTAEEFLQNLA 238

Query: 61  AVTAALEQSVSQVIDFINGKRFSEL 85
           AVTAAL+Q+V+QV+DFI+GK  SEL
Sbjct: 239 AVTAALDQAVAQVVDFISGKCLSEL 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105257|ref|XP_002313743.1| predicted protein [Populus trichocarpa] gi|222850151|gb|EEE87698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576741|ref|XP_002529258.1| mta/sah nucleosidase, putative [Ricinus communis] gi|223531294|gb|EEF33136.1| mta/sah nucleosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217073232|gb|ACJ84975.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467481|ref|XP_003604025.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|355493073|gb|AES74276.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467479|ref|XP_003604024.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|355493072|gb|AES74275.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|388498734|gb|AFK37433.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359475059|ref|XP_003631578.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 isoform 2 [Vitis vinifera] gi|297744678|emb|CBI37940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475061|ref|XP_002273006.2| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|7406708|emb|CAB85633.1| putative ripening-related protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|449524090|ref|XP_004169056.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query85
TAIR|locus:2141806267 MTN1 "methylthioadenosine nucl 1.0 0.318 0.741 2.1e-29
TAIR|locus:2116925254 MTN2 [Arabidopsis thaliana (ta 1.0 0.334 0.694 6.4e-28
TAIR|locus:2141806 MTN1 "methylthioadenosine nucleosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 63/85 (74%), Positives = 75/85 (88%)

Query:     1 MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
             MS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL 
Sbjct:   183 MSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLT 242

Query:    61 AVTAALEQSVSQVIDFINGKRFSEL 85
              VTAALE + ++VI+FING+  S+L
Sbjct:   243 VVTAALEGTATKVINFINGRNLSDL 267
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009116 "nucleoside metabolic process" evidence=ISS
GO:0008930 "methylthioadenosine nucleosidase activity" evidence=IDA;NAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000003 "reproduction" evidence=IGI
GO:0001944 "vasculature development" evidence=IGI
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2116925 MTN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9T0I8MTN1_ARATH3, ., 2, ., 2, ., 90.74111.00.3183yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV1398
SubName- Full=Putative uncharacterized protein; (263 aa)
(Populus trichocarpa)
Predicted Functional Partners:
ACS3
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (467 aa)
     •• 0.901
ACS4
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (468 aa)
     •• 0.901
ACS8
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (449 aa)
     •• 0.901
ACS7
1-aminocyclopropane-1-carboxylate (480 aa)
     •• 0.900
ACS1
SubName- Full=Putative uncharacterized protein; (481 aa)
     •• 0.900
ACS6
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (440 aa)
     •• 0.900
ACS2
1-aminocyclopropane-1-carboxylate (486 aa)
     •• 0.900
ACS5
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (446 aa)
     •• 0.900
grail3.0009003101
spermidine synthase (335 aa)
     •• 0.900
fgenesh4_pg.C_LG_XII000148
spermidine synthase (EC-2.5.1.16) (347 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query85
PLN02584249 PLN02584, PLN02584, 5'-methylthioadenosine nucleos 2e-46
COG0775234 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide 1e-05
pfam01048232 pfam01048, PNP_UDP_1, Phosphorylase superfamily 2e-05
PRK05634185 PRK05634, PRK05634, nucleosidase; Provisional 1e-04
PRK05584230 PRK05584, PRK05584, 5'-methylthioadenosine/S-adeno 0.001
>gnl|CDD|178196 PLN02584, PLN02584, 5'-methylthioadenosine nucleosidase Back     alignment and domain information 
 Score =  147 bits (374), Expect = 2e-46
 Identities = 64/85 (75%), Positives = 74/85 (87%)

Query: 1   MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
           M+ QDE SI ANDAT+KDMEGAAVAYVADL KVPAIFVKAVTD+VDGDKPTAEEF++NL 
Sbjct: 165 MTEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLS 224

