Citrus Sinensis ID: 034783

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFlvpetkgrtLEEIQASITKLSRR
Flexible Loop (DISEMBL)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFlvpetkgrtleeiqasitklsrr
Low Complexity Region (SEG)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Disordered region (IsUnstruct)
***IFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKG****************
Disordered Region (DISOPRED)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQA********
Disordered Region (DISEMBL)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ*********
Disordered Region (DISPRO)
**EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASIT*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q3ECP7	470	Sugar transporter ERD6-li	yes	no	0.927	0.163	0.597	5e-20
Q94KE0	470	Sugar transporter ERD6-li	no	no	0.951	0.168	0.531	6e-20
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.951	0.163	0.531	2e-19
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.903	0.159	0.546	2e-18
O04036	496	Sugar transporter ERD6 OS	no	no	0.903	0.151	0.56	4e-18
Q4F7G0	462	Sugar transporter ERD6-li	no	no	0.975	0.175	0.518	6e-17
P93051	463	Sugar transporter ERD6-li	no	no	0.903	0.161	0.506	1e-16
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.903	0.154	0.493	3e-16
Q9LTP6	488	Putative sugar transporte	no	no	0.951	0.161	0.468	4e-16
Q93YP9	488	Sugar transporter ERD6-li	no	no	0.903	0.153	0.48	6e-16

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPI++KG AGSLV  +    +W I+FTF+F+M W+  GTF +F  +C A V FV  
Sbjct: 389 MSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAK 448

Query: 61  LVPETKGRTLEEIQASI 77
           LVPETKGRTLEEIQ SI
Sbjct: 449 LVPETKGRTLEEIQYSI 465

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 59/79 (74%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFP+N+K  AG+LV   +    W + F ++FM+EW+ +GTF IF+ IC AG+ F+  
Sbjct: 389 MSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFIYA 448

Query: 61  LVPETKGRTLEEIQASITK 79
           +VPETKGRTLE+IQAS+T 
Sbjct: 449 MVPETKGRTLEDIQASLTD 467

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 59/79 (74%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPIN+KG+AGSLV+ ++    W +++TF+F+M WS  GTF ++    AA + FV  
Sbjct: 402 MSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAK 461

Query: 61  LVPETKGRTLEEIQASITK 79
           +VPETKG+TLEEIQA I +
Sbjct: 462 MVPETKGKTLEEIQACIRR 480

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 55/75 (73%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPIN+KG AG LV  ++   +W ++FTF+F+M WS  GTF ++  +C   + F+  
Sbjct: 393 MSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAK 452

Query: 61  LVPETKGRTLEEIQA 75
           LVPETKGRTLEEIQA
Sbjct: 453 LVPETKGRTLEEIQA 467

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 57/75 (76%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           MAEIFP+N+K  AG+LV   +    W IT+TF+FM+EW+ +G F IF ++ A+ + F+ F
Sbjct: 415 MAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYF 474

Query: 61  LVPETKGRTLEEIQA 75
           LVPETKGR+LEEIQA
Sbjct: 475 LVPETKGRSLEEIQA 489

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFP+N+K  AGSLV   +   NW I ++F+FM++WS +GT+ IF  +    + F+  
Sbjct: 382 MSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSLVTIVFIWT 441

Query: 61  LVPETKGRTLEEIQASITKLS 81
           LVPETKGRTLEEIQ S+ +LS
Sbjct: 442 LVPETKGRTLEEIQTSLVRLS 462

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 54/75 (72%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPIN+KG+AG +   ++    W +++TF+F+M WS  GTF I+  I A  + FV  
Sbjct: 385 MSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIA 444

Query: 61  LVPETKGRTLEEIQA 75
           +VPETKG+TLE+IQA
Sbjct: 445 IVPETKGKTLEQIQA 459

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 54/75 (72%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EI P+N+KGLAGS+    +   +W IT T + ++ WS  GTF+++ ++CA  V FVT 
Sbjct: 410 MSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTL 469

Query: 61  LVPETKGRTLEEIQA 75
            VPETKG+TLEE+Q+
Sbjct: 470 WVPETKGKTLEELQS 484

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           ++E+ PIN+KG AG+L        NW +++TF+F+ +WS +G F I+ +I   G+ FV  
Sbjct: 410 ISEMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMK 469

Query: 61  LVPETKGRTLEEIQASITK 79
           +VPET+GR+LEEIQA+IT+
Sbjct: 470 MVPETRGRSLEEIQAAITR 488

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 55/75 (73%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EI P+N+KGLAGS+   ++  ++W +T T + ++ WS  GTF+++ ++C   V FV+ 
Sbjct: 411 MSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSL 470

Query: 61  LVPETKGRTLEEIQA 75
            VPETKG+TLEEIQA
Sbjct: 471 WVPETKGKTLEEIQA 485

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
225451069	488	PREDICTED: putative ERD6-like transporte	1.0	0.170	0.602	8e-20
255542516	476	sugar transporter, putative [Ricinus com	0.939	0.163	0.589	8e-20
298205031	517	unnamed protein product [Vitis vinifera]	1.0	0.160	0.602	8e-20
359487967	1179	PREDICTED: uncharacterized protein LOC10	0.939	0.066	0.641	2e-19
298205019	874	unnamed protein product [Vitis vinifera]	0.939	0.089	0.564	3e-19
298205021	490	unnamed protein product [Vitis vinifera]	0.939	0.159	0.641	3e-19
224125374	442	predicted protein [Populus trichocarpa]	1.0	0.187	0.578	3e-19
310877874	473	putative ERD6-like transporter [Vitis vi	0.939	0.164	0.564	3e-19
255542520	488	sugar transporter, putative [Ricinus com	0.975	0.165	0.592	6e-19
310877862	483	putative ERD6-like transporter [Vitis vi	0.987	0.169	0.573	6e-19

>gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPINMKG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  
Sbjct: 400 MSEIFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICGITVLFVAK 459

Query: 61  LVPETKGRTLEEIQASITKLSRR 83
           LVPETKGRTLEEIQAS+  LS +
Sbjct: 460 LVPETKGRTLEEIQASMNPLSAK 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 62/78 (79%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+E+FPIN+KG+AGSLVI I+   +W +++TF+FMMEWS +GTF I+  +CA  V F+  
Sbjct: 395 MSEVFPINIKGVAGSLVIAINWTCSWVVSYTFNFMMEWSSSGTFFIYAGVCALAVLFIAK 454

Query: 61  LVPETKGRTLEEIQASIT 78
           +VPETKGR LEE+QASI 
Sbjct: 455 VVPETKGRMLEELQASIA 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 60/83 (72%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPINMKG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  
Sbjct: 429 MSEIFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICGITVLFVAK 488

Query: 61  LVPETKGRTLEEIQASITKLSRR 83
           LVPETKGRTLEEIQAS+  LS +
Sbjct: 489 LVPETKGRTLEEIQASMNPLSAK 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487967|ref|XP_002263811.2| PREDICTED: uncharacterized protein LOC100264207 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 58/78 (74%)

Query: 1    MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
            M+EIFPIN+KG AGSLV F+    +W +  TF+F+ EWS  GTF IF  IC  GV F+  
Sbjct: 1098 MSEIFPINIKGPAGSLVTFVCWFGSWLVACTFYFLFEWSSAGTFFIFSSICGLGVLFIAK 1157

Query: 61   LVPETKGRTLEEIQASIT 78
            LVPETKGRTLEEIQASIT
Sbjct: 1158 LVPETKGRTLEEIQASIT 1175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205019|emb|CBI34326.3| unnamed protein product [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFP+++KG AGSLV  ++ C +W +++TF+F+M WS  GTF  +  +CAA V F+  
Sbjct: 797 MSEIFPLHIKGTAGSLVTLVNWCGSWAVSYTFNFLMNWSSHGTFFGYAFVCAAAVVFIVM 856

Query: 61  LVPETKGRTLEEIQASIT 78
           LVPETKGRTLEEIQAS+ 
Sbjct: 857 LVPETKGRTLEEIQASMN 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205021|emb|CBI34328.3| unnamed protein product [Vitis vinifera] gi|310877870|gb|ADP37166.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 58/78 (74%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFPIN+KG AGSLV F+    +W +  TF+F+ EWS  GTF IF  IC  GV F+  
Sbjct: 409 MSEIFPINIKGPAGSLVTFVCWFGSWLVACTFYFLFEWSSAGTFFIFSSICGLGVLFIAK 468

Query: 61  LVPETKGRTLEEIQASIT 78
           LVPETKGRTLEEIQASIT
Sbjct: 469 LVPETKGRTLEEIQASIT 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+E+FPIN KG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  
Sbjct: 359 MSEVFPINTKGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICGLTVLFVAK 418

Query: 61  LVPETKGRTLEEIQASITKLSRR 83
           LVPETKGRTLEEIQAS+  LS +
Sbjct: 419 LVPETKGRTLEEIQASMNPLSAK 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877874|gb|ADP37168.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+EIFP+++KG AGSLV  ++ C +W +++TF+F+M WS  GTF  +  +CAA V F+  
Sbjct: 396 MSEIFPLHIKGTAGSLVTLVNWCGSWAVSYTFNFLMNWSSHGTFFGYAFVCAAAVVFIVM 455

Query: 61  LVPETKGRTLEEIQASIT 78
           LVPETKGRTLEEIQAS+ 
Sbjct: 456 LVPETKGRTLEEIQASMN 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 58/81 (71%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           M+E+FPINMKG AGSLV  +    +W I++ F+F+M WS  GTF IF  IC   V FV  
Sbjct: 405 MSEVFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMTWSSAGTFLIFSSICGLTVLFVAK 464

Query: 61  LVPETKGRTLEEIQASITKLS 81
           LVPETKGRTLEEIQAS+  +S
Sbjct: 465 LVPETKGRTLEEIQASMNPVS 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877862|gb|ADP37162.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 61/82 (74%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           MAEI+PIN+KG+AGSLVIF +   +W +T+TF++M +WS TGTF  + +I  + V F   
Sbjct: 402 MAEIYPINIKGVAGSLVIFSNWFFSWVVTYTFNYMFDWSSTGTFFFYSIISGSTVLFTAK 461

Query: 61  LVPETKGRTLEEIQASITKLSR 82
           LVPETKGR LEEIQAS+T   R
Sbjct: 462 LVPETKGRKLEEIQASMTHFLR 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.927	0.163	0.597	3.3e-19
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.951	0.163	0.531	7.5e-19
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.903	0.159	0.546	2.4e-18
TAIR|locus:2036084	496	ERD6 "EARLY RESPONSE TO DEHYDR	0.903	0.151	0.56	4.7e-18
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.975	0.175	0.518	1.4e-17
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.927	0.166	0.493	1.7e-16
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.903	0.153	0.48	1.9e-16
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.903	0.154	0.493	2.5e-16
TAIR|locus:2036039	464	AT1G08890 [Arabidopsis thalian	0.975	0.174	0.518	2.8e-16
TAIR|locus:2092379	488	AT3G20460 [Arabidopsis thalian	0.951	0.161	0.468	6.8e-16

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EIFPI++KG AGSLV  +    +W I+FTF+F+M W+  GTF +F  +C A V FV  
Sbjct:   389 MSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAK 448

Query:    61 LVPETKGRTLEEIQASI 77
             LVPETKGRTLEEIQ SI
Sbjct:   449 LVPETKGRTLEEIQYSI 465

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 7.5e-19, P = 7.5e-19
 Identities = 42/79 (53%), Positives = 59/79 (74%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EIFPIN+KG+AGSLV+ ++    W +++TF+F+M WS  GTF ++    AA + FV  
Sbjct:   402 MSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAK 461

Query:    61 LVPETKGRTLEEIQASITK 79
             +VPETKG+TLEEIQA I +
Sbjct:   462 MVPETKGKTLEEIQACIRR 480

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 41/75 (54%), Positives = 55/75 (73%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EIFPIN+KG AG LV  ++   +W ++FTF+F+M WS  GTF ++  +C   + F+  
Sbjct:   393 MSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAK 452

Query:    61 LVPETKGRTLEEIQA 75
             LVPETKGRTLEEIQA
Sbjct:   453 LVPETKGRTLEEIQA 467

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 42/75 (56%), Positives = 57/75 (76%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             MAEIFP+N+K  AG+LV   +    W IT+TF+FM+EW+ +G F IF ++ A+ + F+ F
Sbjct:   415 MAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYF 474

Query:    61 LVPETKGRTLEEIQA 75
             LVPETKGR+LEEIQA
Sbjct:   475 LVPETKGRSLEEIQA 489

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EIFP+N+K  AGSLV   +   NW I ++F+FM++WS +GT+ IF  +    + F+  
Sbjct:   382 MSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSLVTIVFIWT 441

Query:    61 LVPETKGRTLEEIQASITKLS 81
             LVPETKGRTLEEIQ S+ +LS
Sbjct:   442 LVPETKGRTLEEIQTSLVRLS 462

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EIFPIN+KG+AG +   ++    W +++TF+F+M WS  GTF I+  I A  + FV  
Sbjct:   385 MSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIA 444

Query:    61 LVPETKGRTLEEIQASI 77
             +VPETKG+TLE+IQA +
Sbjct:   445 IVPETKGKTLEQIQAIV 461

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 36/75 (48%), Positives = 55/75 (73%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EI P+N+KGLAGS+   ++  ++W +T T + ++ WS  GTF+++ ++C   V FV+ 
Sbjct:   411 MSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSL 470

