Citrus Sinensis ID: 034889

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHccEEcccccHHHHHccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHcccEEcccccEEEEHcccccEEccEEEEcccccccccc
Coil and Loop (DISEMBL)
mqlrdefwdtaphyggrkGKIWDALRAAAEADLSLAQAIVDSAGvivqsadlticydergakyelpkyvlseptnlireg
Flexible Loop (DISEMBL)
mqlrdefwdtaphyggrkGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDergakyelpkyvlseptnlireg
Low Complexity Region (SEG)
MQLRDEFWDTAPHYGGRKGKIWDalraaaeadlslaqaIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG
Disordered region (IsUnstruct)
******FWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVL**********
Disordered Region (DISOPRED)
*QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNL****
Disordered Region (DISEMBL)
MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG
Disordered Region (DISPRO)
*QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIREG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q6DG43	240	Ubiquitin domain-containi	yes	no	0.937	0.312	0.575	2e-18
Q4V8W7	227	Ubiquitin domain-containi	no	no	0.937	0.330	0.587	5e-18
Q8WUN7	234	Ubiquitin domain-containi	yes	no	0.937	0.320	0.562	8e-18
Q5EAE3	234	Ubiquitin domain-containi	yes	no	0.937	0.320	0.562	8e-18
Q6PGH0	234	Ubiquitin domain-containi	yes	no	0.937	0.320	0.562	8e-18
Q6GL38	240	Ubiquitin domain-containi	no	no	0.937	0.312	0.587	9e-18
Q640W6	234	Ubiquitin domain-containi	N/A	no	0.937	0.320	0.562	9e-18
Q3ZBQ1	227	Ubiquitin domain-containi	no	no	0.937	0.330	0.562	2e-13
Q68FV8	227	Ubiquitin domain-containi	no	no	0.937	0.330	0.562	2e-13
Q91WB7	227	Ubiquitin domain-containi	no	no	0.937	0.330	0.562	2e-13

>sp|Q6DG43|UBTD2_DANRE Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA+A    D  LAQAI+D A + +    LT CYDE 
Sbjct: 54  RDEFWDTAPAFEGRK-EIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDEL 112

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y LS P N+I E
Sbjct: 113 GNRYQLPVYCLSPPVNMIEE 132

Danio rerio (taxid: 7955)

>sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAIVD A + +    LT CYDE 
Sbjct: 52  RDEFWDTAPAFEGRK-EIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDEL 110

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P NLI E
Sbjct: 111 GNRYQLPVYCLAPPVNLISE 130

Danio rerio (taxid: 7955)

>sp|Q8WUN7|UBTD2_HUMAN Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    LT CYDE 
Sbjct: 54  RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132

Homo sapiens (taxid: 9606)

>sp|Q5EAE3|UBTD2_BOVIN Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    LT CYDE 
Sbjct: 54  RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132

Bos taurus (taxid: 9913)

>sp|Q6PGH0|UBTD2_MOUSE Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    LT CYDE 
Sbjct: 54  RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132

Mus musculus (taxid: 10090)

>sp|Q6GL38|UBTD1_XENTR Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis GN=ubtd1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAIVD A + +    LT CYDE 
Sbjct: 55  RDEFWDTAPAFEGRK-EIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDEL 113

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P NLI E
Sbjct: 114 GTRYQLPVYCLAPPVNLIME 133

Xenopus tropicalis (taxid: 8364)

>sp|Q640W6|UBTD1_XENLA Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    LT CYDE 
Sbjct: 54  RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDEL 112

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132

Xenopus laevis (taxid: 8355)

>sp|Q3ZBQ1|UBTD1_BOVIN Ubiquitin domain-containing protein 1 OS=Bos taurus GN=UBTD1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    L  CYDE 
Sbjct: 51  RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129

Bos taurus (taxid: 9913)

>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    L  CYDE 
Sbjct: 51  RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129

Rattus norvegicus (taxid: 10116)

>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)

Query: 4   RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    L  CYDE 
Sbjct: 51  RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109

Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
225461728	114	PREDICTED: ubiquitin domain-containing p	0.987	0.692	0.912	6e-35
224117000	114	predicted protein [Populus trichocarpa]	0.975	0.684	0.924	6e-35
357452077	114	Ubiquitin domain-containing protein [Med	0.975	0.684	0.911	1e-34
388512091	114	unknown [Lotus japonicus]	0.975	0.684	0.911	1e-34
351721822	114	uncharacterized protein LOC100306399 [Gl	0.962	0.675	0.923	2e-34
388510626	114	unknown [Lotus japonicus]	0.975	0.684	0.898	4e-34
356544112	114	PREDICTED: ubiquitin domain-containing p	0.962	0.675	0.910	5e-34
225443726	114	PREDICTED: ubiquitin domain-containing p	0.975	0.684	0.886	2e-33
449456569	111	PREDICTED: ubiquitin domain-containing p	0.95	0.684	0.896	4e-33
18404455	114	Ubiquitin domain-containing protein [Ara	0.987	0.692	0.862	7e-33

>gi|225461728|ref|XP_002285516.1| PREDICTED: ubiquitin domain-containing protein 1 [Vitis vinifera] gi|147767244|emb|CAN66729.1| hypothetical protein VITISV_025684 [Vitis vinifera] gi|302142875|emb|CBI20170.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/80 (91%), Positives = 78/80 (97%), Gaps = 1/80 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           MQ+RDEFWDTAPHYGG+K +IWDALRAAAEADL+LAQAIVDSAGVIVQSADLTICYDERG
Sbjct: 36  MQMRDEFWDTAPHYGGQK-EIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG 94

Query: 61  AKYELPKYVLSEPTNLIREG 80
           AKYELP YVLSEPTNLIR+G
Sbjct: 95  AKYELPHYVLSEPTNLIRDG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117000|ref|XP_002317449.1| predicted protein [Populus trichocarpa] gi|222860514|gb|EEE98061.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           MQ+RDEFWDTAPHYGGRK +IWDALRAAA+A+LSLAQAIVDSAGVIVQ+ADLTICYDERG
Sbjct: 36  MQMRDEFWDTAPHYGGRK-EIWDALRAAADAELSLAQAIVDSAGVIVQNADLTICYDERG 94

Query: 61  AKYELPKYVLSEPTNLIRE 79
           AKYELPKYVLSEPTNLIRE
Sbjct: 95  AKYELPKYVLSEPTNLIRE 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452077|ref|XP_003596315.1| Ubiquitin domain-containing protein [Medicago truncatula] gi|355485363|gb|AES66566.1| Ubiquitin domain-containing protein [Medicago truncatula] gi|388514353|gb|AFK45238.1| unknown [Medicago truncatula]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           +QLRDEFWDTAPHYGGRK +IWDALRAAAEADLSLAQAIVDSAGVIVQS+DLT+CYDERG
Sbjct: 36  IQLRDEFWDTAPHYGGRK-EIWDALRAAAEADLSLAQAIVDSAGVIVQSSDLTVCYDERG 94

Query: 61  AKYELPKYVLSEPTNLIRE 79
           AKYELPKYVLSEPTN+I+E
Sbjct: 95  AKYELPKYVLSEPTNMIQE 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512091|gb|AFK44107.1| unknown [Lotus japonicus]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           +QLRDEFWDTAPHYGGRK +IWDALRAAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERG
Sbjct: 36  IQLRDEFWDTAPHYGGRK-EIWDALRAAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERG 94

Query: 61  AKYELPKYVLSEPTNLIRE 79
           AKYELPKYVLSEPTNLIR+
Sbjct: 95  AKYELPKYVLSEPTNLIRD 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721822|ref|NP_001238246.1| uncharacterized protein LOC100306399 [Glycine max] gi|255628415|gb|ACU14552.1| unknown [Glycine max]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 77/78 (98%), Gaps = 1/78 (1%)

Query: 2   QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGA 61
           QLRDEFWDTAPHYGGRK +IWDALRAAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERGA
Sbjct: 37  QLRDEFWDTAPHYGGRK-EIWDALRAAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERGA 95

Query: 62  KYELPKYVLSEPTNLIRE 79
           KYELPKYVLSEPTNLIR+
Sbjct: 96  KYELPKYVLSEPTNLIRD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510626|gb|AFK43379.1| unknown [Lotus japonicus]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 78/79 (98%), Gaps = 1/79 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           +QLRDEFWDTAPH+GGRK +IWDALRAAAEADL+LAQAIVDSAGVIVQS+DLT+CYDERG
Sbjct: 36  IQLRDEFWDTAPHHGGRK-EIWDALRAAAEADLTLAQAIVDSAGVIVQSSDLTVCYDERG 94

Query: 61  AKYELPKYVLSEPTNLIRE 79
           AKYELPKYVLSEPTNLIR+
Sbjct: 95  AKYELPKYVLSEPTNLIRD 113

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544112|ref|XP_003540499.1| PREDICTED: ubiquitin domain-containing protein 1-like [Glycine max]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 76/78 (97%), Gaps = 1/78 (1%)

Query: 2   QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGA 61
           QLRDEFWDTAPHYGGRK +IWDALRAAAEADL+LAQ IVDSAGVIVQS+DLT+CYDERGA
Sbjct: 37  QLRDEFWDTAPHYGGRK-EIWDALRAAAEADLTLAQVIVDSAGVIVQSSDLTVCYDERGA 95

Query: 62  KYELPKYVLSEPTNLIRE 79
           KYELPKYVLSEPTNLIR+
Sbjct: 96  KYELPKYVLSEPTNLIRD 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443726|ref|XP_002267858.1| PREDICTED: ubiquitin domain-containing protein 1 [Vitis vinifera] gi|297740542|emb|CBI30724.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 75/79 (94%), Gaps = 1/79 (1%)

Query: 2   QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGA 61
           Q+RDEFWDTAPHYGG+K +IWDALRAA EADL+LAQAIVDSAGVIVQSADLT CYDERGA
Sbjct: 37  QMRDEFWDTAPHYGGQK-EIWDALRAATEADLTLAQAIVDSAGVIVQSADLTTCYDERGA 95

Query: 62  KYELPKYVLSEPTNLIREG 80
           KYELPKYVLSEPTNLIR+ 
Sbjct: 96  KYELPKYVLSEPTNLIRDN 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456569|ref|XP_004146021.1| PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] gi|449518063|ref|XP_004166063.1| PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 76/77 (98%), Gaps = 1/77 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           +++RDEFWDTAPHYGGRK +IWDALRAAAEADL+LAQAIVDSAG+IVQSADLTICYDERG
Sbjct: 36  VRMRDEFWDTAPHYGGRK-EIWDALRAAAEADLTLAQAIVDSAGIIVQSADLTICYDERG 94

Query: 61  AKYELPKYVLSEPTNLI 77
           AKYELPKYVLSEPTNL+
Sbjct: 95  AKYELPKYVLSEPTNLV 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404455|ref|NP_564630.1| Ubiquitin domain-containing protein [Arabidopsis thaliana] gi|297847740|ref|XP_002891751.1| hypothetical protein ARALYDRAFT_474470 [Arabidopsis lyrata subsp. lyrata] gi|7769863|gb|AAF69541.1|AC008007_16 F12M16.29 [Arabidopsis thaliana] gi|13877803|gb|AAK43979.1|AF370164_1 unknown protein [Arabidopsis thaliana] gi|16323476|gb|AAL15232.1| unknown protein [Arabidopsis thaliana] gi|297337593|gb|EFH68010.1| hypothetical protein ARALYDRAFT_474470 [Arabidopsis lyrata subsp. lyrata] gi|332194816|gb|AEE32937.1| Ubiquitin domain-containing protein [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 75/80 (93%), Gaps = 1/80 (1%)

Query: 1   MQLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERG 60
           M+LR+EFWDTAPHYGGRK +IWDALRAAAEAD+SLAQAIVDSAGVIVQ+ DLT+CYDERG
Sbjct: 36  MKLREEFWDTAPHYGGRK-EIWDALRAAAEADISLAQAIVDSAGVIVQNTDLTVCYDERG 94

Query: 61  AKYELPKYVLSEPTNLIREG 80
           AKYELPKYVLSEPTNL  E 
Sbjct: 95  AKYELPKYVLSEPTNLEEEN 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2009685	114	AT1G53400 [Arabidopsis thalian	0.975	0.684	0.696	1.1e-25
TAIR|locus:2171933	118	AT5G45740 "AT5G45740" [Arabido	0.95	0.644	0.623	3.8e-23
TAIR|locus:2015566	114	AT1G16960 "AT1G16960" [Arabido	0.937	0.657	0.610	1.1e-21
ZFIN|ZDB-GENE-040718-473	244	ubtd2 "ubiquitin domain contai	0.937	0.307	0.437	9.1e-13
ZFIN|ZDB-GENE-050913-62	227	ubtd1b "ubiquitin domain conta	0.937	0.330	0.45	9.1e-13
FB|FBgn0264712	249	CG1172 [Drosophila melanogaste	0.937	0.301	0.437	1.2e-12
ZFIN|ZDB-GENE-070424-93	230	ubtd1a "ubiquitin domain conta	0.937	0.326	0.437	1.5e-12
UNIPROTKB|E1C4N1	234	UBTD2 "Uncharacterized protein	0.937	0.320	0.425	2.4e-12
UNIPROTKB|Q5EAE3	234	UBTD2 "Ubiquitin domain-contai	0.937	0.320	0.425	2.4e-12
UNIPROTKB|E2QTA0	234	UBTD2 "Uncharacterized protein	0.937	0.320	0.425	2.4e-12

TAIR|locus:2009685 AT1G53400 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 55/79 (69%), Positives = 60/79 (75%)

Query:     1 MQLRDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERG 60
             M+LR+EFWDTAPHYGGRK +IWD               IVDSAGVIVQ+ DLT+CYDERG
Sbjct:    36 MKLREEFWDTAPHYGGRK-EIWDALRAAAEADISLAQAIVDSAGVIVQNTDLTVCYDERG 94

Query:    61 AKYELPKYVLSEPTNLIRE 79
             AKYELPKYVLSEPTNL  E
Sbjct:    95 AKYELPKYVLSEPTNLEEE 113

GO:0005737 "cytoplasm" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2171933 AT5G45740 "AT5G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 48/77 (62%), Positives = 60/77 (77%)

Query:     3 LRDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXXXXXIVDSAGVIVQSADLTICYDERGAK 62
             +R+EFWDT+PHYGG++ +IW+               IVDSAGVIVQ+ DLT+C+DERGA+
Sbjct:    40 MREEFWDTSPHYGGQR-EIWEALRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGAR 98

Query:    63 YELPKYVLSEPTNLIRE 79
             YELP+YVLSEPTNLIRE
Sbjct:    99 YELPRYVLSEPTNLIRE 115

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015566 AT1G16960 "AT1G16960" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 47/77 (61%), Positives = 58/77 (75%)

Query:     2 QLRDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXXXX-XIVDSAGVIVQSADLTICYDERG 60
             Q+R+EFWDTAPHYGG+K +IWD                I++SAGVIVQ+ DLTICYDE+G
Sbjct:    36 QMREEFWDTAPHYGGKK-EIWDALRAAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKG 94

Query:    61 AKYELPKYVLSEPTNLI 77
             +KYELPKYVL +P+NLI
Sbjct:    95 SKYELPKYVLRDPSNLI 111

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

ZFIN|ZDB-GENE-040718-473 ubtd2 "ubiquitin domain containing 2" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/80 (43%), Positives = 43/80 (53%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   I+D A + +    LT CYDE 
Sbjct:    58 RDEFWDTAPAFEGRK-EIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDEL 116

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y LS P N+I E
Sbjct:   117 GNRYQLPVYCLSPPVNMIEE 136

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050913-62 ubtd1b "ubiquitin domain containing 1b" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/80 (45%), Positives = 43/80 (53%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   IVD A + +    LT CYDE 
Sbjct:    52 RDEFWDTAPAFEGRK-EIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDEL 110

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y L+ P NLI E
Sbjct:   111 GNRYQLPVYCLAPPVNLISE 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0264712 CG1172 [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/80 (43%), Positives = 45/80 (56%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   I+D A V V +  LT CYDE 
Sbjct:    63 RDEFWDTAPAFDGRK-EIWDALRAATTAAEGLDFQMAQAILDGANVSVPNGYLTECYDEL 121

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y++P Y LS P N+++E
Sbjct:   122 GTQYKVPIYCLSYPINIVKE 141

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-070424-93 ubtd1a "ubiquitin domain containing 1a" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/80 (43%), Positives = 42/80 (52%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXX----XXXXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   IVD A + +    L  CYDE 
Sbjct:    55 RDEFWDTAPAFDGRK-EIWDALKAAAVAIECNDHQLAQAIVDGASITLPHGSLMECYDEL 113

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y LS P NL+ E
Sbjct:   114 GNRYQLPAYCLSPPVNLVSE 133

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1C4N1 UBTD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 34/80 (42%), Positives = 43/80 (53%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   I+D A + +    LT CYDE 
Sbjct:    54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y L+ P N+I E
Sbjct:   113 GNRYQLPVYCLAPPINMIEE 132

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5EAE3 UBTD2 "Ubiquitin domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 34/80 (42%), Positives = 43/80 (53%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   I+D A + +    LT CYDE 
Sbjct:    54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y L+ P N+I E
Sbjct:   113 GNRYQLPVYCLAPPINMIEE 132

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2QTA0 UBTD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 34/80 (42%), Positives = 43/80 (53%)

Query:     4 RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
             RDEFWDTAP + GRK +IWD                   I+D A + +    LT CYDE 
Sbjct:    54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112

Query:    60 GAKYELPKYVLSEPTNLIRE 79
             G +Y+LP Y L+ P N+I E
Sbjct:   113 GNRYQLPVYCLAPPINMIEE 132

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0246 hypothetical protein (114 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG0013	231	consensus Uncharacterized conserved protein [Funct	99.98
KOG0013	231	consensus Uncharacterized conserved protein [Funct	99.69

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.98  E-value=1.1e-33  Score=212.58  Aligned_cols=77  Identities=55%  Similarity=0.935  Sum_probs=73.0

Q ss_pred             hhhhhhhhcCcCCCCchhhHHHHHHHHHH----hcHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCcc
Q 034889            2 QLRDEFWDTAPHYGGRKGKIWDALRAAAE----ADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI   77 (80)
Q Consensus         2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e----~dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~Nl~   77 (80)
                      .+|+|||||+|+|+||+ |||+|||+|.-    .|.+.||+|||+|+||+|+|+|+.|||++|+.|.+|.||++-|.|++
T Consensus        46 skRdEFWdTapAf~GrK-EIWDaL~aa~ta~e~~d~e~Aqai~dgA~~tiP~g~l~ecydelg~~y~~p~ycls~p~n~~  124 (231)
T KOG0013|consen   46 SKRDEFWDTAPAFGGRK-EIWDALHAAVTAAEEGDAEAAQAILDGADLTIPEGDLSECYDELGGTYYEPIYCLSRPPNAF  124 (231)
T ss_pred             hhhhhhhhcccccCCcH-HHHHHHHHHHHHHhcccHHHHHHHHhccccccCCcchHHHHHhhCCeEeecceeeccCchHH
Confidence            58999999999999999 99999999875    39999999999999999999999999999999999999999999987


Q ss_pred             cC
Q 034889           78 RE   79 (80)
Q Consensus        78 ~~   79 (80)
                      .+
T Consensus       125 ~E  126 (231)
T KOG0013|consen  125 AE  126 (231)
T ss_pred             Hh
Confidence            43

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=1.1e-17  Score=126.32  Aligned_cols=76  Identities=46%  Similarity=0.689  Sum_probs=73.1

Q ss_pred             hhhhhhhhcCcCCCCchhhHHHHHHHHHHhcHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCcccC
Q 034889            2 QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRE   79 (80)
Q Consensus         2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e~dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~Nl~~~   79 (80)
                      +.|++||+|.+|++|.. |||.+||||.+.| ..+|.|+.++++.+-+-+|+.|||+.|.+|.||.+|+++|.|+...
T Consensus       154 tT~~d~~lta~~~Dtv~-eik~~L~Aaeg~D-~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVlq~~~Nl~~q  229 (231)
T KOG0013|consen  154 TTREDFWLTAPHYDTVG-EIKRALRAAEGVD-PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVLQEPKNLSPQ  229 (231)
T ss_pred             hhhhheeecccCcCcHH-HHHHHHHHhhccc-hhhheeeccCCceeccccceeeeecCCCEEEEEEEeccCCCCCCCC
Confidence            57999999999999998 9999999999899 9999999999999999999999999999999999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2ksn_A	137	Solution Structure Of The N-Terminal Domain Of Dc-U		4e-12

>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2 Length = 137

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 4   RDEFWDTAPHYGGRKGKIWDXXXXXXXXXXXX----XXXIVDSAGVIVQSADLTICYDER 59
           RDEFWDTAP + GRK +IWD                   I+D A + +    LT CYDE 
Sbjct: 42  RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 100
Query: 60  GAKYELPKYVLSEPTNLIRE 79
           G +Y+LP Y L+ P N+I E
Sbjct: 101 GNRYQLPVYCLAPPINMIEE 120
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2ksn_A	137	Ubiquitin domain-containing protein 2; UBTD2, DC-U	2e-34

>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens} Length = 137

 Score =  113 bits (283), Expect = 2e-34
 Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 5/82 (6%)

Query: 2   QLRDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYD 57
             RDEFWDTAP + GRK +IWDAL+AAA A    D  LAQAI+D A + +    LT CYD
Sbjct: 40  SKRDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYD 98

Query: 58  ERGAKYELPKYVLSEPTNLIRE 79
           E G +Y+LP Y L+ P N+I E
Sbjct: 99  ELGNRYQLPVYCLAPPINMIEE 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
2ksn_A	137	Ubiquitin domain-containing protein 2; UBTD2, DC-U	100.0

>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=1e-46  Score=265.03  Aligned_cols=77  Identities=58%  Similarity=1.020  Sum_probs=74.6

Q ss_pred             hhhhhhhhcCcCCCCchhhHHHHHHHHHHh----cHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCcc
Q 034889            2 QLRDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI   77 (80)
Q Consensus         2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e~----dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~Nl~   77 (80)
                      +||+|||||||+||||+ |||+|||+||++    |++|||+|||+||||||+|||+.|||++|++|+||+||+|+|+||+
T Consensus        40 ~~R~EFWDT~p~~~Gr~-EIW~ALraA~~~~e~~Dl~tAQ~IldaAgItvp~gdL~~cYDe~G~~Y~LP~yvls~P~Nl~  118 (137)
T 2ksn_A           40 SKRDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI  118 (137)
T ss_dssp             HHHHHHHTTSSTTCCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCCSSEEEETTTEEEECCGGGTCCSTTTC
T ss_pred             HHHHHHHhcCCccCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccCCcHHHHHhccCCccCCCeeEeeCCcccc
Confidence            79999999999999999 999999999963    9999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 034889           78 RE   79 (80)
Q Consensus        78 ~~   79 (80)
                      ++
T Consensus       119 ~~  120 (137)
T 2ksn_A          119 EE  120 (137)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00