Query: 61  AVTAALEQSVSQVIDFINGKRFSEL 85
           A  AAL+ +V +V+DFI+GK  SEL
Sbjct: 225 AAAAALQGAVPKVLDFISGKCLSEL 249

Length = 249
>gnl|CDD|223846 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily Back     alignment and domain information
>gnl|CDD|235538 PRK05634, PRK05634, nucleosidase; Provisional Back     alignment and domain information
>gnl|CDD|180148 PRK05584, PRK05584, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 85
PLN02584249 5'-methylthioadenosine nucleosidase 99.86
PRK14697233 bifunctional 5'-methylthioadenosine/S-adenosylhomo 99.83
PRK06714236 S-adenosylhomocysteine nucleosidase; Validated 99.82
PRK07164218 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.82
PRK06698 459 bifunctional 5'-methylthioadenosine/S-adenosylhomo 99.79
PRK06026212 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.78
TIGR01705212 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh 99.77
TIGR01704228 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho 99.77
COG0775234 Pfs Nucleoside phosphorylase [Nucleotide transport 99.74
PRK05634185 nucleosidase; Provisional 99.74
PRK05584230 5'-methylthioadenosine/S-adenosylhomocysteine nucl 99.66
PRK08236212 hypothetical protein; Provisional 99.66
PRK07077238 hypothetical protein; Provisional 99.66
TIGR03664222 fut_nucase futalosine nucleosidase. This enzyme ca 99.65
PF01048234 PNP_UDP_1: Phosphorylase superfamily; InterPro: IP 99.56
TIGR03468212 HpnG hopanoid-associated phosphorylase. The sequen 99.56
TIGR01697248 PNPH-PUNA-XAPA inosine guanosine and xanthosine ph 99.56
PRK08666261 5'-methylthioadenosine phosphorylase; Validated 99.54
TIGR01694241 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase 99.54
TIGR01700249 PNPH purine nucleoside phosphorylase I, inosine an 99.51
PRK08202272 purine nucleoside phosphorylase; Provisional 99.51
PRK13374233 purine nucleoside phosphorylase; Provisional 99.42
PRK05819235 deoD purine nucleoside phosphorylase; Reviewed 99.4
TIGR00107232 deoD purine-nucleoside phosphorylase, family 1 (de 99.37
PRK07115258 AMP nucleosidase; Provisional 99.36
TIGR01721266 AMN-like AMP nucleosidase, putative. The sequences 99.28
TIGR01699248 XAPA xanthosine phosphorylase. (TIGR01698, TIGR017 99.28
TIGR01717477 AMP-nucleosdse AMP nucleosidase. This model repres 99.23
PRK08292489 AMP nucleosidase; Provisional 99.21
PRK09136245 5'-methylthioadenosine phosphorylase; Validated 99.19
TIGR01719287 euk_UDPppase uridine phosphorylase. This model rep 98.98
TIGR01718245 Uridine-psphlse uridine phosphorylase. Sequences f 98.66
PRK11178251 uridine phosphorylase; Provisional 98.63
COG0813236 DeoD Purine-nucleoside phosphorylase [Nucleotide t 97.68
PRK07432290 5'-methylthioadenosine phosphorylase; Provisional 97.34
PRK08931289 5'-methylthioadenosine phosphorylase; Provisional 97.32
PRK08564267 5'-methylthioadenosine phosphorylase II; Reviewed 97.14
PRK07823264 5'-methylthioadenosine phosphorylase; Validated 97.13
TIGR01698237 PUNP purine nucleotide phosphorylase. methylthioad 96.86
COG2820248 Udp Uridine phosphorylase [Nucleotide transport an 96.23
COG0005262 Pnp Purine nucleoside phosphorylase [Nucleotide tr 95.15
KOG3984286 consensus Purine nucleoside phosphorylase [Nucleot 83.97
KOG3985283 consensus Methylthioadenosine phosphorylase MTAP [ 83.72
>PLN02584 5'-methylthioadenosine nucleosidase Back     alignment and domain information 
Probab=99.86  E-value=3.6e-21  Score=138.70  Aligned_cols=84  Identities=75%  Similarity=1.058  Sum_probs=76.4

Q ss_pred             CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 034745            2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKR   81 (85)
Q Consensus         2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~   81 (85)
                      ++++.+.+++++++++|||+||+||+|+.+|+||++||+|||.++++.+++++|.+++..+++.+.+.+..+++.+++++
T Consensus       166 ~~~~~~~~~~~~a~~vDME~aAia~va~~~gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~~~  245 (249)
T PLN02584        166 TEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISGKC  245 (249)
T ss_pred             CHHHHHHHHHcCCcEEechHHHHHHHHHHhCCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            34556677788999999999999999999999999999999999876557999999999999999999999999999999


Q ss_pred             ccCC
Q 034745           82 FSEL   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      .++|
T Consensus       246 ~~~~  249 (249)
T PLN02584        246 LSEL  249 (249)
T ss_pred             cccC
Confidence            9886