Query:    61 LVPETKGRTLEEIQA 75
              VPETKG+TLEEIQA
Sbjct:   471 WVPETKGKTLEEIQA 485

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 37/75 (49%), Positives = 54/75 (72%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+EI P+N+KGLAGS+    +   +W IT T + ++ WS  GTF+++ ++CA  V FVT 
Sbjct:   410 MSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTL 469

Query:    61 LVPETKGRTLEEIQA 75
              VPETKG+TLEE+Q+
Sbjct:   470 WVPETKGKTLEELQS 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 42/81 (51%), Positives = 56/81 (69%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             M+E+FP+N+K  AGSLV   +   +W I F+F+FMM+WS  GT+ IF  +      FV  
Sbjct:   384 MSEVFPVNVKITAGSLVTVSNWFFSWIIIFSFNFMMQWSAFGTYFIFAGVSLMSFVFVWT 443

Query:    61 LVPETKGRTLEEIQASITKLS 81
             LVPETKGRTLE+IQ S+ +LS
Sbjct:   444 LVPETKGRTLEDIQQSLGQLS 464

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query:     1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
             ++E+ PIN+KG AG+L        NW +++TF+F+ +WS +G F I+ +I   G+ FV  
Sbjct:   410 ISEMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMK 469

Query:    61 LVPETKGRTLEEIQASITK 79
             +VPET+GR+LEEIQA+IT+
Sbjct:   470 MVPETRGRSLEEIQAAITR 488

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-10
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-09
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-07
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.001

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFW-VICAAGVAFVT 59
           ++EIFP++++    S+ +  +   N+ + F F  M+E    G   IF+  +   G+ FV 
Sbjct: 408 VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467

Query: 60  FLVPETKGRTLEEI 73
           F +PETKGRTLEEI
Sbjct: 468 FFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTF 60
           ++E+FP+ ++  A ++    +   N+ I F F  +        F +F  +    + FV F
Sbjct: 373 VSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFF 432

Query: 61  LVPETKGRTLEEIQA 75
            VPETKGRTLEEI  
Sbjct: 433 FVPETKGRTLEEIDE 447

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTG-------TFSIFWVICAA 53
           ++EIFP  ++G A ++ +      N+ +++TF  M + S          ++ I+  +   
Sbjct: 389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448

Query: 54  GVAFVTFLVPETKGRTLEEIQASITKLSR 82
              F+   VPETKG+TLEE++A     ++
Sbjct: 449 AALFMWKFVPETKGKTLEEMEALWEPETK 477

Length = 479

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 46  IFWVICAAGVAFVTFLVPETKGRTLEEI 73
           IF +    G+ F T L+PETKG++LEE+
Sbjct: 473 IFALFMFLGILF-TLLIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG0569	485	consensus Permease of the major facilitator superf	99.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
KOG0254	513	consensus Predicted transporter (major facilitator	99.39
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.39
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.02
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.98
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.9
TIGR00898	505	2A0119 cation transport protein.	98.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.81
PRK10489	417	enterobactin exporter EntS; Provisional	98.68
PRK10642	490	proline/glycine betaine transporter; Provisional	98.57
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.42
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.31
TIGR00893	399	2A0114 d-galactonate transporter.	98.28
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.2
PRK11663	434	regulatory protein UhpC; Provisional	98.17
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.14
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.13
PRK03545	390	putative arabinose transporter; Provisional	98.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.1
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.09
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.09
PRK09952	438	shikimate transporter; Provisional	98.08
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.98
PLN00028	476	nitrate transmembrane transporter; Provisional	97.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.98
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.96
TIGR00895	398	2A0115 benzoate transport.	97.95
TIGR00901	356	2A0125 AmpG-related permease.	97.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.94
PRK10091	382	MFS transport protein AraJ; Provisional	97.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.93
PRK11663	434	regulatory protein UhpC; Provisional	97.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.91
PRK10054	395	putative transporter; Provisional	97.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.86
PRK09874	408	drug efflux system protein MdtG; Provisional	97.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.78
KOG2532	466	consensus Permease of the major facilitator superf	97.76
PRK12307	426	putative sialic acid transporter; Provisional	97.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.73
TIGR00900	365	2A0121 H+ Antiporter protein.	97.73
TIGR00891	405	2A0112 putative sialic acid transporter.	97.7
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.68
TIGR00893	399	2A0114 d-galactonate transporter.	97.66
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.59
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.58
PRK12382	392	putative transporter; Provisional	97.54
PRK05122	399	major facilitator superfamily transporter; Provisi	97.53
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.52
PRK09705	393	cynX putative cyanate transporter; Provisional	97.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.5
TIGR00898	505	2A0119 cation transport protein.	97.48
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.48
PRK12307	426	putative sialic acid transporter; Provisional	97.47
PRK10504	471	putative transporter; Provisional	97.46
KOG0569	485	consensus Permease of the major facilitator superf	97.45
PRK11010	491	ampG muropeptide transporter; Validated	97.45
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.44
PRK15075	434	citrate-proton symporter; Provisional	97.43
PRK11043	401	putative transporter; Provisional	97.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.4
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.39
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.38
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.32
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.3
PRK03893	496	putative sialic acid transporter; Provisional	97.3
PRK09528	420	lacY galactoside permease; Reviewed	97.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.29
PRK10489	417	enterobactin exporter EntS; Provisional	97.26
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.24
PRK10642	490	proline/glycine betaine transporter; Provisional	97.22
PRK11902	402	ampG muropeptide transporter; Reviewed	97.2
PRK15011	393	sugar efflux transporter B; Provisional	97.2
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.19
TIGR00805	633	oat sodium-independent organic anion transporter.	97.18
PRK03699	394	putative transporter; Provisional	97.17
PTZ00207	591	hypothetical protein; Provisional	97.16
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.13
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.11
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.1
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.06
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.04
PRK03893	496	putative sialic acid transporter; Provisional	97.04
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.01
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.85
PRK15075	434	citrate-proton symporter; Provisional	96.83
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.83
PRK09952	438	shikimate transporter; Provisional	96.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.79
PRK03545	390	putative arabinose transporter; Provisional	96.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.75
PRK09874	408	drug efflux system protein MdtG; Provisional	96.62
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.61
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.58
PRK15011	393	sugar efflux transporter B; Provisional	96.53
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.52
KOG2533	495	consensus Permease of the major facilitator superf	96.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.49
PRK12382	392	putative transporter; Provisional	96.47
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.44
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.41
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.41
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.36
KOG2615	451	consensus Permease of the major facilitator superf	96.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.3
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.29
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.23
PF13347	428	MFS_2: MFS/sugar transport protein	96.21
PRK09705	393	cynX putative cyanate transporter; Provisional	96.18
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.12
KOG0254	513	consensus Predicted transporter (major facilitator	95.99
PRK05122	399	major facilitator superfamily transporter; Provisi	95.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.87
TIGR00891	405	2A0112 putative sialic acid transporter.	95.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.84
PRK03633	381	putative MFS family transporter protein; Provision	95.72
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.71
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.67
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.61
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.59
PRK11462	460	putative transporter; Provisional	95.51
KOG3764	464	consensus Vesicular amine transporter [Intracellul	95.46
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	95.37
PRK11010	491	ampG muropeptide transporter; Validated	95.35
PRK09528	420	lacY galactoside permease; Reviewed	95.23
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.21
PRK10504	471	putative transporter; Provisional	95.2
PRK10054	395	putative transporter; Provisional	95.1
PRK03633	381	putative MFS family transporter protein; Provision	94.91
PRK09669	444	putative symporter YagG; Provisional	94.76
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	94.72
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.7
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.58
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	94.43
TIGR00895	398	2A0115 benzoate transport.	94.03
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	93.91
PLN00028	476	nitrate transmembrane transporter; Provisional	93.9
TIGR00900	365	2A0121 H+ Antiporter protein.	93.79
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.77
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.71
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.68
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	93.3
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.29
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	93.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	92.92
COG2211	467	MelB Na+/melibiose symporter and related transport	92.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	92.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	92.52
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	91.56
PRK15403	413	multidrug efflux system protein MdtM; Provisional	91.32
KOG2563	480	consensus Permease of the major facilitator superf	91.31
PRK03699	394	putative transporter; Provisional	91.18
PRK09584	500	tppB putative tripeptide transporter permease; Rev	90.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	90.68
TIGR00788	468	fbt folate/biopterin transporter. The only functio	90.26
PRK09848	448	glucuronide transporter; Provisional	89.55
PF04281	137	Tom22: Mitochondrial import receptor subunit Tom22	89.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	89.18
PRK10091	382	MFS transport protein AraJ; Provisional	88.55
PRK11462	460	putative transporter; Provisional	88.25
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	87.99
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.95
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	87.77
PRK11043	401	putative transporter; Provisional	87.75
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	87.41
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	87.3
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	87.19
PRK10429	473	melibiose:sodium symporter; Provisional	86.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	86.64
KOG2325	488	consensus Predicted transporter/transmembrane prot	86.38
PRK10133	438	L-fucose transporter; Provisional	86.06
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	86.0
KOG3762	618	consensus Predicted transporter [General function	85.59
TIGR00986	145	3a0801s05tom22 mitochondrial import receptor subun	85.27
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	84.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	84.18
PRK11902	402	ampG muropeptide transporter; Reviewed	83.12
PRK10207	489	dipeptide/tripeptide permease B; Provisional	82.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	81.55
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	81.48
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	80.04

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.67  E-value=5.5e-16  Score=100.04  Aligned_cols=80  Identities=28%  Similarity=0.345  Sum_probs=74.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHhhc
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKL   80 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~   80 (83)
                      .+|+||++.|+++++++..++|+.++++.+.+|++.+.-+...|++|.+.+++..++.++++|||||++..|+.++++++
T Consensus       393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            37999999999999999999999999999999999995445899999999999999999999999999999998887765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.48  E-value=1.4e-15  Score=96.52  Aligned_cols=77  Identities=35%  Similarity=0.609  Sum_probs=70.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI   77 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~   77 (83)
                      .+|+||++.|+++.+++..++|+++++.+.++|.+.+ .+....+.++++++.+..++.++++||||+++++|+++++
T Consensus       374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            4799999999999999999999999999999999888 4447889999999999999999999999999999999864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=3.7e-12  Score=81.44  Aligned_cols=82  Identities=28%  Similarity=0.466  Sum_probs=70.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-------EWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEI   73 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~   73 (83)
                      ++|++|++.|++++|+....+++++++.+.++|.+.       ..++...|.++++.+++..++.+++.||||+++++|.
T Consensus       389 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  468 (479)
T PRK10077        389 LSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM  468 (479)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence            379999999999999999999999999999998776       2455677888888888888888888999999999999


Q ss_pred             HHHHhhccC
Q 034783           74 QASITKLSR   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      ++.++++.+
T Consensus       469 ~~~~~~~~~  477 (479)
T PRK10077        469 EALWEPETK  477 (479)
T ss_pred             HHHHhhccc
Confidence            888877654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.39  E-value=3.3e-12  Score=83.04  Aligned_cols=80  Identities=40%  Similarity=0.637  Sum_probs=71.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHHHHh
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSK-TGTFSIFWVICAAGVA-FVTFLVPETKGRTLEEIQASIT   78 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~~~~~~~~   78 (83)
                      .+|+||.+.|+++.+++..++|+.++++...++.+..... ...|++|+.++.+..+ +.++++||||+++++|+++.+.
T Consensus       420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            3799999999999999999999999999999999988553 7788888888888888 7889999999999999998775


Q ss_pred             hc
Q 034783           79 KL   80 (83)
Q Consensus        79 ~~   80 (83)
                      +.
T Consensus       500 ~~  501 (513)
T KOG0254|consen  500 EG  501 (513)
T ss_pred             cC
Confidence            43

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.39  E-value=1.3e-12  Score=84.52  Aligned_cols=73  Identities=27%  Similarity=0.469  Sum_probs=61.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWS-----------KTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      +|++|++.|+++.|+++.++++++++.+.+++.+.+..           ....++++++++++..++ ++++|||+++++
T Consensus       418 ~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~l  496 (502)
T TIGR00887       418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSL  496 (502)
T ss_pred             hccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCH
Confidence            79999999999999999999999999999999988721           245678888887776664 467899999999


Q ss_pred             HHHHH
Q 034783           71 EEIQA   75 (83)
Q Consensus        71 ~~~~~   75 (83)
                      +|+++
T Consensus       497 eei~~  501 (502)
T TIGR00887       497 EELSG  501 (502)
T ss_pred             HhhhC
Confidence            88764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.02  E-value=3.5e-10  Score=71.89  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      .+|+||+.+|++|.|.++.++++++++.|++. ...+.+...+.++|+..+++..+...++--||||+++
T Consensus       459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             cCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            37999999999999999999999999999998 4555666778999999999999998888889999864

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.98  E-value=2.7e-09  Score=72.51  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      ++|++|++.|++++|+.+..+++++++.|.+.+.+.......++.+++++.+++.++. .++|||+++.+
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l  741 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA-LKLPDTRGQVL  741 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence            3799999999999999999999999999999988877555667777777777765554 46799998753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.90  E-value=2.1e-09  Score=69.59  Aligned_cols=76  Identities=29%  Similarity=0.423  Sum_probs=63.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ   74 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~   74 (83)
                      .+|+||+++|+++.+++.+++.+++++..+.+.++.+      .+....+++++.+++++.+. ..++||||+++++|++
T Consensus       431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~leei~  509 (538)
T KOG0252|consen  431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLEEIS  509 (538)
T ss_pred             ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHHHhc
Confidence            3799999999999999999999999999999998887      23466788888887776555 4568899999999986


