Citrus Sinensis ID: 034823


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--
MAKSVASITTAVALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEEEcccccHHHHHHcccccccccccccccccEEEEEccc
cHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccEcccccccHHHHHHHcccccccccccccccEEEEEccc
MAKSVASITTAVALIFAFFILFasfempvaEAKQCSKRaqkwtgpciktgscrnhcrkregavdgachydfpgfacfcyync
MAKSVASITTAVALIFAFFILFASFEMPVAEAKQCSkraqkwtgpciktgscrnHCRKREGAVDGACHYDFPGFACFCYYNC
MAKSVASITTavalifaffilfaSFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
******SITTAVALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYN*
***********VALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
MAKSVASITTAVALIFAFFILFASFEMPV************WTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
***SVASITTAVALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKSVASITTAVALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query82 2.2.26 [Sep-21-2011]
O2433279 Defensin-like protein 3 O N/A no 0.951 0.987 0.430 3e-13
P8278778 Defensin-like protein 19 yes no 0.951 1.0 0.448 3e-13
Q3931379 Defensin-like protein 3 O N/A no 0.951 0.987 0.392 2e-12
O8099580 Defensin-like protein 14 no no 0.951 0.975 0.440 5e-12
Q9FI2380 Defensin-like protein 16 no no 0.951 0.975 0.4 2e-11
Q9FI2280 Defensin-like protein 17 no no 0.951 0.975 0.428 3e-11
O8099480 Putative defensin-like pr no no 0.951 0.975 0.387 5e-11
P6924180 Defensin-like protein 1 O N/A no 0.951 0.975 0.387 6e-11
O2433180 Defensin-like protein 4 O N/A no 0.951 0.975 0.416 8e-11
B3F05174 Defensin Lc-def OS=Lens c N/A no 0.853 0.945 0.410 3e-10
>sp|O24332|DEF3_RAPSA Defensin-like protein 3 OS=Raphanus sativus GN=AFP3 PE=3 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 5  VASITTAVALIFAFFILFASFEMP-VAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAV 63
          +A   + VAL+FA  ++FA+FE P V EAK C + +  W+G C    +C+N C + EGA 
Sbjct: 1  MAKFASIVALLFAALVVFAAFEAPTVVEAKLCERSSGTWSGVCGNNNACKNQCIRLEGAQ 60

Query: 64 DGACHYDFPGFACFCYYNC 82
           G+C+Y FP   C CY+ C
Sbjct: 61 HGSCNYVFPAHKCICYFPC 79




Possesses antifungal activity sensitive to inorganic cations.
Raphanus sativus (taxid: 3726)
>sp|P82787|DEF19_ARATH Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=3 SV=2 Back     alignment and function description
>sp|Q39313|DEF3_BRANA Defensin-like protein 3 OS=Brassica napus GN=AFP3 PE=3 SV=1 Back     alignment and function description
>sp|O80995|DEF14_ARATH Defensin-like protein 14 OS=Arabidopsis thaliana GN=PDF1.3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FI23|DEF16_ARATH Defensin-like protein 16 OS=Arabidopsis thaliana GN=PDF1.2A PE=2 SV=1 Back     alignment and function description
>sp|Q9FI22|DEF17_ARATH Defensin-like protein 17 OS=Arabidopsis thaliana GN=PDF1.2C PE=2 SV=1 Back     alignment and function description
>sp|O80994|DEF15_ARATH Putative defensin-like protein 15 OS=Arabidopsis thaliana GN=PDF1.2B PE=3 SV=1 Back     alignment and function description
>sp|P69241|DEF1_RAPSA Defensin-like protein 1 OS=Raphanus sativus GN=AFP1 PE=1 SV=1 Back     alignment and function description
>sp|O24331|DEF4_RAPSA Defensin-like protein 4 OS=Raphanus sativus GN=AFP4 PE=3 SV=1 Back     alignment and function description
>sp|B3F051|DEF_LENCC Defensin Lc-def OS=Lens culinaris subsp. culinaris PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
29785034878 low-molecular-weight cysteine-rich 78 [A 0.926 0.974 0.467 1e-11
1138662879 RecName: Full=Defensin-like protein 3; A 0.951 0.987 0.430 1e-11
22545821382 PREDICTED: defensin-like protein 19 [Vit 1.0 1.0 0.414 1e-11
2232967578 defensin-like protein 19 [Arabidopsis th 0.951 1.0 0.448 1e-11
29780520078 hypothetical protein ARALYDRAFT_915784 [ 0.951 1.0 0.397 4e-11
1138664079 RecName: Full=Defensin-like protein 3; A 0.951 0.987 0.392 9e-11
6302968380 putative plant defensin PDF1.2 [Arabidop 0.951 0.975 0.412 1e-10
31069740479 defensin 1.2 [Brassica rapa subsp. campe 0.951 0.987 0.392 1e-10
29783946580 hypothetical protein ARALYDRAFT_895457 [ 0.951 0.975 0.412 2e-10
1522523880 defensin-like protein 14 [Arabidopsis th 0.951 0.975 0.440 2e-10
>gi|297850348|ref|XP_002893055.1| low-molecular-weight cysteine-rich 78 [Arabidopsis lyrata subsp. lyrata] gi|297338897|gb|EFH69314.1| low-molecular-weight cysteine-rich 78 [Arabidopsis lyrata subsp. lyrata] gi|410066987|emb|CCN97876.1| defensin [Arabidopsis halleri subsp. halleri] Back     alignment and taxonomy information
 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 6  ASITTAVALIFAFFILFASFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDG 65
          +S T  + L  + F++ AS EM   EA+ C +R++ WTG C  T  C + C+  E A  G
Sbjct: 3  SSYTLMLFLCLSIFLI-ASTEMMAVEARICERRSKTWTGFCGNTRGCDSQCKSWERASHG 61

Query: 66 ACHYDFPGFACFCYYNC 82
          ACH  FPGFACFCY+NC
Sbjct: 62 ACHAQFPGFACFCYFNC 78




Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11386628|sp|O24332.1|DEF3_RAPSA RecName: Full=Defensin-like protein 3; AltName: Full=Cysteine-rich antifungal protein 3; Short=AFP3; Flags: Precursor gi|1655685|emb|CAA65984.1| antifungal protein 3 [Raphanus sativus] Back     alignment and taxonomy information
>gi|225458213|ref|XP_002281189.1| PREDICTED: defensin-like protein 19 [Vitis vinifera] gi|147772111|emb|CAN64556.1| hypothetical protein VITISV_040160 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22329675|ref|NP_173391.2| defensin-like protein 19 [Arabidopsis thaliana] gi|57015384|sp|P82787.2|DEF19_ARATH RecName: Full=Defensin-like protein 19; AltName: Full=Defensin AMP1 protein; AltName: Full=Low-molecular-weight cysteine-rich protein 78; Short=Protein LCR78; AltName: Full=Plant defensin 1.4; Flags: Precursor gi|17380954|gb|AAL36289.1| putative defensin AMP1 protein [Arabidopsis thaliana] gi|21281052|gb|AAM45086.1| putative defensin AMP1 protein [Arabidopsis thaliana] gi|332191752|gb|AEE29873.1| defensin-like protein 19 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297805200|ref|XP_002870484.1| hypothetical protein ARALYDRAFT_915784 [Arabidopsis lyrata subsp. lyrata] gi|297316320|gb|EFH46743.1| hypothetical protein ARALYDRAFT_915784 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11386640|sp|Q39313.1|DEF3_BRANA RecName: Full=Defensin-like protein 3; AltName: Full=Cysteine-rich antifungal protein 3; Short=AFP3; Flags: Precursor gi|1399230|gb|AAB03224.1| antifungal protein [Brassica napus] gi|60686419|gb|AAX35338.1| defensin 1.2 [Brassica napus] gi|151382079|gb|ABS11037.1| defensin [Brassica oleracea var. gemmifera] gi|218436744|dbj|BAH03381.1| plant defensin [Brassica rapa subsp. chinensis] gi|244539519|dbj|BAH82667.1| defensin 1.2 [Brassica rapa subsp. chinensis] Back     alignment and taxonomy information
>gi|63029683|gb|AAY27737.1| putative plant defensin PDF1.2 [Arabidopsis halleri] Back     alignment and taxonomy information
>gi|310697404|gb|ADP06657.1| defensin 1.2 [Brassica rapa subsp. campestris] Back     alignment and taxonomy information
>gi|297839465|ref|XP_002887614.1| hypothetical protein ARALYDRAFT_895457 [Arabidopsis lyrata subsp. lyrata] gi|297333455|gb|EFH63873.1| hypothetical protein ARALYDRAFT_895457 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15225238|ref|NP_180171.1| defensin-like protein 14 [Arabidopsis thaliana] gi|11386634|sp|O80995.1|DEF14_ARATH RecName: Full=Defensin-like protein 14; AltName: Full=Cysteine-rich antifungal protein At2g26010; AltName: Full=Plant defensin 1.3; Flags: Precursor gi|3413711|gb|AAC31234.1| putative antifungal protein [Arabidopsis thaliana] gi|330252689|gb|AEC07783.1| defensin-like protein 14 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query82
TAIR|locus:201318478 PDF1.4 "AT1G19610" [Arabidopsi 0.719 0.756 0.508 3.8e-14
TAIR|locus:205744880 PDF1.3 "AT2G26010" [Arabidopsi 0.951 0.975 0.392 2.8e-11
TAIR|locus:216343180 PDF1.2c "AT5G44430" [Arabidops 0.951 0.975 0.380 3.2e-10
TAIR|locus:205743780 PDF1.2b "AT2G26020" [Arabidops 0.719 0.737 0.426 4.1e-10
UNIPROTKB|P8697350 P86973 "Defensin D2" [Nigella 0.609 1.0 0.42 1.1e-09
TAIR|locus:216342180 PDF1.2 "AT5G44420" [Arabidopsi 0.719 0.737 0.409 1.4e-09
UNIPROTKB|P8697250 P86972 "Defensin D1" [Nigella 0.609 1.0 0.42 2.9e-09
TAIR|locus:201105580 PDF1.5 "AT1G55010" [Arabidopsi 0.707 0.725 0.333 4.7e-09
TAIR|locus:220436580 LCR67 "AT1G75830" [Arabidopsis 0.951 0.975 0.369 4.7e-09
UNIPROTKB|A4L7R783 Def1 "Defensin-1" [Pinus sylve 0.682 0.674 0.350 4.8e-07
TAIR|locus:2013184 PDF1.4 "AT1G19610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 30/59 (50%), Positives = 38/59 (64%)

Query:    24 SFEMPVAEAKQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82
             S EM   E + C +R++ WTG C  T  C + C++ E A  GACH  FPGFACFCY+NC
Sbjct:    20 STEMMAVEGRICERRSKTWTGFCGNTRGCDSQCKRWERASHGACHAQFPGFACFCYFNC 78




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
TAIR|locus:2057448 PDF1.3 "AT2G26010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163431 PDF1.2c "AT5G44430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057437 PDF1.2b "AT2G26020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P86973 P86973 "Defensin D2" [Nigella sativa (taxid:555479)] Back     alignment and assigned GO terms
TAIR|locus:2163421 PDF1.2 "AT5G44420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P86972 P86972 "Defensin D1" [Nigella sativa (taxid:555479)] Back     alignment and assigned GO terms
TAIR|locus:2011055 PDF1.5 "AT1G55010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204365 LCR67 "AT1G75830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4L7R7 Def1 "Defensin-1" [Pinus sylvestris (taxid:3349)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P82787DEF19_ARATHNo assigned EC number0.44870.95121.0yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query82
pfam0030447 pfam00304, Gamma-thionin, Gamma-thionin family 2e-07
>gnl|CDD|109365 pfam00304, Gamma-thionin, Gamma-thionin family Back     alignment and domain information
 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 35 CSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82
          C   +  + GPC    +C   CR  EG   G C        CFC   C
Sbjct: 3  CESPSGTFKGPCFSDSNCAKVCRN-EGFAGGHCSG--FRRRCFCTKPC 47


Length = 47

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 82
PF0030447 Gamma-thionin: Gamma-thionin family; InterPro: IPR 99.69
smart0050545 Knot1 Knottins. Knottins, representing plant lecti 99.04
cd0010733 Knot1 The "knottin" fold is stable cysteine-rich s 98.68
PF1086890 DUF2667: Protein of unknown function (DUF2667); In 98.16
PF0109734 Defensin_2: Arthropod defensin; InterPro: IPR00154 96.8
PF0053754 Toxin_3: Scorpion toxin-like domain ; InterPro: IP 96.31
PF0733358 SLR1-BP: S locus-related glycoprotein 1 binding po 96.21
PF0712754 Nodulin_late: Late nodulin protein; InterPro: IPR0 95.5
PF0045132 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IP 94.48
PF1486656 Toxin_38: Potassium channel toxin 89.82
PF0811937 Toxin_31: Scorpion acidic alpha-KTx toxin family; 89.0
PF1486559 Macin: Macin; PDB: 2K35_A 2LN8_A. 88.87
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 88.12
PF0808641 Toxin_17: Ergtoxin family; InterPro: IPR012622 The 83.5
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems [] Back     alignment and domain information
Probab=99.69  E-value=3.4e-18  Score=96.18  Aligned_cols=47  Identities=32%  Similarity=0.784  Sum_probs=41.6

Q ss_pred             ccccccCccceecCCCccccHHHhccccCCCCceeecCCCCcceEeecCC
Q 034823           33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC   82 (82)
Q Consensus        33 ~~C~~~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~~~C   82 (82)
                      ++|+++|++|+|+|++|++|+++|++ |||.+|+|+++  .++|+|++||
T Consensus         1 k~C~~~S~tf~G~C~~~~~C~~~C~~-eg~~~G~C~~~--~~~C~C~~~C   47 (47)
T PF00304_consen    1 KTCERPSGTFKGLCFSDSNCANVCIN-EGFTGGKCSGP--LRRCFCTKPC   47 (47)
T ss_dssp             EEEEEESSSS-SS-SSHHHHHHHHHH-CTSSEEEEETT--TTEEEEEEEE
T ss_pred             CcccccCCCceeECCCcchhhHHhcc-CCCCCCEeCCC--CceEEEeCcC
Confidence            57999999999999999999999997 99999999964  5899999997



A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....

>smart00505 Knot1 Knottins Back     alignment and domain information
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments Back     alignment and domain information
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana Back     alignment and domain information
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ] Back     alignment and domain information
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission Back     alignment and domain information
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins Back     alignment and domain information
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein Back     alignment and domain information
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans Back     alignment and domain information
>PF14866 Toxin_38: Potassium channel toxin Back     alignment and domain information
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins Back     alignment and domain information
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query82
1ayj_A51 Determination Of The Three-Dimensional Solution Str 2e-05
1bk8_A50 Determination Of The Three-Dimensional Solution Str 1e-04
2gl1_A47 Nmr Solution Structure Of Vigna Radiata Defensin 2 2e-04
3psm_A47 .98a Crystal Structure Of A Dimeric Plant Defensin 3e-04
2lj7_A47 3d Solution Structure Of Plant Defensin Lc-Def Leng 3e-04
>pdb|1AYJ|A Chain A, Determination Of The Three-Dimensional Solution Structure Of Raphanus Sativus Antifungal Protein 1 (Rs-Afp1) By 1h Nmr, 20 Structures Length = 51 Back     alignment and structure

Iteration: 1

Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82 K C + + W+G C +C+N C E A G+C+Y FP C CY+ C Sbjct: 2 KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC 51
>pdb|1BK8|A Chain A, Determination Of The Three-Dimensional Solution Structure Of Aesculus Hippocastanum Antimicrobial Protein 1 (Ah- Amp1) By 1h Nmr, 25 Structures Length = 50 Back     alignment and structure
>pdb|2GL1|A Chain A, Nmr Solution Structure Of Vigna Radiata Defensin 2 (Vrd2) Length = 47 Back     alignment and structure
>pdb|3PSM|A Chain A, .98a Crystal Structure Of A Dimeric Plant Defensin Spe10 Length = 47 Back     alignment and structure
>pdb|2LJ7|A Chain A, 3d Solution Structure Of Plant Defensin Lc-Def Length = 47 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query82
1ayj_A51 RS-AFP1, antifungal protein 1; fungicide, plant de 4e-13
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 4e-13
1bk8_A50 AH-AMP1, antimicrobial protein 1; plant defensin, 4e-12
3psm_A47 Defensin, SPE10; dimer, antimicrobial protein; 0.9 9e-07
1jkz_A46 PSD1, defense-related peptide 1; plant defensin, C 1e-05
>1ayj_A RS-AFP1, antifungal protein 1; fungicide, plant defensin, cysteine-stabilized ALFA/beta motif; HET: PCA; NMR {Raphanus sativus var} SCOP: g.3.7.5 Length = 51 Back     alignment and structure
 Score = 57.0 bits (137), Expect = 4e-13
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82
          K C + +  W+G C    +C+N C   E A  G+C+Y FP   C CY+ C
Sbjct: 2  KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC 51


>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108 Back     alignment and structure
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin, cysteine-stabilized ALFA/ beta motif; NMR {Aesculus hippocastanum} SCOP: g.3.7.5 Length = 50 Back     alignment and structure
>3psm_A Defensin, SPE10; dimer, antimicrobial protein; 0.98A {Pachyrhizus erosus} PDB: 2gl1_A Length = 47 Back     alignment and structure
>1jkz_A PSD1, defense-related peptide 1; plant defensin, Cys-rich, antifungal, antifungal protein; NMR {Pisum sativum} SCOP: g.3.7.5 Length = 46 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query82
2ksk_A71 Sugarcane defensin 5; csalphabeta motif, antimicro 99.83
1ayj_A51 RS-AFP1, antifungal protein 1; fungicide, plant de 99.81
2lr3_A47 Defensin; fungal disease, antifungal agent, antifu 99.78
1n4n_A47 PHD1, floral defensin-like protein 1; cysteine-sta 99.76
1mr4_A47 Nicotiana alata plant defensin 1 (NAD1); cysteine- 99.76
1gps_A47 Gamma-1-P thionin; plant toxin; NMR {Triticum turg 99.76
3psm_A47 Defensin, SPE10; dimer, antimicrobial protein; 0.9 99.76
1bk8_A50 AH-AMP1, antimicrobial protein 1; plant defensin, 99.76
2kpy_A108 Major pollen allergen ART V 1; defensin-like, poly 99.74
1jkz_A46 PSD1, defense-related peptide 1; plant defensin, C 99.74
1ti5_A46 Plant defensin; insecticidal activity, MUNG bean, 99.73
1myn_A44 Drosomycin; insect immunity, antifungal, csalpha-b 99.16
1i2u_A44 Defensin heliomicin; alpha-beta protein, CSAB moti 98.32
1zfu_A40 Plectasin; defensin,antimicrobial peptide,cysteine 96.75
2lr5_A38 Micasin; antimicrobial protein; NMR {Arthroderma o 95.68
1fjn_A39 Defensin MGD-1; cystine stabilized alpha-beta moti 96.64
1wmt_A41 ISTX; neurotoxin, potassium channel blocker, solut 96.53
1brz_A54 Brazzein; sweet protein, cysteine-stabilized alpha 96.53
1c49_A35 Toxin K-beta; scorpion toxin, potassium channels b 96.5
1ica_A40 Insect defensin A; antibacterial protein; NMR {Pro 96.39
1quz_A35 HSTX1 toxin; scorpion toxin, alpha beta, molecular 96.37
2k9o_A36 VM24 scorpion toxin; ALFA/beta scaffold, beta shee 96.29
2e3g_A40 Defensin, mutant DEF-DAA; insect defensin, CSAB mo 96.28
1qky_A38 PI7, toxin 7 from pandinus imperator; neurotoxin; 96.24
1n8m_A38 PI4, potassium channel blocking toxin 4; potassium 96.14
1wt7_A41 BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, 96.07
2b68_A43 Defensin; antibacterial peptide, cysteine-rich pep 96.07
1jxc_A68 Putative trypsin inhibitor ATTI-2; chymotrypsin in 96.06
2e3e_A45 Defensin, mutant DEF-BBB; insect defensin, CSAB mo 96.03
1t1t_A63 Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR 95.97
1aho_A64 Toxin II; scorpion, AB initio phasing, neurotoxin; 95.87
1nra_A63 Neurotoxin V, CSE-V; NMR {Centruroides sculpturatu 95.8
1snb_A64 Neurotoxin BMK M8; sodium channel inhibitor, scorp 95.79
1kv0_A66 BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl 95.77
1wz5_A35 Potassium channel blocking toxin 1; ionic channel 95.73
1i6f_A60 Neurotoxin V-5, CSE-V5; scorpion, sodium channel, 95.69
2yeo_A65 Alpha-insect toxin lqhait; defense response; HET: 95.66
1dq7_A64 Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7 95.56
2i61_A62 Insect toxin 2; scorpion toxin, depressant, anti-i 95.49
1j5j_A36 BEKM-1 toxin; alpha-beta motif, cysteine-knot moti 95.33
1bmr_A68 LQH III alpha-like toxin; scorpion toxin, sodium c 95.3
1cmr_A31 Charybdotoxin, alpha chimera; antagonist of nicoti 95.25
1hly_A39 Hongotoxin 1; scorpion, centruroides limbatus HGTX 95.17
1hp2_A37 Tityustoxin K alpha; K+ channel, scorpion toxin, a 95.12
2axk_A38 Discrepin; scorpion toxin, A-current, K+-channel,; 95.11
2ln4_A44 Coprisin; antimicrobial protein, defensin-like pep 95.04
1big_A37 Toxin BMTX1; scorpion, neurotoxin, structure, larg 95.03
1bah_A37 Charybdotoxin, chabii; neurotoxin, potassium chann 95.02
1c55_A40 Butantoxin; structure; NMR {Tityus serrulatus} SCO 94.96
1t0z_A72 Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus m 94.94
1m2s_A37 Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; 94.74
1pe4_A67 Neurotoxin CN11, CN12; scorpion toxin, sodium chan 94.64
1npi_A61 Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A { 94.57
1agt_A38 Agitoxin 2; potassium channel blocker, neurotoxin; 94.55
1b3c_A64 Protein (neurotoxin CSE-I); scorpion neurotoxin, N 94.49
2koz_A33 Nasonin-1; alpha/beta structure, disulfide bonds, 94.49
2sn3_A65 Scorpion neurotoxin (variant 3); 1.20A {Centruroid 94.46
2ljm_A82 CSS II, cssii, beta-mammal toxin CSS2; CS ALFA bet 94.16
2yc1_C66 Beta-mammal toxin CN2; immune system-toxin complex 94.08
1tsk_A35 TS KAPA; scorpion, toxin, potassium channel, neuro 93.69
1bcg_A77 Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hott 93.21
2ddl_A33 Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Sy 92.92
1r1g_A31 Neurotoxin BMK37, BMBKTTX1; siras from S atoms, sc 92.18
1pjv_A32 Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroi 91.81
2lt8_A42 Eurocin; A/B-fold, cysteine stabilised, antimicrob 88.34
2k35_A60 Hydramacin-1; antimicrobial protein; NMR {Hydra} 86.37
1ne5_A42 Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stran 85.23
>2ksk_A Sugarcane defensin 5; csalphabeta motif, antimicrobial protein; NMR {Saccharum officinarum} Back     alignment and structure
Probab=99.83  E-value=8e-22  Score=118.88  Aligned_cols=54  Identities=30%  Similarity=0.681  Sum_probs=50.0

Q ss_pred             hhhcccccccCccceecCCCccccHHHhccc-cCCCCceeecCCCCcceEeecCC
Q 034823           29 VAEAKQCSKRAQKWTGPCIKTGSCRNHCRKR-EGAVDGACHYDFPGFACFCYYNC   82 (82)
Q Consensus        29 ~~ea~~C~~~S~~~~G~C~~~~~C~~~C~~~-Eg~~~G~C~~~~~~~~C~C~~~C   82 (82)
                      ++||++|+++|++|+|+|++|++|+++|+++ |||.+|+|++++|.++|+|+++|
T Consensus         3 ~aEAr~C~s~S~~fkG~C~~~~nC~~vC~~~~Egf~~G~C~g~~~~rrC~Ctk~C   57 (71)
T 2ksk_A            3 PTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC   57 (71)
T ss_dssp             CCSSCCEEEECSSSCSSCCCHHHHHHHHHHHCSSCCEEEEECCSSSCEEEEEECC
T ss_pred             cccchhhhccCCCCeEEcCCCccHHHhccCcCCCCCCCCcCCCCCCceEEEECCc
Confidence            4899999999999999999999999999965 99999999976567899999998



>1ayj_A RS-AFP1, antifungal protein 1; fungicide, plant defensin, cysteine-stabilized ALFA/beta motif; HET: PCA; NMR {Raphanus sativus var} SCOP: g.3.7.5 Back     alignment and structure
>2lr3_A Defensin; fungal disease, antifungal agent, antifungal protein; NMR {Medicago truncatula} Back     alignment and structure
>1n4n_A PHD1, floral defensin-like protein 1; cysteine-stabilised alpha-beta motif, fifth disulfide bond, plant protein; NMR {Petunia x hybrida} SCOP: g.3.7.5 Back     alignment and structure
>1mr4_A Nicotiana alata plant defensin 1 (NAD1); cysteine-stabilized alpha-beta motif, plant defensin fold, plant protein; NMR {Nicotiana tabacum} SCOP: g.3.7.5 PDB: 4aaz_A 4ab0_A Back     alignment and structure
>1gps_A Gamma-1-P thionin; plant toxin; NMR {Triticum turgidum} SCOP: g.3.7.5 PDB: 1gpt_A Back     alignment and structure
>3psm_A Defensin, SPE10; dimer, antimicrobial protein; 0.98A {Pachyrhizus erosus} SCOP: g.3.7.5 PDB: 2gl1_A 2lj7_A Back     alignment and structure
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin, cysteine-stabilized ALFA/ beta motif; NMR {Aesculus hippocastanum} SCOP: g.3.7.5 Back     alignment and structure
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Back     alignment and structure
>1jkz_A PSD1, defense-related peptide 1; plant defensin, Cys-rich, antifungal, antifungal protein; NMR {Pisum sativum} SCOP: g.3.7.5 Back     alignment and structure
>1ti5_A Plant defensin; insecticidal activity, MUNG bean, plant protein; NMR {Vigna radiata} Back     alignment and structure
>1myn_A Drosomycin; insect immunity, antifungal, csalpha-beta motif, signal protein; NMR {Drosophila melanogaster} SCOP: g.3.7.4 Back     alignment and structure
>1i2u_A Defensin heliomicin; alpha-beta protein, CSAB motif (cysteine stabilized alpha- helix beta-sheet motif), antifungal protein; NMR {Heliothis virescens} SCOP: g.3.7.4 PDB: 1ozz_A 1i2v_A 1p0a_A 1p00_A Back     alignment and structure
>1zfu_A Plectasin; defensin,antimicrobial peptide,cysteine stabilized alpha- beta motif, antimicrobial protein; NMR {Pseudoplectania nigrella} PDB: 3e7r_L 3e7u_X Back     alignment and structure
>2lr5_A Micasin; antimicrobial protein; NMR {Arthroderma otae} Back     alignment and structure
>1fjn_A Defensin MGD-1; cystine stabilized alpha-beta motif, antibacterial, disulfide bond, synthesis, antimicrobial protein; NMR {Synthetic} SCOP: g.3.7.3 Back     alignment and structure
>1wmt_A ISTX; neurotoxin, potassium channel blocker, solution structure, alpha-K toxin family, scorpion toxin; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A Back     alignment and structure
>1c49_A Toxin K-beta; scorpion toxin, potassium channels blockers, alpha-K toxin family, neurotoxin, solution structure; NMR {Pandinus imperator} SCOP: g.3.7.2 PDB: 2pta_A Back     alignment and structure
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X Back     alignment and structure
>1quz_A HSTX1 toxin; scorpion toxin, alpha beta, molecular modeling, potassium channel; NMR {Synthetic} SCOP: k.23.1.1 PDB: 1y2p_A 1wpd_A Back     alignment and structure
>2k9o_A VM24 scorpion toxin; ALFA/beta scaffold, beta sheet, ALFA helix, scorpion K+ toxin; NMR {Synthetic} Back     alignment and structure
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2nz3_A Back     alignment and structure
>1qky_A PI7, toxin 7 from pandinus imperator; neurotoxin; NMR {Pandinus imperator} SCOP: g.3.7.2 Back     alignment and structure
>1n8m_A PI4, potassium channel blocking toxin 4; potassium channel blocker, disulfide bridge stabilized alpha beta motif; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1v56_A 1txm_A Back     alignment and structure
>1wt7_A BUTX-MTX; maurotoxin, butantoxin, scorpion toxin, K+ channels, molecular contacts, toxin affinity; NMR {Synthetic} SCOP: g.3.7.2 PDB: 2z3s_A Back     alignment and structure
>2b68_A Defensin; antibacterial peptide, cysteine-rich peptide, antimicrobial protein; NMR {Crassostrea gigas} Back     alignment and structure
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5 Back     alignment and structure
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif, antibacterial, antimicrobial protein; NMR {Anopheles gambiae} PDB: 2e3f_A 2ny9_X Back     alignment and structure
>1t1t_A Kurtoxin, KTX; cysteine stabilized alpha-beta; NMR {Parabuthus transvaalicus} Back     alignment and structure
>1aho_A Toxin II; scorpion, AB initio phasing, neurotoxin; 0.96A {Androctonus australis} SCOP: g.3.7.1 PDB: 1ptx_A 4aei_A* 1seg_A 2kbh_A 2kbj_A Back     alignment and structure
>1nra_A Neurotoxin V, CSE-V; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1nrb_A Back     alignment and structure
>1snb_A Neurotoxin BMK M8; sodium channel inhibitor, scorpion; 1.90A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>1kv0_A BMK M7, BMKM7, alpha-like toxin BMK-M7; non-prolyl CIS peptide bond, CIS/trans isomerization, dimeric structure, scorpion toxin; 1.40A {Mesobuthus martensii} SCOP: g.3.7.1 Back     alignment and structure
>1wz5_A Potassium channel blocking toxin 1; ionic channel inhibitor; HET: ABA; NMR {Pandinus imperator} Back     alignment and structure
>1i6f_A Neurotoxin V-5, CSE-V5; scorpion, sodium channel, alpha helix, beta sheet, disulfide linkages; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 1i6g_A 1nh5_A Back     alignment and structure
>2yeo_A Alpha-insect toxin lqhait; defense response; HET: DR8 DR0 EDO; 1.08A {Leiurus quinquestriatus hebraeus} PDB: 1lqh_A 1lqi_A 2asc_A* 2atb_A 1lqq_A 1t7e_A 1djt_A 1sn1_A 1zvg_A 1t7b_A 1zut_A 1t7a_A 1zu3_A 1chz_A 1zve_A 1zyv_A 1zyw_A 1omy_A 2e0h_A 2kbk_A ... Back     alignment and structure
>1dq7_A Neurotoxin; 2.20A {Mesobuthus tamulus} SCOP: g.3.7.1 PDB: 2a7t_A Back     alignment and structure
>2i61_A Insect toxin 2; scorpion toxin, depressant, anti-insect, sodium channel modifer; 1.20A {Leiurus quinquestriatus hebraeus} Back     alignment and structure
>1j5j_A BEKM-1 toxin; alpha-beta motif, cysteine-knot motif; NMR {Mesobuthus eupeus} SCOP: g.3.7.2 PDB: 1lgl_A Back     alignment and structure
>1bmr_A LQH III alpha-like toxin; scorpion toxin, sodium channel inhibitor; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.1 PDB: 1fh3_A Back     alignment and structure
>1cmr_A Charybdotoxin, alpha chimera; antagonist of nicotinic acetylcholine receptor, curaremimetic protein; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>1hly_A Hongotoxin 1; scorpion, centruroides limbatus HGTX1, potassium channel; NMR {Centruroides limbatus} SCOP: g.3.7.2 PDB: 1mtx_A 1sxm_A Back     alignment and structure
>1hp2_A Tityustoxin K alpha; K+ channel, scorpion toxin, alpha-K toxin,; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>2axk_A Discrepin; scorpion toxin, A-current, K+-channel,; HET: PCA; NMR {Synthetic} Back     alignment and structure
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus} Back     alignment and structure
>1big_A Toxin BMTX1; scorpion, neurotoxin, structure, large conductance potassium channel, voltage gated potassium channel; HET: PCA; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 2bmt_A* Back     alignment and structure
>1bah_A Charybdotoxin, chabii; neurotoxin, potassium channel inhibitor; HET: PCA ABA; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 2a9h_E* 2crd_A* 1lir_A* Back     alignment and structure
>1c55_A Butantoxin; structure; NMR {Tityus serrulatus} SCOP: g.3.7.2 PDB: 1c56_A Back     alignment and structure
>1t0z_A Insect neurotoxin; alpha-beta; 2.60A {Mesobuthus martensii} SCOP: g.3.7.1 PDB: 1wwn_A Back     alignment and structure
>1m2s_A Toxin BMTX3, neurotoxin TX3; alpha/beta scaffold; NMR {Mesobuthus martensii} SCOP: g.3.7.2 Back     alignment and structure
>1pe4_A Neurotoxin CN11, CN12; scorpion toxin, sodium channels alpha toxin; NMR {Centruroides noxius} SCOP: g.3.7.1 Back     alignment and structure
>1npi_A Toxin VII, TSTX-VII; xcitatory neurotoxin; 1.16A {Tityus serrulatus} SCOP: g.3.7.1 PDB: 1b7d_A Back     alignment and structure
>1agt_A Agitoxin 2; potassium channel blocker, neurotoxin; NMR {Leiurus quinquestriatus hebraeus} SCOP: g.3.7.2 PDB: 1xsw_A 2ktx_A 2uvs_A 3odv_A* 1ktx_A 2ck4_A 1sco_A 2k4u_A 1bkt_A 2ck5_A 2kir_A Back     alignment and structure
>1b3c_A Protein (neurotoxin CSE-I); scorpion neurotoxin, NEW world toxin; NMR {Centruroides sculpturatus} SCOP: g.3.7.1 PDB: 2b3c_A Back     alignment and structure
>2koz_A Nasonin-1; alpha/beta structure, disulfide bonds, de novo protein; NMR {Synthetic construct} PDB: 2kp0_A Back     alignment and structure
>2sn3_A Scorpion neurotoxin (variant 3); 1.20A {Centruroides exilicauda} SCOP: g.3.7.1 PDB: 1jza_A 1jzb_A 1vna_A 1vnb_A 2kja_A Back     alignment and structure
>2ljm_A CSS II, cssii, beta-mammal toxin CSS2; CS ALFA beta; NMR {Centruroides suffusus suffusus} Back     alignment and structure
>2yc1_C Beta-mammal toxin CN2; immune system-toxin complex, scorpion toxin; 1.90A {Centruroides noxius hoffmann} PDB: 2ybr_C 1cn2_A 2li7_A Back     alignment and structure
>1tsk_A TS KAPA; scorpion, toxin, potassium channel, neurotoxin; NMR {Tityus serrulatus} SCOP: g.3.7.2 Back     alignment and structure
>1bcg_A Toxin BJXTR-IT; excitatory neurotoxin; 2.10A {Hottentotta judaicus} SCOP: g.3.7.1 Back     alignment and structure
>2ddl_A Leiurotoxin, LEI4P; scorpion toxin analog; NMR {Synthetic} Back     alignment and structure
>1r1g_A Neurotoxin BMK37, BMBKTTX1; siras from S atoms, scorpion toxin, reductive dimethylation; HET: MLY; 1.72A {Synthetic} SCOP: g.3.7.2 PDB: 1q2k_A 3e8y_X Back     alignment and structure
>1pjv_A Cobatoxin 1, COTX1, GTIX; scorpion toxin, centuroides noxius, K+ channel, chemical synthesis, 3-D structure, 1H-spectroscopy, circular dichroism; NMR {Synthetic} SCOP: g.3.7.2 Back     alignment and structure
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami} Back     alignment and structure
>2k35_A Hydramacin-1; antimicrobial protein; NMR {Hydra} Back     alignment and structure
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 82
d1ayja_51 g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radis 6e-14
d1bk8a_50 g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Ho 3e-12
d1jkza_46 g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum 1e-06
d1gpsa_47 g.3.7.5 (A:) gamma-Thionin {English wheat (Triticu 0.001
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]} Length = 51 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: Antifungal protein 1 (RS-AFP1)
species: Radish (Raphanus sativus) [TaxId: 3726]
 Score = 58.0 bits (140), Expect = 6e-14
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC 82
          K C + +  W+G C    +C+N C   E A  G+C+Y FP   C CY+ C
Sbjct: 2  KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC 51


>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]} Length = 50 Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Length = 46 Back     information, alignment and structure
>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query82
d1gpsa_47 gamma-Thionin {English wheat (Triticum turgidum) [ 99.79
d1mr4a_47 Floral defensin 1 {Common tobacco (Nicotiana tabac 99.79
d1n4na_47 Floral defensin 1 {Garden petunia (Petunia x hybri 99.77
d1ayja_51 Antifungal protein 1 (RS-AFP1) {Radish (Raphanus s 99.7
d1bk8a_50 Antimicrobial protein 1 (AH-AMP1) {Horse chestnut 99.63
d1jkza_46 Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 388 99.46
d1myna_44 Drosomycin {Fruit fly (Drosophila melanogaster) [T 98.51
d1jxca_68 Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cres 97.02
d1kv0a_66 Tx10 alpha-like toxin {Chinese scorpion (Buthus ma 96.75
d1fjna_39 Defensin MGD-1 {Mediterranean mussel (Mytilus gall 96.61
d2asca165 alpha toxin {Scorpion (Leiurus quinquestriatus heb 96.53
d1ahoa_64 Scorpion toxin {Scorpion (Androctonus australis he 96.18
d1snba_64 Scorpion toxin {Scorpion (Buthus martensii), toxin 96.18
d1dq7a_64 Scorpion toxin {Indian red scorpion (Buthus tamulu 96.17
d1bmra_67 LQH III alpha-like toxin, LQH {Hebraei scorpion (L 96.02
d1nraa_63 Scorpion toxin {Centruroides sculpturatus, variant 95.95
d1nh5a_60 Scorpion toxin {Bark scorpion (Centruroides sculpt 95.6
d1r1ga_31 Neurotoxin bmk37 {Chinese scorpion (Buthus martens 95.24
d1ozza_44 Defensin ARD1 {Archaeoprepona demophon [TaxId: 191 95.19
d1icaa_40 Defensin A {Flesh fly (Phormia terranovae) [TaxId: 94.82
d1npia_61 Scorpion toxin {Brazilian scorpion (Tityus serrula 94.66
d1tska_35 Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxI 93.95
d1pjva_32 Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId 93.91
d2sn3a_65 Scorpion toxin {Centruroides sculpturatus, variant 93.47
d1t0za_72 Scorpion toxin {Scorpion (Buthus martensii), BmK I 92.96
d1bcga_74 Scorpion toxin {Scorpion (Buthotus judaicus), BJXT 92.62
d1cn2a_66 Scorpion toxin {Mexican scorpion (Centruroides nox 92.56
d1m2sa_37 Bmtx3 {Buthus martensii karsch [TaxId: 34649]} 91.76
d1wmta_41 Istx {Scorpion (Opisthacanthus madagascariensis) [ 91.68
d2b3ca_64 Scorpion toxin {Centruroides sculpturatus, beta [T 91.33
d1biga_37 Bmtx1 {Buthus martensii [TaxId: 34649]} 90.95
d1j5ja_36 Bekm-1 {Lesser asian scorpion (Buthus eupeus) [Tax 90.78
d2crda_37 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 90.78
d1cmra_31 Charybdotoxin {Scorpion (Leiurus quinquestriatus h 90.56
d1pe4a_67 Scorpion toxin {Mexican scorpion (Centruroides nox 90.15
d1wpda_34 Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 5395 88.18
d1jlza_26 alpha-KTX, K+-channel blocker {Scorpion (Tityus ca 84.94
d1hp2a_37 alpha-KTX, K+-channel blocker {Brazilian scorpion 84.06
d1c55a_40 Butantoxin {Brazilian scorpion (Tityus serrulatus) 84.04
d1px9a_42 Ergtoxin (HERG specific toxin CnErg1) {Scorpion (C 83.8
d1sxma_39 Noxiustoxin {Mexican scorpion (Centruroides noxius 83.22
d2ptaa_35 Pandinus toxin {Emperor scorpion (Pandinus imperat 81.44
>d1gpsa_ g.3.7.5 (A:) gamma-Thionin {English wheat (Triticum turgidum) [TaxId: 4571]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Plant defensins
domain: gamma-Thionin
species: English wheat (Triticum turgidum) [TaxId: 4571]
Probab=99.79  E-value=7.2e-21  Score=105.14  Aligned_cols=47  Identities=32%  Similarity=0.805  Sum_probs=44.4

Q ss_pred             ccccccCccceecCCCccccHHHhccccCCCCceeecCCCCcceEeecCC
Q 034823           33 KQCSKRAQKWTGPCIKTGSCRNHCRKREGAVDGACHYDFPGFACFCYYNC   82 (82)
Q Consensus        33 ~~C~~~S~~~~G~C~~~~~C~~~C~~~Eg~~~G~C~~~~~~~~C~C~~~C   82 (82)
                      ++|+++|++|+|+|++++||+++|++ |||++|+|+++  .++|+|++||
T Consensus         1 r~C~s~S~~FkG~C~~~~NCa~vC~~-EgF~gG~C~g~--~RrC~Ctk~C   47 (47)
T d1gpsa_           1 KICRRRSAGFKGPCMSNKNCAQVCQQ-EGWGGGNCDGP--FRRCKCIRQC   47 (47)
T ss_dssp             CEEEEECSSCCSCCCSHHHHHHHHHH-TTCSEEEEETT--TTEEEEEEEC
T ss_pred             CcccccCCCCceecCCCccHHHHHhh-CCCCCCccCcc--CeeeeEeCCC
Confidence            57999999999999999999999996 99999999976  6899999998



>d1mr4a_ g.3.7.5 (A:) Floral defensin 1 {Common tobacco (Nicotiana tabacum), NAD1 [TaxId: 4097]} Back     information, alignment and structure
>d1n4na_ g.3.7.5 (A:) Floral defensin 1 {Garden petunia (Petunia x hybrida), PHD1 [TaxId: 4102]} Back     information, alignment and structure
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]} Back     information, alignment and structure
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]} Back     information, alignment and structure
>d1jkza_ g.3.7.5 (A:) Defensin 1 (PSD1) {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jxca_ g.3.7.5 (A:) Trypsin/chymotrypsin inhibitor ATT {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kv0a_ g.3.7.1 (A:) Tx10 alpha-like toxin {Chinese scorpion (Buthus martensii) [TaxId: 34649]} Back     information, alignment and structure
>d1fjna_ g.3.7.3 (A:) Defensin MGD-1 {Mediterranean mussel (Mytilus galloprovincialis) [TaxId: 29158]} Back     information, alignment and structure
>d2asca1 g.3.7.1 (A:1-65) alpha toxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1ahoa_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Androctonus australis hector), Toxin II [TaxId: 70175]} Back     information, alignment and structure
>d1snba_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), toxin m8 [TaxId: 34649]} Back     information, alignment and structure
>d1dq7a_ g.3.7.1 (A:) Scorpion toxin {Indian red scorpion (Buthus tamulus), neurotoxin [TaxId: 34647]} Back     information, alignment and structure
>d1bmra_ g.3.7.1 (A:) LQH III alpha-like toxin, LQH {Hebraei scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1nraa_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant V [TaxId: 218467]} Back     information, alignment and structure
>d1nh5a_ g.3.7.1 (A:) Scorpion toxin {Bark scorpion (Centruroides sculpturatus), cse-v5 [TaxId: 218467]} Back     information, alignment and structure
>d1r1ga_ g.3.7.2 (A:) Neurotoxin bmk37 {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]} Back     information, alignment and structure
>d1ozza_ g.3.7.4 (A:) Defensin ARD1 {Archaeoprepona demophon [TaxId: 191427]} Back     information, alignment and structure
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]} Back     information, alignment and structure
>d1npia_ g.3.7.1 (A:) Scorpion toxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1pjva_ g.3.7.2 (A:) Cobatoxin 1 {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d2sn3a_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, variant 3 [TaxId: 218467]} Back     information, alignment and structure
>d1t0za_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii), BmK IT-AP [TaxId: 34649]} Back     information, alignment and structure
>d1bcga_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]} Back     information, alignment and structure
>d1cn2a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius), toxin II [TaxId: 6878]} Back     information, alignment and structure
>d1m2sa_ g.3.7.2 (A:) Bmtx3 {Buthus martensii karsch [TaxId: 34649]} Back     information, alignment and structure
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]} Back     information, alignment and structure
>d2b3ca_ g.3.7.1 (A:) Scorpion toxin {Centruroides sculpturatus, beta [TaxId: 218467]} Back     information, alignment and structure
>d1biga_ g.3.7.2 (A:) Bmtx1 {Buthus martensii [TaxId: 34649]} Back     information, alignment and structure
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]} Back     information, alignment and structure
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]} Back     information, alignment and structure
>d1pe4a_ g.3.7.1 (A:) Scorpion toxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1wpda_ g.3.7.2 (A:) Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 53956]} Back     information, alignment and structure
>d1jlza_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Scorpion (Tityus cambridgei) [TaxId: 184226]} Back     information, alignment and structure
>d1hp2a_ g.3.7.2 (A:) alpha-KTX, K+-channel blocker {Brazilian scorpion (Tityus serrulatus), Tstx-k alpha [TaxId: 6887]} Back     information, alignment and structure
>d1c55a_ g.3.7.2 (A:) Butantoxin {Brazilian scorpion (Tityus serrulatus) [TaxId: 6887]} Back     information, alignment and structure
>d1px9a_ g.3.7.2 (A:) Ergtoxin (HERG specific toxin CnErg1) {Scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d1sxma_ g.3.7.2 (A:) Noxiustoxin {Mexican scorpion (Centruroides noxius) [TaxId: 6878]} Back     information, alignment and structure
>d2ptaa_ g.3.7.2 (A:) Pandinus toxin {Emperor scorpion (Pandinus imperator), PITX-Ka [TaxId: 55084]} Back     information, alignment and structure