>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative Back     alignment and domain information
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK05634 nucleosidase; Provisional Back     alignment and domain information
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK08236 hypothetical protein; Provisional Back     alignment and domain information
>PRK07077 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03664 fut_nucase futalosine nucleosidase Back     alignment and domain information
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2 Back     alignment and domain information
>TIGR03468 HpnG hopanoid-associated phosphorylase Back     alignment and domain information
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family Back     alignment and domain information
>PRK08666 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>PRK08202 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK13374 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD) Back     alignment and domain information
>PRK07115 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR01721 AMN-like AMP nucleosidase, putative Back     alignment and domain information
>TIGR01699 XAPA xanthosine phosphorylase Back     alignment and domain information
>TIGR01717 AMP-nucleosdse AMP nucleosidase Back     alignment and domain information
>PRK08292 AMP nucleosidase; Provisional Back     alignment and domain information
>PRK09136 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01719 euk_UDPppase uridine phosphorylase Back     alignment and domain information
>TIGR01718 Uridine-psphlse uridine phosphorylase Back     alignment and domain information
>PRK11178 uridine phosphorylase; Provisional Back     alignment and domain information
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>PRK07823 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01698 PUNP purine nucleotide phosphorylase Back     alignment and domain information
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query85
2h8g_A267 5'-Methylthioadenosine Nucleosidase From Arabidopsi 9e-33
3bsf_A254 Crystal Structure Of The MtaSAH NUCLEOSIDASE Length 5e-31
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis Thaliana Length = 267 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 1   MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
           MS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL 
Sbjct: 183 MSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLT 242
Query: 61  AVTAALEQSVSQVIDFINGKRFSEL 85
            VTAALE + ++VI+FING+  S+L
Sbjct: 243 VVTAALEGTATKVINFINGRNLSDL 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query85
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 7e-22
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 9e-22
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 1e-12
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 3e-12
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 1e-11
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 1e-11
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 2e-11
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 2e-10
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 8e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 8e-05
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 9e-05
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 2e-04
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 3e-04
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 5e-04
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Length = 267 Back     alignment and structure
 Score = 84.8 bits (209), Expect = 7e-22
 Identities = 63/85 (74%), Positives = 75/85 (88%)

Query: 1   MSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLV 60
           MS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL 
Sbjct: 183 MSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLT 242

Query: 61  AVTAALEQSVSQVIDFINGKRFSEL 85
            VTAALE + ++VI+FING+  S+L
Sbjct: 243 VVTAALEGTATKVINFINGRNLSDL 267
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Length = 254 Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Length = 230 Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} Length = 231 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} Length = 233 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} PDB: 3nm5_A* 3nm4_A* Length = 230 Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* Length = 234 Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Length = 230 Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Length = 253 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Length = 484 Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* Length = 235 Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} PDB: 3tl6_A* Length = 242 Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query85
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 99.82
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 99.81
4g41_A236 MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, 99.77
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 99.73
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 99.71
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 99.71
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 99.7
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 99.68
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 99.67
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 99.6
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 99.55
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 99.55
2b94_A267 Purine nucleoside phosphorylase; SGPP, structural 99.54
1odk_A235 Purine nucleoside phosphorylase; alpha-beta protei 99.51
1je0_A236 MTAP;, 5'-methylthioadenosine phosphorylase; alpha 99.51
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 99.5
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 99.5
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 99.49
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 99.47
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 99.47
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 99.46
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 99.44
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 99.42
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 99.41
3p0f_A297 Uridine phosphorylase 2; transferase; HET: BAU; 1. 99.41
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 99.41
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 99.4
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 99.4
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 99.39
1ybf_A268 AMP nucleosidase; structural genomics, protein str 99.36
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 99.35
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 99.35
3euf_A328 Uridine phosphorylase 1; nucleoside phosphorylase, 99.34
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 99.16
3ddo_A253 Urdpase, upase, uridine phosphorylase; transferase 99.14
3mb8_A279 Purine nucleoside phosphorylase; PNP, immucillin H 99.05
3phc_A275 Purine nucleoside phosphorylase; PNP,immucillin, t 99.02
3qpb_A282 Uridine phosphorylase; hexamer, NP-I superfamily, 98.84
3bje_A349 Nucleoside phosphorylase, putative; uridine phosph 98.83
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Back     alignment and structure
Probab=99.82  E-value=1e-19  Score=130.02  Aligned_cols=84  Identities=74%  Similarity=1.070  Sum_probs=75.7

Q ss_pred             CHHHHHHHHhcCCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 034745            2 SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKR   81 (85)
Q Consensus         2 ~~~~~~~~~~~~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~~~~~f~~~~~~~s~~~~~~v~~~l~~l~~~~   81 (85)
                      ++++.+.++++++++||||+||++++|+.+++||++||+|||++++...+.++|.+.+..++.++.+++.++|+.+.+++
T Consensus       184 ~~~~~~~l~~~ga~~veME~aa~a~va~~~gip~~~Ir~ISD~a~~~~~s~~~~~~~~~~aa~~~~~~l~~~l~~l~~~~  263 (267)
T 2h8g_A          184 STQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRN  263 (267)
T ss_dssp             CHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEEEEETTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCeEEeccHHHHHHHHHHcCCCEEEEEEEEECccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45566677888999999999999999999999999999999999876545788888888899999999999999999999