Q ss_pred             HHH
Q 034783           75 ASI   77 (83)
Q Consensus        75 ~~~   77 (83)
                      ++.
T Consensus       510 ~e~  512 (538)
T KOG0252|consen  510 NEE  512 (538)
T ss_pred             Chh
Confidence            543

>TIGR00898 2A0119 cation transport protein

Probab=98.87  E-value=9.5e-09  Score=66.45  Aligned_cols=70  Identities=20%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   72 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~   72 (83)
                      .+|++|++.|++++|+.+..+++++++.|.+.. +...+...+++++++..++..+.. +++|||++++++|
T Consensus       435 ~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~  504 (505)
T TIGR00898       435 TAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE  504 (505)
T ss_pred             hcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence            379999999999999999999999999999988 555556677888887777776654 5789999987653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.81  E-value=1.8e-08  Score=63.70  Aligned_cols=71  Identities=38%  Similarity=0.629  Sum_probs=62.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   72 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~   72 (83)
                      +|.+|++.|+++.++...+..+++++.+.+.+.+.+ .++...|+++++++++..+..+++.||+++++.++
T Consensus       409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            689999999999999999999999999999998887 56667788888888888888888889999887653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.68  E-value=5e-08  Score=61.85  Aligned_cols=76  Identities=8%  Similarity=-0.149  Sum_probs=65.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI   77 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~   77 (83)
                      .|..|++.|+++.|+.+..+.++..+.+.+.+.+.+ .+....+.+++++..+..++.+...+++|+.+.+|++++.
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            477899999999999999999999999999999998 5666777788888777777878889999999998876653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.57  E-value=1.8e-07  Score=60.80  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=48.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      +|++|++.|++++++.+.++++++.+.+.+.+.+.+ .+ +..++++..+..++. ++..+++||+++...
T Consensus       368 ~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~-~~~~~~~pes~~~~~  437 (490)
T PRK10642        368 PAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG-LITGVTMKETANRPL  437 (490)
T ss_pred             HHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHhccccCCCC
Confidence            589999999999999888888889999999888877 33 333444444444443 344556799866543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.50  E-value=1.2e-06  Score=57.20  Aligned_cols=75  Identities=16%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQAS   76 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~   76 (83)
                      +|++|+.+|..+.+.....+.+++++++++............+.+++....+..+.+..++|||+++++.+..++
T Consensus       432 ~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  432 AELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence            699999999999999999999999999998655544333333333677777777777789999999998664433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.42  E-value=1.5e-06  Score=46.61  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|.+|++.|+++.++....+.++..+.+.+.+.+.+ .++.+.+.+.+...++..+..++..||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            578999999999999999999999999999988887 4555677777777777777766666664

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.31  E-value=6.3e-06  Score=52.16  Aligned_cols=65  Identities=15%  Similarity=-0.039  Sum_probs=56.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|++++++....+.++..+.+.+.+.+.+ .+|+..|.+.+++.++..++.++++||..
T Consensus       104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            577899999999999999999999999999888887 67888888888888888888888888854

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.28  E-value=3.5e-06  Score=52.04  Aligned_cols=66  Identities=15%  Similarity=0.020  Sum_probs=53.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|++.|+++.++......++..+.+.+...+.+ .++.+.|.+.++..++..+..++..||++.
T Consensus       108 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            588999999999999999999999999998887777 667777877777777766666666666543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.20  E-value=1.3e-05  Score=49.87  Aligned_cols=67  Identities=15%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+.+ .++...+++.++..++..+..++..||++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            578999999999999999999999999999888877 5667778877777777777766777876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.17  E-value=5.2e-06  Score=53.23  Aligned_cols=67  Identities=16%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      +|.+|++.|+++.|+.+..+.+++++.|.+.+.+.+ .++...|...+++.++..+..+...++.+++
T Consensus       363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            588999999999999999999999999999999988 6666777777777777766665555554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.14  E-value=1.6e-05  Score=49.60  Aligned_cols=65  Identities=18%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++.+....++..+.+.+.+.+.+ .++.+.|.+.+.+.++..+...+++||++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            578899999999999999999999999998888877 56677888888877777777767777753

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.13  E-value=2.6e-05  Score=49.83  Aligned_cols=66  Identities=9%  Similarity=-0.013  Sum_probs=54.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|.+.|++++++......++..+.+.+...+..       .++++.|.+.++..++..++.++++||+.+
T Consensus       122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            588999999999999999888999999888777763       367788888888877777777777888754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.13  E-value=3e-05  Score=48.94  Aligned_cols=65  Identities=14%  Similarity=-0.100  Sum_probs=53.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|++++|+......++..+.+.+...+.+ .++++.|++.+++.++..+..+..+||.+
T Consensus       123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        123 IRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            578899999999999999999999999998887777 67788888888888777766666677643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.10  E-value=2.9e-05  Score=49.33  Aligned_cols=65  Identities=12%  Similarity=-0.011  Sum_probs=52.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+.+.++..++.....||++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            578999999999999999999999999999998887 67777888877766665555555677754

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.10  E-value=5.2e-05  Score=49.55  Aligned_cols=64  Identities=13%  Similarity=0.054  Sum_probs=44.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhhHHHHHHHHHHHHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME------------------------WSKTGTFSIFWVICAAGVA   56 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~------------------------~~~~~~~~~~~~~~~~~~~   56 (83)
                      ++|.+|++.|++++++......++..+.+.+...+..                        .+|+..+ ..+++..+...
T Consensus       140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~-~~~~ip~~i~~  218 (502)
T TIGR00887       140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI-GFGAVPALLAL  218 (502)
T ss_pred             HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH-HHHHHHHHHHH
Confidence            3699999999999999998888888877776554432                        1344455 44444444445


Q ss_pred             HHHHhcccC
Q 034783           57 FVTFLVPET   65 (83)
Q Consensus        57 ~~~~~~~et   65 (83)
                      +..+++||+
T Consensus       219 ~~~~~lpES  227 (502)
T TIGR00887       219 YFRLTIPET  227 (502)
T ss_pred             HHHHhCCCC
Confidence            555778996

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.09  E-value=1.9e-05  Score=49.79  Aligned_cols=66  Identities=15%  Similarity=0.082  Sum_probs=53.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|.+.|+++.++.+....++..+.+.+...+.+ .++.+.+.+.+++.++..++..+.+||++.
T Consensus       117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            578899999999999998888888888888776665 566677888888877777777777887654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.09  E-value=3.5e-05  Score=49.31  Aligned_cols=66  Identities=15%  Similarity=0.006  Sum_probs=54.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|.+.|.+++++......++..+.+.+...+.+ .++.+.|++.++..++..+..++.+||++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            578999999999999999999999999988877777 577788888888877776666667888753

>PRK09952 shikimate transporter; Provisional

Probab=98.08  E-value=2.4e-05  Score=50.31  Aligned_cols=64  Identities=8%  Similarity=0.026  Sum_probs=44.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-h-h-hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHH-CINWTITFTFHFMME-W-S-KTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~-~~~~~~~~~~~~l~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|++|++.|+++.++.+..+. +++.+.|.+...+.+ . + +...+.+.++. .+...+..+.++|++
T Consensus       369 ~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~-~~i~~v~~~~~~~~~  436 (438)
T PRK09952        369 TEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAG-CLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH-HHHHHHHHHHccccc
Confidence            689999999999999887765 788999999999887 3 2 23334433334 343444445566644

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.00  E-value=6.9e-05  Score=48.21  Aligned_cols=62  Identities=19%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   63 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (83)
                      +++.|++.|++++++.....-+...+..-+-.++-+ .+|+..|+..+.++++..+..+..+|
T Consensus       127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            478899999999999999999999988888888888 89999999999999999999999999

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.98  E-value=2.1e-05  Score=50.67  Aligned_cols=64  Identities=9%  Similarity=0.063  Sum_probs=52.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      ++|.+|.+.|+++.++......++.++.+.+...+.+ . ++...|.+.++..++..+..+...+|
T Consensus       156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            3688999999999999999999999999999888877 3 67778888888777766665555554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.98  E-value=6.2e-05  Score=49.05  Aligned_cols=63  Identities=10%  Similarity=-0.026  Sum_probs=46.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME----------WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +|.+|.+.|+++.++....+.+++.+.+.+.|.+..          .++++.|.+.+++.++..+..+++.++
T Consensus       149 ~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        149 STMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            578999999999999988777787777776665532          256778888888877776666554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.98  E-value=2.7e-05  Score=49.89  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   69 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~   69 (83)
                      +|+||++.|++++|+.+..+++ .+...+.+...+...+.+...+++.+...+.......+ .++++++
T Consensus       362 ~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~  429 (432)
T PRK10406        362 AEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKG  429 (432)
T ss_pred             HHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-hhhcccc
Confidence            6999999999999999987765 35556666664433443333344444444443443333 3444544

>TIGR00889 2A0110 nucleoside transporter

Probab=97.97  E-value=6.5e-05  Score=48.20  Aligned_cols=67  Identities=10%  Similarity=0.012  Sum_probs=53.9

Q ss_pred             CCCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-h------hHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVI-FIHHCINWTITFTFHFMMEW-S------KTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~-~~~~~~~~~~~~~~~~l~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      +|.+|++.|+++.|+.+ ..+.++.++.|.+.+.+.+. +      +...|.+.+++.++..++.+++++|+++.
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            57899999999999997 56678999999999988872 2      34567777778788888888888887554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.96  E-value=7.8e-05  Score=48.12  Aligned_cols=59  Identities=12%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWT-ITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      .|.+|++.|+++.|+.+....+++.+ .+.+.+.+.+ .+....|.+.++.++++.+....
T Consensus       373 ~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        373 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999988888765 6888888888 56667777777777776665543

>TIGR00895 2A0115 benzoate transport

Probab=97.95  E-value=1.6e-05  Score=49.48  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=52.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++......++..+.+.+.+.+.+ .++...+.+.+++..+..++.+.++||+.
T Consensus       131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            578999999999999999999999999999888877 56666677776666666666667778763

>TIGR00901 2A0125 AmpG-related permease

Probab=97.94  E-value=7.6e-05  Score=46.42  Aligned_cols=65  Identities=14%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+.+.++......++..+.+.+...+.. .+        +...|++.++..++..+..++..||.+
T Consensus       109 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       109 LEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            688999999999999998889999988888877766 44        667777777766665555444567753

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.94  E-value=7.4e-06  Score=52.65  Aligned_cols=66  Identities=18%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|++.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+...++..+...+..||++.
T Consensus       116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            588999999999999999999999999999888877 677777887777777766666667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.94  E-value=6.8e-05  Score=47.29  Aligned_cols=66  Identities=18%  Similarity=0.081  Sum_probs=51.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|.+.|++++++......++..+.+.+...+.+ .++.+.|.+.+++..+..+..++++||.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            467888899999999888888888888887777666 577788888888777776666677888543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.93  E-value=2.5e-05  Score=49.51  Aligned_cols=57  Identities=12%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      +|++|++.|+++.++.+..++++++..+.+.+.+.. +....|.++++..++..+...
T Consensus       306 ~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       306 GKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999998887774 555677778777777666653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.93  E-value=7.5e-05  Score=47.96  Aligned_cols=64  Identities=9%  Similarity=-0.003  Sum_probs=51.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|++++++......++..+.+.+...+.+ .++++.|.+.+++.++..++..++++|+
T Consensus       137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            578899999999999999999999999998888877 6777788877777666655555566654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.91  E-value=7.6e-05  Score=47.93  Aligned_cols=64  Identities=9%  Similarity=-0.029  Sum_probs=49.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|+++.|+.+....+++.+.+.+......  .++...|++.++++++..+..++++||+
T Consensus       144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       144 VHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            578999999999999988888888888777665444  4667778888888777777766777764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10054 putative transporter; Provisional

Probab=97.90  E-value=9.1e-05  Score=47.12  Aligned_cols=65  Identities=14%  Similarity=-0.054  Sum_probs=51.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|++.|+++.|+.+....++.++.+.+...+...++...|.+.++...+..+...+++||++
T Consensus       122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47789999999999999999999999999988877666677777777666666555555566553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.86  E-value=4.1e-05  Score=48.33  Aligned_cols=65  Identities=15%  Similarity=-0.040  Sum_probs=49.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|++++++.+....++..+.+.+...+.+ .++...|++.++..++..+....++||+.
T Consensus       129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            588999999999999998888888888887666655 55666777777666666666666677753

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.86  E-value=0.00015  Score=46.16  Aligned_cols=64  Identities=13%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|.+|.+.|+++.|+.+....++..+.+.+.+.+...++.+.|++.+...++..+...+..||.
T Consensus       125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            4778999999999999999999999999998888876667778777777666666555666764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.85  E-value=0.0002  Score=45.14  Aligned_cols=64  Identities=14%  Similarity=0.005  Sum_probs=51.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|.+|.+.|+++.++......++.++.+.+...+.+ .++...+++.++..++..+..++..+|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            467899999999999988888888999998888877 5667778888877777666666667764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.83  E-value=0.0001  Score=46.69  Aligned_cols=66  Identities=17%  Similarity=0.070  Sum_probs=52.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      .|.+|.+.|.++.++......++..+.+.+...+.+ .++.+.+++.++..++..+..++..||++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            477899999999998888878888888888777777 567778888888877776666667788753

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.79  E-value=4.1e-05  Score=49.18  Aligned_cols=66  Identities=12%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCIN-WTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      .|.+|++.|+++.|+.+..+++++ ++.|.+.+.+.+ .+....+.+..+..+++.++..+.+||.|+
T Consensus       371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            478999999999999998888774 678899999888 566677777888788888888888888663

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.78  E-value=3.4e-05  Score=47.34  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|++.++..++..++...++++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  111 ADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred             cccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence            578999999999999999999999999999888875 5667788888888888777555555543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00057  Score=44.94  Aligned_cols=74  Identities=9%  Similarity=0.010  Sum_probs=58.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccc----CCCCCHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPE----TKGRTLEEIQA   75 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e----t~~~~~~~~~~   75 (83)
                      +...|++.|++..++.+....++.++.-.+.+.+.+  .+|...|.++++++++..++.+.+..|    ++..+.+|.+.
T Consensus       154 ~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~  233 (466)
T KOG2532|consen  154 AKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKY  233 (466)
T ss_pred             eeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH
Confidence            345799999999999999999999999989898988  588899999999999988876555443    34445555544

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.74  E-value=0.00012  Score=46.53  Aligned_cols=36  Identities=14%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .|.+|++.|++++|+....+++++.+.|.+...+.+
T Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999998887

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.73  E-value=0.00015  Score=47.44  Aligned_cols=61  Identities=11%  Similarity=-0.008  Sum_probs=52.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      |.+.|+++.++......++..+.|.+...+.+ .++++.|++...+.++..++..+++|+..
T Consensus       125 ~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        125 EEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            67999999999999999999999999998888 67888888888777777777777777753

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.73  E-value=0.00032  Score=43.16  Aligned_cols=56  Identities=13%  Similarity=-0.076  Sum_probs=44.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      +|++|.+.|+++.++......++..+.+.+...+.+ .++.+.+++.++..++..+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL  174 (365)
T ss_pred             HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999888877 56666676665555544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.70  E-value=0.00029  Score=44.04  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      .|.+|.+.|+++.++......++..+.+.+...+.+ .+  +.+.+.+. ++..+..++.....||++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~-~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFIS-ILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             HHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH-HHHHHHHHHHHHhCCCCh
Confidence            578999999999999999999999999988887776 33  45555543 333333444455677754

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.68  E-value=0.00077  Score=44.34  Aligned_cols=64  Identities=11%  Similarity=-0.052  Sum_probs=46.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------------------WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      ++.||.+.|+++.|+....+.++..+.+++.|.+..                   .+....++++..+.++..++.++.+
T Consensus       153 s~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~  232 (462)
T PRK15034        153 SFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGM  232 (462)
T ss_pred             HHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            567999999999999987788888888877776552                   1133445677777777777777766


Q ss_pred             ccC
Q 034783           63 PET   65 (83)
Q Consensus        63 ~et   65 (83)
                      ++.
T Consensus       233 ~~~  235 (462)
T PRK15034        233 NDI  235 (462)
T ss_pred             CCc
Confidence            654

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.66  E-value=0.00019  Score=44.34  Aligned_cols=57  Identities=14%  Similarity=0.136  Sum_probs=45.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~   58 (83)
                      +|.+|++.|+++.|+...+..+++.+.+.+.+.+.+ .+ ....+.+.++..++..+..
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999988 44 4556666666655555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.65  E-value=0.00034  Score=44.36  Aligned_cols=63  Identities=16%  Similarity=0.043  Sum_probs=44.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTF---HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|++++++......++.++.+.+.   ..... .++.+.|++.+.. .+..++..+++||+
T Consensus       153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~-~~~~~~~~~~l~~~  219 (481)
T TIGR00879       153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP-AGLLFLGLFFLPES  219 (481)
T ss_pred             HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHHHHHHhcCCCC
Confidence            6899999999999999988889988888876   33223 4556666664443 34444455667775

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.65  E-value=0.0002  Score=45.20  Aligned_cols=37  Identities=5%  Similarity=0.091  Sum_probs=34.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW   38 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~   38 (83)
                      +|.+|++.|+++.|+.+..+.++.++.+.+.+.+.+.
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        334 PLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            5789999999999999999999999999999998873

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.61  E-value=0.001  Score=42.89  Aligned_cols=65  Identities=22%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      ++|.+|.+.|++++++......++..+.+.+...+.        . .++++.|++.++..++.. +..+++||+.
T Consensus       145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~  218 (479)
T PRK10077        145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETP  218 (479)
T ss_pred             HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence            369999999999999988777777777665543332        1 356667777666665554 3456688864

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.59  E-value=0.0011  Score=45.98  Aligned_cols=65  Identities=12%  Similarity=0.049  Sum_probs=43.9

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh------------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS------------KTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++|++|.+.|++.+++......++.++.+.+...+.. .+            .|..++.+.++..+..++..+++||+
T Consensus       280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES  357 (742)
T TIGR01299       280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES  357 (742)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999888888888777766544443 11            13333444444555556667788997

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.58  E-value=0.00048  Score=44.52  Aligned_cols=65  Identities=11%  Similarity=-0.068  Sum_probs=44.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTF-HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|++.|++++|+.+....+++.+.+.+. ..+.. .++.+.|++.++..++..++..+++||+.
T Consensus       146 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        146 VHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            4678999999999998777777764433332 22222 46667787777777777677777777753

>PRK12382 putative transporter; Provisional

Probab=97.54  E-value=0.0007  Score=42.71  Aligned_cols=61  Identities=8%  Similarity=-0.004  Sum_probs=49.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      .|.+|++.|+++.|+.+....+++.+.+.+...+.+ .++...+.+.+...++..+..++..
T Consensus       328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            467899999999999999999999999999999888 5666777777776666665554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.53  E-value=0.00096  Score=42.15  Aligned_cols=67  Identities=12%  Similarity=0.006  Sum_probs=49.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   69 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~   69 (83)
                      .|.+|.+.|+++.++.+....++..+.+.+...+.+ .+....+.+.++..+++.+..+ .+++.++++
T Consensus       328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  395 (399)
T PRK05122        328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRA  395 (399)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhccccccc
Confidence            367899999999999999999998888888888877 5556667776666666555544 455544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.52  E-value=0.00052  Score=42.63  Aligned_cols=63  Identities=14%  Similarity=0.053  Sum_probs=42.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHH-HHHHHHHHHHHHHHHHhccc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-----------SKTGTF-SIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +|.+|.+.|+++.++......++..+.+.+.+.+...           ++.+.+ ...+.+..+..++.+...+|
T Consensus       116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence            5788999999999999888888888887777766641           345555 33344444444444444554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.51  E-value=0.0013  Score=41.77  Aligned_cols=65  Identities=6%  Similarity=-0.075  Sum_probs=50.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      |++.|++..++.+..+.++..+.|.+...+.+ .+ ....+.+..+.+++..+..+...|||+++..
T Consensus       323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            56789999999999999999999999999998 33 3455555566666666666777899887754

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.50  E-value=0.00059  Score=44.26  Aligned_cols=58  Identities=10%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-------------WSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      .|.+|.+.|+++.|+.+..+++ +.++.+.+...+.+             .++...|.++.+..+++.+...
T Consensus       375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999887 66899999888887             2345566666555555544433

>TIGR00898 2A0119 cation transport protein

Probab=97.48  E-value=0.003  Score=41.19  Aligned_cols=62  Identities=13%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++|.+|.+.|+.+.++......++.++.+.+...+.  ++.+.+++.++..++..+.. +++||+
T Consensus       205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            469999999999999987766777666666543333  36667777776666555544 678885

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.48  E-value=0.00041  Score=45.92  Aligned_cols=52  Identities=15%  Similarity=0.051  Sum_probs=42.3

Q ss_pred             CCCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783            2 AEIFPIN--MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA   53 (83)
Q Consensus         2 ~Elfp~~--~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   53 (83)
                      +|+||++  .|+++.++.+...++++++.|.+.+.+.+ .++.+.|.+.++..++
T Consensus       126 ~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             HHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            6899986  79999999999999999999999999987 6666677665543333

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.47  E-value=0.0004  Score=44.13  Aligned_cols=46  Identities=15%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIF   47 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~   47 (83)
                      +|.+|.+.|+++.++......++.++.+.+.+.+.+ .++.+.|++.
T Consensus       132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~  178 (426)
T PRK12307        132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG  178 (426)
T ss_pred             HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence            588999999999999988888899988888777776 5566666553

>PRK10504 putative transporter; Provisional

Probab=97.46  E-value=0.00097  Score=43.08  Aligned_cols=64  Identities=17%  Similarity=0.020  Sum_probs=51.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|.+......+..+......|+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            477899999999999998889999999999888887 6667778777776666666666666654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.0011  Score=43.92  Aligned_cols=65  Identities=18%  Similarity=0.077  Sum_probs=44.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +.|+-|.+.||....+......++..+... ..|.+.. ...|.....+..+..+.......++||+
T Consensus       141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PES  207 (485)
T KOG0569|consen  141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPES  207 (485)
T ss_pred             HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999888888888777744 4666665 3333344444444445555566778885

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.45  E-value=0.001  Score=43.66  Aligned_cols=64  Identities=9%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+.+  .++...|++.++...+..+.. ++.||+.
T Consensus       133 ~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~  198 (491)
T PRK11010        133 TDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPT  198 (491)
T ss_pred             HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            588999999999999999999999999988888877  367778888777766654443 4477763

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.44  E-value=0.0015  Score=41.28  Aligned_cols=66  Identities=11%  Similarity=0.060  Sum_probs=49.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      .|.++.+.|+.+.++......++..+.+.+...+.+ .++...|++.++..++..+...++.||++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        122 RDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            356777888888888888888888888888777776 566777877777666666666667788643

>PRK15075 citrate-proton symporter; Provisional

Probab=97.43  E-value=0.0005  Score=44.18  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~   37 (83)
                      +|.+|++.|+++.++.+.++.. ++.+.|.+.+.+.+
T Consensus       357 ~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        357 TEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5899999999999998776665 58888888888887

>PRK11043 putative transporter; Provisional

Probab=97.40  E-value=0.0028  Score=40.15  Aligned_cols=62  Identities=5%  Similarity=0.027  Sum_probs=45.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +|.+|.+.|....+.......++..+.+.+...+.+ .++...+.+.+...++..+..++ ++|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  182 (401)
T PRK11043        120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKP  182 (401)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCC
Confidence            577888888888888877778888888888888877 56667777777776666555443 444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.40  E-value=5.5e-05  Score=46.71  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|+++.++......++..+.+. +...+.. .++.+.|.+.+++..+..++.++..+|+
T Consensus       109 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             HHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            57899999999999999988899888884 4444444 5566677777777776666666666654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.39  E-value=0.0015  Score=41.56  Aligned_cols=64  Identities=11%  Similarity=-0.006  Sum_probs=45.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|++|.+.|+++.|+......++..+.|.+...+.+..++..+.+.+... +...+..+.+||.+
T Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~~  177 (393)
T PRK11195        114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY-LLAALFNLFIPRLG  177 (393)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCc
Confidence            68899999999999999999999999999988888754444444333332 22234456677653

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.0011  Score=43.06  Aligned_cols=63  Identities=13%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---hHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS---KTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +++.||++.++.++++.- .++++..+..++.|.+.. .+   +.....++....++.++..++.+.|
T Consensus       129 ~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         129 ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            467899999999999999 999999999999999988 45   5667788888888878877776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.32  E-value=0.00089  Score=40.83  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      .|..|++.|++..|+......++..+.+.+.+.+.+ .+....+.+.++..++..++.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            578899999999999999999999999999999987 566667777777776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.30  E-value=0.0045  Score=40.75  Aligned_cols=62  Identities=21%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++|+++++.|+.+.++ ....|.++.+.+....++.. +|++.+++..+...+..++ ++..||.
T Consensus       196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            3699999999999999 88899998888888777776 6667777766666665555 5556675

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.30  E-value=0.0013  Score=42.63  Aligned_cols=63  Identities=14%  Similarity=0.205  Sum_probs=45.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|.+|.+.|+++.++......++..+.+.+...+.+ .++.+.|++ +.+.++..++.....||+
T Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence            578999999999999999999999999999888877 555555554 333333333334456664

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.30  E-value=0.00081  Score=42.92  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=48.5

Q ss_pred             CCCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSL-VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|++.|+++.+. .+....++.++.+.+...+.+ .++...|...+++.++..++.++.+++.+
T Consensus       341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            467899999888766 355677888899999998888 56677788778777777766666665533

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.29  E-value=0.00053  Score=42.31  Aligned_cols=52  Identities=8%  Similarity=-0.054  Sum_probs=42.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA   53 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   53 (83)
                      +|.+|++.|+++.|+.+....+++.+.+.+.+.+.+ .++...+.+.+++.++
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            578999999999999999999999999999998887 5555566655554444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.26  E-value=0.0047  Score=39.38  Aligned_cols=64  Identities=5%  Similarity=-0.084  Sum_probs=47.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|..|.+.|+++.++......++..+.+.+...+.+ .++.+.+.+.+...++. .+..+.+|+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~  200 (417)
T PRK10489        136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALP  200 (417)
T ss_pred             hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCC
Confidence            578899999999999988889999999999888877 45566666555444443 33445666653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.24  E-value=0.0023  Score=39.03  Aligned_cols=56  Identities=18%  Similarity=0.000  Sum_probs=44.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+.+ .++...+.+.+...++..+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999888887 44556666655555554433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.22  E-value=0.0023  Score=41.88  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM---------EWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++|.+|.+.|++..++......++..+.+.+.+.+.         ..+|++.|++.+...++ .++....+||+
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es  215 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET  215 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence            368999999999999887666666666655443332         14667777765443333 34444567875

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.20  E-value=0.003  Score=40.18  Aligned_cols=64  Identities=11%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+.+ . ++...|++.++..++..+ ..+..||++
T Consensus       120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~  185 (402)
T PRK11902        120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPE  185 (402)
T ss_pred             HHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence            578999999999999998888888888888777777 3 677778777776655444 345667653

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.20  E-value=0.0033  Score=39.91  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .|++|.+ |+++.++......++..+.+.+.+.+.+ .++...+.+.++..++ ..+..++.||+
T Consensus       331 ~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  393 (393)
T PRK15011        331 QDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV  393 (393)
T ss_pred             HHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence            4778865 9999999888889999999999998888 4554555544444444 44445556654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.19  E-value=0.0025  Score=45.48  Aligned_cols=65  Identities=11%  Similarity=-0.136  Sum_probs=48.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +++++|.+.|++++|+......++..+++.+...+.. .++...| +..++..+..++.++++|+++
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            3678999999999999999999999999999999888 4444444 444444444455556666653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.18  E-value=0.0038  Score=42.51  Aligned_cols=64  Identities=11%  Similarity=-0.060  Sum_probs=46.9

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hhHHHHHHHHHHHHHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W----------------------SKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~----------------------~~~~~~~~~~~~~~~~~~~   57 (83)
                      +.|.+|.+.|+...++......++..+++.+...+.+ .                      .||..|.+.+++.++..+.
T Consensus       197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999998888777765 1                      1344566666666665544


Q ss_pred             HHHhcccC
Q 034783           58 VTFLVPET   65 (83)
Q Consensus        58 ~~~~~~et   65 (83)
                       ++.+|++
T Consensus       277 -l~~~p~~  283 (633)
T TIGR00805       277 -FFFFPKA  283 (633)
T ss_pred             -HHhCccc
Confidence             3455554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03699 putative transporter; Provisional

Probab=97.17  E-value=0.0057  Score=38.83  Aligned_cols=57  Identities=4%  Similarity=0.009  Sum_probs=43.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      +|.+|.+.|+++.++......+++.+.+.+...+..  .++++.|.+.++..++..++.
T Consensus       121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            578999999999998887777888888888777665  467777777776666554443

>PTZ00207 hypothetical protein; Provisional

Probab=97.16  E-value=0.005  Score=41.77  Aligned_cols=62  Identities=6%  Similarity=0.020  Sum_probs=47.3

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +.|| +.|+++.|+......+++++.+.+...+...++...+++.+++.++..++.+.++++.
T Consensus       147 ~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        147 SVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            4576 7899999999999999998777766666555566778888888888777777666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.13  E-value=0.0028  Score=39.44  Aligned_cols=64  Identities=9%  Similarity=-0.115  Sum_probs=45.1

Q ss_pred             CCCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            3 EIFPINMKGLA--GSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         3 Elfp~~~R~~~--~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      |..|.+.|..+  .+.....+.++..+.+.+...+.+ .+++..|++.+...++..+..++++||.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       114 EHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            45566666644  466666667788888888777776 56777888888877777676666677743

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.11  E-value=0.0027  Score=40.85  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM---------EWSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      ++|.+|.+.|++..++.......+.++.+.+.+.+.         ..+|+..|++-++..++. .+....+||+.
T Consensus       149 i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        149 MSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            368899999999988876665555555555443332         246666776655544433 33344567754

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.10  E-value=0.0019  Score=41.96  Aligned_cols=59  Identities=15%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      +.+| +.|+++.++......++..+.+.+.+.+.+ .++.+.|++.+++.++..+..++..
T Consensus       135 ~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~  194 (455)
T TIGR00892       135 KYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR  194 (455)
T ss_pred             HHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            5565 789999999999999999999998888877 6778888888887766555444333

>TIGR00897 2A0118 polyol permease family

Probab=97.06  E-value=0.0049  Score=39.27  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      +|+.| +.|+++.|+.+....+++++.|.+...+.+ .+....+++.++..++..+..++
T Consensus       341 ~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       341 PTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            35545 589999999999999999999999999988 66667777777776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.04  E-value=0.0055  Score=43.61  Aligned_cols=38  Identities=18%  Similarity=0.108  Sum_probs=33.4

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW   38 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~   38 (83)
                      ++|++|.+.|++++|+......++.++++.+...+...
T Consensus       128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        128 IPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999999988877764

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.04  E-value=0.0006  Score=44.22  Aligned_cols=48  Identities=2%  Similarity=-0.092  Sum_probs=38.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWV   49 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~   49 (83)
                      +|.+|.+.|++++|+.+....+++.+.+.+.+.+.+ .+....+...+.
T Consensus       392 ~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        392 GGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF  440 (496)
T ss_pred             HhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            578899999999999999999999999999998888 454445544443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.01  E-value=0.0034  Score=38.75  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      |.+| +.|+++.++......++..+.+.+...+.+ .++++.|.+.++..++..+..+++.++
T Consensus       118 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       118 KWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            4455 569999999888877777766655555555 567778888888877777766666654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.00  E-value=0.0039  Score=41.13  Aligned_cols=58  Identities=9%  Similarity=-0.026  Sum_probs=42.1

Q ss_pred             CCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783            1 MAEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         1 ~~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      ++|.||++.  |+.+.++.+...+++.++.+.+.|.+.+ .++++.|++.++ +.+..+..+
T Consensus       130 i~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~  190 (489)
T PRK10207        130 LSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVY  190 (489)
T ss_pred             HHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHH
Confidence            358898874  4778999999999999999999999988 666666666433 333333333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.00  E-value=0.0083  Score=38.78  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             CCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhhH------HHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKT------GTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~-~~~~~~~~~~~~~l~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      .+..|.+.|++++++..... .++..+..++.+.+.+ .+..      ..+.+.+++.++..++.+++.+|+.
T Consensus       327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            46789999999999987765 6788888889999888 3322      2334445555555555556666643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.88  E-value=0.00045  Score=44.83  Aligned_cols=55  Identities=11%  Similarity=-0.043  Sum_probs=42.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVA   56 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~   56 (83)
                      .|.+|.+.|+++.++.+....+++++.+.+...+.+ . ++...|.+.+++.++..+
T Consensus       359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            467899999999999999999999999999988877 3 344566665555554444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.87  E-value=0.0067  Score=39.54  Aligned_cols=67  Identities=9%  Similarity=0.015  Sum_probs=52.8

Q ss_pred             CCCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVIF-IHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      ++.||+|..++...++.+ ...++.++.+.....+.+ .+...+|++.+.+.+...++..+.+++.+..
T Consensus       338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            456899999999999754 557888889999999999 6667789999999998889988888766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.85  E-value=2.6e-05  Score=51.02  Aligned_cols=70  Identities=13%  Similarity=-0.017  Sum_probs=57.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      ++++||...|+++.++.+.+.-+++.++-..-..+..  ..|++.|..-++++++..++..++.+|+..+..
T Consensus       146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~  217 (493)
T KOG1330|consen  146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGAR  217 (493)
T ss_pred             hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccc
Confidence            4789999999999999999998888877776665555  347788999999999999998888888765433

>PRK15075 citrate-proton symporter; Provisional

Probab=96.83  E-value=0.011  Score=38.12  Aligned_cols=45  Identities=20%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhhHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSI   46 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~   46 (83)
                      +|.+|++.|++++++.....+++..+.+.+...+.        + .++++.|++
T Consensus       143 ~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~  196 (434)
T PRK15075        143 AEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLI  196 (434)
T ss_pred             HhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHH
Confidence            68999999999999988877776666555544432        2 455556654

>TIGR01272 gluP glucose/galactose transporter

Probab=96.83  E-value=0.0069  Score=37.66  Aligned_cols=66  Identities=9%  Similarity=-0.065  Sum_probs=46.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHHHHH-HHHhccc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-----------------WSKTGTFSIFWVICAAGVAF-VTFLVPE   64 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~e   64 (83)
                      ++.|.+.+++.+++....+.++..+.|.+...+..                 ..+..+|++.+.+..+..+. ....+||
T Consensus        37 ~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~  116 (310)
T TIGR01272        37 ILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPE  116 (310)
T ss_pred             HHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            45688889999999999999999999999887773                 13445666565554444443 3344576


Q ss_pred             CCCC
Q 034783           65 TKGR   68 (83)
Q Consensus        65 t~~~   68 (83)
                      .+.+
T Consensus       117 ~~~~  120 (310)
T TIGR01272       117 LQEA  120 (310)
T ss_pred             CCcc
Confidence            5443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09952 shikimate transporter; Provisional

Probab=96.79  E-value=0.0074  Score=39.02  Aligned_cols=64  Identities=19%  Similarity=0.025  Sum_probs=40.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+...+.......++..+...+...+..         .+|+..|.+.++..++ .++.....||++
T Consensus       151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~  223 (438)
T PRK09952        151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA  223 (438)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            589999999999888877766676666555444331         4566677665554333 333334566654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.79  E-value=0.013  Score=36.46  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=42.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      ++|.+|.+.|+...++......++.++.+.+...+..         .++...+.+.+...++. .+.....+|+.
T Consensus       121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~  194 (394)
T TIGR00883       121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETP  194 (394)
T ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCCh
Confidence            3688999999999999988888888888877655532         23444555444433332 33334456543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.0013  Score=42.96  Aligned_cols=62  Identities=15%  Similarity=0.039  Sum_probs=51.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            4 IFPINMKGLAGSLVIFIHHCINWTITFTF--HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .||.+.|++..|+=+..+++++++++.+.  ..+.. .++...|++=++++++..++.++.++|+
T Consensus       145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999988  55555 4677788888888888888888777553

>PRK03545 putative arabinose transporter; Provisional

Probab=96.77  E-value=0.016  Score=36.63  Aligned_cols=59  Identities=8%  Similarity=-0.049  Sum_probs=46.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      |..| +.|++++|+.+....++..+.+.+.+.+.+ .+....+.+.+.+..++.++.+...
T Consensus       321 ~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        321 KLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            4445 688999999999999999999999999998 6667777777777777666665554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.75  E-value=0.0033  Score=42.68  Aligned_cols=64  Identities=16%  Similarity=0.314  Sum_probs=42.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH-Hhccc
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT-FLVPE   64 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~e   64 (83)
                      ++|+.|.|.|..+.++.....-......+.+...+.. .+|+|.|+++.++..+..+..+ ++.|.
T Consensus       155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4799999999988877765444444455555544443 5788888888887777665433 33443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.62  E-value=0.0074  Score=38.07  Aligned_cols=62  Identities=8%  Similarity=-0.142  Sum_probs=49.4

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +..|.+.|++..++......++..+.+.+...+.+ .+....|.+.+++.++..++.++..++
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678889999999999999999999999888887 566778888888877777776655443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.61  E-value=0.021  Score=36.51  Aligned_cols=65  Identities=8%  Similarity=-0.057  Sum_probs=45.3

Q ss_pred             CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME--------WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|+. +++.|++..++......+++.+...+.+.+..        .++...+.+.+++..+..+..++..+|.+
T Consensus       125 ~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       125 PAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            4665 56889999998888888887777776555543        23445667777777777666666777754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.58  E-value=0.02  Score=36.90  Aligned_cols=63  Identities=10%  Similarity=-0.055  Sum_probs=45.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhhHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME---------------------------WSKTGTFSIFWVICAAG   54 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~~~~~   54 (83)
                      .++.|.+.|++..++....+.++..+.+.+.+.+..                           .++..+|.+.+++.++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~  199 (410)
T TIGR00885       120 LVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV  199 (410)
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999988777643                           13556677777766665


Q ss_pred             HHHHH-Hhccc
Q 034783           55 VAFVT-FLVPE   64 (83)
Q Consensus        55 ~~~~~-~~~~e   64 (83)
                      .++.. ...||
T Consensus       200 ~~~~~~~~~p~  210 (410)
T TIGR00885       200 ALLIMLTKMPA  210 (410)
T ss_pred             HHHHHHhcCCC
Confidence            44433 23565

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.53  E-value=0.025  Score=35.95  Aligned_cols=54  Identities=11%  Similarity=-0.116  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783           14 GSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus        14 ~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      .++......++.++.+.+...+.+ .++...|...++..++..++.+++.||.++
T Consensus       145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            356666778889999998888876 677788888888777777777777887643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.52  E-value=0.029  Score=37.16  Aligned_cols=70  Identities=10%  Similarity=-0.024  Sum_probs=59.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLE   71 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~   71 (83)
                      +++-..+.|....++...+-+.+..+.+.+...+.. .+....|.+-.+..++..++...++||+...+.+
T Consensus       138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            566778899999999999999999999999888887 6677788888888888888999999998665544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.52  E-value=0.0023  Score=42.49  Aligned_cols=64  Identities=16%  Similarity=-0.019  Sum_probs=54.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      .|..+.|++.+++-+..+.++++++.++...+..       .+|.+.|.+-++++++..+++++++|+...
T Consensus       162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            4678899999999999999999999999877532       578889999999999999999999987533

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.49  E-value=0.018  Score=35.88  Aligned_cols=55  Identities=15%  Similarity=0.105  Sum_probs=41.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      .|..|.+ |+++.++.+....++..+.+.+.+.+.+ .+....+.+.++..+++.+.
T Consensus       314 ~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  369 (375)
T TIGR00899       314 QDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC  369 (375)
T ss_pred             HHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            4667765 5699999999999999999999998887 55556666666655554444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=96.47  E-value=0.021  Score=36.10  Aligned_cols=44  Identities=5%  Similarity=-0.266  Sum_probs=33.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFS   45 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~   45 (83)
                      .|.+|.+.|++++|+......++..+.+.+.+.+.+ .++...+.
T Consensus       138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  182 (392)
T PRK12382        138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL  182 (392)
T ss_pred             HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence            478899999999999888888888888888777766 44443333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.44  E-value=0.017  Score=38.28  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      +|+.|....+.-.|+....+...+++.|+++..+.+ .+ .+..+....++.+++.++. +.++..|++
T Consensus       406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~  473 (477)
T PF11700_consen  406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR  473 (477)
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence            688999999999999999999999999999999998 33 4555655555555554443 556655554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.41  E-value=0.026  Score=37.36  Aligned_cols=52  Identities=6%  Similarity=-0.034  Sum_probs=38.6

Q ss_pred             CCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783            2 AEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA   53 (83)
Q Consensus         2 ~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   53 (83)
                      +|+||.+.  |..+.++.+...+++.++.+.+.+.+.+ .++++.|.+.++...+
T Consensus       138 ~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        138 STCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            57787543  4557888888999999999999999988 6677777766543333

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.41  E-value=0.028  Score=37.66  Aligned_cols=41  Identities=5%  Similarity=-0.125  Sum_probs=34.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTG   42 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~   42 (83)
                      ...+|.+.|+++.|+......++.++++.+.+.+...++..
T Consensus       140 ~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~  180 (511)
T TIGR00806       140 FSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWIS  180 (511)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            35689999999999999999999999999988855555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.37  E-value=0.0046  Score=39.67  Aligned_cols=46  Identities=4%  Similarity=0.003  Sum_probs=37.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIF   47 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~   47 (83)
                      .|.+|++.|+++.|+.+..+++++++.|.+.+.+.+ .+ +...+++.
T Consensus       359 ~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       359 DQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             ccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            478999999999999999999999999999988888 33 44444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00897 2A0118 polyol permease family

Probab=96.36  E-value=0.021  Score=36.37  Aligned_cols=35  Identities=3%  Similarity=-0.264  Sum_probs=26.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCIN-WTITFTFHFMME   37 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~-~~~~~~~~~l~~   37 (83)
                      +.+|++.|++++|+......++. .+.+.+...+.+
T Consensus       132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~  167 (402)
T TIGR00897       132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP  167 (402)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            56799999999999988887775 456666555554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.34  E-value=0.0036  Score=40.70  Aligned_cols=37  Identities=11%  Similarity=-0.023  Sum_probs=32.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      ++|+++.+.|+.++|.......++-++.|++-.++..
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            4799999999999999988888888888888777665

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.30  E-value=0.045  Score=36.75  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH-HhcccCCC
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT-FLVPETKG   67 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~et~~   67 (83)
                      +..|.+.|++..|+..++...+..++..+.+.+.+ .+....+.+.++..++..++.. ..+++.+.
T Consensus       334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~  400 (524)
T PF05977_consen  334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE  400 (524)
T ss_pred             HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            35699999999999999999999999999999988 5666666655555444444433 33555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.29  E-value=0.0019  Score=41.97  Aligned_cols=63  Identities=10%  Similarity=-0.109  Sum_probs=44.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW----SKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +|.+|.+.|++++|+......++.++.+.+...+...    ++...|.+.+++.++..+..+++.++
T Consensus       148 ~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        148 TRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             HHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999888888888888876655542    24455666666666665555555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.23  E-value=0.026  Score=37.10  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=45.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   63 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (83)
                      +|..|.+.|++.+|+......+++.+.+.+.....+ .+..+.|...++..++..++.++..|
T Consensus       407 ~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       407 TKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999888999998888776655 44556666666666666665554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.21  E-value=0.026  Score=36.31  Aligned_cols=64  Identities=11%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            1 MAEIFP-INMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         1 ~~Elfp-~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      .+|+.+ ++.|.+..+.....+.+++.+...+.+.+.+ .       +......+++++..+..++..+..+|
T Consensus       128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            367776 4689999999999999988888888777775 1       23455666777777777777777788

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.18  E-value=0.052  Score=34.61  Aligned_cols=51  Identities=8%  Similarity=-0.112  Sum_probs=37.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAA   53 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~   53 (83)
                      .+.+| +.|++++++......++..+.+.+.+.+.+.  ++...+.+++...++
T Consensus       123 ~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        123 KRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            35676 7799999999888888888988888888773  455556555554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.12  E-value=0.029  Score=36.88  Aligned_cols=53  Identities=9%  Similarity=0.046  Sum_probs=40.5

Q ss_pred             CCCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 034783            2 AEIFPINM---KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG   54 (83)
Q Consensus         2 ~Elfp~~~---R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~   54 (83)
                      +|.+|.+.   |+++.++.+...+++.++.+.+.+.+.+ .++...|.+.++..++.
T Consensus       128 a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       128 GKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            46677654   8889999999999999999999998887 56666776655444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.99  E-value=0.05  Score=36.05  Aligned_cols=63  Identities=13%  Similarity=0.098  Sum_probs=41.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW---SKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++|+-|++.|+.-.++......++..+. ++.......   +|+..+.+..+.+++..+. .+++||+
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            4799999999999998877766554444 444444432   4555566555555555555 7778875

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=95.95  E-value=0.042  Score=34.75  Aligned_cols=49  Identities=6%  Similarity=-0.261  Sum_probs=36.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVI   50 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~   50 (83)
                      .|.+|.+.|+++.++......++..+.+.+...+.+ .++...+++....
T Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            477899999999998877778888888888777776 4555455444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.93  E-value=0.12  Score=32.99  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            7 INMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .+.++...|+.+....++..+.+.+.+.+.+
T Consensus       349 ~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       349 VRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567888899999999999999999888876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.87  E-value=0.12  Score=32.70  Aligned_cols=62  Identities=11%  Similarity=-0.006  Sum_probs=39.9

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      |..+.+.++...+.......++..+.+.....+.+ .++...|++.++..++..+..++..++
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       124 EHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34455555555555555556777777766666666 577778888888777666665444444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.87  E-value=0.014  Score=36.58  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +|.+|++.|+++.|+.+.+..++..+.+.+.+.+.+
T Consensus       354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999988

>TIGR00896 CynX cyanate transporter

Probab=95.84  E-value=0.095  Score=32.69  Aligned_cols=49  Identities=10%  Similarity=-0.032  Sum_probs=34.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-S--KTGTFSIFWVIC   51 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~~~~~   51 (83)
                      .|.+| +.|+++.++......++..+.+.+.+.+.+. +  ++..|.+.++..
T Consensus       113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~  164 (355)
T TIGR00896       113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA  164 (355)
T ss_pred             HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            35565 5799999999888889999888887777662 2  444555554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.84  E-value=0.049  Score=39.00  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAAGVAFVTFLVP   63 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   63 (83)
                      .|..|.+.|++++|+.+.+..++.++.+.+...+...  .....+.+.+.+.++..++.....|
T Consensus       348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1146)
T PRK08633        348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP  411 (1146)
T ss_pred             hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4678999999999999999988887766665544432  2223344444444443333333333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.72  E-value=0.1  Score=33.03  Aligned_cols=56  Identities=7%  Similarity=-0.060  Sum_probs=39.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      .|..|.+.++...+.......++..+.|.+...+.+ .+..+.|.+.+.+.++..+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            466777777777777777778899999999998888 55566666666655544333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.71  E-value=0.0072  Score=37.53  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             CCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFI-HHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~-~~~~~~~~~~~~~~l~~   37 (83)
                      +|++|++.|+++.++.+.. +.++..+.|.+...+.+
T Consensus       338 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       338 PELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            5889999999999986544 56778899999888888

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.67  E-value=0.025  Score=34.56  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=40.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      -|| +.|+++.++......+++++...++..+...+....+.+.+....+..+...+++
T Consensus       124 NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  124 NFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             hCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            477 4799999999999999999999988877775434444445554444444444444

>TIGR00788 fbt folate/biopterin transporter

Probab=95.63  E-value=0.068  Score=35.17  Aligned_cols=36  Identities=22%  Similarity=0.148  Sum_probs=31.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +++.|.+.+++..++...+..++..+.+.+...+.+
T Consensus       377 ~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       377 ARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             HHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999987777766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.61  E-value=0.0094  Score=36.83  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +|.+|++.|+++.|+.+.+..+++.+.+.+.+.+.+
T Consensus       336 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       336 SELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            578899999999999999999999999999888887

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.59  E-value=0.041  Score=35.21  Aligned_cols=37  Identities=5%  Similarity=-0.145  Sum_probs=33.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW   38 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~   38 (83)
                      .|..|.+.|+++.|+.+....++..+.+.+...+.+.
T Consensus       323 ~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        323 ASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            4678999999999999999999999999999999883

>PRK11462 putative transporter; Provisional

Probab=95.51  E-value=0.22  Score=32.67  Aligned_cols=64  Identities=14%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             CCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFP-INMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp-~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|+-+ .+.|.+..++-...+.++..+.+.+.+.+.. .+       +.....+++++.+++...++...+|.
T Consensus       135 ~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        135 GVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            45554 7899999999999998888888777655554 22       22334455555555544555445553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.0093  Score=39.05  Aligned_cols=68  Identities=13%  Similarity=0.099  Sum_probs=56.5

Q ss_pred             CCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783            2 AEIFPINM-KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   69 (83)
Q Consensus         2 ~Elfp~~~-R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~   69 (83)
                      ++.||.+. |++++|+.-....++..++|-.-..+.+ .+...+|.+.++++++-..+..+.++.++.++
T Consensus       185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            35677666 6999999998888999999998888888 78889999999999998888877777666555

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=95.37  E-value=0.052  Score=36.35  Aligned_cols=59  Identities=14%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783            5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   63 (83)
Q Consensus         5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (83)
                      +..|.|+.+.+++....-++.++.+.+...+.+ .++++.+++++.+.+...+.....-|
T Consensus       163 YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  163 YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999998888888 78999999999998777777666656

>PRK11010 ampG muropeptide transporter; Validated

Probab=95.35  E-value=0.19  Score=33.21  Aligned_cols=62  Identities=6%  Similarity=0.034  Sum_probs=44.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ++.|.+.+++..++.+....++..+.+.+.+.+.+ .++...|.+.++..+.+.+.. ..++++
T Consensus       343 ~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~-~~~~~~  405 (491)
T PRK11010        343 TLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLL-LVCRQT  405 (491)
T ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence            56788889999999999998888888888888888 555555665555555554444 344443

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.23  E-value=0.073  Score=34.08  Aligned_cols=55  Identities=9%  Similarity=-0.045  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783           10 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus        10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      |+...+.......++..+.+.+.+.+.+.++...|+..++..++..+..++..+|
T Consensus       139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        139 SGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             ccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence            3445566677777888888888887777666677777666666655554443443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.21  E-value=0.24  Score=33.04  Aligned_cols=66  Identities=14%  Similarity=-0.011  Sum_probs=42.8

Q ss_pred             CCCCCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHH--H--------------hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            1 MAEIFPINMKG--LAGSLVIFIHHCINWTITFTFHFMM--E--------------WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         1 ~~Elfp~~~R~--~~~s~~~~~~~~~~~~~~~~~~~l~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      ++|+.|.+.|.  .+.++.+....+++.+++.+-....  .              .+....|.+-+++.++..++..+..
T Consensus       139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v  218 (477)
T TIGR01301       139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV  218 (477)
T ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence            47899988774  5777766777777777766543321  1              1334456666666666667777778


Q ss_pred             ccCC
Q 034783           63 PETK   66 (83)
Q Consensus        63 ~et~   66 (83)
                      +|..
T Consensus       219 ~E~~  222 (477)
T TIGR01301       219 KENP  222 (477)
T ss_pred             eccC
Confidence            8854

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10504 putative transporter; Provisional

Probab=95.20  E-value=0.066  Score=34.72  Aligned_cols=36  Identities=14%  Similarity=0.053  Sum_probs=31.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .+..|.+.|+.+.|+.+....++..+.+.+...+.+
T Consensus       379 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        379 LKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999998888776

>PRK10054 putative transporter; Provisional

Probab=95.10  E-value=0.11  Score=33.30  Aligned_cols=56  Identities=14%  Similarity=-0.011  Sum_probs=38.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      +.-|++.|++..+.. ..++++..+.|.+...+.+ .+....|.+.+...++..++..
T Consensus       325 ~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        325 HIAPPGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HhCCcccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            556888998888754 4678899999999999998 4444555555555444444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.91  E-value=0.16  Score=32.10  Aligned_cols=35  Identities=3%  Similarity=-0.254  Sum_probs=29.8

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +..|.+.|++++++......++..+.+.+...+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        121 CSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45678899999999999889999999988877765

>PRK09669 putative symporter YagG; Provisional

Probab=94.76  E-value=0.35  Score=31.32  Aligned_cols=64  Identities=6%  Similarity=-0.047  Sum_probs=40.1

Q ss_pred             CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|+. +++.|.+..++......+++.+.+.+.+.+.. .       ++...+.+++++..+..+.+++..+|.
T Consensus       135 ~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        135 GAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            4665 55789988888888888888887776554443 1       122345555656555555555555553

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=94.72  E-value=0.2  Score=33.79  Aligned_cols=53  Identities=11%  Similarity=0.024  Sum_probs=42.1

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAA   53 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   53 (83)
                      ++|+.|.+.-..+.++.....++...++|.+...+.. .+....|.+.++..++
T Consensus       128 ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~  181 (524)
T PF05977_consen  128 IPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI  181 (524)
T ss_pred             HHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688999999999999999999999999999998887 5655666665544333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.70  E-value=0.037  Score=35.89  Aligned_cols=55  Identities=11%  Similarity=0.033  Sum_probs=38.6

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-hHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW---S-KTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~   58 (83)
                      |..| +.++.+.++.+..+.+++++.+.+.+.+.+.   + +...|.+.++..+++.++.
T Consensus       388 ~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       388 DLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             hcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            4444 4889999999999999999999888877752   2 3445666665555554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.58  E-value=0.22  Score=31.71  Aligned_cols=59  Identities=7%  Similarity=-0.197  Sum_probs=37.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-SKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      +++.|++..++.+..+.++..+.+.+...+.+. +.....+...+..++..++..+++++
T Consensus       338 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        338 SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            347899999999999999999999888888773 33333333333333333344344443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=94.43  E-value=0.16  Score=36.70  Aligned_cols=36  Identities=3%  Similarity=-0.126  Sum_probs=31.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .+..|.+.|++++|+.+..+.++..+.+.+...+..
T Consensus       360 ~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        360 QAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999988877765

>TIGR00895 2A0115 benzoate transport

Probab=94.03  E-value=0.091  Score=32.74  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=28.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFM   35 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l   35 (83)
                      +|.+|++.|+++.|+...+..++.++.+.+...+
T Consensus       364 ~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       364 ALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            5788999999999998888888888888776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.97  E-value=0.49  Score=29.53  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      .|.+| +.|+++.++.+...+..+.+.+.+.. +.+....+.+.++.....+..++.
T Consensus       326 ~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  380 (385)
T TIGR00710       326 LEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSCLVLAVVSVLA  380 (385)
T ss_pred             hccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHHHHHHHHHHHH
Confidence            35566 57899999988888776666666655 333333344444444444444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=93.91  E-value=0.63  Score=29.52  Aligned_cols=54  Identities=19%  Similarity=0.053  Sum_probs=39.4

Q ss_pred             CCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIF-IHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   57 (83)
                      +. |.+.|++++++.+. ...++.++.+.+.+.+.+......|+..+.+.+++.++
T Consensus       320 ~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       320 AQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             hC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45 88899999998764 45678888999999998843456677777766655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=93.90  E-value=0.046  Score=35.87  Aligned_cols=52  Identities=15%  Similarity=0.006  Sum_probs=34.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      +++.|+++.++....+.+++++.+.++. ... .++...|.+.+++.+++.+..
T Consensus       377 ~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        377 SRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             ChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            3478999999988877778877777653 111 234566777776666665554

>TIGR00900 2A0121 H+ Antiporter protein

Probab=93.79  E-value=0.11  Score=31.96  Aligned_cols=36  Identities=8%  Similarity=-0.080  Sum_probs=29.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .|..|++.|+++.|+.+....++..+.+.+.+.+.+
T Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       327 QRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888899999999988888888888888777765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.77  E-value=0.25  Score=31.41  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=43.1

Q ss_pred             CCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSL-VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         3 Elfp~~~R~~~~s~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      +.+|.+.|+++.+. .+....+++++.+.+...+.+ .+....|.+.+++..+..+...+
T Consensus       334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777766 456778899999999999988 56667777777777776665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.71  E-value=0.64  Score=29.47  Aligned_cols=48  Identities=10%  Similarity=0.024  Sum_probs=36.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 034783            7 INMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG   54 (83)
Q Consensus         7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~   54 (83)
                      .+.+++.+++.+....++..+.+.+...+.+ .+....|...+++.++.
T Consensus       335 ~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       335 GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            3889999999999999999999999999988 45445555554444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.68  E-value=0.32  Score=30.85  Aligned_cols=57  Identities=12%  Similarity=-0.026  Sum_probs=38.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +.|+++.+.....+.++.++.+.+...+.+ .++...|+..++..++. ++..+..||.
T Consensus       124 ~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~  181 (382)
T PRK11128        124 KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTI  181 (382)
T ss_pred             hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCC
Confidence            346677777888888999999999888887 57777776665543333 3333445554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=93.30  E-value=0.47  Score=31.61  Aligned_cols=53  Identities=15%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783           10 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus        10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      -+...|+....+.+++++.|.++....+  ......++.+.+..+++.++.|++.
T Consensus       400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455777778888888999988887776  3345567788888888888777654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.29  E-value=0.35  Score=31.67  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhccc
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   64 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e   64 (83)
                      |.+ |+.-.|....+..+++.+...+...+.+ .+....|.+.+.+..+..+...+..+|
T Consensus       119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            455 8888899888888899988888877777 555666777777777766666666666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=93.16  E-value=0.56  Score=29.81  Aligned_cols=53  Identities=6%  Similarity=-0.139  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783           13 AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus        13 ~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      ..+.....+.++.++.+.+...+.+.++...|++.+...++..++.+...+|+
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            44566666677778888887766666667778777777776665554444543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.96  E-value=0.46  Score=30.17  Aligned_cols=44  Identities=14%  Similarity=0.028  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 034783            7 INMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVI   50 (83)
Q Consensus         7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~   50 (83)
                      .+.|++..+.....+.++.++.+.+...+.+ .++...|.+....
T Consensus       123 ~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       123 QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            3567788888888888999999998888887 5666666665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=92.92  E-value=0.00096  Score=42.79  Aligned_cols=65  Identities=20%  Similarity=0.185  Sum_probs=39.8

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            1 MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         1 ~~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +.|..|++.|+...++......++..+...+...... .+  .|.....+..+..+..++...++||+
T Consensus       127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES  194 (451)
T PF00083_consen  127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES  194 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4699999999998888877666666666555443322 11  23344444444443444555778886

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=92.91  E-value=1.6  Score=29.29  Aligned_cols=60  Identities=17%  Similarity=0.127  Sum_probs=44.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      .++.|.+..|.-.....+++.+...+.+++.. .       +......+++++.++..+++++-.+|.
T Consensus       143 d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         143 DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            46789999999999999999999999988887 1       223345556666666666676666663

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=92.91  E-value=0.83  Score=28.60  Aligned_cols=19  Identities=37%  Similarity=0.539  Sum_probs=13.3

Q ss_pred             CCCCcchHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHH   22 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~   22 (83)
                      |..| +.|+++.++......
T Consensus       314 ~~~~-~~~g~~~~~~~~~~~  332 (377)
T PRK11102        314 DEFP-HMAGTASSLAGTLRF  332 (377)
T ss_pred             cccc-ccchHHHHHHHHHHH
Confidence            4555 788888888766544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=92.52  E-value=0.064  Score=35.36  Aligned_cols=61  Identities=15%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   62 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   62 (83)
                      .|+.|.+--+++.|+...++.+ ++.......+.+.+ .++.+.|.++.+.++++.++.....
T Consensus       372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            4888999999999999999988 77777777777777 5777777777777666666544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.03  E-value=1.9  Score=28.38  Aligned_cols=67  Identities=22%  Similarity=0.119  Sum_probs=43.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------hHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETKGRT   69 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~~~~   69 (83)
                      +|+-|...-++..++-..+.+++..+...+.-.+.+ .+        .+....+..+.. +..+....++|+.++.+
T Consensus       344 a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~-ll~l~ll~lLp~~~~~~  419 (433)
T PF03092_consen  344 ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQ-LLPLPLLFLLPPQKRIT  419 (433)
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH-HHHHHHHHHcCCCchhh
Confidence            578899999999999999999998888888776665 22        223333333333 33344445677655443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=91.56  E-value=1.2  Score=29.72  Aligned_cols=57  Identities=12%  Similarity=-0.009  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------hHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783           11 GLAGSLVIFIHHCINWTITFTFHFMME--WS-------KTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus        11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      ++..+.+...+.+++.+...+...+..  ..       ....+.+.++..++..+-..+++||.++
T Consensus       187 ~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  187 GRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            888888888888888887776555543  11       2455667777777777777778888754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=91.32  E-value=2.7  Score=27.15  Aligned_cols=48  Identities=10%  Similarity=-0.011  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 034783            9 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVA   56 (83)
Q Consensus         9 ~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   56 (83)
                      .++++.|+.....+......+....++...+....+...++++.+...
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVV  391 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            478888888888888888888887777665556666655555444333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=91.31  E-value=0.57  Score=31.39  Aligned_cols=34  Identities=12%  Similarity=0.011  Sum_probs=30.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .||++.|+.+.+++.+.|-++.++...+-|.+..
T Consensus       168 WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  168 WFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             hCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            4899999999999999999999999888777765

>PRK03699 putative transporter; Provisional

Probab=91.18  E-value=2  Score=27.35  Aligned_cols=50  Identities=2%  Similarity=-0.150  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      +.+++..++......++..+.|.+...+.+ .+....++..+++.++..+.
T Consensus       325 ~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        325 VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            345677788888888999999999999988 56666666666665555444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=90.92  E-value=1.3  Score=29.56  Aligned_cols=57  Identities=7%  Similarity=-0.006  Sum_probs=35.2

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH------hhhHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFH-----FMME------WSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~-----~l~~------~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      +.-|.+.|++.+|+-.....+++.+...+..     ....      .+....|...++.+++..++.+
T Consensus       409 ~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        409 QLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999887666677777666653     2111      1234556666665554444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=90.68  E-value=2  Score=27.49  Aligned_cols=57  Identities=7%  Similarity=-0.061  Sum_probs=38.2

Q ss_pred             CCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINM-KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         3 Elfp~~~-R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      |.-|.+. ++++.|+.+....++..+...++..+...+....+.+.+...++...+.+
T Consensus       320 ~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        320 HRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            3444544 79999999999999999988888866555555555554444444444433

>TIGR00788 fbt folate/biopterin transporter

Probab=90.26  E-value=1.4  Score=29.16  Aligned_cols=53  Identities=13%  Similarity=-0.073  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783           13 AGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus        13 ~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      ..++.+....++..+.+.+...+.+ .++...|++.++..++. .+...+++|.+
T Consensus       159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            3444555555788888888887777 56777777777776666 44456778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=89.55  E-value=4.2  Score=26.45  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=24.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            7 INMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         7 ~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      .+.++...|+.+....++..+.+.+...+.+
T Consensus       357 ~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        357 VRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888888888899999998888877765

>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components

Probab=89.18  E-value=2.6  Score=23.71  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=18.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCIN   25 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~   25 (83)
                      .|++|++.|....+......+...
T Consensus        61 kdi~P~~~R~~i~~~~~~~~~~~k   84 (137)
T PF04281_consen   61 KDIFPPSVRNWISSTVSTTSSAVK   84 (137)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHH
Confidence            589999999999888765554433

These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=89.18  E-value=1.5  Score=27.78  Aligned_cols=31  Identities=3%  Similarity=0.030  Sum_probs=16.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            4 IFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         4 lfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +.|.+.|.   +.......++..+.+.+.+.+..
T Consensus       318 ~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        318 LGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             hccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            34544443   33334445566666666666665

>PRK10091 MFS transport protein AraJ; Provisional

Probab=88.55  E-value=4.6  Score=25.64  Aligned_cols=49  Identities=8%  Similarity=-0.197  Sum_probs=29.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHH
Q 034783            5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGV   55 (83)
Q Consensus         5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~   55 (83)
                      .|.+.++.+  .......+++++.|.+...+.+ . +....+.+.+.++.+..
T Consensus       319 ~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        319 KGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             CcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence            344444443  4466678899999999998888 3 34445554444444433

>PRK11462 putative transporter; Provisional

Probab=88.25  E-value=5.6  Score=26.27  Aligned_cols=31  Identities=10%  Similarity=-0.090  Sum_probs=21.4

Q ss_pred             cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 034783            7 INMKGLAGSLV--IFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         7 ~~~R~~~~s~~--~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +..|..|..++  .....++..+.+.+...+++
T Consensus       354 tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        354 NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666444  47788888888888777765

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=87.99  E-value=5  Score=28.11  Aligned_cols=54  Identities=19%  Similarity=0.154  Sum_probs=39.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 034783            5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      .|.+.|+.+.++......++++++..+++.-.....+.-|+.++.+.++.+++.
T Consensus       594 ~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  647 (654)
T TIGR00926       594 APPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVMAIF  647 (654)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence            488899999999998888999888888765554444556666666665555543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.95  E-value=5.9  Score=26.24  Aligned_cols=36  Identities=11%  Similarity=0.102  Sum_probs=32.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +|+-|++.|+++.++.+..--++.++...++..+.+
T Consensus       115 ~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen  115 ADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             HhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            578899999999999999998898888888888877

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.77  E-value=3  Score=22.58  Aligned_cols=52  Identities=8%  Similarity=0.123  Sum_probs=36.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME---WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~   57 (83)
                      ..+.++.+.++-...-.+.+.++...+.++.+   ...+|...++.++.+...++
T Consensus        36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l   90 (116)
T COG5336          36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL   90 (116)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            35667788888888888999999999999998   33455555555555544444

>PRK11043 putative transporter; Provisional

Probab=87.75  E-value=3.2  Score=26.36  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=27.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      |.+| +.|+++.|+.+..+..++...+.+.+.+.+
T Consensus       323 ~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        323 RPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             hhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3445 579999999999888888888888887776

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=87.41  E-value=3.3  Score=26.40  Aligned_cols=50  Identities=4%  Similarity=-0.138  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783            8 NMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus         8 ~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      +.|.++....+.+.++++.+.....+++.+ .++...|.+-++..+++.+.
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            467778888899999999999999999988 56556666655555554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=87.30  E-value=3.2  Score=27.88  Aligned_cols=57  Identities=11%  Similarity=0.022  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783           11 GLAGSLVIFIHHCINWTITFTFHFMME---WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus        11 ~~~~s~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +.-+|+-+..--+-..+.....+.+..   .+....+.+-++..+++++.+++.+|+++.
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            666777777777777777776666554   223445666666777777788888998765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=87.19  E-value=0.15  Score=34.15  Aligned_cols=48  Identities=8%  Similarity=-0.048  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHH
Q 034783           10 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   57 (83)
Q Consensus        10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   57 (83)
                      |..+.++.++.-++++++.|.+.+++.+ .++...|...++-...+.+.
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            7778888888889999999999999998 66666666666665555444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=86.91  E-value=6.8  Score=25.82  Aligned_cols=64  Identities=5%  Similarity=-0.142  Sum_probs=36.3

Q ss_pred             CCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------hHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIF-PINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elf-p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|+- ..+.|.+..++-.....+++.+.+.+.+.+.. .+       ......+++++..+..+.+++..+|.
T Consensus       132 ~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        132 PTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            5666 58899998888777666666666555443332 11       12233444444444444555556664

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=86.64  E-value=1.1  Score=29.85  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=32.4

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +++.|.+.-++-.|+.+..++..+++.|+....+.+
T Consensus       367 ~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         367 ARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             HHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            467788888899999999999999999999998888

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=86.38  E-value=4  Score=27.66  Aligned_cols=60  Identities=7%  Similarity=-0.181  Sum_probs=37.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-----------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            6 PINMKGLAGSLVIFIHHCINWTITFTFHFMME---W-----------SKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         6 p~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      -.+.|.++.+......-++.+++|.+-+.+..   .           ....+-|+....+++..++..++++|.
T Consensus       159 ~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  159 TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            45677788777766555555555555443332   1           113456777778888888888888874

>PRK10133 L-fucose transporter; Provisional

Probab=86.06  E-value=7.5  Score=25.48  Aligned_cols=33  Identities=6%  Similarity=-0.173  Sum_probs=24.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFM   35 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l   35 (83)
                      |..|.+.|...+++......++..+.+.+...+
T Consensus       144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666778888888888888888775544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.00  E-value=2  Score=27.81  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=32.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      +-+.|.+.-+++.++...+.+++-++++.+...+.+
T Consensus       378 a~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d  413 (459)
T KOG4686|consen  378 ASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD  413 (459)
T ss_pred             hhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence            456788899999999999999999999999998888

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=85.59  E-value=1.9  Score=29.82  Aligned_cols=57  Identities=21%  Similarity=0.276  Sum_probs=42.4

Q ss_pred             CCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV   58 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   58 (83)
                      +...|++.|.++.++..... .++-.+..++-..+.. .+..-.|.++++.+++..++.
T Consensus       485 s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  485 SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence            34679999999999997766 5566667777676766 666778888888777766553

>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22

Probab=85.27  E-value=4.9  Score=22.80  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=17.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCI   24 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~   24 (83)
                      .|+||+..|....+......+..
T Consensus        59 kDm~Pp~~R~~i~~~~s~t~s~~   81 (145)
T TIGR00986        59 KDIVPPTTRGWIYHKYSTTTNFV   81 (145)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999988776555443

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=84.24  E-value=3.9  Score=21.78  Aligned_cols=34  Identities=12%  Similarity=-0.109  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783           39 SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   72 (83)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~   72 (83)
                      ++..++++...++++...+.+.+.||++-.+..+
T Consensus        58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~   91 (105)
T PF10183_consen   58 GWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWAR   91 (105)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            3344444444444455555567789988876543

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=84.18  E-value=1.9  Score=26.40  Aligned_cols=28  Identities=21%  Similarity=0.075  Sum_probs=24.8

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTIT   29 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~   29 (83)
                      .|..|++.|+++.|+....+.+++.+.|
T Consensus       325 ~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  325 QELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4778999999999999999999888775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=83.12  E-value=9.7  Score=24.35  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +.+|.+.    .++....+.++..+...+...+.+ .++...|.+.+.++.+..++. ...+.+
T Consensus       334 ~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~-~~~~~~  392 (402)
T PRK11902        334 RSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL-WLMRGT  392 (402)
T ss_pred             CCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence            4455443    344444445555555556677777 566666666666665554443 334433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=82.93  E-value=11  Score=25.21  Aligned_cols=58  Identities=9%  Similarity=0.085  Sum_probs=37.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-----------EWSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      +..|.+.++.++++......+++.+...+.....           +....+.|...++..++..++.+.
T Consensus       406 ~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        406 ALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999999998888888877776653331           111234555566655555555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=81.55  E-value=12  Score=24.82  Aligned_cols=50  Identities=6%  Similarity=-0.002  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHH
Q 034783           10 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus        10 R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~   59 (83)
                      -+.-.+++..++.+..++.|.++..+.| .+ +......+....++..+..+
T Consensus       331 Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         331 AAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            3444677778889999999999999999 44 33344445555555444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=81.48  E-value=4.6  Score=26.21  Aligned_cols=35  Identities=14%  Similarity=-0.009  Sum_probs=30.7

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            3 EIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         3 Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      |..|++.|+++.++.+....+++.+.+.+...+.+
T Consensus       375 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       375 SGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             hcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55799999999999999999999999888887776

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=80.04  E-value=5.6  Score=25.77  Aligned_cols=33  Identities=18%  Similarity=0.056  Sum_probs=23.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034783            5 FPINMKGLAGSLVIFIHHCINWTITFTFHFMME   37 (83)
Q Consensus         5 fp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~   37 (83)
                      |....|..++|+.+.+.-..+....-+.|++.+
T Consensus        90 fGl~mryLGvSLG~sI~lGl~~~~GTlippi~~  122 (344)
T PF06379_consen   90 FGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQ  122 (344)
T ss_pred             HhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHc
Confidence            456789999999988886655555555566653

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	83
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 1   MAEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKT-----GTFSIFWVICAAGV 55
           ++EIFP  ++G A ++ +      N+ +++TF  M + S         FS +W+    GV
Sbjct: 395 LSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS-YWIYGCMGV 453
Query: 56  AFVTFL---VPETKGRTLEEIQA 75
               F+   VPETKG+TLEE++A
Sbjct: 454 LAALFMWKFVPETKGKTLEELEA 476
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.78
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.2
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.1
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.03
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.94
2xut_A	524	Proton/peptide symporter family protein; transport	97.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.67
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.64
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.47
2xut_A	524	Proton/peptide symporter family protein; transport	97.26
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.84
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	93.88

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.78  E-value=4.2e-19  Score=111.77  Aligned_cols=81  Identities=28%  Similarity=0.463  Sum_probs=69.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ   74 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~   74 (83)
                      +|+||++.|++++|+++.++|+++++.++++|.+.+       .+....|+++++++++..++.++++|||||+++||+|
T Consensus       396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            699999999999999999999999999999998764       2334578899999999999999999999999999999


Q ss_pred             HHHhhccC
Q 034783           75 ASITKLSR   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      +.++++++
T Consensus       476 ~~f~~~~~  483 (491)
T 4gc0_A          476 ALWEPETK  483 (491)
T ss_dssp             GGTC----
T ss_pred             HHhCCCCc
Confidence            88866543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.20  E-value=1.1e-06  Score=54.88  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             CCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 034783            2 AEIFPINMKGLAGSLV-IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   70 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~   70 (83)
                      +|.+|++.|+++.++. ...+++++++.|.+.+.+.+ .+....|.+.+++.+++.+..+...+|++..++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            5889999999999995 67788999999999998887 455566777777777777766666787665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.10  E-value=6.6e-06  Score=51.03  Aligned_cols=65  Identities=11%  Similarity=0.017  Sum_probs=55.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETK   66 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~et~   66 (83)
                      +|.+|.+.|+++.++......++.++.+.+...+.+ .+ +.+.|++.+++.++..++.++.+||+.
T Consensus       145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T 1pw4_A          145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  211 (451)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            689999999999999999999999999999888777 56 778888888888887777777788754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.03  E-value=8.9e-07  Score=55.77  Aligned_cols=67  Identities=13%  Similarity=0.045  Sum_probs=51.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      .|.+|++.|+++.|+.+....+++++.+.+.+.+.+.+....|..+++++++..+..++..++.++.
T Consensus       412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998877775666778888888888777777767776554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.94  E-value=3.7e-06  Score=52.17  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      .|.+|++.|+++.|+.+....+ +.++.+.+.+.+.+ .+....+.+.+++.++..++.++
T Consensus       372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999 99999999999988 56667777777777776665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.89  E-value=4e-06  Score=53.26  Aligned_cols=71  Identities=10%  Similarity=-0.072  Sum_probs=44.9

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--h---------HHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW-S--K---------TGTFSIFWVICAAGVAFVTFLVPETKGRT   69 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~-~--~---------~~~~~~~~~~~~~~~~~~~~~~~et~~~~   69 (83)
                      +|..|++.|++++|+.+....+++++.+.+.+.+.+. +  +         ...|++++++.++..++.++..+++++++
T Consensus       431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4778999999999999999999999999998887651 1  1         12266677777776666666677776665


Q ss_pred             HHH
Q 034783           70 LEE   72 (83)
Q Consensus        70 ~~~   72 (83)
                      .++
T Consensus       511 ~~~  513 (524)
T 2xut_A          511 HYR  513 (524)
T ss_dssp             ---
T ss_pred             hhh
Confidence            544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.67  E-value=5.9e-06  Score=50.38  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   67 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~   67 (83)
                      +|.+|++.|+++.++......++..+.+.+...+.+ .++...+.+.++...+..+..++.+||++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            577899999999999999999999999999887776 566777887777777766655667788654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.64  E-value=0.00026  Score=44.52  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=44.9

Q ss_pred             CCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINM--KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   60 (83)
Q Consensus         2 ~Elfp~~~--R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   60 (83)
                      +|++|.+.  |+.+.++.+....++..+.+.+...+.+ .++.+.|.+.++..++..+...+
T Consensus       134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            57899988  6677777778889999999999888887 66777777776666555554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.47  E-value=0.00042  Score=42.84  Aligned_cols=66  Identities=8%  Similarity=-0.017  Sum_probs=48.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-h-------------------------hHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMM-EW-S-------------------------KTGTFSIFWVICAAG   54 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~-~~-~-------------------------~~~~~~~~~~~~~~~   54 (83)
                      +|.+|.+.|+++.++......++..+.+.+...+. .. +                         +.+.|.+.+....+.
T Consensus       143 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  222 (438)
T 3o7q_A          143 TVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLV  222 (438)
T ss_dssp             HHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999988887 32 2                         456666666665555


Q ss_pred             HHHHHH-hcccCCC
Q 034783           55 VAFVTF-LVPETKG   67 (83)
Q Consensus        55 ~~~~~~-~~~et~~   67 (83)
                      .+..++ ..||++.
T Consensus       223 ~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          223 ALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHCCCCCCTT
T ss_pred             HHHHHHHcCCcccc
Confidence            554333 3465443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.26  E-value=0.00058  Score=43.34  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             CCCCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSL---VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   59 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   59 (83)
                      +|.+|++.|+++.++   ......++..+.+.+...+.+ .++.+.|.+.++..++..+...
T Consensus       135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            588999999776666   778888899999988888877 5667777777666555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.84  E-value=0.0096  Score=37.36  Aligned_cols=64  Identities=19%  Similarity=0.099  Sum_probs=39.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEW--------SKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|..|++.|++..++......++..+...+.......        .++........+..+..++..+++||+
T Consensus       152 ~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS  223 (491)
T 4gc0_A          152 AELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES  223 (491)
T ss_dssp             HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred             HhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence            6999999999999988777766666666654444331        112223333333344444555678886

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.37  E-value=0.011  Score=36.37  Aligned_cols=47  Identities=9%  Similarity=-0.024  Sum_probs=35.5

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHH
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVI   50 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~   50 (83)
                      .|.+|++ |+.+.++.. .+.+++++.+.+.+.+.+ .+ ....|.+.++.
T Consensus       373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4778877 888888877 678999999999999988 44 45555554433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=93.88  E-value=0.026  Score=34.17  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=31.6

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMMEWS   39 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~~~   39 (83)
                      .|.+| +.|+++.|+.+....++..+.+.+...+.+.+
T Consensus       317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46778 89999999999999999999999888877633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.11
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.85
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	94.85

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=3.2e-07  Score=53.91  Aligned_cols=71  Identities=8%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             CCCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 034783            2 AEIFPINMKGLAGSLVIF-IHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   72 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~   72 (83)
                      +|.+|++.|+++.++... .+.++.++.+.+.+.+.+ .+....|++.+++.++..++..+.+++++..+..+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            578999999999998654 567889999999999998 67777888999998888888888888888877754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=9.2e-07  Score=53.08  Aligned_cols=62  Identities=11%  Similarity=0.130  Sum_probs=47.2

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhcc
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCI-NWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   63 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~-~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (83)
                      +|.+|++.|+++.|+.+..++++ .++.+.+.+.+.+ .+....+.++++..++..++.+...+
T Consensus       369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999888875 4556788888888 56666777777777766666555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.6e-05  Score=47.51  Aligned_cols=64  Identities=11%  Similarity=-0.019  Sum_probs=51.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhcccC
Q 034783            2 AEIFPINMKGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPET   65 (83)
Q Consensus         2 ~Elfp~~~R~~~~s~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et   65 (83)
                      +|.+|.+.|++++++......++..+.+.+...+..  .++.+.+++.+...++..++.+..++++
T Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            588999999999999999999999999888777666  3556677777777777777777776654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.038  Score=31.54  Aligned_cols=56  Identities=5%  Similarity=-0.193  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 034783           13 AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR   68 (83)
Q Consensus        13 ~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~   68 (83)
                      +.+........+..+.+.+...+.+..++..+........+..+...+..+|+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred             HHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccc
Confidence            44455555566667777777777776666667777666666667766777765433