Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 78
PLN02487 569
PLN02487, PLN02487, zeta-carotene desaturase
1e-39 TIGR02732 474
TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot
5e-34 TIGR02731 453
TIGR02731, phytoene_desat, phytoene desaturase
2e-11 COG3349 485
COG3349, COG3349, Uncharacterized conserved protei
3e-11 TIGR03467 411
TIGR03467, HpnE, squalene-associated FAD-dependent
4e-07 PLN02612 567
PLN02612, PLN02612, phytoene desaturase
5e-07 pfam01593 444
pfam01593, Amino_oxidase, Flavin containing amine
0.003
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase
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Score = 136 bits (344), Expect = 1e-39
Identities = 53/70 (75%), Positives = 58/70 (82%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPL ND+I+ +V KQVL LFPSS+GLEV WSS VKIGQSL E PG DPFR DQKTP+ N
Sbjct: 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISN 519
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 520 FFLAGSYTKQ 529
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase
Back Show alignment and domain information
Score = 119 bits (301), Expect = 5e-34
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MP N+EI +RV KQV ALFPSS+ L++ WSS VK+ QSL E PG DPFR DQKTP+ N
Sbjct: 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISN 443
Query: 61 FFLAGSYTKQ 70
FFLAGSYT+Q
Sbjct: 444 FFLAGSYTQQ 453
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase
Back Show alignment and domain information
Score = 57.2 bits (138), Expect = 2e-11
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 PNDEIIRRVAKQVLALFPSSQGLE----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
++EII ++ LFP+ + ++ VK +S+ PG+ +R QKTP+
Sbjct: 362 SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIP 421
Query: 60 NFFLAGSYTKQ 70
NFFLAG YTKQ
Sbjct: 422 NFFLAGDYTKQ 432
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Score = 56.7 bits (137), Expect = 3e-11
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLA 64
++ I+ K++ L PS + SS + QSL G PG +R +QKTP+ N LA
Sbjct: 375 DEAIVATFEKELYELVPS-LAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLA 433
Query: 65 GSYTKQ 70
G YTKQ
Sbjct: 434 GDYTKQ 439
>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase
Back Show alignment and domain information
Score = 45.0 bits (107), Expect = 4e-07
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNF 61
LP +E+ R+ ++ FP G + +W+ +K ++ PG + R +TP N
Sbjct: 321 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNL 380
Query: 62 FLAGSYT 68
FLAG +T
Sbjct: 381 FLAGDWT 387
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411
>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase
Back Show alignment and domain information
Score = 44.8 bits (106), Expect = 5e-07
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFP----SSQGL-EVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+++II K++ LFP + Q +++ VK +S+ P +P R Q++P++
Sbjct: 454 DEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIE 513
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 514 GFYLAGDYTKQ 524
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase
Back Show alignment and domain information
Score = 34.1 bits (78), Expect = 0.003
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 3 LPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDP--FRRDQK 55
L ++E++ V + + L + V + P D +R +
Sbjct: 348 LSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRYRPALR 407
Query: 56 TPV-KNFFLAGSYTKQ 70
TPV F AG +T
Sbjct: 408 TPVGPGLFFAGEHTSG 423
This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
78
PLN02487 569
zeta-carotene desaturase
99.78 TIGR02732 474
zeta_caro_desat carotene 7,8-desaturase. Carotene
99.78 PLN02612 567
phytoene desaturase
99.35 TIGR02731 453
phytoene_desat phytoene desaturase. Plants and cya
99.27 TIGR03467 419
HpnE squalene-associated FAD-dependent desaturase.
99.09 PRK07233 434
hypothetical protein; Provisional
99.0 COG3349 485
Uncharacterized conserved protein [Function unknow
98.97 TIGR00562 462
proto_IX_ox protoporphyrinogen oxidase. This prote
98.12 PF01593 450
Amino_oxidase: Flavin containing amine oxidoreduct
98.04 PLN02576 496
protoporphyrinogen oxidase
97.97 PRK11883 451
protoporphyrinogen oxidase; Reviewed
97.97 PRK07208 479
hypothetical protein; Provisional
97.92 TIGR02733 492
desat_CrtD C-3',4' desaturase CrtD. Members of thi
97.89 TIGR02730 493
carot_isom carotene isomerase. Members of this fam
97.71 TIGR02734 502
crtI_fam phytoene desaturase. Phytoene is converte
97.63 PRK12416 463
protoporphyrinogen oxidase; Provisional
97.56 PLN02268 435
probable polyamine oxidase
97.24 KOG4254 561
consensus Phytoene desaturase [Coenzyme transport
96.99 COG1232 444
HemY Protoporphyrinogen oxidase [Coenzyme metaboli
96.37 COG1233 487
Phytoene dehydrogenase and related proteins [Secon
95.86 PLN02529 738
lysine-specific histone demethylase 1
95.21 KOG0029 501
consensus Amine oxidase [Secondary metabolites bio
94.57 PLN02976 1713
amine oxidase
94.5 PLN02676 487
polyamine oxidase
94.21 PLN03000 881
amine oxidase
94.09 PLN02328 808
lysine-specific histone demethylase 1 homolog
93.87 PF01134 392
GIDA: Glucose inhibited division protein A; InterP
91.99 PRK05335 436
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
90.43 PLN02568 539
polyamine oxidase
90.24 TIGR00137 433
gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo
88.7 COG3380 331
Predicted NAD/FAD-dependent oxidoreductase [Genera
87.16
>PLN02487 zeta-carotene desaturase
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Probab=99.78 E-value=7.1e-19 Score=132.94 Aligned_cols=73 Identities=73% Similarity=1.098 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
+++++|||+++++++|.++||.+..+.+.+++|+|+++|||.+.||++..||.++|+++|||||||||+|.-|
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP 532 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI 532 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc
Confidence 4689999999999999999999777788999999999999999999999999999999999999999998654
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase
Back Show alignment and domain information
Probab=99.78 E-value=1.1e-18 Score=128.84 Aligned_cols=73 Identities=64% Similarity=0.969 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
+++++|||+++++++|+++||....+++++++|+|+++|+|.+.||++.+||+++|+++|||||||||+|.-|
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p 456 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI 456 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch
Confidence 3689999999999999999998777889999999999999999999999999999999999999999998544
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
>PLN02612 phytoene desaturase
Back Show alignment and domain information
Probab=99.35 E-value=3.5e-12 Score=96.25 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC-----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS-----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~-----~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|+++||.. ..+.+..+.+++.+++++.+.||....||.++||++|||+|||||.+.
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~ 525 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQK 525 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCC
Confidence 5789999999999999999964 236678888999999999999999989999999999999999999875
>TIGR02731 phytoene_desat phytoene desaturase
Back Show alignment and domain information
Probab=99.27 E-value=2e-11 Score=88.82 Aligned_cols=73 Identities=36% Similarity=0.569 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccccccC
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~----~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~~ 74 (78)
.+++||++++++++|.++||.. ....+++..++++++++|.+.||...++|..++|++|||+||||+++.-++
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g 436 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA 436 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence 5789999999999999999852 244577788999999999999998888999999999999999999976554
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase
Back Show alignment and domain information
Probab=99.09 E-value=4.2e-10 Score=79.75 Aligned_cols=73 Identities=27% Similarity=0.540 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccccccC
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~~ 74 (78)
.+++||+++.++++|.+++|......+.+.++.+.+++.+.+.||....+|...++++|||+||||+++..++
T Consensus 329 ~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~ 401 (419)
T TIGR03467 329 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPA 401 (419)
T ss_pred cCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcc
Confidence 5789999999999999999965445667788999999999998998777998889999999999999975443
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
>PRK07233 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.00 E-value=1.7e-09 Score=77.27 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++++++++++++|.+++|......++...+.|+++|.+.+.||....+|...++++|||+|||++..+
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~ 408 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYP 408 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCC
Confidence 4688999999999999999976556788899999999999999998788999999999999999954433
>COG3349 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=98.97 E-value=6.2e-10 Score=83.41 Aligned_cols=69 Identities=38% Similarity=0.534 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
..+++++...+.+++..++|....++ .+++++++.++.+...||++.+||.+.||++|+++||||+.+-
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~ 440 (485)
T COG3349 372 FESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQP 440 (485)
T ss_pred ccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecC
Confidence 35788999999999999999865566 7788999999999999999999999999999999999999854
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase
Back Show alignment and domain information
Probab=98.12 E-value=2.6e-06 Score=61.85 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC----CCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD----QKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~----~~T~~~nL~lAGDwt~~ 70 (78)
+++++|+++.+.++|.++++.. ..+....+.+.+.|.+.+.+|.....+. ..+..+||++||||...
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g 439 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG 439 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC
Confidence 5789999999999999999743 3367788999999999999997544443 33556899999999763
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)
Back Show alignment and domain information
Probab=98.04 E-value=1.5e-06 Score=60.28 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeC-----CceecCCCCCCC--CCCCCCCCC-CCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIG-----QSLCGEGPGKDP--FRRDQKTPV-KNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~-----~At~~~~pg~~~--~RP~~~T~~-~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|++++|......+....+.+.. +.++.+.+.... .+|...+++ +|||+||||+++.
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~ 430 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPG 430 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSS
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCC
Confidence 578999999999999999995222333333343322 333443333333 577788898 7999999999966
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
>PLN02576 protoporphyrinogen oxidase
Back Show alignment and domain information
Probab=97.97 E-value=3.9e-06 Score=61.74 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC---CC--CCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT---PV--KNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T---~~--~nL~lAGDwt~~~ 71 (78)
.+++||+++.+.++|.++++......+....+.+.+.|.+.+.+|+....+..+. .. +||++||||+...
T Consensus 393 ~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~ 467 (496)
T PLN02576 393 SASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGV 467 (496)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCc
Confidence 4789999999999999999853212334455677788999999998654443332 22 7999999999743
>PRK11883 protoporphyrinogen oxidase; Reviewed
Back Show alignment and domain information
Probab=97.97 E-value=1.2e-05 Score=57.98 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
.++++++++.++++|+++++.. .......+.+.+.|.+.+.||.... ++.... ++|||+||||+.
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~ 430 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE 430 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC
Confidence 4679999999999999998742 3345678888889999899986533 233333 789999999986
>PRK07208 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=97.92 E-value=5.4e-06 Score=60.75 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC---CCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD---QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~---~~T~~~nL~lAGDwt~ 69 (78)
.++||||++++.++|.++.+ .....++.++|.+.++|.+.+.+|.....+. ..++.+||++||++..
T Consensus 368 ~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~ 437 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGM 437 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccc
Confidence 47899999999999999854 3357788999999999999999887655443 2367899999998764
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD
Back Show alignment and domain information
Probab=97.89 E-value=5.8e-05 Score=55.73 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEE----------EeCCceecCCCCCCC---CCCCCCCCCCCEEEeccccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFV----------KIGQSLCGEGPGKDP---FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~----------~e~~At~~~~pg~~~---~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
++++.+++++.|++.+|+.. ..++...+. ....+.|.......+ .+|..+|+++||||||++|.+.
T Consensus 393 k~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG 471 (492)
T TIGR02733 393 KKQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG 471 (492)
T ss_pred HHHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC
Confidence 46688999999999999752 444444332 122455555443322 3566689999999999999764
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
>TIGR02730 carot_isom carotene isomerase
Back Show alignment and domain information
Probab=97.71 E-value=9.3e-05 Score=54.87 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---------eCCceecCCCCCC---CCC-CCCCCCCCCEEEeccccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---------IGQSLCGEGPGKD---PFR-RDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~---------e~~At~~~~pg~~---~~R-P~~~T~~~nL~lAGDwt~~~ 71 (78)
++++.+++++.|++.+|+.. ..++...+.. ..+..+...+... ..+ |..+|+++||||||+||.+.
T Consensus 393 k~~~~~~il~~l~~~~p~l~-~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG 471 (493)
T TIGR02730 393 KEADAERIIDRLEKIFPGLD-SAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG 471 (493)
T ss_pred HHHHHHHHHHHHHHHCCChh-hcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC
Confidence 56689999999999999752 3444333321 1122221111100 122 66789999999999999653
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
>TIGR02734 crtI_fam phytoene desaturase
Back Show alignment and domain information
Probab=97.63 E-value=0.00018 Score=53.18 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEE----------EeCCceecCCCCCC---CCCCC-CCCCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFV----------KIGQSLCGEGPGKD---PFRRD-QKTPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~-~P~~~~~~v~~~~v~----------~e~~At~~~~pg~~---~~RP~-~~T~~~nL~lAGDwt~ 69 (78)
++++.+++++.|++. +|+.. ..|+...+. ....+.+...+... ..||. ..|+++||||||+||.
T Consensus 391 k~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~ 469 (502)
T TIGR02734 391 GPRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTH 469 (502)
T ss_pred HHHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCC
Confidence 467889999999997 99753 334433322 12345565543322 35775 4789999999999997
Q ss_pred cc
Q 034934 70 QY 71 (78)
Q Consensus 70 ~~ 71 (78)
+.
T Consensus 470 pG 471 (502)
T TIGR02734 470 PG 471 (502)
T ss_pred CC
Confidence 64
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
>PRK12416 protoporphyrinogen oxidase; Provisional
Back Show alignment and domain information
Probab=97.56 E-value=8.6e-05 Score=54.30 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++||+++.++++|+++|+.. ..+....+.+-+.+.+...+|.... ++....+.+||++||||+...
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 4689999999999999999743 3566788888888888887774221 122334568999999998754
>PLN02268 probable polyamine oxidase
Back Show alignment and domain information
Probab=97.24 E-value=0.00044 Score=50.14 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---CCc--eec-CCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---GQS--LCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~~A--t~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|.+++|.. ..+....+.+- +.+ .|. +.||.. ..++....|+.|||+||++|++..+
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~ 413 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP 413 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc
Confidence 4789999999999999999853 33444444432 211 122 356642 2345556788899999999987543
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Back Show alignment and domain information
Probab=96.99 E-value=0.0032 Score=48.00 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEE---------E-EeCCceecCCCCCC---CCCCCC-----CCCCCCEEEec
Q 034934 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSF---------V-KIGQSLCGEGPGKD---PFRRDQ-----KTPVKNFFLAG 65 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~~~~~~v~~~~v---------~-~e~~At~~~~pg~~---~~RP~~-----~T~~~nL~lAG 65 (78)
-+++.++++++.+.+++|.+... ++...+ + +.+...|..+-|.. -.||.. +|||+||||||
T Consensus 443 ~K~~~ae~~~~~ie~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcG 521 (561)
T KOG4254|consen 443 KKEAFAERVFSVIEKLAPGFSSS-VESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCG 521 (561)
T ss_pred HHHHHHHHHHHHHHHHcCCccce-EEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEec
Confidence 36778999999999999987433 433332 2 23345565444433 348888 99999999999
Q ss_pred ccccccc
Q 034934 66 SYTKQYG 72 (78)
Q Consensus 66 Dwt~~~~ 72 (78)
|-+.+.+
T Consensus 522 s~afPGg 528 (561)
T KOG4254|consen 522 SGAFPGG 528 (561)
T ss_pred CCCCCCC
Confidence 8776543
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=96.37 E-value=0.0017 Score=48.74 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC----CCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ----KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~----~T~~~nL~lAGDwt~~ 70 (78)
.++||||++.++++|.++++....+. ...|.|.+++-+.+.+|+..++... .+-.+||+++|-|-.-
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~~~~~--~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g 425 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGINGDPV--FVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG 425 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcCcchh--heeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC
Confidence 47899999999999999999653333 7889999999999999987554333 3334789999977554
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=95.86 E-value=0.035 Score=41.61 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeC----------CceecCC---CCCCCCCCCC-CCCCCCEEEeccccccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIG----------QSLCGEG---PGKDPFRRDQ-KTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~----------~At~~~~---pg~~~~RP~~-~T~~~nL~lAGDwt~~~ 71 (78)
+++.+. ..++++..|..+ ..++..++..-. ...+... ......||.. +|+++|||++|++|.+.
T Consensus 385 ~~~~~~-~~~~~~~~p~~~-~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 385 ESLADA-IDALEELAPGLR-DRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred HHHHHH-HHHHhhcCCCcc-cceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 444444 557889999764 334444443211 1112211 1122446755 59999999999999865
Q ss_pred c
Q 034934 72 G 72 (78)
Q Consensus 72 ~ 72 (78)
+
T Consensus 463 ~ 463 (487)
T COG1233 463 G 463 (487)
T ss_pred C
Confidence 5
>PLN02529 lysine-specific histone demethylase 1
Back Show alignment and domain information
Probab=95.21 E-value=0.086 Score=41.95 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCc-----eecC-CCCCCC--CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQS-----LCGE-GPGKDP--FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~A-----t~~~-~pg~~~--~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.++++++++.++++|+++|+.. ..+.+....+.+-... .|++ .||... +....++...+||+|||+|...
T Consensus 496 ~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~ 575 (738)
T PLN02529 496 NTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQ 575 (738)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCC
Confidence 4788999999999999999631 1123333333332211 1222 222211 1111122347899999999975
Q ss_pred cc
Q 034934 72 GR 73 (78)
Q Consensus 72 ~~ 73 (78)
.+
T Consensus 576 ~p 577 (738)
T PLN02529 576 YP 577 (738)
T ss_pred CC
Confidence 44
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Back Show alignment and domain information
Probab=94.57 E-value=0.094 Score=39.93 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE-----eCCceecC-CCCCCCCC-CCCCCCCCC-EEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK-----IGQSLCGE-GPGKDPFR-RDQKTPVKN-FFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~-----e~~At~~~-~pg~~~~R-P~~~T~~~n-L~lAGDwt~~~~~ 73 (78)
.+++++++..++..|+++|+...-....+..|.+ ....++.+ .+|....+ +....|+.| +|+||.+|.+..+
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~ 438 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP 438 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC
Confidence 5789999999999999999932233344444444 22333332 22322222 344678888 9999999997665
Q ss_pred C
Q 034934 74 S 74 (78)
Q Consensus 74 ~ 74 (78)
.
T Consensus 439 ~ 439 (501)
T KOG0029|consen 439 G 439 (501)
T ss_pred C
Confidence 4
>PLN02976 amine oxidase
Back Show alignment and domain information
Probab=94.50 E-value=0.083 Score=45.25 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC-CCCCCCCCCCC-EEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP-FRRDQKTPVKN-FFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~-~RP~~~T~~~n-L~lAGDwt~~~~~ 73 (78)
.++++++++.++++|+++|+....+.+....+.+-... .|. ..||... .+.....|+.| ||+||+.|....+
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 47899999999999999998532234555555442222 222 2345322 12223356666 9999998876544
>PLN02676 polyamine oxidase
Back Show alignment and domain information
Probab=94.21 E-value=0.11 Score=39.05 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---eCC--ceec-CCCCCCC-CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---IGQ--SLCG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~---e~~--At~~-~~pg~~~-~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.+++++.++.++++|+++|+.. -..+....+.. ++. ..|. +.||... ..+.-+.|+.+||+||+.|+..
T Consensus 375 ~~s~e~~~~~vl~~L~~~~g~~-~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~ 450 (487)
T PLN02676 375 QQPDSETKAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEK 450 (487)
T ss_pred hCCHHHHHHHHHHHHHHHhCCC-CCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccc
Confidence 4788999999999999999732 12333333222 221 2222 4556432 2334456778999999988754
>PLN03000 amine oxidase
Back Show alignment and domain information
Probab=94.09 E-value=0.25 Score=40.15 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCC--CCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~At~~------~~pg~~~-~RP~~~T~~--~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++|+.. .-..+....+.+-...-|. +.||... .+..-..|+ .+||+||+.|..
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~ 599 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTR 599 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhC
Confidence 4789999999999999999631 1123444544442222222 2334321 122223354 379999999986
Q ss_pred ccc
Q 034934 71 YGR 73 (78)
Q Consensus 71 ~~~ 73 (78)
..+
T Consensus 600 ~~~ 602 (881)
T PLN03000 600 RYP 602 (881)
T ss_pred CCC
Confidence 443
>PLN02328 lysine-specific histone demethylase 1 homolog
Back Show alignment and domain information
Probab=93.87 E-value=0.31 Score=39.30 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCC--CCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~--~~~~v~~~~v~~e~~At~~------~~pg~~~-~RP~~~T~~--~nL~lAGDwt~~ 70 (78)
.++++++++.++++|+++|+.. ....+....+.+-...-|. ..||... ..+....|+ .+||+||++|..
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 4789999999999999999631 1233444555543333222 2344321 112212343 489999999986
Q ss_pred cc
Q 034934 71 YG 72 (78)
Q Consensus 71 ~~ 72 (78)
..
T Consensus 656 ~~ 657 (808)
T PLN02328 656 QY 657 (808)
T ss_pred CC
Confidence 43
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria
Back Show alignment and domain information
Probab=91.99 E-value=0.31 Score=36.26 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~-~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+.. +-+|..+|-. .+.-+|. ++|||+||+-+-+.|
T Consensus 312 ~~Q~~~~r~IpGLe~a~~~r~Gy~~--ey~~v~~~~l---~~~l~~k~~~~lf~AGqi~G~~G 369 (392)
T PF01134_consen 312 DVQKRIFRSIPGLENAEILRPGYAH--EYDFVDPPQL---LNTLETKKIPGLFFAGQINGTEG 369 (392)
T ss_dssp HHHHHHHTTSTTTTT--EEE--EEE--EEEEE-GGGB---BTTSBBSSSBTEEE-GGGGTB-S
T ss_pred HHHHHHhhcCCChhcChhhheEEee--eeeEEehhhc---ccceEECCCCCceECCCCcchhH
Confidence 4566777889998888887766655 4577776653 3466775 999999999776543
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Back Show alignment and domain information
Probab=90.43 E-value=0.39 Score=36.23 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 12 VAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 12 ~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
+..++-+.+|....+++....+.. +=+|...|.. .-+.-++ .++|||+||+-+...|
T Consensus 287 ~Q~~~~r~Ipgle~a~~~r~G~~~--~~~~i~~p~~--l~~~l~~k~~~~l~~AGqi~g~~G 344 (436)
T PRK05335 287 EQKRVFRMIPGLENAEFVRYGVMH--RNTFINSPKL--LDPTLQLKKRPNLFFAGQITGVEG 344 (436)
T ss_pred HHHHHHhcccchhceEEEeceEEe--eccccCChhh--CchhccccCCCCEEeeeeecCchH
Confidence 456677889998888887777765 4577777765 3445555 6899999999886543
>PLN02568 polyamine oxidase
Back Show alignment and domain information
Probab=90.24 E-value=0.61 Score=35.71 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCC
Q 034934 2 PLPNDEIIRRVAKQVLALFPS 22 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~ 22 (78)
.++++++++.+++.|+++|+.
T Consensus 402 ~l~~~~~~~~~~~~L~~~~g~ 422 (539)
T PLN02568 402 KLSDEEIIRGVQTTLSSFLKR 422 (539)
T ss_pred cCCHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999973
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase
Back Show alignment and domain information
Probab=88.70 E-value=0.47 Score=35.68 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....++++...+.. +=+|..+|-. ..|.-++ .++|||+||.-+-+.|
T Consensus 285 ~~Q~~~~r~ipgle~a~~~r~g~~~--~~~~i~~p~~--L~~~l~~k~~~~lf~AGQi~G~~G 343 (433)
T TIGR00137 285 GEQKRVFRLIPGLENAEFVRMGVMH--RNTFINSPQL--LTASLHFKDRQTLFFAGQLTGVEG 343 (433)
T ss_pred HHHHHHHhcCcCccceEEeecceEE--eeeeeCCHHH--hhHHhccCCCCCEEECcccccchH
Confidence 3456677889998888887777665 4577777765 5666666 5799999997665543
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Back Show alignment and domain information
Probab=87.16 E-value=0.9 Score=33.04 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
+++++|..+..+.....++++. ..+++..+.+.+-+.|.+...-+. -|...-+--+||.||||...
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~WrYA~P~~~~~~---~~L~ad~~~~l~~cGDwc~G 310 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWRYAIPNDAVAG---PPLDADRELPLYACGDWCAG 310 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccccccccccccC---CccccCCCCceeeecccccC
Confidence 3577888887777777777763 124444555666666666544332 23222333459999999875
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 78
3ka7_A 425
Oxidoreductase; structural genomics, PSI-2, protei
98.93 3qj4_A 342
Renalase; FAD/NAD(P)-binding rossmann fold superfa
98.57 3nrn_A 421
Uncharacterized protein PF1083; alpha-beta protein
98.31 3lov_A 475
Protoporphyrinogen oxidase; structural genomics, J
98.19 1b37_A 472
Protein (polyamine oxidase); flavin-dependent amin
98.15 3i6d_A 470
Protoporphyrinogen oxidase; protein-inhibitor comp
98.09 4dgk_A 501
Phytoene dehydrogenase; the FAD/NAD(P)-binding ros
98.07 1s3e_A 520
Amine oxidase [flavin-containing] B; human monoami
98.06 3nks_A 477
Protoporphyrinogen oxidase; FAD containing protein
97.96 1sez_A 504
Protoporphyrinogen oxidase, mitochondrial; FAD-bin
97.86 2yg5_A 453
Putrescine oxidase; oxidoreductase, flavin; HET: F
97.81 2ivd_A 478
PPO, PPOX, protoporphyrinogen oxidase; porphyrin b
97.61 1yvv_A 336
Amine oxidase, flavin-containing; oxidoreductase,
97.49 2z3y_A 662
Lysine-specific histone demethylase 1; chromatin,
97.42 2jae_A 489
L-amino acid oxidase; oxidoreductase, dimerisation
97.41 2xag_A 852
Lysine-specific histone demethylase 1; amine oxida
97.38 4gde_A 513
UDP-galactopyranose mutase; flavin adenine dinucle
97.09 2vvm_A 495
Monoamine oxidase N; FAD, peroxisome, flavoprotein
97.06 2e1m_C 181
L-glutamate oxidase; L-amino acid oxidase, FAD, L-
97.05 4gut_A 776
Lysine-specific histone demethylase 1B; histone de
96.95 4dsg_A 484
UDP-galactopyranose mutase; rossmann fold, flavin
95.7 2iid_A 498
L-amino-acid oxidase; flavoenzyme, FAD binding dom
95.36 3kkj_A 336
Amine oxidase, flavin-containing; oxidoreductase,
94.36 2b9w_A 424
Putative aminooxidase; isomerase, conjugated linol
93.2 3k7m_X 431
6-hydroxy-L-nicotine oxidase; enantiomeric substra
91.22 3g5s_A 443
Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy
84.65 2zxi_A 637
TRNA uridine 5-carboxymethylaminomethyl modificat
84.28
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Back Hide alignment and structure
Probab=98.93 E-value=4.1e-09 Score=73.70 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 6 eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
++++++++++|++++|.. .+++ ..|.+.+.+.+.+.|| +..+|.+.||++||||||||+.+.
T Consensus 343 ~~~~~~~~~~l~~~~p~~-~~~~--~~v~~~~~~~P~~~~~-~~~~~~~~~p~~gL~laG~~~~~~ 404 (425)
T 3ka7_A 343 ESEIEMGLEDLKEIFPGK-RYEV--LLIQSYHDEWPVNRAA-SGTDPGNETPFSGLYVVGDGAKGK 404 (425)
T ss_dssp HHHHHHHHHHHHHHSTTC-CEEE--EEEEEEBTTBCSBSSC-TTCCCCSBCSSBTEEECSTTSCCT
T ss_pred HHHHHHHHHHHHHhCCCC-ceEE--EEEEEECCCccccccc-cCCCCCCCCCcCCeEEeCCccCCC
Confidence 566799999999999972 3333 4677788898888888 457899999999999999999873
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Back Show alignment and structure
Probab=98.57 E-value=2.4e-07 Score=63.47 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC--CCCCEEEeccccccc
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT--PVKNFFLAGSYTKQY 71 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T--~~~nL~lAGDwt~~~ 71 (78)
+++++||+++.++++|+++++.. +.+...++.|.++|.+.... ..+|+... ..+||+|||||+...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~v~rW~~a~p~~~~---~~~~~~~~~~~~~~l~laGd~~~g~ 322 (342)
T 3qj4_A 255 LEHSIEDVQELVFQQLENILPGL--PQPIATKCQKWRHSQVTNAA---ANCPGQMTLHHKPFLACGGDGFTQS 322 (342)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSC--CCCSEEEEEEETTCSBSSCC---SSSCSCEEEETTTEEEECSGGGSCS
T ss_pred hcCCHHHHHHHHHHHHHHhccCC--CCCceeeecccccccccccc---CCCcceeEecCCccEEEEccccCCC
Confidence 36789999999999999999843 45677889999988875433 23666664 789999999999743
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Back Show alignment and structure
Probab=98.31 E-value=1.6e-06 Score=60.86 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccccc
Q 034934 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 4 ~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
+.+|+++.+.++|++++| .+++...+..+....++...+|.. +. .++ +||||||||+++.
T Consensus 325 ~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~---~~-~~~-~gl~laGd~~~~~ 384 (421)
T 3nrn_A 325 NVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLH---IE-WPL-NEVLVVGDGYRPP 384 (421)
T ss_dssp CHHHHHHHHHHHHHHHCT---TCEEEEEEEC-------------C---CC-CCC-SSEEECSTTCCCT
T ss_pred cHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCC---CC-CCC-CcEEEECCcccCC
Confidence 345679999999999999 356655555554455555566653 33 788 9999999999865
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Back Show alignment and structure
Probab=98.19 E-value=2.4e-07 Score=65.87 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCC----CCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDP----FRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~----~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.+++||+++.++++|+++++.. ..+....+.+.+++.+.+.||... .++...++++|||+||||+..
T Consensus 374 ~~~~e~~~~~~~~~L~~~~g~~--~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g 444 (475)
T 3lov_A 374 HESDEVLQQAVLQDLEKICGRT--LEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG 444 (475)
T ss_dssp GSCHHHHHHHHHHHHHHHHSSC--CCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC
Confidence 4689999999999999999863 456678899999999999999632 134344678999999998863
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Back Show alignment and structure
Probab=98.15 E-value=9.4e-07 Score=63.14 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---C--Cceec-CCCCCCC-CCCCCCCCCCCEEEeccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---G--QSLCG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQY 71 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~--~At~~-~~pg~~~-~RP~~~T~~~nL~lAGDwt~~~ 71 (78)
.++++|+++.++++|++++|......+....+.+- + +..+. ..||... .++..++|++|||+|||+|.+.
T Consensus 359 ~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~ 435 (472)
T 1b37_A 359 QQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEH 435 (472)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTT
T ss_pred hCCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCC
Confidence 36899999999999999998643234443333221 1 33344 4567642 3566788999999999999863
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Back Show alignment and structure
Probab=98.09 E-value=5.1e-07 Score=63.37 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCC----CCCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDP----FRRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~----~RP~~~T~~~nL~lAGDwt~ 69 (78)
.++++|+++.++++|++++|.. ..+....+.+.+++.+.+.+|... .++...++.+|||+||||+.
T Consensus 377 ~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~ 446 (470)
T 3i6d_A 377 DLSDNDIINIVLEDLKKVMNIN--GEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE 446 (470)
T ss_dssp TSCHHHHHHHHHHHHGGGSCCC--SCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC
Confidence 4789999999999999999863 456677888989999999998642 23334466789999999875
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Back Show alignment and structure
Probab=98.07 E-value=2.6e-06 Score=60.73 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEEE----------eCCceecCCCCCC---CCCCCCC-CCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFVK----------IGQSLCGEGPGKD---PFRRDQK-TPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~-~P~~~~~~v~~~~v~~----------e~~At~~~~pg~~---~~RP~~~-T~~~nL~lAGDwt~ 69 (78)
++++.+++++.|++. +|+.+ ..++...+.. ...+.|...+... ..||... |+++|||||||||.
T Consensus 390 ~~~~~~~vl~~l~~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~ 468 (501)
T 4dgk_A 390 GPKLRDRIFAYLEQHYMPGLR-SQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTH 468 (501)
T ss_dssp HHHHHHHHHHHHHHHTCTTHH-HHEEEEEEECTTTTC------------------------------CCTTEEECCCH--
T ss_pred HHHHHHHHHHHHHHhhCCChH-HceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCC
Confidence 467888899999875 47642 3344343331 1124455444322 2588664 89999999999997
Q ss_pred cc
Q 034934 70 QY 71 (78)
Q Consensus 70 ~~ 71 (78)
+.
T Consensus 469 pG 470 (501)
T 4dgk_A 469 PG 470 (501)
T ss_dssp --
T ss_pred Cc
Confidence 53
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Back Show alignment and structure
Probab=98.06 E-value=2.3e-06 Score=61.77 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee-------cCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC-------GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~-------~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|++++|......+....+.+..+..| .+.||.. ..+|..++|++|||+|||+|++..+
T Consensus 354 ~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~ 433 (520)
T 1s3e_A 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS 433 (520)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc
Confidence 4689999999999999999853223445555555443322 2455542 2356778899999999999975433
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Back Show alignment and structure
Probab=97.96 E-value=1.1e-06 Score=62.33 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC----CCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ----KTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~----~T~~~nL~lAGDwt~~ 70 (78)
.+++||+++.++++|+++++.. ..+....+.+.++|.+.+.+|...++... ....+||++||||...
T Consensus 383 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G 453 (477)
T 3nks_A 383 VLSQELFQQRAQEAAATQLGLK--EMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEG 453 (477)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCC
Confidence 3689999999999999999753 45667889999999999999975332211 1224689999999753
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Back Show alignment and structure
Probab=97.86 E-value=1.9e-06 Score=61.60 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCC---CCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFR---RDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~R---P~~~T~~~nL~lAGDwt~ 69 (78)
.+++||+++.++++|+++++.. ..+....+.+.+++.+.+.+|..... +...++++|||+||||+.
T Consensus 403 ~~~~ee~~~~v~~~L~~~~g~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~ 471 (504)
T 1sez_A 403 KASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG 471 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 4689999999999999999863 34556777777788888888864322 223467899999999986
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Back Show alignment and structure
Probab=97.81 E-value=7.3e-06 Score=57.73 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----cee--cCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLC--GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~-----At~--~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
++++|+++.++++|++++|.. ...+....+.+-.+ ..+ .+.||.. ..+|..++|++|||+|||+|++..+
T Consensus 353 ~~~~~~~~~~l~~L~~~~~~~-~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~ 430 (453)
T 2yg5_A 353 LSAEERKATILASLARYLGPK-AEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGY 430 (453)
T ss_dssp SCHHHHHHHHHHHHHHHHCGG-GGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTT
T ss_pred CCHHHHHHHHHHHHHHHhCcc-CCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccc
Confidence 578999999999999999842 12333443333221 122 2356632 2356678899999999999976443
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Back Show alignment and structure
Probab=97.61 E-value=1.9e-05 Score=55.91 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
+++++++++.++++|.+++|.. ..+....+.+.+++.+.+.||.... ++...+ ++|||+||||+.
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~ 451 (478)
T 2ivd_A 383 EQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYK 451 (478)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCC
Confidence 3688999999999999999864 3455667778888877778875321 112223 789999999974
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Back Show alignment and structure
Probab=97.42 E-value=0.00027 Score=53.08 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC--------------CCCCCCCCCCCE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP--------------FRRDQKTPVKNF 61 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~--------------~RP~~~T~~~nL 61 (78)
.++++|+++.++++|+++|+......+....+.+-.+. .|. +.||... .+|...++.++|
T Consensus 546 ~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl 625 (662)
T 2z3y_A 546 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625 (662)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCE
T ss_pred hCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcE
Confidence 57899999999999999998643345655656554443 232 3455421 134446678999
Q ss_pred EEecccccccc
Q 034934 62 FLAGSYTKQYG 72 (78)
Q Consensus 62 ~lAGDwt~~~~ 72 (78)
|+||++|+...
T Consensus 626 ~FAGe~ts~~~ 636 (662)
T 2z3y_A 626 FFAGEHTIRNY 636 (662)
T ss_dssp EECSGGGCTTS
T ss_pred EEEeccccCCC
Confidence 99999999643
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Back Show alignment and structure
Probab=97.41 E-value=7.2e-05 Score=53.29 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC------C------CCCC-CCCCCCCCCCCCEEEecccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE------G------PGKD-PFRRDQKTPVKNFFLAGSYT 68 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~------~------pg~~-~~RP~~~T~~~nL~lAGDwt 68 (78)
.++++++++.++++|++++|......+....+.+-.+..+.. . ||.. ..++..+++.+|||+||+++
T Consensus 381 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~ 460 (489)
T 2jae_A 381 SLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHL 460 (489)
T ss_dssp TSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGG
T ss_pred cCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHh
Confidence 468999999999999999985112344444444433433321 1 3321 12334467899999999999
Q ss_pred cc
Q 034934 69 KQ 70 (78)
Q Consensus 69 ~~ 70 (78)
..
T Consensus 461 ~~ 462 (489)
T 2jae_A 461 SN 462 (489)
T ss_dssp BS
T ss_pred cc
Confidence 63
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Back Show alignment and structure
Probab=97.38 E-value=0.00048 Score=53.70 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC--------------CCCCCCCCCCCE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP--------------FRRDQKTPVKNF 61 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~A-----t~~-~~pg~~~--------------~RP~~~T~~~nL 61 (78)
.++++++++.++++|+++|+......+....+.+-.+. .|. +.||... .||...++.++|
T Consensus 717 ~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL 796 (852)
T 2xag_A 717 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 796 (852)
T ss_dssp GSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCE
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcE
Confidence 47899999999999999998643345666666654443 233 3555421 134456778999
Q ss_pred EEeccccccccc
Q 034934 62 FLAGSYTKQYGR 73 (78)
Q Consensus 62 ~lAGDwt~~~~~ 73 (78)
|+||++|+....
T Consensus 797 ~FAGE~Ts~~~~ 808 (852)
T 2xag_A 797 FFAGEHTIRNYP 808 (852)
T ss_dssp EECSGGGCTTST
T ss_pred EEEehhHhCCCC
Confidence 999999996443
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Back Show alignment and structure
Probab=97.09 E-value=0.0001 Score=52.35 Aligned_cols=64 Identities=8% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSY 67 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDw 67 (78)
.+++|||++.+.++|.++.+....+.++...|.|.++|-+.+..|.... ++..+. +|||++|-+
T Consensus 384 ~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~--~~l~~~GR~ 451 (513)
T 4gde_A 384 PVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD--KDIWSRGRF 451 (513)
T ss_dssp CCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH--TTEEECSTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh--cCcEEecCC
Confidence 4789999999999999999876667899999999999999999886532 343333 699999943
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Back Show alignment and structure
Probab=97.06 E-value=7.6e-05 Score=53.24 Aligned_cols=68 Identities=19% Similarity=0.068 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---CC--ceec-CCCCCC-CCCCCCCCCCCCEEEecccccccc
Q 034934 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---GQ--SLCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQYG 72 (78)
Q Consensus 3 ~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e---~~--At~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~ 72 (78)
++++++++.++++|++++|.. ..+....+.+- +. ..|. +.||.. ..++...+|.+|||+|||++....
T Consensus 389 ~~~~e~~~~~~~~L~~~~~~~--~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~ 463 (495)
T 2vvm_A 389 IQPDEDVRETLKAVGQLAPGT--FGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGW 463 (495)
T ss_dssp CCTTTCHHHHHHHHHTTSTTS--CCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSS
T ss_pred CCCHHHHHHHHHHHHHhcCCC--CCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCC
Confidence 345677888999999999852 34444433332 21 2222 455643 224444568999999999998543
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Back Show alignment and structure
Probab=97.05 E-value=4.5e-05 Score=49.31 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCceeeE--EEEE---eCC--ceec-CCCCCC-CCCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALF-PSSQGLEVIWS--SFVK---IGQ--SLCG-EGPGKD-PFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~-P~~~~~~v~~~--~v~~---e~~--At~~-~~pg~~-~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++| |+. ..+... .+.+ ++. ..|. +.||.. ..++....|..+||+||++|+.
T Consensus 53 ~l~~~e~~~~~l~~L~~~~g~~~--~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~ 129 (181)
T 2e1m_C 53 SFDDAERYGYALENLQSVHGRRI--EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSL 129 (181)
T ss_dssp TSCTTTTHHHHHHHHHHHHCGGG--GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCc--HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcC
Confidence 4788999999999999999 432 233233 3332 222 2233 466754 2345455678899999999985
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Back Show alignment and structure
Probab=96.95 E-value=0.0013 Score=50.77 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC------CCCCCC-CCCCCCCC-CCCEEEeccccccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE------GPGKDP-FRRDQKTP-VKNFFLAGSYTKQYGR 73 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~------~pg~~~-~RP~~~T~-~~nL~lAGDwt~~~~~ 73 (78)
.++++|+++.++++|+++|+....+.+....+.+-.+.-|.. .||... ..+....| ..+||+||++|+...+
T Consensus 677 ~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~~~ 756 (776)
T 4gut_A 677 TLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFP 756 (776)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSSSC
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCCCC
Confidence 578999999999999999986433445555555433322221 223210 11111124 3789999999997654
Q ss_pred C
Q 034934 74 S 74 (78)
Q Consensus 74 ~ 74 (78)
+
T Consensus 757 g 757 (776)
T 4gut_A 757 Q 757 (776)
T ss_dssp S
T ss_pred c
Confidence 4
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Back Show alignment and structure
Probab=95.70 E-value=0.00084 Score=48.56 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEeccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~----RP~~~T~~~nL~lAGDwt~ 69 (78)
.++||||++.+.++|.++..-.....+....|.+.+.+-+.+.+|.... +..... . ||+++|.+-.
T Consensus 360 ~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~ 429 (484)
T 4dsg_A 360 PVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGA 429 (484)
T ss_dssp CCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTT
T ss_pred cCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHh-C-CcEeecCCcc
Confidence 4689999999999999986432234566677889999999999996422 332222 3 9999998543
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Back Show alignment and structure
Probab=95.36 E-value=0.0013 Score=46.79 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCc----eeeEEEEEeCCce------ecCCCCCCC-CCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLE----VIWSSFVKIGQSL------CGEGPGKDP-FRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~----v~~~~v~~e~~At------~~~~pg~~~-~RP~~~T~~~nL~lAGDwt~~ 70 (78)
.++++|+++.++++|+++++... .. .....+.+-.... ....||... .++...++.+|||+||++|..
T Consensus 383 ~~~~~~~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~ 461 (498)
T 2iid_A 383 ALDFKDCADIVFNDLSLIHQLPK-KDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQ 461 (498)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCH-HHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSS
T ss_pred cCCHHHHHHHHHHHHHHHcCCCh-hhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEccccc
Confidence 47899999999999999997321 11 1122233322211 113344321 234445678999999999964
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Back Show alignment and structure
Probab=94.36 E-value=0.2 Score=30.34 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEeccccc
Q 034934 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTK 69 (78)
Q Consensus 5 ~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~~~nL~lAGDwt~ 69 (78)
..+..+.....+...+... ...+....+.+.+.+.+.... ..+...+..+|||||||+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~a~~~~~~----~~~~~~~~~~~v~l~GDa~~ 305 (336)
T 3kkj_A 246 REQVIEHLHGAFAELIDCT-MPAPVFSLAHRWLYARPAGAH----EWGALSDADLGIYVCGDWCL 305 (336)
T ss_dssp HHHHHHHHHHHHHTTCSSC-CCCCSEEEEEEEEEEEESSCC----CCSSEEETTTTEEECCGGGT
T ss_pred chhhhhhhhhhhhhhccCC-cCcchheeccceeeccccccc----CccceeeCCCCEEEEecccC
Confidence 3444555566666655432 233444444444334333221 12333467789999999975
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Back Show alignment and structure
Probab=93.20 E-value=0.012 Score=40.79 Aligned_cols=63 Identities=13% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecC-----CCCCCCCCCCCCCCCCCEEEecccccc
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGE-----GPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~-----~pg~~~~RP~~~T~~~nL~lAGDwt~~ 70 (78)
+++++++.++++++|.++.+.. ..+... .... ..+.+ ..|. ..++....+.+|||+||+|+..
T Consensus 338 ~~~~~~~~~~v~~~l~~l~~~~--~~~~~~-~~w~--~~p~~~~~~~~~G~-~~~~~~~~~~~~l~~aG~~~~~ 405 (424)
T 2b9w_A 338 DKTQEECRQMVLDDMETFGHPV--EKIIEE-QTWY--YFPHVSSEDYKAGW-YEKVEGMQGRRNTFYAGEIMSF 405 (424)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCE--EEEEEE-EEEE--EEEECCHHHHHTTH-HHHHHHTTTGGGEEECSGGGSC
T ss_pred ccChHHHHHHHHHHHHHcCCcc--cccccc-ccee--eeeccCHHHHhccH-HHHHHHHhCCCCceEecccccc
Confidence 4678999999999999965421 111111 0111 11211 2222 1233444567899999999973
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Back Show alignment and structure
Probab=91.22 E-value=0.42 Score=32.97 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEE---eC---CceecCCCCCC-CCCCCCCCCCCCEEEeccccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVK---IG---QSLCGEGPGKD-PFRRDQKTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~---e~---~At~~~~pg~~-~~RP~~~T~~~nL~lAGDwt~~~~~ 73 (78)
++.+.|++++|+. .+....+.+ ++ .+-..+.||.. ..+|....|..+||+||..|.+..+
T Consensus 339 ~~~~~l~~~~~~~---~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~ 405 (431)
T 3k7m_X 339 AVKDAVLYYLPEV---EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFP 405 (431)
T ss_dssp HHHHHHHHHCTTC---EEEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSST
T ss_pred HHHHHHHHhcCCC---CccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCC
Confidence 4667888999853 233222222 22 22223567763 4577777889999999987775443
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Back Show alignment and structure
Probab=84.65 E-value=0.37 Score=35.46 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T-~~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+.. +=+|..+|-. ..+.-+| .++|||+||+-+.+.|
T Consensus 284 ~~Q~~~~r~IpGLE~a~~~r~G~~~--ey~~i~sP~~--L~~tle~k~~~~Lf~AGqi~G~~G 342 (443)
T 3g5s_A 284 PEQKRLIQMIPGLENAEIVRYGVMH--RNTYLNAPRL--LGETLEFREAEGLYAAGVLAGVEG 342 (443)
T ss_dssp HHHHHHHTTSTTCTTCCEEECCEEE--EEEEECHHHH--BCTTSEETTEEEEEECGGGGTBCS
T ss_pred HHHHHHHhcCcChhhCeeeeCcEee--cCceecChhH--hChhceecCCCCEEECccccccHH
Confidence 3556777889998888876555544 2356655543 4566666 5999999998877643
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Back Show alignment and structure
Probab=84.28 E-value=1.9 Score=32.86 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecccccccc
Q 034934 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQYG 72 (78)
Q Consensus 11 ~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~~~~pg~~~~RP~~~T~-~~nL~lAGDwt~~~~ 72 (78)
.+..++-+.+|....+++....+..+ =.|.. |-. ..|.-+|. ++|||+||+-+.+.|
T Consensus 346 ~~Q~~~~~~ipGle~a~~~r~Gy~ie--yd~i~-p~~--l~~tLe~k~~~gLf~AGqinGt~G 403 (637)
T 2zxi_A 346 EVQWEMYRSIPGLENVVLIRPAYAIE--YDVVP-PTE--LYPTLETKKIRGLFHAGNFNGTTG 403 (637)
T ss_dssp HHHHHHHTTSTTCTTCCEEECCEEEE--EEECC-GGG--BCTTSBBSSSBTEEECGGGGTBCS
T ss_pred HHHHHHHhhCcCcccceEeccccccc--cceEc-hhh--cCccccccCCCCEEEeeecCCcch
Confidence 34566777889887788765444321 12333 332 45666764 899999998877654
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 78
d2dw4a2 449
Lysine-specific histone demethylase 1, LSD1 {Human
97.33 d2ivda2 108
Protoporphyrinogen oxidase {Myxococcus xanthus [Ta
95.36 d1seza2 112
Protoporphyrinogen oxidase {Tobacco (Nicotiana tab
94.99 d1b5qa1 347
Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
92.38 d2v5za2 112
Monoamine oxidase B {Human (Homo sapiens) [TaxId:
91.91 d1seza1 373
Protoporphyrinogen oxidase {Tobacco (Nicotiana tab
91.81 d1b5qa2 112
Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
91.63 d2dw4a3 109
Lysine-specific histone demethylase 1, LSD1 {Human
91.42 d2iida2 113
L-aminoacid oxidase {Malayan pit viper (Calloselas
85.65 d1ojta1 229
Dihydrolipoamide dehydrogenase {Neisseria meningit
83.05 d1h6va1 235
Mammalian thioredoxin reductase {Rat (Rattus norve
82.14 d1ebda1 223
Dihydrolipoamide dehydrogenase {Bacillus stearothe
81.95 d3lada1 229
Dihydrolipoamide dehydrogenase {Azotobacter vinela
81.45
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=4e-05 Score=47.52 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=18.6
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEecccccccccC
Q 034934 42 GEGPGKDPFRRDQKTPVKNFFLAGSYTKQYGRS 74 (78)
Q Consensus 42 ~~~pg~~~~RP~~~T~~~nL~lAGDwt~~~~~~ 74 (78)
..+++....+|...++++|||+|||+|++..++
T Consensus 395 ~~p~~~~~~~~~~~~~~~~l~fAGe~t~~~~~g 427 (449)
T d2dw4a2 395 AQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPA 427 (449)
T ss_dssp HCCBCC---------CCCCEEECSGGGCTTSCS
T ss_pred cCCccccccchhhcCCCCCEEEEcCCcCCCCce
Confidence 345566678999999999999999999876543
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]
Probab=95.36 E-value=0.012 Score=33.57 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC 41 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~ 41 (78)
.++||||++.+.++|++++.-. +.+...+|.|-++|.+
T Consensus 70 ~~~d~~l~~~a~~dL~~~lgi~--~~P~~~~v~rw~~aiP 107 (108)
T d2ivda2 70 EQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLGIP 107 (108)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCB
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCCcEEEeeECCCCcC
Confidence 5789999999999999999753 5567788999888754
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.99 E-value=0.014 Score=33.47 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee
Q 034934 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC 41 (78)
Q Consensus 1 ~~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~~e~~At~ 41 (78)
+.++||||++.+.++|++++.-. +++...+|.|-++|.+
T Consensus 73 ~~~~d~~l~~~a~~dl~~~lgi~--~~P~~~~v~rw~~aiP 111 (112)
T d1seza2 73 AKASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFP 111 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC--CCccEEEEEECCcccC
Confidence 36789999999999999999753 4566688888888765
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]
Probab=92.38 E-value=0.033 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCCCCCEEEeccccccccc
Q 034934 55 KTPVKNFFLAGSYTKQYGR 73 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~~~~~ 73 (78)
.++.+|+|+|||++....+
T Consensus 303 ~~~~~~v~~~GD~~~~~~~ 321 (347)
T d1b5qa1 303 RAPVGRVYFTGEHTSEHYN 321 (347)
T ss_dssp HCCBTTEEECSGGGCSSCT
T ss_pred ccccCCEEEEEccccCcCC
Confidence 4678999999999986544
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.077 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFV 34 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~~v~ 34 (78)
.++++|+++.+++.|+++|+......+....+.
T Consensus 65 ~ls~~e~~~~~l~~L~~~~g~~~~~~~~~~~~~ 97 (112)
T d2v5za2 65 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEK 97 (112)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhCccccCCccEEEEc
Confidence 579999999999999999986332344444444
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.81 E-value=0.017 Score=34.81 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.9
Q ss_pred CCCCCCEEEeccccc
Q 034934 55 KTPVKNFFLAGSYTK 69 (78)
Q Consensus 55 ~T~~~nL~lAGDwt~ 69 (78)
.|++||||+||||+.
T Consensus 333 ~t~~pglf~aGd~~~ 347 (373)
T d1seza1 333 EKNLPGLFYAGNHRG 347 (373)
T ss_dssp HHHSTTEEECCSSSS
T ss_pred CCCCCCEEEEecCCC
Confidence 467899999999975
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]
Probab=91.63 E-value=0.1 Score=28.38 Aligned_cols=28 Identities=7% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCcee
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVI 29 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~ 29 (78)
.++++|+++.+++.|+++||......+.
T Consensus 66 ~l~~~~~~~~~l~~L~~~~~~~~~~~~~ 93 (112)
T d1b5qa2 66 QQSDEQTKAEIMQVLRKMFPGKDVPDAT 93 (112)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCCCCCS
T ss_pred hCCHHHHHHHHHHHHHHHhCcccccCCC
Confidence 4789999999999999999864334443
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.12 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeE
Q 034934 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWS 31 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~~~~~v~~~ 31 (78)
.++++|+++.++++|+++++......+...
T Consensus 63 ~l~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 92 (109)
T d2dw4a3 63 NISDDVIVGRCLAILKGIFGSSAVPQPKET 92 (109)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTTCCCCSEE
T ss_pred hcCHHHHHHHHHHHHHHHhCccccCcccEE
Confidence 578999999999999999986433444433
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.65 E-value=0.28 Score=26.67 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC
Q 034934 2 PLPNDEIIRRVAKQVLALFPSS 23 (78)
Q Consensus 2 ~~~~eel~~~~~~~L~~~~P~~ 23 (78)
.+++|++++.++++|.+++|..
T Consensus 64 ~l~~e~~~~~~l~~L~~~~~~~ 85 (113)
T d2iida2 64 ALDFKDCADIVFNDLSLIHQLP 85 (113)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999853
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]
Probab=83.05 E-value=0.28 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|.+||+|-|||-+..
T Consensus 186 ~~~TsvpgVyAaGDv~~~ 203 (229)
T d1ojta1 186 QMRTNVPHIYAIGDIVGQ 203 (229)
T ss_dssp TSBCSSTTEEECGGGTCS
T ss_pred CccCCCCCEEEEEecCCC
Confidence 457999999999998753
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.14 E-value=0.36 Score=29.08 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.1
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|.+||+|-|||-+..
T Consensus 190 ~~~TsvpgIyA~GDv~~g 207 (235)
T d1h6va1 190 EEQTNVPYIYAIGDILEG 207 (235)
T ss_dssp TSBCSSTTEEECGGGBTT
T ss_pred ccccCCCCEEEEEeccCC
Confidence 357999999999998863
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.95 E-value=0.33 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|.+||+|-|||-+..
T Consensus 178 ~~~T~~~gvyA~GDv~~~ 195 (223)
T d1ebda1 178 QCRTSVPNIFAIGDIVPG 195 (223)
T ss_dssp TCBCSSTTEEECGGGSSS
T ss_pred CCCCCCCCEEEEeccCCC
Confidence 467999999999998753
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]
Probab=81.45 E-value=0.33 Score=28.65 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.0
Q ss_pred CCCCCCCCEEEecccccc
Q 034934 53 DQKTPVKNFFLAGSYTKQ 70 (78)
Q Consensus 53 ~~~T~~~nL~lAGDwt~~ 70 (78)
..+|.+||+|.|||-+..
T Consensus 186 ~~~T~vpgiyA~GDv~~g 203 (229)
T d3lada1 186 YCATSVPGVYAIGDVVRG 203 (229)
T ss_dssp TSBCSSTTEEECGGGSSS
T ss_pred cccCCCCCEEEEeCCcch
Confidence 456899999999998753