Q ss_pred             ccCC
Q 034745           82 FSEL   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      +++|
T Consensus       264 ~~~~  267 (267)
T 2h8g_A          264 LSDL  267 (267)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            9987
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Back     alignment and structure
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes} Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A* Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1 Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A* Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Back     alignment and structure
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Back     alignment and structure
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Back     alignment and structure
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Back     alignment and structure
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Back     alignment and structure
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0 Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Back     alignment and structure
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Back     alignment and structure
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Back     alignment and structure
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A* Back     alignment and structure
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A* Back     alignment and structure
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ... Back     alignment and structure
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii} Back     alignment and structure
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A* Back     alignment and structure
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 85
d1jysa_230 c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhom 6e-08
d1t8sa_477 c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [ 2e-06
d1odka_234 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 3e-06
d1vhwa_237 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 3e-06
d2ac7a1231 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase 2e-05
d1rxya_250 c.56.2.1 (A:) Uridine phosphorylase {Escherichia c 4e-05
d1je0a_234 c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos 6e-05
d1ybfa_246 c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetai 2e-04
d1q1ga_243 c.56.2.1 (A:) Putative uridine phosphorylase {Plas 7e-04
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 6e-08
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 12  NDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAAL 66
             A   +ME  A+A+V   F VP + V+A++D+ D     + +    + A  ++L
Sbjct: 166 PQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSL 220
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Length = 477 Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Length = 237 Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Length = 231 Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 234 Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 246 Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Length = 243 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query85
d1jysa_230 5'-Methylthioadenosine/S-Adenosylhomocysteine nucl 99.72
d1vhwa_237 Purine nucleoside phosphorylase, PNP {Vibrio chole 99.52
d1odka_234 Purine nucleoside phosphorylase, PNP {Thermus ther 99.51
d1je0a_234 5'-deoxy-5'-methylthioadenosine phosphorylase {Arc 99.45
d2ac7a1231 Purine nucleoside phosphorylase, PNP {Bacillus ant 99.45
d1rxya_250 Uridine phosphorylase {Escherichia coli [TaxId: 56 99.43
d1ybfa_246 AMP nucleosidase {Bacteroides thetaiotaomicron [Ta 99.42
d1t8sa_477 AMP nucleosidase {Escherichia coli [TaxId: 562]} 99.37
d1q1ga_243 Putative uridine phosphorylase {Plasmodium falcipa 99.3
d1qe5a_266 Purine nucleoside phosphorylase, PNP {Cellulomonas 97.83
d1cb0a_273 5'-deoxy-5'-methylthioadenosine phosphorylase {Hum 97.41
d1v4na_266 5'-deoxy-5'-methylthioadenosine phosphorylase {Sul 97.06
d1g2oa_262 Purine nucleoside phosphorylase, PNP {Mycobacteriu 97.06
d1vmka_265 Purine nucleoside phosphorylase, PNP {Thermotoga m 97.04
d3pnpa_284 Purine nucleoside phosphorylase, PNP {Cow (Bos tau 96.81
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=9.7e-18  Score=114.43  Aligned_cols=71  Identities=23%  Similarity=0.316  Sum_probs=56.8

Q ss_pred             HHHHHHhc-CCcEEeccHHHHHHHHHhcCCCeEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034745            5 DETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFIN   78 (85)
Q Consensus         5 ~~~~~~~~-~a~~vDME~aAiA~vc~~~~vPf~~iR~ISD~a~~~~~-~~~~f~~~~~~~s~~~~~~v~~~l~~l~   78 (85)
                      +.++.+++ +++++|||+||++++|+.+++||++||+|||+++++.. +|++|.+.   ++.++..++.++|++|+
T Consensus       158 ~~~l~~~~~~a~~vdME~aa~a~va~~~~ip~~~ir~ISD~~~~~~~~~~~~~~~~---a~~~~~~~i~~~i~~l~  230 (230)
T d1jysa_         158 LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAV---AAKQSSLMVESLVQKLA  230 (230)
T ss_dssp             HHHHHHHCTTEEEEESSHHHHHHHHHHTTCCEEEEEEEEEETTC----CHHHHHHH---HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccceeeechHHHHHHHHHHcCCCEEEEEEEEcCCCCccccCHHHHHHH---HHHHHHHHHHHHHHHhC
Confidence            44555665 79999999999999999999999999999999998776 67776655   45566889999998874
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Back     information, alignment and structure
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure