Citrus Sinensis ID: 034814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MPKEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQKN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHcccEEEEcccccc
Coil and Loop (DISEMBL)
mpkepmsefdVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLlyndsfhatspgePALLVIKDMisegslslsfntyqkn
Flexible Loop (DISEMBL)
mpkepmsefDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISegslslsfntyqkn
Low Complexity Region (SEG)
MPKEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQKN
Disordered region (IsUnstruct)
*********DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMIS**************
Disordered Region (DISOPRED)
*****MS*FDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFN*Y***
Disordered Region (DISEMBL)
********FDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQKN
Disordered Region (DISPRO)
****PMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPKEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSLSLSFNTYQKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.756	0.161	0.444	2e-07
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.743	0.158	0.453	8e-07
Q9AVJ9	378	Monomethylxanthine methyl	N/A	no	0.756	0.164	0.444	2e-06
Q84PP7	384	Monomethylxanthine methyl	N/A	no	0.756	0.161	0.428	2e-06
Q8H0G0	384	Theobromine synthase 2 OS	N/A	no	0.756	0.161	0.428	2e-06
Q8H0D2	384	3,7-dimethylxanthine N-me	N/A	no	0.756	0.161	0.412	6e-06
A4GE70	384	3,7-dimethylxanthine N-me	N/A	no	0.756	0.161	0.412	7e-06
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.804	0.177	0.402	9e-06
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.804	0.177	0.402	9e-06
Q8H0D3	384	Caffeine synthase 1 OS=Co	N/A	no	0.756	0.161	0.412	1e-05

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLY-NDSFHATSPGEPALLVIKDMISE 69
           V +AYLDQF  DF+ FL+ RSEEL   GRM+LT +   D F   +  +   + I D++ E
Sbjct: 193 VQKAYLDQFTKDFTTFLRIRSEELLSRGRMLLTCICKGDEFDGPNTMDLLEMAINDLVVE 252

Query: 70  GSL 72
           G L
Sbjct: 253 GHL 255

May be involved in the biosynthesis of caffeine.
Coffea arabica (taxid: 13443)

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL--VIKDMIS 68
           V +AYLDQF  DF+ FL+ RSEEL   GRM+LT +         P    LL   I D+++
Sbjct: 193 VQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGD-ECDGPNTMDLLEMAINDLVA 251

Query: 69  EGSL 72
           EG L
Sbjct: 252 EGRL 255

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           V +AYLDQF  DF+ FL+  S+EL   GRM+LT +   D F   +P +   + I D+I E
Sbjct: 192 VQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVDEFDEPNPLDLLDMAINDLIVE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GLL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of paraxanthine to caffeine. Has a 5-fold preference for 7mX.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           V +AYLDQF  DF+ FL+  S+EL   GRM+LT +   D +   +P +   + I D+I E
Sbjct: 192 VQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVDEYDEPNPLDLLDMAINDLIVE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and with a lower activity of paraxanthine to caffeine.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           V +AYLDQF  DF+ FL+  S+EL   GRM+LT +   D +   +P +   + I D+I E
Sbjct: 192 VQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVDEYDEPNPLDLLDMAINDLIVE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine. Does not have 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           + +AYLDQF  DF+ FL+  SEEL   GRM+LT +   D F   +  +   + I D++ E
Sbjct: 192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTWICKEDEFENPNSIDLLEMSINDLVIE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of paraxanthine to caffeine. Can also convert 7-methylxanthine to theobromine and theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|A4GE70|DXMT1_COFCA 3,7-dimethylxanthine N-methyltransferase OS=Coffea canephora GN=DXMT1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           + +AYLDQF  DF+ FL+  SEEL   GRM+LT +   D F   +  +   + I D++ E
Sbjct: 192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine to theobromine and of theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 7   SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-SFHATSPGEPALLVIKD 65
           S   V +AYLDQF  DF+ FL+  SEEL   GRM+LT +       A +  +   + I D
Sbjct: 189 SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARNAIDLLEMAIND 248

Query: 66  MISEGSL 72
           ++ EG L
Sbjct: 249 LVVEGHL 255

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 7   SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-SFHATSPGEPALLVIKD 65
           S   V +AYLDQF  DF+ FL+  SEEL   GRM+LT +       A +  +   + I D
Sbjct: 189 SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARNAIDLLEMAIND 248

Query: 66  MISEGSL 72
           ++ EG L
Sbjct: 249 LVVEGHL 255

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q8H0D3|CCS1_COFAR Caffeine synthase 1 OS=Coffea arabica GN=CCS1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           + +AYLDQF  DF+ FL+  SEEL   GRM+LT +   D F   +  +   + I D++ E
Sbjct: 192 IKKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE 251

Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
296085034	226	unnamed protein product [Vitis vinifera]	0.731	0.265	0.5	4e-08
225447527	383	PREDICTED: probable caffeine synthase 4-	0.792	0.169	0.444	2e-07
296085033	549	unnamed protein product [Vitis vinifera]	0.792	0.118	0.444	2e-07
356506834	273	PREDICTED: monomethylxanthine methyltran	0.731	0.219	0.508	2e-06
15237696	385	S-adenosyl-L-methionine-dependent methyl	0.792	0.168	0.425	3e-06
356566925	369	PREDICTED: salicylate O-methyltransferas	0.743	0.165	0.483	3e-06
356531941	362	PREDICTED: 7-methylxanthosine synthase 1	0.731	0.165	0.483	5e-06
356509559	340	PREDICTED: theobromine synthase 2-like [	0.731	0.176	0.475	7e-06
255587606	375	Jasmonate O-methyltransferase, putative	0.731	0.16	0.461	9e-06
269974854	355	S-adenosyl-L-methionine:nicotinic acid c	0.768	0.177	0.411	9e-06

>gi|296085034|emb|CBI28449.3| unnamed protein product [Vitis vinifera]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEG 70
           VHRAYL+QF+ DF+AFLK RS+E+  GGRM+LTLL ++  H     E   + + D++ EG
Sbjct: 43  VHRAYLNQFERDFTAFLKLRSQEIIPGGRMLLTLLGSEPKHFCKIWELISISLNDLVIEG 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447527|ref|XP_002267308.1| PREDICTED: probable caffeine synthase 4-like [Vitis vinifera]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 7/72 (9%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-------EPALLVI 63
           VH+AYL+QF+ DF+AFL+ RS+E+  GG M+LTLL +D     S         E   + +
Sbjct: 188 VHKAYLNQFERDFTAFLRLRSQEIIPGGHMLLTLLGSDGNGQNSSTDGLYKICELISMTL 247

Query: 64  KDMISEGSLSLS 75
           KDM++EGS+  S
Sbjct: 248 KDMVTEGSIQES 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085033|emb|CBI28448.3| unnamed protein product [Vitis vinifera]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 7/72 (9%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-------EPALLVI 63
           VH+AYL+QF+ DF+AFL+ RS+E+  GG M+LTLL +D     S         E   + +
Sbjct: 188 VHKAYLNQFERDFTAFLRLRSQEIIPGGHMLLTLLGSDGNGQNSSTDGLYKICELISMTL 247

Query: 64  KDMISEGSLSLS 75
           KDM++EGS+  S
Sbjct: 248 KDMVTEGSIQES 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506834|ref|XP_003522180.1| PREDICTED: monomethylxanthine methyltransferase 2-like, partial [Glycine max]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFH-ATSPGEPALLVIKDMISE 69
           V +AYL+QF+ DFS FLK RS+ELK GG M+LT    +  H  T P     +++KDMI E
Sbjct: 94  VFKAYLEQFQRDFSFFLKSRSDELKVGGIMVLTFQGREKAHEITHPLVVIGMLLKDMILE 153

Query: 70  G 70
           G
Sbjct: 154 G 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237696|ref|NP_196058.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332003352|gb|AED90735.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 15/80 (18%)

Query: 5   PMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTL---------LYNDSFHATSP 55
           P+SE+   +AYL+QFK DF+ FL+ RSEE+   GRM+LTL         LY D  H  + 
Sbjct: 200 PLSEY---KAYLNQFKRDFTTFLRMRSEEMVHNGRMVLTLIGRNTLDNPLYRDCCHCWTL 256

Query: 56  GEPALLVIKDMISEGSLSLS 75
              +L   +D++ EG LS S
Sbjct: 257 LSNSL---RDLVFEGLLSAS 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566925|ref|XP_003551675.1| PREDICTED: salicylate O-methyltransferase-like [Glycine max]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-EPALLVIKDMIS 68
           +V++AYL QF+ DF  FLK RS+EL  GG M+L LL  +    T  G EP  L++ DM  
Sbjct: 188 EVYKAYLKQFQQDFKLFLKSRSKELVPGGAMLLVLLGRNEIPPTVNGWEPISLILNDMFL 247

Query: 69  EG 70
           EG
Sbjct: 248 EG 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531941|ref|XP_003534534.1| PREDICTED: 7-methylxanthosine synthase 1-like [Glycine max]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEG 70
           V++AYL QF+ DF  FLK RSEEL  GG M+L  L  +  H  +  E   LV+ DM+ EG
Sbjct: 188 VYQAYLKQFQQDFKFFLKSRSEELVPGGAMVLLFLGKNKTHRRTGWEIISLVLNDMLLEG 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509559|ref|XP_003523515.1| PREDICTED: theobromine synthase 2-like [Glycine max]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-SFHATSPGEPALLVIKDMIS 68
           +V++AYLDQF  DF+ FLK R+EEL  GG M+LT +  D +    +P     LV+ DM+S
Sbjct: 159 EVYQAYLDQFSQDFNLFLKSRAEELVRGGGMVLTFVGRDETCDIITPWGLIGLVLNDMVS 218

Query: 69  E 69
           E
Sbjct: 219 E 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587606|ref|XP_002534327.1| Jasmonate O-methyltransferase, putative [Ricinus communis] gi|223525486|gb|EEF28055.1| Jasmonate O-methyltransferase, putative [Ricinus communis]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLY--NDSFHATSPGE--PAL-LVIKD 65
           VH+AYLDQF+ DF+  LK RSEE+  GG MILT+    ND+ +     E  P + + + D
Sbjct: 192 VHKAYLDQFERDFTTLLKLRSEEIVPGGHMILTITAKNNDNPYCKYGSEFWPLIGMTLND 251

Query: 66  MISEG 70
           M+ EG
Sbjct: 252 MVEEG 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269974854|gb|ACZ55224.1| S-adenosyl-L-methionine:nicotinic acid carboxyl methyltransferase [Nicotiana gossei]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-----EPALLVIK 64
           DV  AY +Q++ DF  FLK RS EL  GGRM+LT++  ++    S       EP ++ +K
Sbjct: 183 DVVEAYYEQYERDFLNFLKLRSIELVKGGRMVLTVMGRNNEDRVSKASCYLLEPMVMALK 242

Query: 65  DMISEGSL 72
           ++I+EGS+
Sbjct: 243 ELIAEGSI 250

Source: Nicotiana gossei

Species: Nicotiana gossei

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.792	0.168	0.425	3.5e-07
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.804	0.186	0.388	1.7e-06
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.841	0.166	0.373	2.9e-06
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.792	0.171	0.389	8.7e-06
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.792	0.181	0.425	1.7e-05
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.524	0.110	0.511	6.7e-05
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.707	0.157	0.405	0.0001
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.487	0.107	0.5	0.00017
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.439	0.097	0.5	0.00058

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 34/80 (42%), Positives = 47/80 (58%)

Query:     5 PMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTL---------LYNDSFHATSP 55
             P+SE+   +AYL+QFK DF+ FL+ RSEE+   GRM+LTL         LY D  H  + 
Sbjct:   200 PLSEY---KAYLNQFKRDFTTFLRMRSEEMVHNGRMVLTLIGRNTLDNPLYRDCCHCWTL 256

Query:    56 GEPALLVIKDMISEGSLSLS 75
                +L   +D++ EG LS S
Sbjct:   257 LSNSL---RDLVFEGLLSAS 273

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 28/72 (38%), Positives = 44/72 (61%)

Query:    10 DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL----YNDSFHATSPGEPALLV--I 63
             + ++AYL+QF+SDF +FL+ RSEE+   GRM+LT +     +D  H        LL   +
Sbjct:   169 NAYKAYLNQFQSDFKSFLEMRSEEMVSNGRMVLTFIGRKTLDDPLHRDCCHFWTLLSTSL 228

Query:    64 KDMISEGSLSLS 75
             +D++ EG +S S
Sbjct:   229 RDLVYEGLVSAS 240

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query:     7 SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL----YNDSFHATSPGEPALLV 62
             S    ++AYL+QF+ DF+ FLK RSEE+   GRM+LT +     ++  H        LL 
Sbjct:   226 SPLSTYKAYLNQFQRDFATFLKLRSEEMVSNGRMVLTFIGRNTIDNPLHRDCCHFWTLLS 285

Query:    63 --IKDMISEGSLSLS 75
               ++D+++EG +S S
Sbjct:   286 KSLRDLVAEGLVSAS 300

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query:    12 HRAYLDQFKSDFSAFLKFRSEELKCGGRMILTL---------LYNDSFHATSPGEPAL-- 60
             ++AYL+QF+ DF+ FL+ RSEE+   GRM+LT          LY D  H  +    +L  
Sbjct:   203 YKAYLNQFQKDFTMFLRLRSEEIVSNGRMVLTFIGRNTLNDPLYRDCCHFWTLLSNSLRD 262

Query:    61 LVIKDMISEGSLSLSFN 77
             LV + ++SE  L  +FN
Sbjct:   263 LVFEGLVSESKLD-AFN 278

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 34/80 (42%), Positives = 43/80 (53%)

Query:    10 DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTL--------LYNDSFHATSPGEPALL 61
             +V+++YL+QFK DFS FLK RSEE+   G M+LT         L  D F   S     LL
Sbjct:   171 NVYKSYLNQFKIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQVWSLLSDCLL 230

Query:    62 VIKDMISEG----SLSLSFN 77
                D+ SEG    S+  SFN
Sbjct:   231 ---DLASEGFVNDSMVKSFN 247

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query:    12 HRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATS 54
             H+AY  QF++DF  FL+ RSEEL  GGRM+L+ L   S   T+
Sbjct:   201 HKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSLDPTT 243

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query:    10 DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTL--------LYNDSFHATSPGEPALL 61
             +V+++YL QFK+DFS FL+ R++E    GRM LT         L  D F   S    +LL
Sbjct:   176 NVYKSYLTQFKNDFSLFLRLRADETVPNGRMALTFVGRKSLDPLSKDCFQNWSSISDSLL 235

Query:    62 VIKDMISEG 70
                D++SEG
Sbjct:   236 ---DLVSEG 241

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query:     6 MSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL 45
             +S   V +AY  QFK DFS FL+ RS+E+   GRM+L +L
Sbjct:   189 LSSEAVSKAYCSQFKEDFSIFLRCRSKEMVSAGRMVLIIL 228

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00058, P = 0.00058
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query:    10 DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL 45
             +++ +Y +QFK DFS FL+ R+EE    GRM LTL+
Sbjct:   176 NLYESYWNQFKKDFSMFLRMRAEETMPSGRMALTLV 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.41    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  95 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.63u 0.20s 8.83t   Elapsed:  00:00:00
  Total cpu time:  8.63u 0.20s 8.83t   Elapsed:  00:00:00
  Start:  Mon May 20 17:48:48 2013   End:  Mon May 20 17:48:48 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	9e-12
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	1e-05

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score = 58.1 bits (141), Expect = 9e-12
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 11/68 (16%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL--------YNDSFHATSPGEPALLV 62
           V++AYLDQFK DFS FL+ R+EEL  GG M+LT L          +          AL  
Sbjct: 147 VYKAYLDQFKKDFSLFLRARAEELVSGGLMVLTFLGRPSVDPSETECGIFWDLLGDALN- 205

Query: 63  IKDMISEG 70
             D++SEG
Sbjct: 206 --DLVSEG 211

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 14  AYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL 61
           AY  QF++D + FL+ R++E+K GG M L  L   S   T  G   LL
Sbjct: 207 AYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLL 254

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	99.96
PLN02668	386	indole-3-acetate carboxyl methyltransferase	99.96
PRK10079	241	phosphonate metabolism transcriptional regulator P	86.86
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	82.65

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=99.96  E-value=4.1e-30  Score=193.09  Aligned_cols=79  Identities=43%  Similarity=0.574  Sum_probs=67.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc-----HHHHHHHHHHHHcCCccc----
Q 034814            4 EPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-----EPALLVIKDMISEGSLSL----   74 (82)
Q Consensus         4 ~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-----~~l~~al~dmv~eGli~~----   74 (82)
                      +++++++|.+||++||++||.+||++||+||||||+|||+++||++.++.+..     ++|+++|+|||.||+|++    
T Consensus       143 ~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~d  222 (334)
T PF03492_consen  143 SRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVD  222 (334)
T ss_dssp             STTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCC
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhh
Confidence            35889999999999999999999999999999999999999999996665432     999999999999999999    


Q ss_pred             ccccCCCC
Q 034814           75 SFNTYQKN   82 (82)
Q Consensus        75 sFn~P~y~   82 (82)
                      +||+|+|.
T Consensus       223 sfniP~Y~  230 (334)
T PF03492_consen  223 SFNIPIYF  230 (334)
T ss_dssp             TG--SBB-
T ss_pred             ceeCCccC
Confidence            99999994

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=99.96  E-value=3.2e-29  Score=192.36  Aligned_cols=76  Identities=32%  Similarity=0.444  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc------HH-HHHHHHHHHHcCCccc----c
Q 034814            7 SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG------EP-ALLVIKDMISEGSLSL----S   75 (82)
Q Consensus         7 s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~------~~-l~~al~dmv~eGli~~----s   75 (82)
                      ++++|.+||++||++||..||++||+||||||+|||+++||++.++..++      ++ ++++|+|||.||+|++    +
T Consensus       200 ~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~ds  279 (386)
T PLN02668        200 ASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDS  279 (386)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence            44889999999999999999999999999999999999999887766432      34 9999999999999999    9


Q ss_pred             cccCCCC
Q 034814           76 FNTYQKN   82 (82)
Q Consensus        76 Fn~P~y~   82 (82)
                      ||+|+|.
T Consensus       280 FniP~Y~  286 (386)
T PLN02668        280 FNIPVYA  286 (386)
T ss_pred             ccCcccC
Confidence            9999994

>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional

Probab=86.86  E-value=0.4  Score=34.00  Aligned_cols=49  Identities=10%  Similarity=0.270  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc-----HHHHHHHHHHHHcCCccc
Q 034814           16 LDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-----EPALLVIKDMISEGSLSL   74 (82)
Q Consensus        16 ~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-----~~l~~al~dmv~eGli~~   74 (82)
                      ..|.+.++..-++  + ++.||.+|       ++....+..     ..+.+|+.+|++||+|..
T Consensus        14 Y~qi~~~L~~~I~--~-~~~~G~~L-------PsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r   67 (241)
T PRK10079         14 YQEIAAKLEQELR--Q-HYRCGDYL-------PAEQQLAARYEVNRHTLRRAIDQLVEKGWVQR   67 (241)
T ss_pred             HHHHHHHHHHHHh--c-ccCCCCcC-------CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence            3677788877774  4 89999886       444332221     789999999999999977

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=82.65  E-value=1.2  Score=33.87  Aligned_cols=28  Identities=32%  Similarity=0.414  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhhhhhhcCceEEEEeeecC
Q 034814           21 SDFSAFLKFRSEELKCGGRMILTLLYND   48 (82)
Q Consensus        21 ~D~~~FL~~Ra~ELv~GG~mvl~~~gr~   48 (82)
                      +|...||++=++=|+|||+++++..-|.
T Consensus       172 ~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  172 KDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            6899999999999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		6e-07
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		7e-07
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		3e-04
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		5e-04

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYN-DSFHATSPGEPALLVIKDMISE 69
           + +AYLDQF  DF+ FL+  SEEL   GRM+LT +   D F   +  +   + I D++ E
Sbjct: 192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE 251
Query: 70  GSL 72
           G L
Sbjct: 252 GHL 254

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 7   SEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-SFHATSPGEPALLVIKD 65
           S   V +AYLDQF  DF+ FL+  SEEL   GRM+LT +       A +  +   + I D
Sbjct: 189 SRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARNAIDLLEMAIND 248
Query: 66  MISEGSL 72
           ++ EG L
Sbjct: 249 LVVEGHL 255

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL------VIK 64
           V  AY  QF+ D + FL+ R++E+  GGRM+LT+L   S    S  E  L+       + 
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALN 234
Query: 65  DMISEG 70
            M+SEG
Sbjct: 235 QMVSEG 240

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 14  AYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALL-------VIKDM 66
           AY  QF++D + FL+ R+ E+K GG M L  L   S   T  G   LL          D+
Sbjct: 195 AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDL 254
Query: 67  ISEG 70
           + EG
Sbjct: 255 VREG 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	1e-09
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	2e-09
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	4e-08

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 11  VHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-EPALLVIKDMISE 69
           + +AYLDQF  DF+ FL+  SEEL   GRM+LT +  +         +   + I D++ E
Sbjct: 192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIE 251

Query: 70  GSLS 73
           G L 
Sbjct: 252 GHLE 255

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score = 50.9 bits (121), Expect = 2e-09
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYND-----SFHATSPGEPALLVIK 64
            V  AY  QF+ D + FL+ R++E+  GGRM+LT+L        S       +   + + 
Sbjct: 175 SVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALN 234

Query: 65  DMISEGSLS 73
            M+SEG + 
Sbjct: 235 QMVSEGLIE 243

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score = 47.1 bits (111), Expect = 4e-08
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLL-------YNDSFHATSPGEPALLV 62
               AY  QF++D + FL+ R+ E+K GG M L  L        +        G      
Sbjct: 191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDA 250

Query: 63  IKDMISEGSLSLS 75
             D++ EG ++  
Sbjct: 251 WDDLVREGLVAAE 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.94
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.93
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.91
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	83.51

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.94  E-value=1.2e-27  Score=180.55  Aligned_cols=80  Identities=33%  Similarity=0.457  Sum_probs=74.1

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc-----HHHHHHHHHHHHcCCccc---
Q 034814            3 KEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-----EPALLVIKDMISEGSLSL---   74 (82)
Q Consensus         3 ~~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-----~~l~~al~dmv~eGli~~---   74 (82)
                      .++++|++|.+||++||++||+.||++|++||+|||+||++++||++.++.+++     +.|.+||+|||.||+|++   
T Consensus       168 ~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~  247 (359)
T 1m6e_X          168 MANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKM  247 (359)
T ss_dssp             SCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTT
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhh
Confidence            457889999999999999999999999999999999999999999998876542     899999999999999999   


Q ss_pred             -ccccCCCC
Q 034814           75 -SFNTYQKN   82 (82)
Q Consensus        75 -sFn~P~y~   82 (82)
                       +||+|+|.
T Consensus       248 d~f~~P~y~  256 (359)
T 1m6e_X          248 DKFNIPQYT  256 (359)
T ss_dssp             GGGCCCCBC
T ss_pred             hccCCCccC
Confidence             99999994

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.93  E-value=2e-26  Score=175.13  Aligned_cols=79  Identities=38%  Similarity=0.579  Sum_probs=72.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCC--CCCCCcHHHHHHHHHHHHcCCccc----cc
Q 034814            3 KEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSF--HATSPGEPALLVIKDMISEGSLSL----SF   76 (82)
Q Consensus         3 ~~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~--~~~~~~~~l~~al~dmv~eGli~~----sF   76 (82)
                      +++++|++|.+||++||++||+.||++|++||+|||+||++++||++.  ++.+. +++.++|+|||.||+|++    +|
T Consensus       184 i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~-~~l~~al~~lv~eGli~~ek~dsf  262 (384)
T 2efj_A          184 SSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM-DLLEMSINDLVIEGHLEEEKLDSF  262 (384)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHH-HHHHHHHHHHHHHTSSCHHHHHTC
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccH-HHHHHHHHHHHHhCCcchhhhccc
Confidence            467889999999999999999999999999999999999999999887  65544 599999999999999999    89


Q ss_pred             ccCCCC
Q 034814           77 NTYQKN   82 (82)
Q Consensus        77 n~P~y~   82 (82)
                      |+|+|.
T Consensus       263 ~~P~y~  268 (384)
T 2efj_A          263 NVPIYA  268 (384)
T ss_dssp             CCSBCC
T ss_pred             CCcccC
Confidence            999993

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.91  E-value=5.9e-25  Score=166.26  Aligned_cols=79  Identities=30%  Similarity=0.399  Sum_probs=71.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc-------HHHHHHHHHHHHcCCccc-
Q 034814            3 KEPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-------EPALLVIKDMISEGSLSL-   74 (82)
Q Consensus         3 ~~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-------~~l~~al~dmv~eGli~~-   74 (82)
                      +++++|+ |.+||++||++||..||++|++||+|||+||+++.||++.++.++.       ++|.++|+||+.||+|++ 
T Consensus       185 ~~~~~~~-v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e  263 (374)
T 3b5i_A          185 IHGAGEK-TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAE  263 (374)
T ss_dssp             SSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHH
T ss_pred             eCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchh
Confidence            3567788 9999999999999999999999999999999999999988777632       479999999999999999 


Q ss_pred             ---ccccCCCC
Q 034814           75 ---SFNTYQKN   82 (82)
Q Consensus        75 ---sFn~P~y~   82 (82)
                         +||+|+|.
T Consensus       264 ~~d~f~~P~y~  274 (374)
T 3b5i_A          264 KRDGFNIPVYA  274 (374)
T ss_dssp             HHSSCCCCBCC
T ss_pred             hcccCCccccC
Confidence               89999994

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=83.51  E-value=0.7  Score=32.34  Aligned_cols=49  Identities=20%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             HHHHHhhhhhhhcCceEEEEeeecCCCCCCCCcHHHHHHHHHHHHcCCc
Q 034814           24 SAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGSL   72 (82)
Q Consensus        24 ~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~l~~al~dmv~eGli   72 (82)
                      ..+++.=.+=|+|||++++++-.+..+........+.+....|.+.|+-
T Consensus       162 ~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~  210 (233)
T 4df3_A          162 AIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLE  210 (233)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCE
Confidence            3455544566899999999887665433223336788888999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	1e-09

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 10  DVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDS 49
            V  AY  QF+ D + FL+ R++E+  GGRM+LT+L   S
Sbjct: 175 SVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRS 214

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	99.96
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	84.62
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	84.11

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=99.96  E-value=2.5e-31  Score=199.18  Aligned_cols=79  Identities=33%  Similarity=0.468  Sum_probs=73.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCc-----HHHHHHHHHHHHcCCccc----
Q 034814            4 EPMSEFDVHRAYLDQFKSDFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPG-----EPALLVIKDMISEGSLSL----   74 (82)
Q Consensus         4 ~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-----~~l~~al~dmv~eGli~~----   74 (82)
                      +.++|++|.+||++||++||..||++||+||||||+|||+++||++.++.+..     ++|++||+|||.||+|++    
T Consensus       169 ~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~d  248 (359)
T d1m6ex_         169 ANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMD  248 (359)
T ss_dssp             CSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            35789999999999999999999999999999999999999999998876533     999999999999999999    


Q ss_pred             ccccCCCC
Q 034814           75 SFNTYQKN   82 (82)
Q Consensus        75 sFn~P~y~   82 (82)
                      +||+|+|.
T Consensus       249 sfn~P~Y~  256 (359)
T d1m6ex_         249 KFNIPQYT  256 (359)
T ss_dssp             GGCCCCBC
T ss_pred             hccCcccc
Confidence            99999994

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.31  Score=30.97  Aligned_cols=29  Identities=24%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhhhhhcCceEEEEeeecC
Q 034814           20 KSDFSAFLKFRSEELKCGGRMILTLLYND   48 (82)
Q Consensus        20 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~   48 (82)
                      ..|+..+++.-++=|+|||.+++..+...
T Consensus       169 ~~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         169 LDAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence            36899999999999999999999887654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.11  E-value=0.61  Score=30.54  Aligned_cols=50  Identities=16%  Similarity=0.022  Sum_probs=35.3

Q ss_pred             HHHHHHHhhhhhhhcCceEEEEeeecCCCCCCCCcHHHHHHHHHHHHcCC
Q 034814           22 DFSAFLKFRSEELKCGGRMILTLLYNDSFHATSPGEPALLVIKDMISEGS   71 (82)
Q Consensus        22 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~l~~al~dmv~eGl   71 (82)
                      |...|++.=..-|+|||.++++...+..+........+.+....|.+.|+
T Consensus       156 ~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF  205 (230)
T d1g8sa_         156 QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGF  205 (230)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTE
T ss_pred             HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCC
Confidence            34556666667788999999998887554322222667778888888887